Query psy9826
Match_columns 125
No_of_seqs 119 out of 434
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 20:40:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 20.6 36 0.0012 26.6 1.4 34 31-64 158-200 (231)
2 3a5p_A Haemagglutinin I; lecti 20.5 24 0.00082 24.6 0.3 14 23-36 39-52 (104)
3 2izx_A CAMP-dependent protein 15.3 69 0.0023 18.0 1.4 26 75-100 14-39 (41)
4 3r8n_B 30S ribosomal protein S 15.2 43 0.0015 26.0 0.6 24 41-64 169-192 (218)
5 2vqe_B 30S ribosomal protein S 15.0 43 0.0015 26.7 0.6 33 31-63 159-200 (256)
6 3n91_A Uncharacterized protein 14.0 24 0.00083 29.2 -1.2 24 79-102 159-182 (323)
7 2peb_A Putative dioxygenase; s 13.6 69 0.0023 23.1 1.3 28 6-33 26-53 (122)
8 3e7j_A Heparinase II protein; 13.5 78 0.0027 28.5 1.9 26 33-59 178-203 (749)
9 1ssz_A Pulmonary surfactant-as 13.0 94 0.0032 17.8 1.5 16 5-20 3-18 (34)
10 1vi6_A 30S ribosomal protein S 12.4 52 0.0018 25.5 0.4 24 40-63 134-157 (208)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.63 E-value=36 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCceeeccc---------ccchhhhhhhcccCCCCcccccccc
Q psy9826 31 PKTVFFWAP---------MFKWGLVIAGIGDLTRPAEKLSISQ 64 (125)
Q Consensus 31 pkT~hFWgP---------v~kWgi~iA~i~D~~kppe~IS~~m 64 (125)
|.-+..=.| ..+=+||+.|+.|.+-||+.|+.+-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 555666666 4689999999999999999997654
No 2
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=20.55 E-value=24 Score=24.60 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=10.5
Q ss_pred hhhhCCCCCCceee
Q psy9826 23 PLWEHPAGPKTVFF 36 (125)
Q Consensus 23 ~~~~~paGpkT~hF 36 (125)
+.--|+.||||+|-
T Consensus 39 pitfseigpktvhq 52 (104)
T 3a5p_A 39 PITFSEIGPKTVHQ 52 (104)
T ss_dssp CEEEECCSCCCSSS
T ss_pred ceeehhcCCceeee
Confidence 44457899999984
No 3
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=15.35 E-value=69 Score=17.99 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.6
Q ss_pred HhhhhheeecccchhhhhhhhhhhhH
Q psy9826 75 WSRYSLVIIPKNWSLFSVNVFVAATS 100 (125)
Q Consensus 75 w~R~a~~I~PrNy~L~a~n~~~~~~q 100 (125)
|+|-.+.-+|.|.+-|+.+.|....+
T Consensus 14 ~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 14 YTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 56778888999999999999887654
No 4
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=15.19 E-value=43 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred cchhhhhhhcccCCCCcccccccc
Q psy9826 41 FKWGLVIAGIGDLTRPAEKLSISQ 64 (125)
Q Consensus 41 ~kWgi~iA~i~D~~kppe~IS~~m 64 (125)
.+=+||+.||.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 467899999999999999987654
No 5
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=15.00 E-value=43 Score=26.68 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCceeecccc---------cchhhhhhhcccCCCCccccccc
Q psy9826 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 pkT~hFWgPv---------~kWgi~iA~i~D~~kppe~IS~~ 63 (125)
|.-+..=.|. .+=|||+-||.|.+-||+.|+.+
T Consensus 159 Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 159 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp CSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceE
Confidence 5555555553 47799999999999999998754
No 6
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=13.95 E-value=24 Score=29.20 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred hheeecccchhhhhhhhhhhhHHH
Q psy9826 79 SLVIIPKNWSLFSVNVFVAATSIY 102 (125)
Q Consensus 79 a~~I~PrNy~L~a~n~~~~~~q~~ 102 (125)
.|.|+|++|.|++++..|.-.|.|
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Y 182 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEY 182 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEE
Confidence 589999999999999999877765
No 7
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=13.58 E-value=69 Score=23.08 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHHHHhhhhhcCcccchhhhhCCCCCCc
Q psy9826 6 YRAAISAVDRFVPSKARPLWEHPAGPKT 33 (125)
Q Consensus 6 y~~~~~~~~~~~~~~~~~~~~~paGpkT 33 (125)
-++|+.++.+-++-.+-+++..|+||-.
T Consensus 26 A~~Lre~i~~~F~l~vgr~h~~pVGPHp 53 (122)
T 2peb_A 26 AARVREGLGARFEVQLGRWFDKPIGPHP 53 (122)
T ss_dssp HHHHHHHHHHHSCCEEEEEESSCCTTCS
T ss_pred HHHHHHHHHHhcCeeecCCccccCCCCC
Confidence 3566666666667778899999999953
No 8
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=13.49 E-value=78 Score=28.50 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=21.7
Q ss_pred ceeecccccchhhhhhhcccCCCCccc
Q psy9826 33 TVFFWAPMFKWGLVIAGIGDLTRPAEK 59 (125)
Q Consensus 33 T~hFWgPv~kWgi~iA~i~D~~kppe~ 59 (125)
+.|.|.++++ |+.+|+|+=+...||.
T Consensus 178 ~~~NWn~vc~-Gll~aALAL~~d~pe~ 203 (749)
T 3e7j_A 178 GAASEWMIMR-DLLSVGIAIYDEFPEM 203 (749)
T ss_dssp SGGGTHHHHT-HHHHHHHHTTTTCTHH
T ss_pred CCChHHHHHH-HHHHHHHHHcCCcHHH
Confidence 6799999999 9999998766666765
No 9
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=12.99 E-value=94 Score=17.79 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhcCccc
Q psy9826 5 IYRAAISAVDRFVPSK 20 (125)
Q Consensus 5 ~y~~~~~~~~~~~~~~ 20 (125)
+.|.++++++.++|..
T Consensus 3 lcr~likriqa~ipk~ 18 (34)
T 1ssz_A 3 LCRALIKRIQAMIPKG 18 (34)
T ss_dssp HHHHHHHHHHHHCSSS
T ss_pred hHHHHHHHHHHHcccc
Confidence 5788999999888865
No 10
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=12.43 E-value=52 Score=25.47 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=20.7
Q ss_pred ccchhhhhhhcccCCCCccccccc
Q psy9826 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 40 v~kWgi~iA~i~D~~kppe~IS~~ 63 (125)
..|=+||+-|+.|.+-||+.|+..
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 357899999999999999998654
Done!