BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9827
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 129/273 (47%), Gaps = 53/273 (19%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
+G+N++EV++GIIPNK RAE+LA+ Q+ K +A R
Sbjct: 142 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 198
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
+D+ +KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD
Sbjct: 199 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 247
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGK 546
+YQ +K G D G ++ K+ + Q K ++ D
Sbjct: 248 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALL---DVTPNAV 293
Query: 547 DSM----------YQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTI 582
D + + D K+ VK KL+E+S KL K H+FT TI
Sbjct: 294 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 353
Query: 583 TLSGV-DVWYRKTRELIEKQQSSPVWISETKSN 614
L+ + D WY +E I++QQ+ VW+SE K++
Sbjct: 354 NLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 386
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 52 RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+ + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D I REE
Sbjct: 3 KLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62
Query: 112 AVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRI--MSANGLSLENVEY 167
AVLFLL L +++ ++ Q ++D Y +V S GDSF+I+ + S GLS E
Sbjct: 63 AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEV 122
Query: 168 GTAVQVLRDS--GSTVTLKV 185
V L + GS + +++
Sbjct: 123 FRVVDTLYNGKLGSWLAIRI 142
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 47/266 (17%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
+G+N++EV++GIIPNK RAE+LA+ Q+ K +A R
Sbjct: 150 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK---TAGGDRADFWRFRGLRSSKRNLRKSR 206
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
+D+ +KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD
Sbjct: 207 --EDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 255
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMY----QGKDSM 542
+YQ +K G D G ++ K+ + Q K ++ D +
Sbjct: 256 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRL 304
Query: 543 YQGK---DSMYQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTITLS 585
+ ++ D K+ VK KL+E+S KL K H+FT TI L+
Sbjct: 305 NYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN 364
Query: 586 GV-DVWYRKTRELIEKQQSSPVWISE 610
+ D WY +E I++QQ+ VW+SE
Sbjct: 365 SMNDGWYGALKEAIQQQQNQLVWVSE 390
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 43 SIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
S + P + + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++
Sbjct: 2 SHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNV 61
Query: 103 DMKGITREEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRI--MSAN 158
D I REEAVLFLL L +++ ++ Q ++D Y +V S GDSF+I+ + S
Sbjct: 62 DFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY 121
Query: 159 GLSLENVEYGTAVQVLRDS--GSTVTLKV 185
GLS E V L + GS + +++
Sbjct: 122 GLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 120/266 (45%), Gaps = 84/266 (31%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXD 426
+G+N++EV++GIIPNK RAE+LA+ Q+ TK
Sbjct: 47 IGKNHKEVERGIIPNKNRAEQLASVQYVQTK----------------------------- 77
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFN 486
FPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD
Sbjct: 78 -------------FPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD--------- 115
Query: 487 FILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMY----QGKDSM 542
+YQ +K G D G ++ K+ + Q K ++ D +
Sbjct: 116 -----------IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRL 164
Query: 543 YQGK---DSMYQGKDIKKEVKI--------------KLFEQSQKLEKVWSHVFTGTITLS 585
+ ++ D K+ VK KL+E+S KL K H+FT TI L+
Sbjct: 165 NYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN 224
Query: 586 GV-DVWYRKTRELIEKQQSSPVWISE 610
+ D WY +E I++QQ+ VW+SE
Sbjct: 225 SMNDGWYGALKEAIQQQQNQLVWVSE 250
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 49 PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
P + + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D I
Sbjct: 1 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII 60
Query: 109 REEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRI--MSANGLSLEN 164
REEAVLFLL L +++ ++ Q ++D Y +V S GDSF+I+ + S GLS
Sbjct: 61 REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNK 120
Query: 165 VEYGTAVQVLRDS--GSTVTLKV 185
E V L + GS + +++
Sbjct: 121 GEVFRVVDTLYNGKLGSWLAIRI 143
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATK 397
+G+N++EV++GIIPNK RAE+LA+ Q+ K
Sbjct: 143 IGKNHKEVERGIIPNKNRAEQLASVQYTLPK 173
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 45 FFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
+ P + + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D
Sbjct: 24 MILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 83
Query: 105 KGITREEAVLFLLSL--QDQIHLIVQNRRDEYEHVVASQRG 143
I REEAVLFLL L +++ ++ Q ++D Y +V S G
Sbjct: 84 TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 52 RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+ + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D I REE
Sbjct: 6 KLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 65
Query: 112 AVLFLLSL--QDQIHLIVQNRRDEYEHVV 138
AVLFLL L +++ ++ Q ++D Y +V
Sbjct: 66 AVLFLLDLPKGEEVTILAQKKKDVYRRIV 94
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK 261
V L KSR +++G+ LG++IFVKE+T + L EGD++LKIN T+ MS+
Sbjct: 4 VLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 262 EARKLIDSSKEKLSLTIRREVP 283
+ARKLI+ S+ KL L + R++
Sbjct: 61 DARKLIEKSRGKLQLVVLRDLE 82
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 368 GRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXX----XXXXXXXXXX 423
GR+ +E ++GIIPN++RAE+LA+ + + S G
Sbjct: 55 GRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKT 114
Query: 424 XXDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKF 479
+D+ ++P YERV LR F RPVV+ GPVAD+A KL + PD+F
Sbjct: 115 TQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAXQKLTAEXPDQF 170
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGV-DVWYRKTRELIEKQQSSPVWISE 610
+L+ Q+QKL K SH+FT TI L+G D WY++ + +I +QQ+ P+W +E
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAE 299
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 202 VQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVK 261
V L KSR +++G+ LG++IFVKE+T + L EGD++LKIN T+ MS+
Sbjct: 4 VLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 262 EARKLIDSSKEKLSLTIRRE 281
+ARKLI+ S+ KL L + R+
Sbjct: 61 DARKLIEKSRGKLQLVVLRD 80
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
+V L KSRK +++G+ L + IFVKE++ ++ + + EGDV+LKIN T+ MS+
Sbjct: 2 KVTLVKSRKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 58
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
+A+ LI+ SK KL + ++R+
Sbjct: 59 TDAKTLIERSKGKLKMVVQRD 79
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 53 FITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+ +K G+RL IFV + S A+ G +Q GD +LK+N + ++ +
Sbjct: 5 LVKSRKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 60
Query: 112 AVLFLLSLQDQIHLIVQNRRDEYE 135
A + + ++ ++VQ RDE E
Sbjct: 61 AKTLIERSKGKLKMVVQ--RDELE 82
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
+V L KSRK +++G+ L + IFVKE++ ++ + + EGDV+LKIN T+ MS+
Sbjct: 3 KVTLVKSRKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 59
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
+A+ LI+ SK KL + ++R+
Sbjct: 60 TDAKTLIERSKGKLKMVVQRD 80
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
+V L KS K +++G+ L + IFVKE++ ++ + + EGDV+LKIN T+ MS+
Sbjct: 5 KVTLVKSAKNEEYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSL 61
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
+A+ LI+ SK KL + ++R+
Sbjct: 62 TDAKTLIERSKGKLKMVVQRD 82
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 37 GSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
GSP+ + +PR I + + +G + GG + GIF++ + G PA L G L+ G
Sbjct: 1 GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
D+IL VN +D++ + E+A + L + + +I Q + +EY A+ R DS
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L N + A L+++G TVT+
Sbjct: 54 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 37 GSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
GSP+ + +PR I + + +G + GG + GIF++ + G PA L G L+ G
Sbjct: 1 GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
D+IL VN +D++ + E+A + L + + +I Q + +EY A+ R +S
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVNS 112
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L N + A L+++G TVT+
Sbjct: 54 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 30 FVTAVQPGSP--------DLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-NKVGIFVTAV 79
+ TA+ P SP DL + +PR I + + +G + GG + GIF++ +
Sbjct: 279 YPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFI 338
Query: 80 QPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
G PA L G L+ GD+IL VN +D++ + E+A + L + + +I Q + +EY
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEY 394
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 38/201 (18%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
+YE V+ + RP+++ GP D A D LL +FPDKF + R ++
Sbjct: 519 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 578
Query: 487 FI---------------LWATIKDTAMY----QSSKEPGMYQGKDSMYQGKDSMYQGKES 527
F+ + A ++ +Y QS +E QGK + + + ++
Sbjct: 579 FVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAE-QGKHCILDVSANAVRRLQA 637
Query: 528 MYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGV 587
+ +++ S+ ++ + K I +E K F+++ KLE+ ++ F+ +
Sbjct: 638 AHLHPIAIFIRPRSL---ENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSF 694
Query: 588 DVWYRKTRELIEKQQSSPVWI 608
+ Y K + +IE +W+
Sbjct: 695 EEIYHKVKRVIEDLSGPYIWV 715
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 54 ITFQKEGS-VGIRLTGGN---KVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
IT ++ S +G + GG +G IF+T + PG A+ G L+ D IL VN++D+
Sbjct: 63 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 122
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV-------------------VASQR--- 142
+ +T AV L + L V R+ E V V +Q
Sbjct: 123 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPG 182
Query: 143 -----------GDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
G + H +++ D+I++ N + LE+V + AV L+++ V LKV +
Sbjct: 183 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 242
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 23 GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPG 82
G+ V ++V +P + + I ++ P+ + F G VG + G+ I+VT + G
Sbjct: 137 AGSIVRLYVMRRKPPAEKVMEIKLIK-GPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEG 194
Query: 83 SPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
A G LQ GDKIL VN + ++ + E+AV L + D ++L V + Y
Sbjct: 195 GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAY 247
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR P
Sbjct: 101 AAAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAE 153
Query: 198 QTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLL 248
+ + ++L K K F I G N I+V ++ ++ A+ +L GD +L
Sbjct: 154 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKIL 210
Query: 249 KINN 252
+N+
Sbjct: 211 AVNS 214
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L N + A L+++G TVT+
Sbjct: 347 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR + K + +G + GG + GIFV+ + G PA L G LQ GD+IL VN +D++G
Sbjct: 3 EPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
+ E+A L + +I Q + ++Y
Sbjct: 63 ASHEQAAAALKGAGQTVTIIAQYQPEDY 90
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L + A L+ +G TVT+
Sbjct: 43 SGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTI 81
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR I K + +G + GG + GIFV+ + G PA L G L+ GD+IL VN ++++
Sbjct: 15 EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
T E+A L + ++ Q R +EY +S
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESS 108
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
S ++ DRI+S NG++L N + A L+ +G +VT+ + R
Sbjct: 55 SGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR 98
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 47 VEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVND 101
VE DP + F G VG R GN GIFVT VQP PAS + LQPGDKI++ N
Sbjct: 17 VEKDPE-LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANG 71
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIV 127
I +AV L + Q+ + LI+
Sbjct: 72 YSFINIEHGQAVSLLKTFQNTVELII 97
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
D+I+ ANG S N+E+G AV +L+ +TV L + R +
Sbjct: 63 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 24/149 (16%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGST--VTLKVRRRIVLPASPEPQTLRVQLS 205
+++ DR+M+ NG+ E+ + A Q+LRDS T VTL++ + P T V+L
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLP 114
Query: 206 KSRKKDDFGIIL--------GNKIFVKE-----VTHRLDNNASPGTHQLAEGDVLLKINN 252
K + + GI + G+ + + + V HR GT +L GD LL I+N
Sbjct: 115 K-KHSVELGITISSPSSRKPGDPLVISDIKKGSVAHR------TGTLEL--GDKLLAIDN 165
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
D S+++A +++ ++ + L IR++
Sbjct: 166 IRLDSCSMEDAVQILQQCEDLVKLKIRKD 194
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 74 IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+ ++ ++ GS A G L+ GDK+L ++++ + + E+AV L +D + L + R+D
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI--RKD 194
Query: 133 E 133
E
Sbjct: 195 E 195
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 47 VEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVND 101
VE DP + F G VG R GN GIFVT VQP PAS + LQPGDKI++ N
Sbjct: 9 VEKDPE-LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANG 63
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIV 127
I +AV L + Q+ + LI+
Sbjct: 64 YSFINIEHGQAVSLLKTFQNTVELII 89
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
D+I+ ANG S N+E+G AV +L+ +TV L + R +
Sbjct: 55 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR I K + +G + GG + GIFV+ + G PA L G L+ GD+IL VN ++++
Sbjct: 12 EPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
T E+A L + ++ Q R +EY
Sbjct: 72 ATHEQAAAALKRAGQSVTIVAQYRPEEY 99
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
S ++ DRI+S NG++L N + A L+ +G +VT+ + R
Sbjct: 52 SGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR 95
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGGNKV-GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR I + + +G + GG GIF++ + G PA L G L+ GD+IL VN +D++
Sbjct: 11 EPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
+ E+A + L + + +I Q + +EY
Sbjct: 71 ASHEQAAIALKNAGQTVTIIAQYKPEEY 98
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L N + A L+++G TVT+
Sbjct: 51 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGGNK-VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR I + + +G + GG GIF++ + G PA L G L+ GD+IL VN +D++
Sbjct: 6 EPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139
+ E+A + L + + +I Q + +EY A
Sbjct: 66 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 98
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
S ++ D+I+S NG+ L N + A L+++G TVT+
Sbjct: 46 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 84
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 50 DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
DPR + K+ G +G+RL + GIFV VQ SPASL GL+ GD++L++N + G
Sbjct: 4 DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 108 TREEAVLFL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIK-----------VNDRIM 155
+ ++A L + ++I + +++R +E + + + H+ V D
Sbjct: 63 SSDKAHKVLKQAFGEKITMTIRDR--PFERTITMHKDSTGHVGFIFKNGKITSIVKDSSA 120
Query: 156 SANGLSLEN------------VEYGTAVQVLRDSGSTVTLKV 185
+ NGL E+ ++ +L SG+ VT+ +
Sbjct: 121 ARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 54 ITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
+ F G VG R GN GIFVT VQP PAS + LQPGDKI++ N I
Sbjct: 4 LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIE 59
Query: 109 REEAVLFLLSLQDQIHLIV 127
+AV L + Q+ + LI+
Sbjct: 60 HGQAVSLLKTFQNTVELII 78
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
D+I+ ANG S N+E+G AV +L+ +TV L + R + + Q +RV++ K
Sbjct: 44 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV---GNGAKQEIRVRVEK 96
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 54 ITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
+ F G VG R GN GIFVT VQP PAS + LQPGDKI++ N I
Sbjct: 5 LGFSISGGVGGR---GNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIE 60
Query: 109 REEAVLFLLSLQDQIHLIV 127
+AV L + Q+ + LI+
Sbjct: 61 HGQAVSLLKTFQNTVELII 79
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
D+I+ ANG S N+E+G AV +L+ +TV L + R + + Q +RV++ K
Sbjct: 46 DKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV---GNGAKQEIRVRVEK 97
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 51 PRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
PR +T +K +G + GG +++GIF++ V P S A GLQ GD++L VND+D +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQD 75
Query: 107 ITREEAVLFL 116
I +AV L
Sbjct: 76 IEHSKAVEIL 85
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 62 VGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
+G + GG++ VGI+V+ V+PGS A +GL+ GD+IL+VND + +T EAV
Sbjct: 23 LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAV 76
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 50 DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
DPR + K+ G +G+RL + GIFV VQ SPASL GL+ GD++L++N + G
Sbjct: 4 DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 108 TREEAVLFL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIK-----------VNDRIM 155
+ ++A L + ++I +++R +E + + + H+ V D
Sbjct: 63 SSDKAHKVLKQAFGEKITXTIRDR--PFERTITXHKDSTGHVGFIFKNGKITSIVKDSSA 120
Query: 156 SANGLSLEN------------VEYGTAVQVLRDSGSTVTLKV 185
+ NGL E+ ++ +L SG+ VT+ +
Sbjct: 121 ARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 46 FVEPDPRFITFQKEGS-VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
+VE +PR + QK +GI + G K GI+V+ V GS A GL+ GD++L+ N +++
Sbjct: 16 YVE-EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINL 74
Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
+ T ++A L + D I ++ Q
Sbjct: 75 RSATEQQARLIIGQQCDTITILAQ 98
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 42 FSIFFVEPDPRFITFQKEGSVGIRLTG-------GNKVGIFVTAVQPGSPASLQG-LQPG 93
FS++ VE + S+GI ++G G GI+V ++ PGS A+L G ++P
Sbjct: 11 FSLYSVE----LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPN 66
Query: 94 DKILKVNDMDMKGITREEAVLFL 116
DKIL+V+D++++G+ + + V L
Sbjct: 67 DKILRVDDVNVQGMAQSDVVEVL 89
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 104
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 61 SVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
S+G+ + GG + +GI++T V PGS A GL+ GD+IL+VN I +EAV L S
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 119 LQDQIHLIV 127
+ HLI+
Sbjct: 93 SR---HLIL 98
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 44 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 83
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
GI+VT V G PA + GLQ GDKI++VN DM +T ++A
Sbjct: 55 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 94
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 438 SKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--------------- 482
SK +YE V+ + + RPV++ GP+ D D L+ +FPDKF +
Sbjct: 90 SKVLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDG 149
Query: 483 RKFNFI-----LWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKD---- 533
R ++F+ + I++ ++ + G S+ + +GK +
Sbjct: 150 RDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGT-SVQSVRAVAEKGKHCILDVSGNAIK 208
Query: 534 ----------SMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTIT 583
S++ SM ++ M K + E K FE++ +LE+ ++ FT +
Sbjct: 209 RLQIAQLYPISIFIKPKSM---ENIMEMNKRLTDEQARKTFERAVRLEQEFTEHFTAIVQ 265
Query: 584 LSGVDVWYRKTRELIEKQQSSPVWI 608
++ Y + +++IE+Q +W+
Sbjct: 266 GDTLEDIYNQVKQIIEEQSGPYIWV 290
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 38/157 (24%)
Query: 69 GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G+ IF+T + PG A+ G L+ D IL VN++D++ +T AV L + L V
Sbjct: 39 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 98
Query: 128 QNRRDEYEHV-----VASQRGDSFHI--------------------------------KV 150
R+ E V + +G F I ++
Sbjct: 99 MRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQI 158
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
D+I++ N + LE+V + AV L+++ V LKV +
Sbjct: 159 GDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR P +
Sbjct: 55 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 107
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+ ++L K K F I G N I+V ++ ++ A+ +L GD +L
Sbjct: 108 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 164
Query: 250 INN 252
+N+
Sbjct: 165 VNS 167
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 23 GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPG 82
G+ V ++V +P + + I ++ P+ + F G VG + G+ I+VT + G
Sbjct: 90 AGSIVRLYVMRRKPPAEKVMEIKLIK-GPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEG 147
Query: 83 SPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
A G LQ GDKIL VN + ++ + E+AV L + D ++L V
Sbjct: 148 GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 193
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 59 EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL 117
E G L G + G F+ V+PGSPA L+ GD++++VN ++++G T + V +
Sbjct: 11 EQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIK 70
Query: 118 SLQDQIHLIVQNRRD 132
+++ Q L+V ++ D
Sbjct: 71 AVEGQTRLLVVDQED 85
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
+YE V+ + RP+++ GP D A D LL +FPDKF + R ++
Sbjct: 93 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 152
Query: 487 FILWATIKDTAMYQSSK--EPGMYQGK---DSMYQGKDSMYQGKESMYQGKDSMYQGKDS 541
F+ + K Q+ K E G Y S+ ++ QGK + + + +
Sbjct: 153 FVS-SREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA 211
Query: 542 MYQGKDSMY-----------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVW 590
+ +++ K I +E K F+++ KLE+ ++ F+ + +
Sbjct: 212 AHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 271
Query: 591 YRKTRELIEKQQSSPVWI 608
Y K + +IE +W+
Sbjct: 272 YHKVKRVIEDLSGPYIWV 289
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 442 AYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP---------------RKFN 486
+YE V+ + RP+++ GP D A D LL +FPDKF + R ++
Sbjct: 99 SYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 158
Query: 487 FILWATIKDTAMYQSSK--EPGMYQGK---DSMYQGKDSMYQGKESMYQGKDSMYQGKDS 541
F+ + K Q+ K E G Y S+ ++ QGK + + + +
Sbjct: 159 FVS-SREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQA 217
Query: 542 MYQGKDSMY-----------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVW 590
+ +++ K I +E K F+++ KLE+ ++ F+ + +
Sbjct: 218 AHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 277
Query: 591 YRKTRELIEKQQSSPVWI 608
Y K + +IE +W+
Sbjct: 278 YHKVKRVIEDLSGPYIWV 295
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 57 QKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE 110
+ +GS+GI +TGG GI+V A+ P A G + GD++L VN + ++G T +
Sbjct: 12 KTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK 71
Query: 111 EAVLFLLSLQDQIHLIVQ 128
+AV L + +HL+++
Sbjct: 72 QAVETLRNTGQVVHLLLE 89
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
I DR+++ NG+SLE + AV+ LR++G V L + +
Sbjct: 51 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 90
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 57 QKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITRE 110
+ +GS+GI +TGG GI+V A+ P A G + GD++L VN + ++G T +
Sbjct: 20 KTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK 79
Query: 111 EAVLFLLSLQDQIHLIVQ 128
+AV L + +HL+++
Sbjct: 80 QAVETLRNTGQVVHLLLE 97
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
I DR+++ NG+SLE + AV+ LR++G V L
Sbjct: 59 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 94
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 60 GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL 117
G +G + GG++ +GIFV+ V+ GS A GL GDKI +VN + ++ T AV L
Sbjct: 22 GRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLT 81
Query: 118 SLQDQIHLIVQ 128
S ++H++V+
Sbjct: 82 S-SSRLHMMVR 91
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 150 VNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
V D+I NGLSLE+ G+AV+VL S S + + VRR P+S
Sbjct: 56 VGDKITEVNGLSLESTTMGSAVKVL-TSSSRLHMMVRRMGSGPSS 99
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 54 ITFQKEGS-VGIRLTGGN---KVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
IT ++ S +G + GG +G IF+T + PG A+ G L+ D IL VN++D+
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV-------------------VASQR--- 142
+ +T AV L + L V R+ E V V +Q
Sbjct: 69 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPG 128
Query: 143 -----------GDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
G + H +++ D+I++ N + LE+V + AV L+++ V LKV +
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR P +
Sbjct: 48 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 100
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+ ++L K K F I G N I+V ++ ++ A+ +L GD +L
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 157
Query: 250 INN 252
+N+
Sbjct: 158 VNS 160
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGS 83
G+ V ++V +P + + I ++ P+ + F G VG + G+ I+VT + G
Sbjct: 84 GSIVRLYVMRRKPPAEKVMEIKLIK-GPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGG 141
Query: 84 PASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
A G LQ GDKIL VN + ++ + E+AV L + D ++L V
Sbjct: 142 AAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGGNKVG-----------IFVTAVQPGSPASLQG 89
+++F PR + +E S+GI + GG +G IF+ V SPA G
Sbjct: 17 NLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNG 76
Query: 90 -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
L+PGD+I++V+ MD++ + E+AV + + + +VQ+
Sbjct: 77 TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 53 FITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITRE 110
FI+ +G ++ G K GIF++ V+PGS ++ GL+ GD+I++VN +D + +
Sbjct: 6 FISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 65
Query: 111 EAVLFLLS 118
EAV L S
Sbjct: 66 EAVNVLKS 73
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 54 ITFQKEGS-VGIRLTGGN---KVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
IT ++ S +G + GG +G IF+T + PG A+ G L+ D IL VN++D+
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV-------------------VASQR--- 142
+ +T AV L + L V R+ E V V +Q
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPG 125
Query: 143 -----------GDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
G + H +++ D+I++ N + LE+V + AV L+++ V LKV +
Sbjct: 126 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR P +
Sbjct: 45 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR----KPPAEK 97
Query: 199 TLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+ ++L K K F I G N I+V ++ ++ A+ +L GD +L
Sbjct: 98 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGRLQIGDKILA 154
Query: 250 INN 252
+N+
Sbjct: 155 VNS 157
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGS 83
G+ V ++V +P + + I ++ P+ + F G VG + G+ I+VT + G
Sbjct: 81 GSIVRLYVMRRKPPAEKVMEIKLIK-GPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGG 138
Query: 84 PASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
A G LQ GDKIL VN + ++ + E+AV L + D ++L V
Sbjct: 139 AAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 183
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51 PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR T +K S G L + +K G F+ +V P SPA GL+ D+I++VN + M+G
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
+ V + + D+ L+V +R DE+
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEF 96
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 53 FITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITRE 110
FI+ +G ++ G K GIF++ V+PGS ++ GL+ GD+I++VN +D + +
Sbjct: 20 FISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 79
Query: 111 EAVLFLLS 118
EAV L S
Sbjct: 80 EAVNVLKS 87
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT++ G A G LQ GDK+L VN + ++ +T
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDN-SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
EEAV L + D ++L V Y
Sbjct: 72 EEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 62 VGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
+G + GG N GI+V+ ++ A+L G LQ GDKIL VN D+K + ++AV
Sbjct: 22 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 114 LFLLSLQDQIHLIVQNR 130
+ + L VQ+R
Sbjct: 82 DLFRNAGYAVSLRVQHR 98
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
D+I+S NG L+N+ + AV + R++G V+L+V+ R
Sbjct: 62 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 98
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 62 VGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
+G + GG N GI+V+ ++ A+L G LQ GDKIL VN D+K + ++AV
Sbjct: 20 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 114 LFLLSLQDQIHLIVQNR 130
+ + L VQ+R
Sbjct: 80 DLFRNAGYAVSLRVQHR 96
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
D+I+S NG L+N+ + AV + R++G V+L+V+ R+
Sbjct: 60 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 97
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
NDR+ NG+S++NVE+ AVQ LR SG + +RR+
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 35 QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG 89
+PG D+F + + D S+GI +TGG GI+V AV P A G
Sbjct: 2 KPG--DIFEVELAKNDN---------SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDG 50
Query: 90 -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
+ GD++L VN + ++G T ++AV L + +HL+++
Sbjct: 51 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 90
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
I DR+++ NG+SLE + AV+ LR++G V L
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 87
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ NDR+ NG+S++NVE+ AVQ LR SG + +RR+
Sbjct: 59 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 99
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN + ++ +T
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
EEAV L + D ++L V Y
Sbjct: 72 EEAVTALKNTSDFVYLKVAKPTSMY 96
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+++ D++++ N +SLE V + AV L+++ V LKV +
Sbjct: 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN++ ++ +T
Sbjct: 21 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 79
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
EEAV L + D ++L V Y
Sbjct: 80 EEAVTALKNTSDFVYLKVAKPTSMY 104
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR T +K S G L + +K G F+ +V P SPA GL+ D+I++VN + M+G
Sbjct: 5 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 64
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
+ V + + D+ L+V +R E
Sbjct: 65 HGDVVSAIRAGGDETKLLVVDRETE 89
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 46 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 86
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62 VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
+GI +TGG + G I ++ + PG PA GL GD IL VN ++++ +EAV L
Sbjct: 41 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
Query: 119 LQDQIHLIV 127
+ +I V
Sbjct: 101 QRGEIEFEV 109
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 41 LFSIFFVEPDPRFITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPASLQG-LQ 91
LF + VE +K+G S+GIR+ G G GI+V +V PGS A G +Q
Sbjct: 13 LFETYNVE------LVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQ 66
Query: 92 PGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
DKI+ V+ ++++G + V L + +HL + R+
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLK-VRRRIVLPASP-EPQTLRVQL 204
HI+VND+I++ +G++++ V+VLR++G V L VRR+ SP EP + R +
Sbjct: 64 HIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTV 123
Query: 205 S 205
S
Sbjct: 124 S 124
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 35 QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKV-----GIFVTAVQPGSPASLQG 89
+PG D+F + + D S+GI +TGG GI+V AV P A G
Sbjct: 2 KPG--DIFEVELAKND---------NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDG 50
Query: 90 -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
+ GD++L VN + ++G T ++AV L + +HL+++
Sbjct: 51 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 90
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
I DR+++ NG+SLE + AV+ LR++G V L + +
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN++ ++ +T
Sbjct: 9 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH 67
Query: 110 EEAVLFLLSLQDQIHLIV 127
EEAV L + D ++L V
Sbjct: 68 EEAVTALKNTSDFVYLKV 85
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ NDR+ NG+S++NVE+ AVQ LR SG + +RR+
Sbjct: 56 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
NDR+ NG+S++NVE+ AVQ LR SG + +RR+
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRK 96
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 61 SVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEA 112
+G + GG N GI+V+ ++ A+L G LQ GDKIL VN D+K + ++A
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 113 VLFLLSLQDQIHLIVQNR 130
V + + L VQ+R
Sbjct: 89 VDLFRNAGYAVSLRVQHR 106
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
D+I+S NG L+N+ + AV + R++G V+L+V+ R+ + P
Sbjct: 70 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGP 113
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51 PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR T +K S G L + +K G F+ +V P SPA GL+ D+I++VN + M+G
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
+ V + + D+ L+V +R DE+
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEF 96
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62 VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
+GI +TGG + G I ++ + PG PA GL GD IL VN ++++ +EAV L
Sbjct: 16 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 75
Query: 119 LQDQIHLIV 127
+ +I V
Sbjct: 76 QRGEIEFEV 84
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 50 DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+PR + + + +G + GG + GIF++ + G PA L G L+ GD+I+ VN +D++
Sbjct: 7 EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEY 134
+ E+A L + + ++ Q R +EY
Sbjct: 67 ASHEQAAAALKNAGQAVTIVAQYRPEEY 94
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN + ++ +T
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
EEAV L + D ++L V Y
Sbjct: 72 EEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 51 PRFITFQKEGS-VGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR T +K S G L + +K G F+ +V P SPA GL+ D+I++VN + M+G
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 109 REEAVLFLLSLQDQIHLIVQNRR-DEY 134
+ V + + D+ L+V +R DE+
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEF 96
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 62 VGIRLTGGNKVG--IFVTAVQPGSPAS-LQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
+GI +TGG + G I ++ + PG PA GL GD IL VN ++++ +EAV L
Sbjct: 23 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 82
Query: 119 LQDQIHLIV 127
+ +I V
Sbjct: 83 QRGEIEFEV 91
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPG 93
+P S + I ++ P+ + F G VG + G+ I+VT + G A G LQ G
Sbjct: 4 KPVSEKIMEIKLIK-GPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIG 61
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
DK+L VN++ ++ +T EEAV L + D ++L V
Sbjct: 62 DKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 110/282 (39%), Gaps = 84/282 (29%)
Query: 370 NNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGXXXXXXXXXXXXXXXXXXDHWD 429
+N++ Q GI+P+K R E A+ + K E
Sbjct: 54 DNEDEQIGIVPSKRRWERKMRARDRSVKSE------------------------------ 83
Query: 430 DVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP------- 482
+++ + A +R+S+ + RPV++ GP+ D D L+ ++PDKF +
Sbjct: 84 -----ENVLSYEAVQRLSI---NYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRP 135
Query: 483 --------RKFNFI-----LWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMY 529
R ++F+ + I++ E G Y D++Y S+ +E
Sbjct: 136 KREYEVDGRDYHFVSSREQMERDIQNHLFI----EAGQYN--DNLY--GTSVASVREVAE 187
Query: 530 QGKDSMYQGKDS---------MY--------QGKDS-MYQGKDIKKEVKIKLFEQSQKLE 571
+GK + + +Y + DS M + + +E K +E++ K+E
Sbjct: 188 KGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKME 247
Query: 572 KVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKS 613
+ + FTG + ++ Y K + +I Q +W+ +S
Sbjct: 248 QEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKES 289
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 QPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPG 93
+P S + I ++ P+ + F G VG + G+ I+VT + G A G LQ G
Sbjct: 3 KPVSEKIMEIKLIK-GPKGLGFSIAGGVGNQHWPGDN-SIYVTKIIEGGAAHKDGKLQIG 60
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
DK+L VN++ ++ +T EEAV L + D ++L V
Sbjct: 61 DKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN + ++ +T
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH 71
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEY 134
EEAV L + D ++L V Y
Sbjct: 72 EEAVTALKNTSDFVYLKVAKPTSMY 96
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 54 ITFQKEG-SVGIRLTGG-----NKVG-IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+T KEG + G + GG NK + +T V+PG PA +G ++PGD++L V+ + +
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL 169
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
G T EA+ L + L+++
Sbjct: 170 GTTHAEAMSILKQCGQEATLLIE 192
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDK+L VN + ++ +T
Sbjct: 8 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH 66
Query: 110 EEAVLFLLSLQDQIHL 125
EEAV L + D ++L
Sbjct: 67 EEAVTALKNTSDFVYL 82
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 51 PRFITFQKE--GSVGIRLTGGNKVG-----------IFVTAVQPGSPASLQG-LQPGDKI 96
PR + +E S+GI + GG +G IF+ V SPA G L+PGD+I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
++V+ MD++ + E+AV + + + +VQ+
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL 119
G G T + ++ V GSPA GL+ GD+IL VN++++K + E+ V +
Sbjct: 11 GRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC 70
Query: 120 QDQIHLIV 127
+H+++
Sbjct: 71 SGVLHMVI 78
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 54 ITFQKEGSV-GIRLTGG-----NKV-GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+T KEG+ G + GG NK + +T+V+PG PA +G ++PGD++L V+ + +
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
G T EA+ L + L+++
Sbjct: 67 GTTHAEAMSILKQCGQEAALLIE 89
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 56 FQKEGSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
++ G +GI + GG + GIF++ V PA+ G++ GDK+L+VN + ++G
Sbjct: 10 LRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGA 69
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRD 132
EAV L + + V R+
Sbjct: 70 EHHEAVEALRGAGTAVQMRVWRERE 94
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 38/58 (65%)
Query: 70 NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
++ G ++ +V PGSPA+ GL+ D++++VN +++G+ E V + + +D+ L+V
Sbjct: 26 SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
FV V SPA L GL PGD I VN ++++GI E V
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIV 78
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
FV V SPA L GL PGD I VN ++++GI E V
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIV 78
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
G V+ V P SPA L GL+ GD I ++ND + T+ + + LL + + +IV+
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
G V+ V P SPA L GL+ GD I ++ND + T+ + + LL + + +IV+
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
G V+ V P SPA L GL+ GD I ++ND + T+ + + LL + + +IV+
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
G V+ V P SPA L GL+ GD I ++ND + T+ + + LL + + +IV+
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 48 EPDPRFITFQKEGSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKV 99
E + ++ G +GI + GG + GIF++ V PA+ G++ GDK+L+V
Sbjct: 14 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEV 73
Query: 100 NDMDMKGITREEAV 113
N + ++G EAV
Sbjct: 74 NGVALQGAEHHEAV 87
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 32 TAVQPGSPDLF--SIFFVE----PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPA 85
+ V G+ +L+ S+ VE P+ + F G VG + G+ I+VT + G A
Sbjct: 9 SGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDN-SIYVTKIIDGGAA 67
Query: 86 SLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G LQ GD++L VN+ ++ +T EEAV L + + ++L V
Sbjct: 68 QKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
++V DR++ N SLE V + AV +L+++ V LKV +
Sbjct: 73 LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 62 VGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ 120
+G + GG G+ V + PG A G LQ GD ILK+ +++G+T E+ L +
Sbjct: 28 LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG 87
Query: 121 DQIHLIV 127
+ + ++V
Sbjct: 88 NSVRMLV 94
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 51 PRFITFQK-EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L G K+G ++ V+PGSPA GL GD++++VN +++ T
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
Query: 109 REEAVLFLLSLQDQIHLIV 127
++ V + + + + L+V
Sbjct: 64 HQQVVSRIRAALNAVRLLV 82
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 51 PRFITFQK-EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L G K+G ++ V+PGSPA GL GD++++VN +++ T
Sbjct: 3 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 62
Query: 109 REEAVLFLLSLQDQIHLIV 127
++ V + + + + L+V
Sbjct: 63 HQQVVSRIRAALNAVRLLV 81
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 51 PRFITFQK-EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L G K+G ++ V+PGSPA GL GD++++VN +++ T
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
Query: 109 REEAVLFLLSLQDQIHLIV 127
++ V + + + + L+V
Sbjct: 64 HQQVVSRIRAALNAVRLLV 82
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 51 PRFITFQK-EGSVGIRLTG-GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L G K+G ++ V+PGSPA GL GD++++VN +++ T
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
Query: 109 REEAVLFLLSLQDQIHLIV 127
++ V + + + + L+V
Sbjct: 64 HQQVVSRIRAALNAVRLLV 82
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G VG + G+ I+VT + G A G LQ GDKIL VN + ++ +
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDN-SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 71
Query: 110 EEAVLFLLSLQDQIHLIV 127
E+AV L + D ++L V
Sbjct: 72 EDAVAALKNTYDVVYLKV 89
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+++ D+I++ N + LE+V + AV L+++ V LKV +
Sbjct: 52 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 56 FQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVL 114
F G VG + G+ I+VT + G A G LQ GDK+L VN++ ++ +T EEAV
Sbjct: 17 FSIAGGVGNQHWPGDN-SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVT 75
Query: 115 FLLSLQDQIHLIV 127
L + D ++L V
Sbjct: 76 ALKNTSDFVYLKV 88
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
P+ + F G +G + G+ I++T + G A G LQ GD++L VN+ +++ +
Sbjct: 13 PKGLGFSIAGGIGNQHIPGDN-SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 71
Query: 110 EEAVLFLLSLQDQIHLIV 127
EEAV L + D ++L V
Sbjct: 72 EEAVASLKNTSDMVYLKV 89
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+++ DR+++ N +L++V + AV L+++ V LKV +
Sbjct: 52 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 51 PRFITFQKEG--SVGIRLTGGNKV-----------GIFVTAVQPGSPAS-LQGLQPGDKI 96
PR + +E S+GI + GG V GIF+ V SPA L+ GDKI
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
L+V+ +D++ + EAV + + + + IVQ+
Sbjct: 76 LEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 140 SQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
S G + +K D+I+ +G+ L+N + AV+ ++++G+ V V+
Sbjct: 61 SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
FV V SPA L GL PGD I VN ++++GI E V
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIV 78
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 69 GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G+ GIF+T + PG A+ G L+ D IL+VN++D+ ++ +AV L + L V
Sbjct: 36 GDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYV 95
Query: 128 QNRR 131
+ RR
Sbjct: 96 RRRR 99
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++VND I+ N + + V + AV+ L+++GS V L VRRR
Sbjct: 58 LRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRR 98
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 48 EPDPRFITFQKEGSVGIRL-----TGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
EP+ +T +K+ +G+ + G +K+GI+V +V G A + G L GD++L V+
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQN----RRDEY 134
+ G+++E A + + L V RR+ Y
Sbjct: 69 RSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRREWY 105
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
V+AV PG A G++ GD+IL+VN ++++G T ++ V + + + ++ L V + E
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVGGES 105
Query: 135 E 135
E
Sbjct: 106 E 106
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 48 EPDPRFITFQKEGSVGIRL-----TGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
EP+ +T +K+ +G+ + G +K+GI+V +V G A + G L GD++L V+
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 102 MDMKGITREEA 112
+ G+++E A
Sbjct: 63 RSLVGLSQERA 73
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 48 EPDPRFITFQKEGSVGIRLTGGNKVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
+P R IT KE +G+++ GG +++ V PG G L+PGD+++ +N
Sbjct: 13 DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE 72
Query: 103 DMKGITREEA 112
M G++ EEA
Sbjct: 73 SMIGVSFEEA 82
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim), Ms0793
From Homo Sapiens
Length = 90
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
GIFV +V+ GSPA LQ D+I+ +N+ +E + Q+ HL++ RR
Sbjct: 29 GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 48 EPDPRFITFQKEGSVGIRL-----TGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
EP+ +T +K+ +G+ + G +K+GI+V +V G A + G L GD++L V+
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 102 MDMKGITREEA 112
+ G+++E A
Sbjct: 63 RSLVGLSQERA 73
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
GI+V AV P A G + GD++L VN + ++G T ++AV L + +HL+++
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 99
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
I DR+++ NG+SLE + AV+ LR++G V L + +
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
V+AV PG A G++ GD+IL+VN ++++G T ++ V + + + ++ L V
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 57 QKEGSVGIRLT-----GGNKV-----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+ +GS+GI +T GG GI+V A+ P A G + GD++L VN + ++
Sbjct: 12 KTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLE 71
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
G T ++AV L + +HL+++
Sbjct: 72 GATHKQAVETLRNTGQVVHLLLE 94
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL 183
I DR+++ NG+SLE + AV+ LR++G V L
Sbjct: 56 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 91
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 48 EPDPRFITFQKEGSVGIRL-----TGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
EP+ +T +K+ +G+ + G +K+GI+V +V G A + G L GD++L V+
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 102 MDMKGITREEA 112
+ G+++E A
Sbjct: 69 RSLVGLSQERA 79
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 29/38 (76%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
+KV DRI++ NG S+ N+ + V++++D+G +VTL++
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQD-QIHLIVQ 128
GIF+ + P SPA L G L+ GD+IL +N D++ T E+AV+ L+ D +I L +Q
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST-EQAVIDLIKEADFKIELEIQ 94
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 76 VTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
V+AV PG A G++ GD+IL+VN ++++G T ++ V + + + ++ L V
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 62 VGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM-KGITREEAVLFLLSL 119
VG+R ++GIFV +Q GS A G L+ D+IL +N + + IT ++A+ L
Sbjct: 39 VGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA 98
Query: 120 QDQIHLIV 127
+D + L++
Sbjct: 99 KDTVQLVI 106
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 54 ITFQKEGSVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
+ +K +GI + G + GI++ ++ G + G ++PGD +L+VNDM+ + ++
Sbjct: 11 LNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS 70
Query: 109 REEAVLFLLSLQDQIH 124
++AV L+D +H
Sbjct: 71 NDDAVRV---LRDIVH 83
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 74 IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
I+++ V PG A G L+ GD++L VN + ++G E+AV L + Q + L+V++
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 50 DPRFITFQKEGS-VGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+PR + + + +G + GG + GIF++ + G PA L G L+ GD+I+ VN +D++
Sbjct: 4 EPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 32 TAVQPGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPA 85
+ V G+ +L+ F P + IT ++ +G + GG + I+V V A
Sbjct: 9 SGVDLGTENLY--FQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAA 66
Query: 86 SLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
S G L+ GD+I+ VN ++G+T EEAV L + + L+V
Sbjct: 67 SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
+K D+I++ NG SLE V + AV +L+ + TVTL V
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124
GI++ ++ G + G ++PGD +L+VNDM+ + ++ ++AV L+D +H
Sbjct: 34 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV---LRDIVH 83
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124
GI++ ++ G + G ++PGD +L+VNDM+ + ++ ++AV L+D +H
Sbjct: 34 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV---LRDIVH 83
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 58 KEGSVGIRLTGG--NKVGIFVTAVQPGSPASL--QGLQPGDKILKVNDMDMKGITREEAV 113
+ G G + GG K+ + V+ V PG+PA L L GD+++ +N D+ T ++ V
Sbjct: 14 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 73
Query: 114 LFL 116
LF+
Sbjct: 74 LFI 76
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A+Q G ++VND I+ N + + +V + AV+ L+++GS V L V+RR
Sbjct: 54 AAQDG---RLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRR 100
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124
GI++ ++ G + G ++PGD +L+VNDM+ + ++ ++AV L+D +H
Sbjct: 34 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV---LRDIVH 83
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 58 KEGSVGIRLTGG--NKVGIFVTAVQPGSPASL--QGLQPGDKILKVNDMDMKGITREEAV 113
+ G G + GG K+ + V+ V PG+PA L L GD+++ +N D+ T ++ V
Sbjct: 25 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 84
Query: 114 LFL 116
LF+
Sbjct: 85 LFI 87
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
GIF++ V P A G L+ G ++L+VN + G+T EAV L S+ D + ++V
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 143 GDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
G ++V R++ N SL + +G AVQ+LR G T+T+ V
Sbjct: 58 GRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 62 VGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL- 119
VG ++T ++ F+T V+ GS A G L+PGD++L+ N ++G T EE +L
Sbjct: 55 VGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESK 114
Query: 120 -QDQIHLIV 127
+ Q+ L+V
Sbjct: 115 PEPQVELVV 123
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124
GI++ ++ G + G ++PGD +L+VNDM+ + ++ ++AV L+D +H
Sbjct: 34 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV---LRDIVH 83
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 51 PRFITFQKEGSVGIRL---TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
PR + +K GS G G + G + ++PGSPA GL+ D ++ VN ++ +
Sbjct: 6 PRVVVIKK-GSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 64
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDEYEH 136
+ V + DQ L+V ++ E H
Sbjct: 65 DHDGVVEMIRKGGDQTTLLVLDKELERPH 93
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A+Q G ++VND I+ N + +V + AV+ L+++GS V L V+RR
Sbjct: 44 AAQDG---RLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKRR 90
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 69 GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G+ IF+T + PG A+ G L+ D IL VN++D++ +T AV L + L V
Sbjct: 28 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 87
Query: 128 QNRR 131
R+
Sbjct: 88 MRRK 91
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR
Sbjct: 44 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 90
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 69 GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G+ IF+T + PG A+ G L+ D IL VN++D++ +T AV L + L V
Sbjct: 28 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 87
Query: 128 QNRR 131
R+
Sbjct: 88 MRRK 91
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR
Sbjct: 44 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 90
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 52 RFITFQKEGSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
R EG +G+ + GG + G+F++ + G A GLQ GD+I+++N + T
Sbjct: 89 RLDRLHPEG-LGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTH 147
Query: 110 EEAV 113
EE +
Sbjct: 148 EEVI 151
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 136 HVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
H++ + DS ++V D I+ NG S+ + + + ++R + TV++KVR ++P
Sbjct: 116 HLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKVRHIGLIPVKS 174
Query: 196 EP 197
P
Sbjct: 175 SP 176
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 58 KEGSVGIRLTGG--NKVGIFVTAVQPGSPASL--QGLQPGDKILKVNDMDMKGITREEAV 113
+ G G + GG K+ + V+ V PG+PA L L GD+++ +N D+ T ++ V
Sbjct: 27 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 86
Query: 114 LFL 116
LF+
Sbjct: 87 LFI 89
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 51 PRFITFQ-KEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
PR I F +EG +G L G V + + P ASL G + GD I+ + +D K +T
Sbjct: 16 PRGIHFTVEEGDLGFTLRGNTPVQVHF--LDPHCSASLAGAKEGDYIVSIQGVDCKWLTV 73
Query: 110 EEAVLFLLSL 119
E + L S
Sbjct: 74 SEVMKLLKSF 83
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 51 PRFITFQKEGS--VGIRLTGGNKV--GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
P +T QK+ +GI + GG + G+++ V +PA+L G + GD+I VN +K
Sbjct: 6 PGKVTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 65
Query: 106 GITREEAVLFLLSLQDQI 123
G T+ E + ++ ++
Sbjct: 66 GKTKVEVAKMIQEVKGEV 83
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGGNK-----VGIFVTAVQPGSPASLQG-LQPGD 94
+++F + + QK+ S+G+ + GG + I+V +V+PG S G ++ GD
Sbjct: 17 NLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGD 76
Query: 95 KILKVNDMDMKGITREEAVLFL 116
+L V+ +++ ++R EAV L
Sbjct: 77 ILLNVDGVELTEVSRSEAVALL 98
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 33 AVQPGS--PDLFSIFFVEPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA- 85
A +PG+ P L ++ R +T +K G +GI + GG NK+ I ++ + G A
Sbjct: 60 AAEPGAAPPQLPEALLLQR--RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAAD 117
Query: 86 SLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
+ L GD IL VN D+ T +EAV L ++ L V+
Sbjct: 118 QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 160
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 150 VNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
V D I+S NG L + + AVQ L+ +G V L+V+
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 160
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A+Q G ++VND I+ N + + V + AV+ L+++GS V L V RR
Sbjct: 45 AAQDG---RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 91
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 69 GNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
G+ IF+T + PG A+ G L+ D IL VN++D++ +T AV L + L V
Sbjct: 29 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 88
Query: 128 QNR 130
R
Sbjct: 89 MRR 91
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 62 VGIRLTGGNKVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDM-KGITREEAVLFLLSL 119
V +R KV IFV VQPGS A Q L+ D+IL +N + + I+ ++A+ L
Sbjct: 44 VALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT 103
Query: 120 QDQIHLIV 127
+ LIV
Sbjct: 104 TGSLRLIV 111
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 140 SQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++R + HI DRI++ N SL+ A+ +L+ +G TVTLK++++
Sbjct: 43 AERTGAIHI--GDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ 122
GI++ ++ G + G ++PGD +L+VND++ + ++ ++AV L + Q
Sbjct: 27 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQ 77
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ 122
GI++ ++ G + G ++PGD +L+VND++ + ++ ++AV L + Q
Sbjct: 30 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQ 80
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
IFV V+ G PA GL GD+I+KVN + G T + + + + + L V
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 43 SIFFVEPDPRFITFQKEGS--VGIRLTGGNKVG--IFVTAVQPGSPASLQG-LQPGDKIL 97
+++F P +T QK+ +GI + GG + +++ V +PA+L G + GD+I
Sbjct: 17 NLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEIT 76
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQI 123
VN +KG T+ E + ++ ++
Sbjct: 77 GVNGRSIKGKTKVEVAKMIQEVKGEV 102
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
I++ D+I++ +G +L+ AV+VLR +G TV L + RR
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
GIFV ++ S G +Q GD+I+ V+ +++G T ++AV +L Q L+ RR
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV-EVLRHTGQTVLLTLMRR 92
Query: 132 DE 133
E
Sbjct: 93 GE 94
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 53 FITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
+ + GS+G + GG + GIFV+ + PA+ +G LQ D+I++VN
Sbjct: 12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 102 MDMKGITREEAV 113
D+ T ++AV
Sbjct: 72 RDLSRATHDQAV 83
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++++DRI+ NG L + AV+ + + + ++V RR P+S
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
NDR++ NG +E+V + AVQ LR SG + V+R
Sbjct: 66 NDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
G F+ V PG PA G+Q GD+++ V ++G+ EE V
Sbjct: 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETV 71
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 51 PRFITFQKEGSVGIRL---TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
PR + +K GS G G + G + ++PGSPA GL+ D ++ VN ++ +
Sbjct: 3 PRVVVIKK-GSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 61
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRD 132
+ V + DQ L+V ++++
Sbjct: 62 DHDGVVEMIRKGGDQTTLLVLDKQE 86
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 54 ITFQKEGS-VGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
I ++EG+ +G L GG NKV I V V P AS +G +Q G+++L +N +KG
Sbjct: 20 ILHKEEGAGLGFSLAGGADLENKV-ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGT 78
Query: 108 TREEAVLFLLSLQDQIHLIVQNRR 131
T +A+ L ++ ++ R+
Sbjct: 79 THHDALAILRQAREPRQAVIVTRK 102
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124
GI++ ++ G + G ++PGD +L+VND++ + + ++AV L+D +H
Sbjct: 30 GIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV---LRDIVH 79
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 52 RFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA-SLQGLQPGDKILKVNDMDMKG 106
R +T +K G +GI + GG NK+ I ++ + G A + L GD IL VN D+
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 107 ITREEAV 113
T +EAV
Sbjct: 62 ATHDEAV 68
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 150 VNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
V D I+S NG L + + AVQ L+ +G V L+V+
Sbjct: 47 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 83
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 52 RFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA-SLQGLQPGDKILKVNDMDMKG 106
R +T +K G +GI + GG NK+ I ++ + G A + L GD IL VN D+
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 107 ITREEAV 113
T +EAV
Sbjct: 62 ATHDEAV 68
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 150 VNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
V D I+S NG L + + AVQ L+ +G V L+V+
Sbjct: 47 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 83
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 57 QKEGSVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+K +GI + G + GI++ ++ G + G ++PGD +L+VND++ + + ++
Sbjct: 10 EKYNFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDD 69
Query: 112 AVLFLLSLQDQIH 124
AV L+D +H
Sbjct: 70 AVRV---LRDIVH 79
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 57 QKEGSVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+K +GI + G + GI++ ++ G + G ++PGD +L+VND++ + + ++
Sbjct: 8 EKYNFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDD 67
Query: 112 AVLFLLSLQDQIH 124
AV L+D +H
Sbjct: 68 AVRV---LRDIVH 77
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 52 RFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA-SLQGLQPGDKILKVNDMDMKG 106
R +T +K G +GI + GG NK+ I ++ + G A + L GD IL VN D+
Sbjct: 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
Query: 107 ITREEAV 113
T +EAV
Sbjct: 66 ATHDEAV 72
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 150 VNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
V D I+S NG L + + AVQ L+ +G V L+V+
Sbjct: 51 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 66 LTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQ 122
+T G I+V + P A G L+ GD++++VN +D+ G ++EE V L S ++
Sbjct: 33 VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGT 92
Query: 123 IHLIVQNRRDEYEH 136
+ L+V R++E H
Sbjct: 93 VSLLV-FRQEEAFH 105
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 51 PRFITFQKEGS--VGIRLTGGNKVG--IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
P +T QK+ +GI + GG + +++ V +PA+L G + GD+I VN +K
Sbjct: 3 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 62
Query: 106 GITREEAVLFLLSLQDQI 123
G T+ E + ++ ++
Sbjct: 63 GKTKVEVAKMIQEVKGEV 80
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
G+++ + PGSPA+ G L GD+IL+VN + G+ AV
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAV 78
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVN 100
G++V ++P P L GL+P D++L+VN
Sbjct: 33 GVYVKNIRPAGPGDLGGLKPYDRLLQVN 60
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G + ++PGSPA GL+ D ++ VN ++ + + V + DQ L+V ++
Sbjct: 31 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEA 90
Query: 133 E 133
E
Sbjct: 91 E 91
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 63 GIRLTGGNKVG--IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112
G RL+GG + +T + PGS A+ L PGD IL ++ + +T +A
Sbjct: 18 GFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADA 69
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 67 TGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125
G K+GIFV V G A G +Q D+I++V+ + + G+T+ A L + + +
Sbjct: 106 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 165
Query: 126 IV 127
++
Sbjct: 166 VI 167
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
A+QR I+VND+I+ +G+SL V A VLR++ V + R
Sbjct: 123 AAQR--DGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 169
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 218 GNKIFVKEVT-HRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 276
G K F +T R+ + QL++GD+++ I+ TD M+ EA+ I S+ LSL
Sbjct: 19 GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL 78
Query: 277 TIRRE 281
T+++
Sbjct: 79 TLQKS 83
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 54 ITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+T G G RL GG + + ++ + PGS A+ L GD ++ ++ ++ +T E
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 112 A 112
A
Sbjct: 65 A 65
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 61 SVGIRLTGG-----NKVGIFVTAVQP-GSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
S+GI + GG V IF+ + P G A Q L+ GD+I+ + +G+T +AV
Sbjct: 37 SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN 96
Query: 115 FLLSLQDQIHLIV 127
L + I + V
Sbjct: 97 LLKNASGSIEMQV 109
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 218 GNKIFVKEVT-HRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 276
G K F +T R+ + QL++GD+++ I+ TD M+ EA+ I S+ LSL
Sbjct: 26 GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSL 85
Query: 277 TIRRE 281
T+++
Sbjct: 86 TLQKS 90
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 54 ITFQKEGSVGIRLTGGN--KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+T G G RL GG + + ++ + PGS A+ L GD ++ ++ ++ +T E
Sbjct: 12 VTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 71
Query: 112 A 112
A
Sbjct: 72 A 72
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 62 VGIRLTGGNKVGIFVTAV----QPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL 117
+G+ + GG + + + G+ A L GD+IL+VN +D++ + EEA+ L
Sbjct: 30 LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR 89
Query: 118 SLQDQIHLIVQNRRDE 133
++ L+V RDE
Sbjct: 90 QTPQKVRLVVY--RDE 103
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 68 GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126
G K+GIFV V G A G +Q D+I++V+ + + G+T+ A L + + + +
Sbjct: 31 GLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFV 90
Query: 127 V 127
+
Sbjct: 91 I 91
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
A+QR I+VND+I+ +G+SL V A VLR++ V + R
Sbjct: 47 AAQRDG--RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 93
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 62 VGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL 117
+G+ L G +++ IFV + P PA+ G ++ GD++L++N+ + G + + A +
Sbjct: 38 LGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK 97
Query: 118 SLQDQIHLIVQNRRDEYEHVVA 139
+ ++ L+ D + +
Sbjct: 98 TAPSKVKLVFIRNEDAVNQMAS 119
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG--STVTLKV 185
+++ DR+M+ NG+ E+ + A Q+LRDS S VTL++
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 51 PRFITFQKEGS--VGIRLTGGNKVG--IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
P +T QK+ +GI + GG + +++ V +PA+L G + GD+I VN +K
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 106 GITREEAVLFLLSLQDQI 123
G T+ E + ++ ++
Sbjct: 80 GKTKVEVAKMIQEVKGEV 97
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG--STVTLKV 185
+++ DR+M+ NG+ E+ + A Q+LRDS S VTL++
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 94
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 73 GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAV 113
GIF+T + PG A++ G L D +L+VN++D+ + AV
Sbjct: 35 GIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAV 76
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 67 TGGNKVGIFVTAVQP------------GSPASLQGLQPGDKILKVNDMDMKGIT-REEAV 113
T G G+ VTAV P G SL GL PGD L + +M + G+T R V
Sbjct: 254 TDGGAQGVLVTAVSPKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMVLNGVTVRGSIV 313
Query: 114 LFLLSLQDQI 123
L LQ+ +
Sbjct: 314 GTRLDLQESL 323
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 66 LTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQ 122
+T G I+V + P A G L+ GD++++VN +D+ G ++EE V L S ++
Sbjct: 52 VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGT 111
Query: 123 IHLIVQNRRD 132
+ L+V + D
Sbjct: 112 VSLLVFRQED 121
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125
V +V+ GSPA GL+ GD I +N + G+ + V LL ++I L
Sbjct: 37 VVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 50 DPRFITFQKEGSVGIRLT---GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
D I QK+ G+ L+ N G+FV+ + G A G L GD+IL VN D++
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 106 GITREEAVLFL 116
T+E L
Sbjct: 64 NATQEAVAALL 74
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 132 DEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGT---AVQVLRDSGSTVTLKVRRR 188
D E +A+Q G + NDR+++ NG +++YGT A Q+++ SG V L + R
Sbjct: 35 DLLEGGLAAQDG---RLSSNDRVLAING---HDLKYGTPELAAQIIQASGERVNLTIAR- 87
Query: 189 IVLPASPE 196
P PE
Sbjct: 88 ---PGKPE 92
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 66 LTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQ 122
+T G I+V + P A G L+ GD++++VN +D+ G ++EE V L S ++
Sbjct: 27 VTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGT 86
Query: 123 IHLIV 127
+ L+V
Sbjct: 87 VSLLV 91
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
G F+ VQ G PA L GL+ D I++VN +++ E+ V + S + L+V ++
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G F+ VQ G PA L GL+ D I++VN +++ E+ V + S + L+V ++
Sbjct: 28 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKA 87
Query: 133 E 133
+
Sbjct: 88 Q 88
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
+L GD++L IN T G++ +A + I + +L L IRR + P++
Sbjct: 56 RLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 63 GIRLTGGNKVG----IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL 117
G+ L GG V + V + PA G L+ GD +L +N +G+T +AV +
Sbjct: 25 GLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR 84
Query: 118 SLQDQIHLIVQ 128
+ Q+HL+++
Sbjct: 85 AGGPQLHLVIR 95
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++V D ++ NG S + + + AV+ +R G + L +RR + P+S
Sbjct: 57 LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G + ++ GSPA GL GD++L++N + + + V + + + L+V + D
Sbjct: 28 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD-GD 86
Query: 133 EYEHVVASQ 141
YE V +Q
Sbjct: 87 SYEKAVKNQ 95
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
DR++ NG+ ++ E+ V+++R SG++VTL V
Sbjct: 49 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 82
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 50 DPRFITFQKEGSVGIRLTGG--NKVG-IFVTAVQPGSPASLQ-GLQPGDKILKVNDMDMK 105
D R + +KEGS+ + L GG + VG + V+AV G A G+ GD+I+ +N +
Sbjct: 18 DVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT 77
Query: 106 GITREEA 112
T EA
Sbjct: 78 DYTLAEA 84
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVN 100
GI+V V P SP+ G+Q GD I+KVN
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVN 63
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
G F+ VQ G PA L GL+ D I++VN +++ E+ V + S + L+V ++
Sbjct: 32 GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 90
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 79 VQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125
V+ GSPA GL+ GD I +N + G+ E + LL +++ +
Sbjct: 40 VEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSI 86
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 61 SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFL 116
++GI LT NK I + ++P S G L PGD IL ++ M+ + EA L
Sbjct: 28 ALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87
Query: 117 LSLQDQIHL 125
S+ +++ L
Sbjct: 88 ASISEKVRL 96
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G + ++ GSPA GL GD++L++N + + + V + + + L+V + D
Sbjct: 39 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD-GD 97
Query: 133 EYEHVVASQ 141
YE V +Q
Sbjct: 98 SYEKAVKNQ 106
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
DR++ NG+ ++ E+ V+++R SG++VTL V
Sbjct: 60 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G + ++ GSPA GL GD++L++N + + + V + + + L+V + D
Sbjct: 27 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD-GD 85
Query: 133 EYEHVVASQ 141
YE V +Q
Sbjct: 86 SYEKAVKNQ 94
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
DR++ NG+ ++ E+ V+++R SG++VTL V
Sbjct: 48 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 71 KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
K+GIFV V G A G +Q D+I++V+ + + G+T+ A L + + + ++
Sbjct: 39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
A+QR I+VND+I+ +G+SL V A VLR++ V + R P+ P
Sbjct: 52 AAQR--DGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE--KPSGP 104
>pdb|2OUA|A Chain A, Crystal Structure Of Nocardiopsis Protease (Napase)
pdb|2OUA|B Chain B, Crystal Structure Of Nocardiopsis Protease (Napase)
Length = 188
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 51 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASL 87
P F+T GSVG +++ GN G+F +V PG+ A+
Sbjct: 28 PGFVTAGHCGSVGTQVSIGNGRGVFERSVFPGNDAAF 64
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 6 PRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPDLF 42
P F+T GSVG +++ GN G+F +V PG+ F
Sbjct: 28 PGFVTAGHCGSVGTQVSIGNGRGVFERSVFPGNDAAF 64
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 88 QGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
+ +QPGD+IL++ M+G+TR EA + +L D IV RR + + GDS
Sbjct: 74 ETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI-RRKSLQSKETTAAGDS 130
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 52 RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVND 101
R + +E G + NK + V +VQ GS A + GLQ G KI +N+
Sbjct: 20 RLLILPQEEDYGFDIEEKNK-AVVVKSVQRGSLAEVAGLQVGRKIYSINE 68
>pdb|2HGA|A Chain A, Solution Nmr Structure Of Conserved Protein Mth1368,
Northeast Structural Genomics Consortium Target Tt821a
Length = 125
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125
G+ + +V PGSPAS + L PG I +N M +T A L +S+ + I++
Sbjct: 26 GVQIDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINI 77
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 51 PRFITFQKEG-SVGIRL-TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR KEG S G L T K G+++T + P A G+ D +++VN +++ +
Sbjct: 9 PRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDAS 68
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
EE V + ++ ++ ++ + HV
Sbjct: 69 HEEVVEKVKKSGSRVMFLLVDKETDKRHV 97
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
G+ + V GSPA GL+PGD IL + + + + E V + Q Q L VQ RR
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQ--LAVQIRR 89
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 79 VQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI 123
V+ G PAS GL+ GD I VN + G+ E V +L +++
Sbjct: 43 VEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKV 87
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 62 VGIRLTGGNKV---GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL 117
+G+ + GG+ I + V A G L GD+IL+VN +D++ T +EA+ L
Sbjct: 17 LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76
Query: 118 SLQDQIHLIVQNRRDE 133
++ L + RDE
Sbjct: 77 QTPQRVRLTLY--RDE 90
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 145 SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
S +++ D I+S NG L + AVQ L+ +G V L+V+
Sbjct: 45 SRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVK 86
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 52 RFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITRE 110
R + QK+ G+ ++G N V FV +V+ A G+Q GD+I+KVN +
Sbjct: 9 RCVIIQKDDNGFGLTVSGDNPV--FVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHL 66
Query: 111 EAVLFLLSLQDQIHLIVQNR 130
E V + S + L VQ R
Sbjct: 67 EVVKLIKS-GSYVALTVQGR 85
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
+ +Q SPA GLQ GD + +N + +G T ++ V + S
Sbjct: 51 LICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>pdb|4IB2|A Chain A, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
pdb|4IB2|B Chain B, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
Length = 252
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 28/171 (16%)
Query: 26 KVGIFVTAVQPGS---PDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPG 82
+V +F VQP F + + P +F +E G L + + PG
Sbjct: 41 EVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEK--GTHLVDAGDIHYEPFGIYPG 98
Query: 83 SPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQR 142
+ SL + GDKI ND T EA LL LQD ++ +
Sbjct: 99 TKKSLDEISEGDKIAVPND------TTNEARALLL-LQDN-------------GIITLKD 138
Query: 143 GDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPA 193
G + VND + N ++E VE A QV R +G T + + L A
Sbjct: 139 GAGLNATVND--IEENPYNVEIVEL-EAAQVARVTGETAYVVLNGNYALEA 186
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
G G+ V V+ G+PA+ GL+ GD I+ N +K I VL
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVL 425
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 267 IDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNN 326
I++ ++ IR + R T ST LPG NN + PL + S + V P
Sbjct: 99 IETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEF 158
Query: 327 LLEDKS---------NLVPRAGRSRNPLLDVSLSQLDRPV 357
L E + ++ + LL+ +LD P+
Sbjct: 159 LRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPI 198
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 46 FVEPDPRFITFQK--EGSV---GIRLT--GGNKVGIFVTAVQPGSPASLQGLQPGDKILK 98
F+EP R ++ GSV G+ +T GG+ + V PG PA G + GD I+
Sbjct: 67 FLEPS-RLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVT 125
Query: 99 VNDMDMKGIT 108
V+ +KG++
Sbjct: 126 VDGTAVKGLS 135
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 129 NRRDEYEHVVASQRGDSFH----IKVNDRIMSANGLSLENVEYGTAVQVLRDSGST 180
N R +V QRG S H +KV I+ NGL+L E+ A +++ ++ T
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT 83
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVN 100
G+++ + V +V+PG A G++ GD+I+KVN
Sbjct: 27 GDRI-VLVQSVRPGGAAMKAGVKEGDRIIKVN 57
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 267 IDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNN 326
I++ ++ IR + R T ST LPG NN + PL + S + V P
Sbjct: 99 IETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEF 158
Query: 327 LLEDKS---------NLVPRAGRSRNPLLDVSLSQLDRPV 357
L E + ++ + LL+ +LD P+
Sbjct: 159 LRESTAIKDYDFPPXTVIGELDKQTGDLLEEIYRELDAPI 198
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Query: 63 GIRLTGGNKVGIFVTA----------VQPGSPASLQGL-QPGDKILKVNDMDMKGITREE 111
G++L GG IF T ++P SPA GL Q GD++L +N + + T EE
Sbjct: 30 GLQLQGG----IFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEE 85
Query: 112 A 112
A
Sbjct: 86 A 86
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 4/144 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
+K+ D I NG + +V T ++V + +T V + PE + V L K
Sbjct: 64 LKIFDHICDINGTPI-HVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK 122
Query: 208 RKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 267
K+ G+ L + + +L GD++ K N +G+ + L
Sbjct: 123 AGKE-LGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF 181
Query: 268 DSSKEKLSLTIRREVPRPTAYQES 291
+ K+S+ + R P+PT E+
Sbjct: 182 KGANGKVSMEVTR--PKPTLRTEA 203
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
G+ + V GSPA GL+PGD IL + + + + E V + Q Q L VQ RR
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQ--LAVQIRR 310
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
+L GD +L++NN P + +S + A ++ +++ LS+T+ R
Sbjct: 47 KLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 69 GNKVGIFVTAVQP------------GSPASLQGLQPGDKILKVNDMDMKGIT 108
G G+ VTAV P G +L GL PGD + D+ +KGIT
Sbjct: 231 GGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGIT 282
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 46 FVEPDPRFITFQK--EGSV---GIRLT--GGNKVGIFVTAVQPGSPASLQGLQPGDKILK 98
F+EP R ++ GSV G+ +T GG+ + V PG PA G + GD I+
Sbjct: 67 FLEPS-RLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVT 125
Query: 99 VNDMDMKG 106
V+ +KG
Sbjct: 126 VDGTAVKG 133
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 334 LVPRAGRSRNPLLDVSLSQLDRPVS 358
LVPR NP++ +LDRPVS
Sbjct: 14 LVPRGSHMTNPVIGTPWQKLDRPVS 38
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
+L + S+ + ++H F ++ +GVD +K +E ++ SSP W+
Sbjct: 151 QLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 334 LVPRAGRSRNPLLDVSLSQLDRPVS 358
LVPR NP++ +LDRPVS
Sbjct: 14 LVPRGSHMTNPVIGTPWQKLDRPVS 38
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 334 LVPRAGRSRNPLLDVSLSQLDRPVS 358
LVPR NP++ +LDRPVS
Sbjct: 14 LVPRGSHMTNPVIGTPWQKLDRPVS 38
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 334 LVPRAGRSRNPLLDVSLSQLDRPVS 358
LVPR NP++ +LDRPVS
Sbjct: 14 LVPRGSHMTNPVIGTPWQKLDRPVS 38
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 334 LVPRAGRSRNPLLDVSLSQLDRPVS 358
LVPR NP++ +LDRPVS
Sbjct: 14 LVPRGSHMTNPVIGTPWQKLDRPVS 38
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 56 FQKEGSVGIRLTGGNKVG--IFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEA 112
++KE G R+ GGN+ G I++ + P A G L+ GD+++ V+ + G + +
Sbjct: 9 WRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLV 68
Query: 113 VLFLLSLQDQIHL 125
V + Q H+
Sbjct: 69 VQLMQQAAKQGHV 81
>pdb|2D1V|A Chain A, Crystal Structure Of Dna-Binding Domain Of Bacillus
Subtilis Yycf
Length = 108
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
++ + L+ VW + + G + VDV R+ RE IE S P WI
Sbjct: 48 QVMTREHLLQTVWGYDYFGDV--RTVDVTVRRLREKIEDNPSHPNWI 92
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVND---------MDMKGITREEAVLFLLSLQDQI 123
GI V V P PA+ G+Q D I+ V++ MD R +V+ ++ ++D
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDK 304
Query: 124 HLIVQNRRDEY 134
L +Q EY
Sbjct: 305 QLTLQVTIQEY 315
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVND---------MDMKGITREEAVLFLLSLQDQI 123
GI V V P PA+ G+Q D I+ V++ MD R +V+ ++ ++D
Sbjct: 240 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDK 299
Query: 124 HLIVQNRRDEY 134
L +Q EY
Sbjct: 300 QLTLQVTIQEY 310
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 79 VQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD 121
VQP S AS GLQ GD+I+KV+ + + V F++ ++D
Sbjct: 10 VQPNSAASKAGLQAGDRIVKVDGQPLT-----QWVTFVMLVRD 47
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 79 VQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD 121
VQP S AS GLQ GD+I+KV+ + + V F++ ++D
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLT-----QWVTFVMLVRD 46
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 68 GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126
G K+GIFV V G A G +Q D +++V+ + G+T+ A L + + ++ +
Sbjct: 107 GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 166
Query: 127 V 127
+
Sbjct: 167 I 167
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 68 GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126
G K+GIFV V G A G +Q D +++V+ + G+T+ A L + + ++ +
Sbjct: 107 GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 166
Query: 127 V 127
+
Sbjct: 167 I 167
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 79 VQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD 121
VQP S AS GLQ GD+I+KV+ + + V F++ ++D
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLT-----QWVTFVMLVRD 46
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
++V DR++S NG+ + + AV +L + T+ L + R
Sbjct: 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,522,261
Number of Sequences: 62578
Number of extensions: 790659
Number of successful extensions: 2285
Number of sequences better than 100.0: 260
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1817
Number of HSP's gapped (non-prelim): 503
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)