Query psy9826
Match_columns 125
No_of_seqs 119 out of 434
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 20:40:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9826.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9826hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 17.2 16 0.0012 26.1 0.6 33 31-63 150-191 (218)
2 d2gsta1 a.45.1.1 (A:85-217) Cl 16.3 35 0.0026 21.3 2.0 25 19-44 107-131 (133)
3 d2p8ia1 d.58.55.1 (A:1-115) Pu 15.5 30 0.0022 23.0 1.5 31 7-37 27-59 (115)
4 d2fhea1 a.45.1.1 (A:81-216) Cl 15.2 35 0.0026 21.7 1.8 26 19-45 106-131 (136)
5 d2uubb1 c.23.15.1 (B:7-240) Ri 12.7 24 0.0018 25.6 0.4 33 31-63 153-194 (234)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 11.8 52 0.0038 17.3 1.5 16 65-80 7-22 (32)
7 d1gsua1 a.45.1.1 (A:85-217) Cl 10.4 65 0.0048 19.9 2.0 26 19-45 107-132 (133)
8 d3gtub1 a.45.1.1 (B:85-224) Cl 8.2 26 0.0019 21.9 -0.8 25 19-44 111-135 (140)
9 d1v54j_ f.23.4.1 (J:) Mitochon 8.0 32 0.0023 20.5 -0.4 25 56-80 26-50 (58)
10 d2c4ja1 a.45.1.1 (A:86-218) Cl 7.7 98 0.0071 19.1 2.0 25 19-44 107-131 (133)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=17.20 E-value=16 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCceeeccccc---------chhhhhhhcccCCCCccccccc
Q psy9826 31 PKTVFFWAPMF---------KWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 pkT~hFWgPv~---------kWgi~iA~i~D~~kppe~IS~~ 63 (125)
|.-++.-.|.- +=+||+-||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 77777777764 6789999999999999999765
No 2
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.25 E-value=35 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=16.2
Q ss_pred ccchhhhhCCCCCCceeecccccchh
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWG 44 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWg 44 (125)
+.+++..+++.=++. =|++|.++||
T Consensus 107 P~ik~yl~s~~~~~~-p~~~~~a~~~ 131 (133)
T d2gsta1 107 KKISAYMKSSRYLST-PIFSKLAQWS 131 (133)
T ss_dssp HHHHHHHTSTTCCCC-CCSCTTSSSS
T ss_pred HHHHHHHhCCCcCCC-CCCCcccCcC
Confidence 456777776633221 2559999997
No 3
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=15.52 E-value=30 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=21.6
Q ss_pred HHHHhhhhhcCcc--cchhhhhCCCCCCceeec
Q psy9826 7 RAAISAVDRFVPS--KARPLWEHPAGPKTVFFW 37 (125)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~paGpkT~hFW 37 (125)
.+|+.++.+-.+. .+-++++.|+||-.+..|
T Consensus 27 ~~Lr~~i~~~f~~~~~~gr~~~kpVGPHp~~~~ 59 (115)
T d2p8ia1 27 WTLREQIEAHWSGKLQLGRFHERPVGPHPMWSY 59 (115)
T ss_dssp HHHHHHHHHHTTTCSEECCCBSSCCTTCSSEEE
T ss_pred HHHHHHHHHhcccceEEeecccCccCCCCCeEE
Confidence 4566666666663 357999999999765544
No 4
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=15.17 E-value=35 Score=21.72 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=18.5
Q ss_pred ccchhhhhCCCCCCceeecccccchhh
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWGL 45 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWgi 45 (125)
+.++++++|+. .....+.+|.++||-
T Consensus 106 P~Ik~yl~S~~-~~~~P~~~~~a~~~~ 131 (136)
T d2fhea1 106 PSIKAYMESNR-FIKWPLNGWHAQFGG 131 (136)
T ss_dssp HHHHHHHTSSS-CCCSCSSCTTCSSSC
T ss_pred HHHHHHHcCcc-cCCCCCCCCcCccCC
Confidence 45778887754 334667899999973
No 5
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=12.67 E-value=24 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCceeeccccc---------chhhhhhhcccCCCCccccccc
Q psy9826 31 PKTVFFWAPMF---------KWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 pkT~hFWgPv~---------kWgi~iA~i~D~~kppe~IS~~ 63 (125)
|.-++--.|.- +=+||+-||.|.+-+|+.|+.+
T Consensus 153 Pd~viv~d~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 153 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp CSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEE
T ss_pred ceeEEEecCCccHHHHHHHHhhCCCEEEEeecCCCccCCcEE
Confidence 55555555543 6789999999999999998653
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.78 E-value=52 Score=17.32 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.6
Q ss_pred chhHHHhhHHHhhhhh
Q psy9826 65 SSALAATGLIWSRYSL 80 (125)
Q Consensus 65 t~aL~~~g~iw~R~a~ 80 (125)
.+|+.-+|+||.-|.+
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 5789999999998865
No 7
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.39 E-value=65 Score=19.89 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=15.6
Q ss_pred ccchhhhhCCCCCCceeecccccchhh
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWGL 45 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWgi 45 (125)
+.+++..+++.=. .-=+++|++|||.
T Consensus 107 P~Ik~yl~s~~~~-~~P~~~~~~~~~~ 132 (133)
T d1gsua1 107 EKISAYMRSGRFM-KAPIFWYTALWNN 132 (133)
T ss_dssp HHHHHHHTSSSCC-CCCCSCTTCSSSC
T ss_pred HHHHHHHcCCCcC-CCCCCCcccccCC
Confidence 4456677665421 2225579999983
No 8
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=26 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=12.8
Q ss_pred ccchhhhhCCCCCCceeecccccchh
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWG 44 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWg 44 (125)
+.+++.++++.=++..++ +|.++||
T Consensus 111 P~Ik~yl~s~~~~~~p~~-~~~~~~~ 135 (140)
T d3gtub1 111 EKIAAYLQSDQFCKMPIN-NKMAQWG 135 (140)
T ss_dssp HHHHHHHHCHHHHTCBSS-CTTSSSS
T ss_pred HHHHHHHhccCCCCCCCC-CCccccC
Confidence 345566665421121122 7888887
No 9
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.02 E-value=32 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.6
Q ss_pred CccccccccchhHHHhhHHHhhhhh
Q psy9826 56 PAEKLSISQSSALAATGLIWSRYSL 80 (125)
Q Consensus 56 ppe~IS~~mt~aL~~~g~iw~R~a~ 80 (125)
++|.|-.+-|.+||+-|.+++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 26 ATDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999887764
No 10
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.74 E-value=98 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.9
Q ss_pred ccchhhhhCCCCCCceeecccccchh
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWG 44 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWg 44 (125)
+.+++..+++.= ...-+.+|+++||
T Consensus 107 P~ik~yl~s~~~-~~~p~~~~~a~~g 131 (133)
T d2c4ja1 107 EKISAYMKSSRF-LPRPVFSKMAVWG 131 (133)
T ss_dssp HHHHHHHHSTTC-CCCCSSCTTCSSS
T ss_pred HHHHHHHhCccc-CCCCCCCcccccC
Confidence 356777776532 2355889999998
Done!