Query psy9827
Match_columns 627
No_of_seqs 379 out of 3819
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 6.1E-68 1.3E-72 554.2 27.5 367 200-613 124-541 (542)
2 KOG3580|consensus 100.0 8.5E-54 1.8E-58 444.8 30.1 519 52-626 10-805 (1027)
3 KOG0708|consensus 100.0 6.1E-41 1.3E-45 340.3 17.7 333 249-611 2-359 (359)
4 COG0194 Gmk Guanylate kinase [ 99.9 1.1E-24 2.5E-29 203.3 13.2 146 453-602 3-184 (191)
5 PF00625 Guanylate_kin: Guanyl 99.9 2.7E-24 5.8E-29 208.0 9.7 146 453-601 1-183 (183)
6 smart00072 GuKc Guanylate kina 99.9 6.6E-23 1.4E-27 198.5 13.2 146 453-601 1-183 (184)
7 KOG3209|consensus 99.9 1.5E-21 3.2E-26 208.6 24.1 225 54-281 653-982 (984)
8 PRK14737 gmk guanylate kinase; 99.9 5.9E-22 1.3E-26 191.5 13.6 145 453-600 3-184 (186)
9 PLN02772 guanylate kinase 99.9 8.2E-22 1.8E-26 206.2 13.8 157 443-601 120-319 (398)
10 PRK10139 serine endoprotease; 99.8 3.8E-19 8.2E-24 194.3 18.7 223 7-283 198-448 (455)
11 KOG3209|consensus 99.8 5.6E-18 1.2E-22 181.5 24.5 227 54-283 348-737 (984)
12 PRK10942 serine endoprotease; 99.8 8.7E-19 1.9E-23 192.3 18.8 220 7-283 219-466 (473)
13 TIGR02037 degP_htrA_DO peripla 99.8 6E-19 1.3E-23 192.8 17.0 228 6-283 164-422 (428)
14 KOG0707|consensus 99.7 5.3E-17 1.2E-21 156.7 11.6 150 451-603 34-224 (231)
15 PRK14738 gmk guanylate kinase; 99.5 4.3E-14 9.3E-19 139.3 13.3 147 451-601 10-195 (206)
16 KOG3580|consensus 99.4 6.4E-13 1.4E-17 140.5 11.0 140 144-286 53-283 (1027)
17 TIGR03263 guanyl_kin guanylate 99.4 2.1E-12 4.7E-17 124.3 13.6 142 455-599 2-179 (180)
18 cd00071 GMPK Guanosine monopho 99.4 9.3E-13 2E-17 121.1 8.5 107 456-595 1-137 (137)
19 PRK10779 zinc metallopeptidase 99.4 6.8E-12 1.5E-16 137.9 14.8 150 73-283 127-280 (449)
20 PF00595 PDZ: PDZ domain (Also 99.3 1.2E-11 2.7E-16 102.8 9.9 75 54-128 2-81 (81)
21 KOG3605|consensus 99.3 1.2E-11 2.6E-16 132.6 9.7 158 52-280 647-813 (829)
22 PRK00300 gmk guanylate kinase; 99.3 5.9E-11 1.3E-15 116.8 13.2 145 453-601 4-185 (205)
23 KOG3812|consensus 99.2 5.4E-11 1.2E-15 118.7 12.3 258 313-601 58-354 (475)
24 TIGR00054 RIP metalloprotease 99.2 1.8E-10 3.9E-15 125.5 13.8 134 72-283 128-262 (420)
25 PF13180 PDZ_2: PDZ domain; PD 99.1 2E-10 4.3E-15 95.8 8.4 78 60-137 1-79 (82)
26 PRK10898 serine endoprotease; 99.1 6E-10 1.3E-14 118.5 10.9 128 10-138 187-345 (353)
27 KOG3550|consensus 99.1 3.8E-10 8.3E-15 100.3 7.6 83 50-132 90-176 (207)
28 TIGR02038 protease_degS peripl 99.0 1.2E-09 2.7E-14 116.1 11.3 129 9-138 186-344 (351)
29 cd00136 PDZ PDZ domain, also c 99.0 3.5E-09 7.5E-14 85.2 9.8 67 61-127 2-69 (70)
30 KOG3550|consensus 99.0 2.2E-09 4.8E-14 95.5 8.4 82 197-281 89-174 (207)
31 cd00992 PDZ_signaling PDZ doma 98.9 7.9E-09 1.7E-13 85.8 10.9 76 52-127 2-81 (82)
32 smart00228 PDZ Domain present 98.9 1.6E-08 3.5E-13 84.3 11.9 78 53-130 4-84 (85)
33 PF00595 PDZ: PDZ domain (Also 98.8 8.9E-09 1.9E-13 85.5 6.8 73 202-279 2-81 (81)
34 COG0265 DegQ Trypsin-like seri 98.8 1.5E-08 3.3E-13 108.0 8.5 131 8-139 181-337 (347)
35 cd00988 PDZ_CTP_protease PDZ d 98.8 7.9E-08 1.7E-12 80.4 10.8 70 60-130 2-72 (85)
36 KOG3553|consensus 98.7 1.2E-08 2.5E-13 84.6 5.0 58 61-118 36-105 (124)
37 KOG3551|consensus 98.7 2.7E-08 5.9E-13 101.4 7.6 82 52-133 86-172 (506)
38 KOG3549|consensus 98.7 5.3E-08 1.1E-12 97.9 7.8 81 49-129 53-138 (505)
39 COG0793 Prc Periplasmic protea 98.6 1E-07 2.2E-12 102.9 9.1 96 36-131 73-172 (406)
40 cd00991 PDZ_archaeal_metallopr 98.6 1.9E-07 4.1E-12 77.2 8.1 65 71-135 9-73 (79)
41 PRK10078 ribose 1,5-bisphospho 98.6 3.8E-07 8.3E-12 88.4 11.1 143 455-605 3-181 (186)
42 cd00987 PDZ_serine_protease PD 98.5 3.6E-07 7.7E-12 77.2 8.3 61 72-132 24-84 (90)
43 PLN00049 carboxyl-terminal pro 98.5 1.7E-07 3.7E-12 101.2 7.6 102 32-133 54-164 (389)
44 cd00990 PDZ_glycyl_aminopeptid 98.5 7.5E-07 1.6E-11 73.6 9.4 70 61-134 2-71 (80)
45 cd00989 PDZ_metalloprotease PD 98.4 1.1E-06 2.3E-11 72.3 8.8 70 61-133 2-72 (79)
46 KOG1892|consensus 98.4 4.4E-07 9.5E-12 101.4 7.9 83 49-131 932-1020(1629)
47 TIGR00225 prc C-terminal pepti 98.4 3.7E-07 8.1E-12 96.8 6.9 102 33-135 21-126 (334)
48 cd00986 PDZ_LON_protease PDZ d 98.3 1.9E-06 4.1E-11 71.1 8.0 65 72-137 8-72 (79)
49 cd00992 PDZ_signaling PDZ doma 98.3 4.6E-06 1E-10 69.0 10.3 73 202-278 4-81 (82)
50 TIGR02322 phosphon_PhnN phosph 98.3 5.5E-06 1.2E-10 79.6 11.6 140 455-600 2-178 (179)
51 PRK11186 carboxy-terminal prot 98.3 2E-06 4.4E-11 97.6 8.2 97 32-130 214-320 (667)
52 smart00228 PDZ Domain present 98.2 1.1E-05 2.4E-10 66.9 10.5 75 201-281 4-84 (85)
53 KOG3552|consensus 98.2 1.5E-06 3.2E-11 97.2 6.1 77 50-130 55-132 (1298)
54 KOG3571|consensus 98.2 4.4E-06 9.6E-11 88.3 8.3 79 52-130 251-339 (626)
55 cd00136 PDZ PDZ domain, also c 98.2 8.9E-06 1.9E-10 65.2 8.1 55 220-278 14-69 (70)
56 KOG3549|consensus 98.2 1.1E-05 2.4E-10 81.6 10.0 84 197-283 53-141 (505)
57 TIGR01713 typeII_sec_gspC gene 98.1 8.6E-06 1.9E-10 82.7 9.3 76 61-136 178-255 (259)
58 KOG3606|consensus 98.1 6.1E-06 1.3E-10 80.8 7.0 78 52-129 160-252 (358)
59 KOG3651|consensus 98.1 1E-05 2.2E-10 80.4 8.4 78 51-128 5-87 (429)
60 PF13180 PDZ_2: PDZ domain; PD 98.0 1.2E-05 2.6E-10 66.8 6.4 59 219-283 14-74 (82)
61 cd00991 PDZ_archaeal_metallopr 98.0 3.7E-05 8.1E-10 63.4 8.0 59 219-283 10-70 (79)
62 KOG3551|consensus 97.9 1.5E-05 3.2E-10 81.8 6.5 81 199-283 85-171 (506)
63 KOG1892|consensus 97.9 3.1E-05 6.8E-10 87.1 8.8 82 196-281 931-1019(1629)
64 KOG3606|consensus 97.9 2.8E-05 6.1E-10 76.2 7.2 84 199-285 159-257 (358)
65 TIGR02037 degP_htrA_DO peripla 97.8 4.9E-05 1.1E-09 83.5 9.1 73 61-133 339-423 (428)
66 KOG1320|consensus 97.8 3.6E-05 7.8E-10 83.1 7.7 125 10-135 293-461 (473)
67 TIGR03279 cyano_FeS_chp putati 97.8 0.00016 3.4E-09 77.6 11.7 49 76-128 2-50 (433)
68 cd00989 PDZ_metalloprotease PD 97.8 8.3E-05 1.8E-09 61.0 7.6 57 220-282 13-70 (79)
69 cd00988 PDZ_CTP_protease PDZ d 97.8 0.00011 2.4E-09 61.2 8.4 59 219-281 13-72 (85)
70 KOG3542|consensus 97.8 3.6E-05 7.7E-10 83.8 6.6 81 49-130 534-619 (1283)
71 KOG3553|consensus 97.8 3E-05 6.5E-10 64.6 4.3 58 219-281 59-116 (124)
72 PRK08356 hypothetical protein; 97.8 0.00012 2.6E-09 71.5 9.4 143 455-602 6-194 (195)
73 KOG1421|consensus 97.8 0.00038 8.3E-09 76.5 13.9 142 74-271 305-448 (955)
74 COG3709 Uncharacterized compon 97.7 0.00014 2.9E-09 67.1 8.6 144 453-601 4-183 (192)
75 KOG3552|consensus 97.7 6.1E-05 1.3E-09 84.8 6.7 77 199-281 56-132 (1298)
76 cd00987 PDZ_serine_protease PD 97.7 0.00014 3.1E-09 61.1 7.3 59 218-282 23-83 (90)
77 TIGR00054 RIP metalloprotease 97.7 0.0001 2.2E-09 80.5 8.1 66 72-138 203-268 (420)
78 KOG3571|consensus 97.7 0.00015 3.3E-09 77.0 8.8 86 197-285 248-343 (626)
79 cd00986 PDZ_LON_protease PDZ d 97.7 0.00023 4.9E-09 58.6 8.2 58 219-283 8-67 (79)
80 PRK10779 zinc metallopeptidase 97.6 0.00017 3.7E-09 79.6 8.2 65 73-138 222-286 (449)
81 cd00990 PDZ_glycyl_aminopeptid 97.5 0.00029 6.3E-09 57.9 6.5 57 219-282 12-68 (80)
82 PRK10139 serine endoprotease; 97.5 0.00027 5.8E-09 77.9 8.0 61 72-134 390-450 (455)
83 KOG4371|consensus 97.5 0.00048 1E-08 78.8 9.6 168 59-281 1157-1329(1332)
84 PRK04040 adenylate kinase; Pro 97.4 0.0021 4.5E-08 62.4 12.2 142 455-599 3-188 (188)
85 PRK10942 serine endoprotease; 97.4 0.00046 1E-08 76.5 8.1 60 72-133 408-467 (473)
86 PF14685 Tricorn_PDZ: Tricorn 97.3 0.0018 4E-08 54.3 8.9 71 60-132 1-81 (88)
87 TIGR02860 spore_IV_B stage IV 97.3 0.0013 2.8E-08 70.3 9.8 73 61-138 97-178 (402)
88 KOG0609|consensus 97.2 0.00091 2E-08 72.3 7.9 79 51-129 123-204 (542)
89 PF04495 GRASP55_65: GRASP55/6 97.2 0.0025 5.3E-08 58.4 9.3 71 60-131 26-102 (138)
90 KOG3651|consensus 97.1 0.0015 3.4E-08 65.2 8.3 76 201-280 7-88 (429)
91 KOG3129|consensus 97.1 0.002 4.4E-08 61.4 8.0 69 73-141 140-210 (231)
92 TIGR00225 prc C-terminal pepti 97.0 0.0018 3.9E-08 68.7 8.0 61 219-283 62-123 (334)
93 TIGR01713 typeII_sec_gspC gene 97.0 0.0016 3.6E-08 66.2 6.8 60 219-284 191-252 (259)
94 PLN00049 carboxyl-terminal pro 96.9 0.0026 5.6E-08 68.9 7.9 59 220-282 103-162 (389)
95 COG3975 Predicted protease wit 96.8 0.0017 3.7E-08 70.2 5.9 71 60-139 451-521 (558)
96 KOG1320|consensus 96.8 0.018 3.9E-07 62.7 13.3 58 219-282 398-457 (473)
97 TIGR02038 protease_degS peripl 96.8 0.0026 5.7E-08 67.9 7.0 65 213-283 272-338 (351)
98 COG0793 Prc Periplasmic protea 96.6 0.006 1.3E-07 66.2 8.2 59 219-281 112-171 (406)
99 PRK10898 serine endoprotease; 96.5 0.0069 1.5E-07 64.7 7.6 60 218-283 278-339 (353)
100 KOG3542|consensus 96.5 0.0032 6.9E-08 69.1 5.0 73 195-271 532-610 (1283)
101 KOG0606|consensus 96.4 0.0059 1.3E-07 71.3 7.1 75 54-128 630-714 (1205)
102 KOG3938|consensus 96.4 0.0053 1.2E-07 60.5 5.8 78 54-131 130-211 (334)
103 PRK11186 carboxy-terminal prot 96.4 0.0069 1.5E-07 69.4 7.6 60 219-281 255-320 (667)
104 KOG4407|consensus 96.4 0.0034 7.3E-08 73.4 4.6 134 45-282 41-202 (1973)
105 cd00227 CPT Chloramphenicol (C 96.4 0.008 1.7E-07 57.5 6.6 140 454-598 2-174 (175)
106 KOG3605|consensus 96.3 0.0032 6.9E-08 69.1 4.0 59 61-124 750-808 (829)
107 TIGR02860 spore_IV_B stage IV 96.3 0.012 2.5E-07 63.1 8.1 73 209-283 94-172 (402)
108 PF14685 Tricorn_PDZ: Tricorn 96.2 0.016 3.6E-07 48.6 6.7 63 219-283 12-81 (88)
109 KOG1421|consensus 96.2 0.056 1.2E-06 60.1 12.2 142 74-278 773-914 (955)
110 PRK09681 putative type II secr 96.1 0.024 5.1E-07 57.7 8.4 60 78-137 210-272 (276)
111 PRK09681 putative type II secr 95.9 0.0092 2E-07 60.7 4.8 58 225-285 210-269 (276)
112 PF07653 SH3_2: Variant SH3 do 95.8 0.0015 3.2E-08 49.8 -1.0 51 315-384 1-52 (55)
113 PF00018 SH3_1: SH3 domain; I 95.7 0.0034 7.4E-08 46.3 0.4 37 336-381 12-48 (48)
114 KOG3532|consensus 95.3 0.051 1.1E-06 60.2 8.0 67 61-129 387-453 (1051)
115 KOG4792|consensus 95.3 0.0084 1.8E-07 57.8 1.7 59 312-388 123-181 (293)
116 PF12812 PDZ_1: PDZ-like domai 95.0 0.14 3E-06 42.0 7.8 74 151-272 4-77 (78)
117 COG3480 SdrC Predicted secrete 95.0 0.063 1.4E-06 54.9 6.9 57 72-130 130-187 (342)
118 TIGR03279 cyano_FeS_chp putati 95.0 0.026 5.7E-07 60.9 4.5 52 223-282 2-54 (433)
119 KOG3834|consensus 94.8 0.26 5.7E-06 52.3 11.3 61 68-129 11-72 (462)
120 KOG3938|consensus 94.8 0.057 1.2E-06 53.5 5.9 80 200-282 128-211 (334)
121 COG3031 PulC Type II secretory 94.7 0.12 2.5E-06 50.8 7.8 59 225-286 210-270 (275)
122 PF14604 SH3_9: Variant SH3 do 93.9 0.021 4.7E-07 42.3 0.7 36 337-383 12-47 (49)
123 COG3031 PulC Type II secretory 93.7 0.14 3E-06 50.3 5.9 54 80-133 215-268 (275)
124 PRK00081 coaE dephospho-CoA ki 93.7 0.62 1.3E-05 45.3 10.7 86 509-600 95-193 (194)
125 KOG1738|consensus 93.7 0.097 2.1E-06 58.0 5.4 72 60-131 213-285 (638)
126 COG3480 SdrC Predicted secrete 92.7 0.39 8.4E-06 49.3 7.5 60 219-285 130-191 (342)
127 COG0265 DegQ Trypsin-like seri 92.5 0.31 6.7E-06 52.0 7.2 65 213-283 264-330 (347)
128 PTZ00451 dephospho-CoA kinase; 92.3 0.31 6.8E-06 49.2 6.4 85 518-608 118-216 (244)
129 PRK06762 hypothetical protein; 90.9 1.4 3.1E-05 41.3 9.1 133 454-598 2-162 (166)
130 PRK04182 cytidylate kinase; Pr 90.9 3.8 8.3E-05 38.6 12.1 89 510-602 67-175 (180)
131 PRK00091 miaA tRNA delta(2)-is 90.6 0.18 3.9E-06 52.7 2.8 72 454-525 4-101 (307)
132 PRK00698 tmk thymidylate kinas 90.4 1.6 3.4E-05 42.4 9.2 22 454-475 3-27 (205)
133 KOG2199|consensus 90.3 0.14 3E-06 53.7 1.6 54 313-385 215-268 (462)
134 KOG3532|consensus 90.2 0.68 1.5E-05 51.7 6.7 68 210-283 385-456 (1051)
135 cd00174 SH3 Src homology 3 dom 90.0 0.13 2.8E-06 38.0 0.8 37 337-383 15-51 (54)
136 smart00326 SH3 Src homology 3 89.7 0.25 5.5E-06 36.9 2.3 52 314-383 3-54 (58)
137 KOG3129|consensus 89.7 0.91 2E-05 43.8 6.4 60 221-284 141-202 (231)
138 TIGR02173 cyt_kin_arch cytidyl 89.7 4.9 0.00011 37.5 11.7 83 510-598 67-170 (171)
139 KOG3875|consensus 89.6 0.12 2.6E-06 52.4 0.5 58 313-383 268-326 (362)
140 KOG0606|consensus 89.5 1.1 2.4E-05 53.1 8.2 58 221-282 660-717 (1205)
141 KOG1118|consensus 88.8 0.24 5.1E-06 50.3 1.9 54 311-383 304-357 (366)
142 PRK14731 coaE dephospho-CoA ki 88.4 1.8 3.9E-05 42.6 7.9 60 541-601 137-203 (208)
143 PRK14732 coaE dephospho-CoA ki 85.9 1.7 3.7E-05 42.4 6.0 81 516-602 102-192 (196)
144 PHA02530 pseT polynucleotide k 85.8 3.6 7.8E-05 42.7 8.9 65 454-525 2-83 (300)
145 PRK05480 uridine/cytidine kina 85.8 7.6 0.00017 37.9 10.7 23 453-475 5-30 (209)
146 KOG4226|consensus 85.2 0.38 8.2E-06 47.9 1.1 59 311-385 188-247 (379)
147 PF12812 PDZ_1: PDZ-like domai 85.2 1.6 3.5E-05 35.8 4.6 40 72-111 30-69 (78)
148 PF04495 GRASP55_65: GRASP55/6 84.6 3.4 7.3E-05 37.9 6.9 56 220-281 44-101 (138)
149 COG3975 Predicted protease wit 84.3 2.6 5.5E-05 46.4 6.9 73 199-283 438-514 (558)
150 COG0750 Predicted membrane-ass 81.4 3.5 7.5E-05 44.3 6.8 55 75-129 132-188 (375)
151 KOG1029|consensus 81.2 0.83 1.8E-05 51.8 1.8 51 316-385 1056-1106(1118)
152 COG3172 NadR Predicted ATPase/ 80.6 12 0.00025 35.2 8.7 144 450-601 4-181 (187)
153 PLN02200 adenylate kinase fami 77.9 24 0.00053 35.3 11.1 37 439-475 27-67 (234)
154 PRK14530 adenylate kinase; Pro 77.9 41 0.00088 33.0 12.6 21 456-476 5-28 (215)
155 PLN02422 dephospho-CoA kinase 77.8 5.6 0.00012 39.8 6.4 84 518-607 108-201 (232)
156 PRK00131 aroK shikimate kinase 77.3 10 0.00022 35.3 7.9 30 572-601 141-172 (175)
157 PRK14734 coaE dephospho-CoA ki 76.4 10 0.00022 37.0 7.7 82 518-603 108-197 (200)
158 PF13671 AAA_33: AAA domain; P 74.3 5.4 0.00012 36.0 4.9 62 456-525 1-78 (143)
159 TIGR00174 miaA tRNA isopenteny 74.2 1.3 2.9E-05 45.7 0.9 64 456-525 1-96 (287)
160 KOG3601|consensus 74.0 2.8 6E-05 40.7 2.8 53 311-382 161-213 (222)
161 TIGR01360 aden_kin_iso1 adenyl 73.9 18 0.00039 34.2 8.7 21 455-475 4-27 (188)
162 KOG4407|consensus 72.9 1.8 3.9E-05 51.9 1.6 56 73-128 144-199 (1973)
163 cd01672 TMPK Thymidine monopho 69.8 15 0.00033 34.9 7.2 20 456-475 2-24 (200)
164 TIGR00235 udk uridine kinase. 69.7 34 0.00075 33.3 9.7 25 452-476 4-31 (207)
165 TIGR00152 dephospho-CoA kinase 68.6 9.6 0.00021 36.6 5.4 74 516-595 104-187 (188)
166 PRK13946 shikimate kinase; Pro 68.6 36 0.00078 32.5 9.4 139 453-603 9-179 (184)
167 KOG1738|consensus 68.0 4.7 0.0001 45.2 3.4 68 210-280 212-283 (638)
168 TIGR01313 therm_gnt_kin carboh 67.1 32 0.00068 31.9 8.5 20 457-476 1-23 (163)
169 TIGR03574 selen_PSTK L-seryl-t 66.7 8.1 0.00017 39.0 4.7 140 456-600 1-169 (249)
170 PF11874 DUF3394: Domain of un 66.7 8.8 0.00019 36.8 4.5 39 61-100 112-150 (183)
171 TIGR01359 UMP_CMP_kin_fam UMP- 64.6 63 0.0014 30.4 10.2 20 457-476 2-24 (183)
172 PRK12339 2-phosphoglycerate ki 64.5 24 0.00053 34.3 7.3 22 454-475 3-27 (197)
173 PRK14532 adenylate kinase; Pro 64.3 66 0.0014 30.6 10.3 20 457-476 3-25 (188)
174 TIGR01351 adk adenylate kinase 63.8 69 0.0015 31.2 10.6 19 457-475 2-23 (210)
175 KOG2921|consensus 62.1 15 0.00032 39.1 5.5 47 219-270 220-266 (484)
176 KOG4371|consensus 60.7 9.5 0.00021 45.2 4.1 70 60-129 1257-1328(1332)
177 PRK14531 adenylate kinase; Pro 60.6 62 0.0013 30.8 9.4 21 455-475 3-26 (183)
178 PLN02840 tRNA dimethylallyltra 60.4 3.8 8.1E-05 44.7 0.9 24 454-477 21-47 (421)
179 PRK08233 hypothetical protein; 59.4 91 0.002 29.1 10.3 22 455-476 4-28 (182)
180 PRK14730 coaE dephospho-CoA ki 58.5 26 0.00057 33.9 6.4 77 517-599 107-193 (195)
181 COG0563 Adk Adenylate kinase a 58.2 54 0.0012 31.3 8.4 141 457-598 3-177 (178)
182 cd02020 CMPK Cytidine monophos 57.7 74 0.0016 28.4 9.0 112 457-577 2-134 (147)
183 KOG3220|consensus 57.1 14 0.00029 36.1 3.9 84 517-606 107-200 (225)
184 COG3911 Predicted ATPase [Gene 56.4 54 0.0012 30.6 7.4 23 452-474 7-32 (183)
185 PRK06696 uridine kinase; Valid 56.1 40 0.00086 33.3 7.4 26 451-476 19-47 (223)
186 PRK00279 adk adenylate kinase; 54.9 1.1E+02 0.0023 29.9 10.2 20 457-476 3-25 (215)
187 KOG3834|consensus 54.2 48 0.001 35.8 7.7 72 62-135 94-172 (462)
188 PRK08099 bifunctional DNA-bind 53.3 2.6E+02 0.0056 30.5 13.6 143 451-601 216-393 (399)
189 PRK13808 adenylate kinase; Pro 53.0 1.5E+02 0.0033 31.4 11.3 19 457-475 3-24 (333)
190 PRK03839 putative kinase; Prov 51.7 2.1E+02 0.0045 26.8 12.8 20 456-475 2-24 (180)
191 PRK05057 aroK shikimate kinase 51.1 1.5E+02 0.0033 27.9 10.2 30 571-600 140-171 (172)
192 PRK13975 thymidylate kinase; P 49.9 1.7E+02 0.0036 27.8 10.5 24 455-478 3-29 (196)
193 COG1102 Cmk Cytidylate kinase 48.1 1.5E+02 0.0033 28.1 9.1 136 456-603 2-175 (179)
194 KOG2921|consensus 46.4 17 0.00036 38.7 2.9 39 71-109 219-258 (484)
195 PRK05541 adenylylsulfate kinas 45.6 57 0.0012 30.6 6.4 24 453-476 6-32 (176)
196 PRK08154 anaerobic benzoate ca 45.1 1.2E+02 0.0026 31.7 9.2 134 451-601 130-302 (309)
197 KOG3632|consensus 45.0 12 0.00026 44.1 1.7 57 318-387 1143-1202(1335)
198 TIGR00041 DTMP_kinase thymidyl 42.1 1.8E+02 0.0039 27.5 9.4 23 454-476 3-28 (195)
199 COG2082 CobH Precorrin isomera 39.8 1.4E+02 0.0029 29.5 7.8 91 509-607 61-157 (210)
200 COG5008 PilU Tfp pilus assembl 39.7 73 0.0016 32.6 6.1 131 438-609 105-259 (375)
201 cd02023 UMPK Uridine monophosp 38.8 2.2E+02 0.0048 27.1 9.5 19 457-475 2-23 (198)
202 PRK13947 shikimate kinase; Pro 37.7 3.3E+02 0.0071 25.1 11.0 21 456-476 3-26 (171)
203 COG1936 Predicted nucleotide k 37.1 3.8E+02 0.0083 25.7 10.9 17 584-600 140-156 (180)
204 KOG2070|consensus 36.3 23 0.0005 38.7 2.1 57 312-387 16-72 (661)
205 COG0750 Predicted membrane-ass 35.4 57 0.0012 34.9 5.2 46 233-280 139-188 (375)
206 PRK05800 cobU adenosylcobinami 33.3 1.1E+02 0.0025 28.8 6.2 43 456-499 3-48 (170)
207 PF07728 AAA_5: AAA domain (dy 32.8 14 0.0003 33.3 -0.2 23 456-478 1-26 (139)
208 PRK14021 bifunctional shikimat 32.0 2.6E+02 0.0056 31.8 9.9 133 451-600 3-176 (542)
209 PRK04220 2-phosphoglycerate ki 31.3 2.7E+02 0.0059 29.1 9.0 20 581-600 271-290 (301)
210 COG4639 Predicted kinase [Gene 30.8 96 0.0021 29.1 4.9 62 454-525 2-77 (168)
211 PRK14729 miaA tRNA delta(2)-is 30.2 42 0.00091 35.0 2.9 23 454-476 4-29 (300)
212 PF07931 CPT: Chloramphenicol 29.9 1.1E+02 0.0024 29.2 5.4 63 455-523 2-89 (174)
213 PRK13948 shikimate kinase; Pro 29.8 4.4E+02 0.0095 25.2 9.7 23 453-475 9-34 (182)
214 PRK14733 coaE dephospho-CoA ki 29.0 98 0.0021 30.3 5.1 81 517-601 108-199 (204)
215 COG0703 AroK Shikimate kinase 28.9 3.3E+02 0.0071 26.0 8.3 21 454-474 2-25 (172)
216 KOG4225|consensus 28.6 35 0.00075 36.9 1.9 50 316-384 233-282 (489)
217 PRK14526 adenylate kinase; Pro 28.2 5.8E+02 0.012 25.0 12.7 20 457-476 3-25 (211)
218 PLN02459 probable adenylate ki 27.5 6.8E+02 0.015 25.6 11.5 20 457-476 32-54 (261)
219 PRK08118 topology modulation p 27.4 1.9E+02 0.0041 27.1 6.7 19 457-475 4-25 (167)
220 KOG0792|consensus 26.5 27 0.00058 41.8 0.7 62 59-120 715-798 (1144)
221 PF08433 KTI12: Chromatin asso 26.2 58 0.0013 33.4 3.1 136 456-598 3-169 (270)
222 PRK01184 hypothetical protein; 26.0 1.9E+02 0.0041 27.2 6.5 26 576-601 153-179 (184)
223 PLN02748 tRNA dimethylallyltra 24.7 69 0.0015 35.6 3.5 25 452-476 20-47 (468)
224 PRK00098 GTPase RsgA; Reviewed 23.9 1.6E+02 0.0035 30.5 5.9 23 454-476 164-189 (298)
225 KOG0197|consensus 22.1 33 0.00071 37.9 0.3 43 336-387 26-69 (468)
226 PLN02165 adenylate isopentenyl 21.9 58 0.0013 34.5 2.1 26 451-476 40-68 (334)
227 KOG0162|consensus 21.6 61 0.0013 37.3 2.3 37 336-383 1066-1102(1106)
228 KOG2856|consensus 21.5 55 0.0012 34.6 1.7 54 314-384 415-468 (472)
229 PRK02496 adk adenylate kinase; 21.3 6.7E+02 0.015 23.4 11.2 19 457-475 4-25 (184)
230 KOG0515|consensus 20.8 46 0.001 36.8 1.1 39 337-383 699-737 (752)
No 1
>KOG0609|consensus
Probab=100.00 E-value=6.1e-68 Score=554.23 Aligned_cols=367 Identities=21% Similarity=0.288 Sum_probs=306.8
Q ss_pred EEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEE
Q psy9827 200 LRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS 275 (627)
Q Consensus 200 ~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~ 275 (627)
..|.+.|. .+..+|+++. ..++|.+|.+| |.+.+.+.|++||.|++|||+++.+.+.+++..+|+.+.+.++
T Consensus 124 riv~i~k~-~~eplG~Tik~~e~~~~~vARI~~G---G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 124 RIVRIVKN-TGEPLGATIRVEEDTKVVVARIMHG---GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT 199 (542)
T ss_pred EEEEEeec-CCCccceEEEeccCCccEEeeeccC---CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence 34555553 3566777664 26999999999 7899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcCCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCC
Q psy9827 276 LTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQL 353 (627)
Q Consensus 276 l~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~ 353 (627)
++|.+..++.+ ..+.+||||+||| +|.+|+.+||++||++ +|||||| ++++
T Consensus 200 fkiiP~~~~~~-----------------------~~~~~~vra~FdY---dP~~D~~IPCkEagl~F~~GDILqI-v~qd 252 (542)
T KOG0609|consen 200 FKIIPSYRPPP-----------------------QQQVVFVRALFDY---DPKEDDLIPCKEAGLPFQRGDILQI-VSQD 252 (542)
T ss_pred EEEcccccCCC-----------------------ceeeeeehhhcCc---CcccCCcccchhcCCcccccceeee-ccCC
Confidence 99988665111 1135899999999 8889999999999998 9999999 9999
Q ss_pred CCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccCccCCCCCCccCcccccc
Q psy9827 354 DRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVF 433 (627)
Q Consensus 354 d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~ 433 (627)
|. +||||+++++. ....+|||||+.++||+..+...... .......+++..||+++++++++.+.+- ++
T Consensus 253 D~----nWWQA~~~~~~-~~~~AGLiPS~~~qerr~a~~~~~~~---~~~~~~~c~~l~kkkk~~~~~y~~~~~~---~~ 321 (542)
T KOG0609|consen 253 DP----NWWQARRVGDP-FGGLAGLIPSKELQERRVACLRREVS---KEPEKTRCQRLSKKKKKKKSKYLGKHSA---VF 321 (542)
T ss_pred Cc----chhhhhcccCc-cccccccccCHHHHHHHHHHHhhhcc---cCCcCchhcccchhhhhhhhhhhhhcch---hh
Confidence 97 99999999864 34799999999999998654332111 1112234444444444444555543221 01
Q ss_pred cCCCCCccccchhhccCCCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHH
Q psy9827 434 GDSISKFPAYERVSLRHPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKD 495 (627)
Q Consensus 434 ~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~ 495 (627)
...++++||+|+++++..+|+|||+||. .+.|+++|+..+|+.|++++|+ ||||+++|++
T Consensus 322 --d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~ 399 (542)
T KOG0609|consen 322 --DQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEA 399 (542)
T ss_pred --hccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhh
Confidence 1256789999999999889999999999 9999999999999999997775 7999999999
Q ss_pred HHh------cccccCCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC----------
Q psy9827 496 TAM------YQSSKEPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG---------- 552 (627)
Q Consensus 496 ~i~------~~~~~~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~---------- 552 (627)
+|. ||++ ++|+| +|+.++++||.||||+. ++| ++|+++|.|| ||||+||+++.+
T Consensus 400 dI~~~~~lE~GEy-~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~Py--VIFI~pP~~~~~r~~r~~~~~~ 476 (542)
T KOG0609|consen 400 DIRAGKFLEYGEY-EGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPY--VIFIAPPSLEELRALRKVAVMS 476 (542)
T ss_pred hhhcCCceecCcc-hhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccce--EEEecCCCchhHHHHhhhcccc
Confidence 975 4554 79999 99999999999999999 999 9999999999 999999997644
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCCCC
Q psy9827 553 ----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKS 613 (627)
Q Consensus 553 ----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~~ 613 (627)
+..+++++++|.+.+++||+.|+||||.+|+|+|+|+||++|+.+|++++++|||||++|.
T Consensus 477 ~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvsWv 541 (542)
T KOG0609|consen 477 TIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVSWV 541 (542)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeeecc
Confidence 3467888999999999999999999999999999999999999999999999999999995
No 2
>KOG3580|consensus
Probab=100.00 E-value=8.5e-54 Score=444.84 Aligned_cols=519 Identities=30% Similarity=0.437 Sum_probs=385.2
Q ss_pred eEEEeccCC--ceeEEEEccCC--------CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy9827 52 RFITFQKEG--SVGIRLTGGNK--------VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQ 120 (627)
Q Consensus 52 r~v~l~k~g--~lG~~i~g~~~--------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g 120 (627)
.+++|.|.. ||||.|.||.+ ..++|+.|.||+||+ | |+.||+|+.|||+++.+..|.-|+..|+.++
T Consensus 10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksg 87 (1027)
T KOG3580|consen 10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG 87 (1027)
T ss_pred heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence 467888864 89999999853 358999999999997 6 9999999999999999999999999999999
Q ss_pred CeeEEEEEeCCcccc----------------------------------------------------e------------
Q psy9827 121 DQIHLIVQNRRDEYE----------------------------------------------------H------------ 136 (627)
Q Consensus 121 ~~V~L~v~r~~~~~~----------------------------------------------------~------------ 136 (627)
....++|.|.+...- .
T Consensus 88 K~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer 167 (1027)
T KOG3580|consen 88 KVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRER 167 (1027)
T ss_pred cceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccccc
Confidence 999999886421100 0
Q ss_pred ------------------------------------eee-----------------------cCCCCccccccCCeeecc
Q psy9827 137 ------------------------------------VVA-----------------------SQRGDSFHIKVNDRIMSA 157 (627)
Q Consensus 137 ------------------------------------~v~-----------------------~~~~~~~~l~~~D~i~~v 157 (627)
.++ +-++.++.|+.||.|+.+
T Consensus 168 ~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkI 247 (1027)
T KOG3580|consen 168 DLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKI 247 (1027)
T ss_pred ccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEE
Confidence 000 001123478899999999
Q ss_pred CCeecCcCChHHHHHHHhhcCCeEEEEEeecc------------------------------------------------
Q psy9827 158 NGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI------------------------------------------------ 189 (627)
Q Consensus 158 ng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~------------------------------------------------ 189 (627)
||...++++...+..++..+...+.|+|.|..
T Consensus 248 NGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~ 327 (1027)
T KOG3580|consen 248 NGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSS 327 (1027)
T ss_pred CcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCc
Confidence 99999999999999999998888888887650
Q ss_pred --cC---CC--------------------------------------------CCC----------------------Cc
Q psy9827 190 --VL---PA--------------------------------------------SPE----------------------PQ 198 (627)
Q Consensus 190 --~~---p~--------------------------------------------~~~----------------------~~ 198 (627)
.. |. .+. |.
T Consensus 328 s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~ 407 (1027)
T KOG3580|consen 328 SEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPN 407 (1027)
T ss_pred hhcCCCCCCccccchhhcccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCC
Confidence 00 00 000 00
Q ss_pred cEEEEEeecCCCCCeeeee--CC--cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CC
Q psy9827 199 TLRVQLSKSRKKDDFGIIL--GN--KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KE 272 (627)
Q Consensus 199 ~~~V~L~k~~~~~~~gi~~--~~--gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~ 272 (627)
..-|.+.| +...|+.+ |+ ||||..|..| ++|...||+.||.||.||.+++.++..+|++..|-.. +.
T Consensus 408 tk~VrF~K---GdSvGLRLAGGNDVGIFVaGvqeg----spA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGE 480 (1027)
T KOG3580|consen 408 TKMVRFKK---GDSVGLRLAGGNDVGIFVAGVQEG----SPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGE 480 (1027)
T ss_pred ceeEEeec---CCeeeeEeccCCceeEEEeecccC----CchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCc
Confidence 11233333 34445444 43 8999999876 5666789999999999999999999999999998874 45
Q ss_pred eEEEEEEeCCCCCCCcCCCCccccCcCCcCCCCCCCCCCCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccC
Q psy9827 273 KLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQ 352 (627)
Q Consensus 273 ~v~l~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~ 352 (627)
.++|..++..+-.. .+=.+.-.++||+|.+|.|-+ .+...++|++|++.+| +..
T Consensus 481 evtilaQ~k~Dvyr-----------------~iv~s~vGDSFyIRtHFE~Ek--------e~P~gL~FtrGeVFrv-vDT 534 (1027)
T KOG3580|consen 481 EVTILAQSKADVYR-----------------DIVASGVGDSFYIRTHFECEK--------ETPQGLAFTRGEVFRV-VDT 534 (1027)
T ss_pred EEeehhhhhhHHHH-----------------HHHhccCCceeEEeeeeeecC--------CCCccccccccceeee-eec
Confidence 77776655332111 000111247899999998822 2334567889999998 433
Q ss_pred CCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccccccccchhccccCccCCCCCCccCccccc
Q psy9827 353 LDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVV 432 (627)
Q Consensus 353 ~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~ 432 (627)
.-.+ .---|-|-++|.+-.+.+.|+||+|.|+||++.++... ...+.+.|..|||-|..+...++.+-+ ..+|+.
T Consensus 535 Ly~G-klG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aq---r~~agGdRAdFWR~RGlRsg~Kknlrk-SREDLs 609 (1027)
T KOG3580|consen 535 LYDG-KLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQ---RDNAGGDRADFWRMRGLRSGVKKNLRK-SREDLS 609 (1027)
T ss_pred ccCC-CCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhc---cccccchHHHHHHHhhhhhhhhhhhhh-hhhhhh
Confidence 2211 22357788898887789999999999999998876521 123445788999887533211111111 122322
Q ss_pred ccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee---h
Q psy9827 433 FGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY---Q 509 (627)
Q Consensus 433 ~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y---~ 509 (627)
+......+|+||+|++.+.+|.|||||+||.++..+++|..+.|+.|..+..+. -..|......+. +
T Consensus 610 A~~vqtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAktep----------rdag~~~stg~irL~T 679 (1027)
T KOG3580|consen 610 AVVVQTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEP----------RDAGSEKSTGVIRLNT 679 (1027)
T ss_pred hceecccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhcccc----------ccCCcccccceEEehh
Confidence 111235789999999999999999999999999999999999999999754331 001222122333 9
Q ss_pred HHhHHhCCCcEEEecC----Cce-eccccCCCCceeEEEEcCCC------cccC--CCCCHHHHHHHHHHHHHHHHHhcC
Q psy9827 510 GKDSMYQGKDSMYQGK----ESM-YQGKDSMYQGKDSMYQGKDS------MYQG--KDIKKEVKIKLFEQSQKLEKVWSH 576 (627)
Q Consensus 510 V~~v~~~gk~ciLdi~----~~l-~~~~~~~~P~~~vIFI~pps------l~~~--~~~~e~~~~~~~~~~~~~e~~~~~ 576 (627)
|+.|+++.||+||||. .+| +. ++||| |||+.|.| |+++ ..+..+ .+++++++.|+.+.+.|
T Consensus 680 vrqiieqDKHALLDVTP~AvdrLNY~---QwypI--Vvff~PdSrqgvktmRqrL~P~Sr~S-sRkLy~~a~KL~K~~~H 753 (1027)
T KOG3580|consen 680 VRQIIEQDKHALLDVTPKAVDRLNYT---QWYPI--VVFFNPDSRQGVKTMRQRLAPTSRKS-SRKLYDQANKLKKTCAH 753 (1027)
T ss_pred hHHHHhcccchhhccCHHHHhhhccc---eeeeE--EEEeCCcchHHHHHHHHHhCcccchh-HHHHHHHHHHHhhhchh
Confidence 9999999999999999 677 77 99999 99999999 4554 445566 89999999999999999
Q ss_pred cccEEEE-CCCHHHHHHHHHHHHHhhCCCCeeEeCCCCccCccc-ccccccc
Q psy9827 577 VFTGTIT-LSGVDVWYRKTRELIEKQQSSPVWISETKSNLDIRE-LDIRESW 626 (627)
Q Consensus 577 ~fd~vi~-n~~l~~~~~~l~~~i~~~~~~~~Wvp~~~~~~~~~~-~~~~~~~ 626 (627)
+|+++|. |..-|.||..|+++|.++|++++||.+.+++.+++| .|.|-++
T Consensus 754 LFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEgk~dG~~~Dn~ddr~sy 805 (1027)
T KOG3580|consen 754 LFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEGKMDGMDDDNPDDRMSY 805 (1027)
T ss_pred heEeeeccCCCChhHHHHHHHHHHHhcCceeEeecccccCcccCCccccccc
Confidence 9999997 556799999999999999999999999999999988 8887665
No 3
>KOG0708|consensus
Probab=100.00 E-value=6.1e-41 Score=340.28 Aligned_cols=333 Identities=19% Similarity=0.270 Sum_probs=247.0
Q ss_pred EeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCCCcCCCCccccCcC--CcCCC-CCCCCCCCceeeCCCCCCCCC
Q psy9827 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKEN--NYMDP-LSTNYSSQNLYVQPPTRGGPN 325 (627)
Q Consensus 249 ~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~yvra~~~y~~~ 325 (627)
.+||.+..+.+++++...++.+++.+++++...... |..........+ .+++. .++......+||++.|+|
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~---~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~--- 75 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEE---YDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDY--- 75 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhh---hchhhcccCCcchHHHHHhhhccCCCCceeEeeccccc---
Confidence 578899999999999999999999999999875432 221111111111 11111 111112457999999999
Q ss_pred CCccCcCCCCCCCC--CCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHHHhhcccccccccc
Q psy9827 326 NLLEDKSNLVPRAG--RSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSAS 403 (627)
Q Consensus 326 ~~~~d~~~~~~~~g--l~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~ 403 (627)
++..+ ++.+..+ +..|+|+|+ .+..|. .||+++++...+.+...|+||++.+.+++..++++
T Consensus 76 d~~~~--~~~~~~~~~~~~~~i~~~-~~~~~~----e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k--------- 139 (359)
T KOG0708|consen 76 DLDRG--SPGYSRAQSFLYGQILHL-ISRSDD----EWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLK--------- 139 (359)
T ss_pred cccCC--CCCcchhhhhhhhhhhhc-cccccH----HHHHhhccCCCcccccccccccccccccccccccc---------
Confidence 77666 3444444 459999999 444444 79999999888888899999999888876543321
Q ss_pred cccccchhccccCccCCCCCCccCcc---cccccCCCCCccccchhhccCCCCCceEEEeCccHHHHHHHHhhhCCCCcc
Q psy9827 404 ESRGSFFKRRRNSHRRSKSLSKDHWD---DVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS 480 (627)
Q Consensus 404 ~~~~~f~~~r~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~k~~l~~~Ll~~~p~~f~ 480 (627)
+.+|.-+|+ ....+++++.+ +.........+.+||.|.++.+.+.|||+|+||.++.|.++|+.++|++|.
T Consensus 140 --~~~f~~~~~----~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~ 213 (359)
T KOG0708|consen 140 --RDSFNSGRD----FPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFK 213 (359)
T ss_pred --cccccccCC----cccccCcccccccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhcccc
Confidence 122222111 11122333331 111112234578999999999999999999999999999999999999999
Q ss_pred cCCCCCC-CCHHHHHHHHhcccc-----cCCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCC
Q psy9827 481 APRKFNF-ILWATIKDTAMYQSS-----KEPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKD 547 (627)
Q Consensus 481 ~~~~~~F-vs~e~f~~~i~~~~~-----~~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pp 547 (627)
+|+++.- .++++|+..++.+.| +.+++| +|++++++|+||||||+ .+. .++..+|||| +|||+|.
T Consensus 214 ~C~~~t~~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPI--vIfIr~k 291 (359)
T KOG0708|consen 214 SCLPETLRPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPI--VIFIRVK 291 (359)
T ss_pred ccchhhhcccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceece--EEEEEec
Confidence 9999852 247899998765433 257888 99999999999999999 333 2222499999 9999999
Q ss_pred CcccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEeCC
Q psy9827 548 SMYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISET 611 (627)
Q Consensus 548 sl~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp~~ 611 (627)
|.+++ .+.+.++++++++++.++|++|..+|+.+|.-++++++|.+++.+|.++|.+++|||+.
T Consensus 292 s~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~ 359 (359)
T KOG0708|consen 292 SKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK 359 (359)
T ss_pred hHHHHHHHhcccchHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence 96544 44556669999999999999999999999999999999999999999999999999974
No 4
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=203.26 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=120.6
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCccc------CCCC-------CCCCHHHHHHHHhccccc-----CCcee---
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA------PRKF-------NFILWATIKDTAMYQSSK-----EPGMY--- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y--- 508 (627)
..+++||+||| |+||.++|++++.-.|+. |||+ ||||+++|+++|+.++++ .||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence 46899999999 999999999998223332 4443 799999999999877654 49999
Q ss_pred --hHHhHHhCCCcEEEecC--Cce-eccccCCCCceeEEEEcCCCcccC-----CCC--CHHHHHHHHHHHHHHHHHhcC
Q psy9827 509 --QGKDSMYQGKDSMYQGK--ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDI--KKEVKIKLFEQSQKLEKVWSH 576 (627)
Q Consensus 509 --~V~~v~~~gk~ciLdi~--~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~--~e~~~~~~~~~~~~~e~~~~~ 576 (627)
.|+.++++|++|||||| +++ ++ +.+|-++.|||.|||++++ +|. +++..+++++++. .|..+..
T Consensus 83 ~~~ve~~~~~G~~vildId~qGa~qvk---~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~-~Ei~~~~ 158 (191)
T COG0194 83 REPVEQALAEGKDVILDIDVQGALQVK---KKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAK-KEISHAD 158 (191)
T ss_pred HHHHHHHHhcCCeEEEEEehHHHHHHH---HhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999 777 66 7788667999999997765 444 4555777777774 4777888
Q ss_pred cccEEEECCCHHHHHHHHHHHHHhhC
Q psy9827 577 VFTGTITLSGVDVWYRKTRELIEKQQ 602 (627)
Q Consensus 577 ~fd~vi~n~~l~~~~~~l~~~i~~~~ 602 (627)
.|||||+|||+++|+.+|+.+|..+.
T Consensus 159 ~fdyvivNdd~e~a~~~l~~ii~aer 184 (191)
T COG0194 159 EFDYVIVNDDLEKALEELKSIILAER 184 (191)
T ss_pred hCCEEEECccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998774
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.90 E-value=2.7e-24 Score=208.01 Aligned_cols=146 Identities=20% Similarity=0.272 Sum_probs=120.9
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CCC-------CCCCHHHHHHHHhcccc-----cCCcee-
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RKF-------NFILWATIKDTAMYQSS-----KEPGMY- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~~-------~Fvs~e~f~~~i~~~~~-----~~~~~Y- 508 (627)
.+|||||+||+ |++|.++|++++|+.|..+ ++. ||||+++|+++++.|+| +.|++|
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 36999999999 9999999999999999762 221 79999999999876554 368899
Q ss_pred ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CCCCHHHHHHHHHHHHHHHHHhcCc
Q psy9827 509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KDIKKEVKIKLFEQSQKLEKVWSHV 577 (627)
Q Consensus 509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e~~~~~~~~~~~~~e~~~~~~ 577 (627)
+|+.++++|||||||++ ..+ .++...++|+ +|||+|||.+.+ ++..++ .+++.+++.++|.++.++
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~--~IfI~~~s~~~l~~~l~~r~~~~-~~~i~~r~~~~~~~~~~~ 157 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPI--VIFIKPPSPEVLKRRLRRRGDES-EEEIEERLERAEKEFEHY 157 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEE--EEEEEESSHHHHHHHHHTTTHCH-HHHHHHHHHHHHHHHGGG
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCce--EEEEEccchHHHHHHHhcccccc-HHHHHHHHHHHHHHHhHh
Confidence 89999999999999999 555 4455589999 999999995544 444333 677888888889999998
Q ss_pred --ccEEEECCCHHHHHHHHHHHHHhh
Q psy9827 578 --FTGTITLSGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 578 --fd~vi~n~~l~~~~~~l~~~i~~~ 601 (627)
||+||+|+++++|+.+|+++|+++
T Consensus 158 ~~fd~vi~n~~le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 158 NEFDYVIVNDDLEEAVKELKEIIEQE 183 (183)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 6
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.89 E-value=6.6e-23 Score=198.45 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=121.0
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCC---------------CCCCCHHHHHHHHhccccc-----CCcee-
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRK---------------FNFILWATIKDTAMYQSSK-----EPGMY- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~---------------~~Fvs~e~f~~~i~~~~~~-----~~~~Y- 508 (627)
+.|||||+||+ |++|.++|++++|+.|..+++ ++|+|+++|+++++.|++. .||+|
T Consensus 1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 36899999999 999999999999988877432 1799999999999877643 58899
Q ss_pred ----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827 509 ----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS 575 (627)
Q Consensus 509 ----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~ 575 (627)
+|++++++|++||||++ +.+ .++...++|+ +|||.|||.+.+ +| .++++++++++++.+++..+
T Consensus 81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~--vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~- 157 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPI--VIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY- 157 (184)
T ss_pred cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcE--EEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-
Confidence 79999999999999999 555 4444477889 999999995543 33 34566888888887766655
Q ss_pred CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827 576 HVFTGTITLSGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 576 ~~fd~vi~n~~l~~~~~~l~~~i~~~ 601 (627)
++||++|+|+|+++|+++|+++|.++
T Consensus 158 ~~fd~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 158 HLFDYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999875
No 7
>KOG3209|consensus
Probab=99.89 E-value=1.5e-21 Score=208.56 Aligned_cols=225 Identities=26% Similarity=0.451 Sum_probs=181.5
Q ss_pred EEecc-CCceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeeEEEE
Q psy9827 54 ITFQK-EGSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQIHLIV 127 (627)
Q Consensus 54 v~l~k-~g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V~L~v 127 (627)
|.|.+ ..||||.|-||++ ..|+|..|.+.++|++.| |+.||.|+.|+|++|.+.+|.+++.++. +....|.|+|
T Consensus 653 V~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtV 732 (984)
T KOG3209|consen 653 VFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTV 732 (984)
T ss_pred EEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEE
Confidence 44544 4699999999875 569999999999999999 9999999999999999999999998876 4467899999
Q ss_pred EeCC----------------------------cccceee---------------ecCCCC-ccccccCCeeeccCCeecC
Q psy9827 128 QNRR----------------------------DEYEHVV---------------ASQRGD-SFHIKVNDRIMSANGLSLE 163 (627)
Q Consensus 128 ~r~~----------------------------~~~~~~v---------------~~~~~~-~~~l~~~D~i~~vng~~l~ 163 (627)
+|.- +.+..++ .+.+++ =+.|++||+|++|||.++.
T Consensus 733 RRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~ 812 (984)
T KOG3209|consen 733 RRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSIL 812 (984)
T ss_pred eeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeee
Confidence 8731 0111111 111111 2588999999999999999
Q ss_pred cCChHHHHHHHhhcCCeEEEEEeecccC---------------------------CC-----------------------
Q psy9827 164 NVEYGTAVQVLRDSGSTVTLKVRRRIVL---------------------------PA----------------------- 193 (627)
Q Consensus 164 ~~~~~~~~~~l~~sg~~v~l~v~r~~~~---------------------------p~----------------------- 193 (627)
+++|...+++++++|.+|+|.+..+... |.
T Consensus 813 ~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r 892 (984)
T KOG3209|consen 813 NLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDR 892 (984)
T ss_pred ccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceecccc
Confidence 9999999999999999999998654100 00
Q ss_pred -CCCCccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827 194 -SPEPQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 268 (627)
Q Consensus 194 -~~~~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~ 268 (627)
+.....++|+|.++..+.||+|++| -++||-++... |.|-++|.+++||+|++|||.+..+|+|..|+.+|+
T Consensus 893 ~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeD---GPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk 969 (984)
T KOG3209|consen 893 MSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAED---GPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK 969 (984)
T ss_pred ccccCCeeEEEeeccccccceEeecccccccceEEEEeccC---CCccccCceeecceEEEecCcccCCCcHHHHHHHHH
Confidence 0011246899999988888888887 38999999866 678889999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeC
Q psy9827 269 SSKEKLSLTIRRE 281 (627)
Q Consensus 269 ~~~~~v~l~V~r~ 281 (627)
+.+..+.|.+.|+
T Consensus 970 ~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 970 QGGRRVLLLLRRG 982 (984)
T ss_pred hCCeEEEEEeccC
Confidence 9888887777664
No 8
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.87 E-value=5.9e-22 Score=191.45 Aligned_cols=145 Identities=13% Similarity=0.090 Sum_probs=117.2
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCCC-------CCCCHHHHHHHHhccccc-----CCcee--
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRKF-------NFILWATIKDTAMYQSSK-----EPGMY-- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~~-------~Fvs~e~f~~~i~~~~~~-----~~~~Y-- 508 (627)
..++|||+||+ |++|+++|++.+|+.+.+ |+++ ||||+++|+.+++.|+|. .||+|
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 46899999999 999999999999987554 2222 799999999998776643 59999
Q ss_pred ---hHHhHHhCCCcEEEecC-Cce-eccccCCCCce-eEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827 509 ---QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGK-DSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS 575 (627)
Q Consensus 509 ---~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~-~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~ 575 (627)
+|++++++||+||||++ +.+ .++ ..+|-. ++|||.|||++.+ +| .++++++++++++ ..|.++.
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~--~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~-~~e~~~~ 159 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQGAKIIK--EKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENG-IIELDEA 159 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHHHHHHH--HhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhh
Confidence 79999999999999999 555 333 456621 2999999995433 33 3566688888875 4788899
Q ss_pred CcccEEEECCCHHHHHHHHHHHHHh
Q psy9827 576 HVFTGTITLSGVDVWYRKTRELIEK 600 (627)
Q Consensus 576 ~~fd~vi~n~~l~~~~~~l~~~i~~ 600 (627)
++||+||+|+|+++++.+|+++|..
T Consensus 160 ~~~D~vI~N~dle~a~~ql~~ii~~ 184 (186)
T PRK14737 160 NEFDYKIINDDLEDAIADLEAIICG 184 (186)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHhc
Confidence 9999999999999999999999864
No 9
>PLN02772 guanylate kinase
Probab=99.87 E-value=8.2e-22 Score=206.22 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=124.6
Q ss_pred cchhhccC---CC-CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC---------------CCCCHHHHHHHHhcc
Q psy9827 443 YERVSLRH---PG-FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF---------------NFILWATIKDTAMYQ 500 (627)
Q Consensus 443 Ye~V~~~~---~~-~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~---------------~Fvs~e~f~~~i~~~ 500 (627)
=|+|++++ ++ .+|||||+||| |++|+++|++++|..|.+++++ ||+++++|+.+++.|
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g 199 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG 199 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence 45677776 33 78899999999 9999999999999888753221 799999999999877
Q ss_pred ccc-----CCcee-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHH
Q psy9827 501 SSK-----EPGMY-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKI 561 (627)
Q Consensus 501 ~~~-----~~~~Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~ 561 (627)
+|. .||+| +|+.++++|++||||+| +.. ..+...+.|+ +|||.|||++++ .| .++++++
T Consensus 200 ~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v--~IFI~PPSlEeLe~RL~~RGteseE~I~ 277 (398)
T PLN02772 200 KFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAI--FIFICPPSMEELEKRLRARGTETEEQIQ 277 (398)
T ss_pred ccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeE--EEEEeCCCHHHHHHHHHhcCCCCHHHHH
Confidence 654 59999 99999999999999999 444 3333345677 999999997654 23 3566678
Q ss_pred HHHHHHHH-HHH-HhcCcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827 562 KLFEQSQK-LEK-VWSHVFTGTITLSGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 562 ~~~~~~~~-~e~-~~~~~fd~vi~n~~l~~~~~~l~~~i~~~ 601 (627)
++++++.+ ++. .+.++||++|+|||+++|+++|+++|...
T Consensus 278 kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~ 319 (398)
T PLN02772 278 KRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGLD 319 (398)
T ss_pred HHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhhc
Confidence 88888743 542 34689999999999999999999999754
No 10
>PRK10139 serine endoprotease; Provisional
Probab=99.81 E-value=3.8e-19 Score=194.29 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=159.6
Q ss_pred cccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEcc
Q psy9827 7 RFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG 69 (627)
Q Consensus 7 ~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~ 69 (627)
.|..|.|++ +++++++ .|++|||| +++.+.+++..|++|++|...... |. +++.||+++...
T Consensus 198 ~~~~~iqtda~in~GnSGGpl~n~~G~vIGi~-~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~l 276 (455)
T PRK10139 198 GLENFIQTDASINRGNSGGALLNLNGELIGIN-TAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM 276 (455)
T ss_pred CcceEEEECCccCCCCCcceEECCCCeEEEEE-EEEEcCCCCccceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEEC
Confidence 367788887 9999988 48999999 999887788899999999753321 22 245899988764
Q ss_pred C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
. ..|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.|++......+
T Consensus 277 ~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v 356 (455)
T PRK10139 277 SADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV 356 (455)
T ss_pred CHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 2 35899999999999999999999999999999999987766555444678899999998776554444
Q ss_pred ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC
Q psy9827 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG 218 (627)
Q Consensus 139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~ 218 (627)
......... ... .+ + . +....+.|...... ...
T Consensus 357 ~~~~~~~~~-----------------~~~---------~~----~-------~-----~~~~g~~l~~~~~~-----~~~ 389 (455)
T PRK10139 357 TLDTSTSSS-----------------ASA---------EM----I-------T-----PALQGATLSDGQLK-----DGT 389 (455)
T ss_pred EECCCCCcc-----------------ccc---------cc----c-------c-----ccccccEecccccc-----cCC
Confidence 321100000 000 00 0 0 00000011110000 012
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~ 283 (627)
.|++|..|.++ ++|..+||++||+|++|||+++. +++++..++++..+.+.|.|.|++.
T Consensus 390 ~Gv~V~~V~~~----spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKG----SPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 47899999876 46677899999999999999999 9999999999877889999999764
No 11
>KOG3209|consensus
Probab=99.80 E-value=5.6e-18 Score=181.50 Aligned_cols=227 Identities=26% Similarity=0.382 Sum_probs=177.3
Q ss_pred EEeccC-CceeEEEEccC----CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeeEE
Q psy9827 54 ITFQKE-GSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSL--QDQIHL 125 (627)
Q Consensus 54 v~l~k~-g~lG~~i~g~~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~--g~~V~L 125 (627)
..|+|+ .||||+|.||+ +..+-|.+|.+++||++.| |.+||.|+.|||..+.+.||.+|+.+++.. +..|.|
T Consensus 348 t~LvKg~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L 427 (984)
T KOG3209|consen 348 TKLVKGYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDL 427 (984)
T ss_pred EEEeecccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeE
Confidence 456665 49999999996 3468899999999999999 999999999999999999999999999865 999999
Q ss_pred EEEeCCccc-----------c----------------e------------------------eeecCCCC----------
Q psy9827 126 IVQNRRDEY-----------E----------------H------------------------VVASQRGD---------- 144 (627)
Q Consensus 126 ~v~r~~~~~-----------~----------------~------------------------~v~~~~~~---------- 144 (627)
+++|.-+.. . . ++++..+.
T Consensus 428 ~lcRgyelp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~sss~~~a~~~~~~el~ti~i~kgpegfgftiADsPtg 507 (984)
T KOG3209|consen 428 VLCRGYELPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPSSSTHLAQHDGPPELTTIKIVKGPEGFGFTIADSPTG 507 (984)
T ss_pred EEecCccCCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCCCccccccCCCCcccEEEeeecCCCCCCceeccCCCC
Confidence 999851100 0 0 00110000
Q ss_pred -----------ccccccCCeeeccCCeecCcCChHHHHHHHhhc--CCeEEEEEeecc----------------------
Q psy9827 145 -----------SFHIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRRI---------------------- 189 (627)
Q Consensus 145 -----------~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~s--g~~v~l~v~r~~---------------------- 189 (627)
--.+..||.|+.+|+..+.+++|.+++++++++ |..+.|.+.|.-
T Consensus 508 qrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~ 587 (984)
T KOG3209|consen 508 QRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQM 587 (984)
T ss_pred CceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccc
Confidence 126778999999999999999999999999986 567888888750
Q ss_pred --cCC---------C---C--C-----------------------------C--------CccEEEEEeecCCCCCeeee
Q psy9827 190 --VLP---------A---S--P-----------------------------E--------PQTLRVQLSKSRKKDDFGII 216 (627)
Q Consensus 190 --~~p---------~---~--~-----------------------------~--------~~~~~V~L~k~~~~~~~gi~ 216 (627)
..| . + + . ...+.|.|.+...+.||.+-
T Consensus 588 s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rkesGFGFRiL 667 (984)
T KOG3209|consen 588 SSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKESGFGFRIL 667 (984)
T ss_pred cccccccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeeccccceEEe
Confidence 000 0 0 0 0 02356888877665555555
Q ss_pred eC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827 217 LG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP 283 (627)
Q Consensus 217 ~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~ 283 (627)
+| .+|+|..|.++ |+|..+|.|+.||.|+.|+|++|.|++|.+++.+|..+ .+.|.|+|.|...
T Consensus 668 GG~ep~qpi~iG~Iv~l---GaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~ 737 (984)
T KOG3209|consen 668 GGDEPGQPIYIGAIVPL---GAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVR 737 (984)
T ss_pred cCCCCCCeeEEeeeeec---ccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeee
Confidence 55 47999999988 68889999999999999999999999999999999874 4689999988543
No 12
>PRK10942 serine endoprotease; Provisional
Probab=99.80 E-value=8.7e-19 Score=192.34 Aligned_cols=220 Identities=23% Similarity=0.310 Sum_probs=158.4
Q ss_pred cccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEE----Ee-----ccCCceeEEEEcc
Q psy9827 7 RFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFI----TF-----QKEGSVGIRLTGG 69 (627)
Q Consensus 7 ~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v----~l-----~k~g~lG~~i~g~ 69 (627)
.|..|.|++ +++++++ .|++|||| +++.+.++...+++|++|..... .+ ..+|+||+.++..
T Consensus 219 ~~~~~iqtda~i~~GnSGGpL~n~~GeviGI~-t~~~~~~g~~~g~gfaIP~~~~~~v~~~l~~~g~v~rg~lGv~~~~l 297 (473)
T PRK10942 219 NYENFIQTDAAINRGNSGGALVNLNGELIGIN-TAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL 297 (473)
T ss_pred cccceEEeccccCCCCCcCccCCCCCeEEEEE-EEEEcCCCCcccEEEEEEHHHHHHHHHHHHhccccccceeeeEeeec
Confidence 577888887 8888877 48999999 99988888888999999964321 11 2346899988753
Q ss_pred C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
+ ..|++|..|.++|||+++||++||+|++|||..+.++.+..........++.+.|++.|++......+
T Consensus 298 ~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v 377 (473)
T PRK10942 298 NSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNV 377 (473)
T ss_pred CHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEE
Confidence 1 35899999999999999999999999999999999987766555555678899999998776544433
Q ss_pred ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC
Q psy9827 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG 218 (627)
Q Consensus 139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~ 218 (627)
.......... . .....+.+.. ..+... ...
T Consensus 378 ~l~~~~~~~~--~------------------------~~~~~lGl~g----------------~~l~~~--------~~~ 407 (473)
T PRK10942 378 ELQQSSQNQV--D------------------------SSNIFNGIEG----------------AELSNK--------GGD 407 (473)
T ss_pred EeCcCccccc--c------------------------ccccccccee----------------eecccc--------cCC
Confidence 2211000000 0 0000000000 000000 001
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~ 283 (627)
.|++|..|.++ ++|..+||++||+|++|||+++. +.+++.++++..+..+.|+|.|++.
T Consensus 408 ~gvvV~~V~~~----S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPG----TPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 37899999876 46667899999999999999999 8999999999877889999999764
No 13
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.80 E-value=6e-19 Score=192.79 Aligned_cols=228 Identities=23% Similarity=0.316 Sum_probs=161.0
Q ss_pred CcccccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEE----e-----ccCCceeEEEEc
Q psy9827 6 PRFITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----F-----QKEGSVGIRLTG 68 (627)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l-----~k~g~lG~~i~g 68 (627)
..|..+.+++ +++++++ .|++|||| +++.+.+++..+++|++|...... + ...++||+++..
T Consensus 164 ~~~~~~i~tda~i~~GnSGGpl~n~~G~viGI~-~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~ 242 (428)
T TIGR02037 164 GDYENFIQTDAAINPGNSGGPLVNLRGEVIGIN-TAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGGKVQRGWLGVTIQE 242 (428)
T ss_pred CCccceEEECCCCCCCCCCCceECCCCeEEEEE-eEEEcCCCCccceEEEEEhHHHHHHHHHHHhcCcCcCCcCceEeec
Confidence 4566677776 8888877 48899999 998887777788899998543321 1 123689999887
Q ss_pred cC-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827 69 GN-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137 (627)
Q Consensus 69 ~~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~ 137 (627)
.. ..|++|..|.++|||+++||++||+|++|||..+.++.+..........++.+.|++.|++......
T Consensus 243 ~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 322 (428)
T TIGR02037 243 VTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTIT 322 (428)
T ss_pred CCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 53 3689999999999999999999999999999999988776665555577899999999987665544
Q ss_pred eecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee
Q psy9827 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL 217 (627)
Q Consensus 138 v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~ 217 (627)
+........ .........|..+..++... ...|++..
T Consensus 323 v~l~~~~~~---~~~~~~~~lGi~~~~l~~~~----------------------------------------~~~~~l~~ 359 (428)
T TIGR02037 323 VTLGASPEE---QASSSNPFLGLTVANLSPEI----------------------------------------RKELRLKG 359 (428)
T ss_pred EEECcCCCc---cccccccccceEEecCCHHH----------------------------------------HHHcCCCc
Confidence 432211100 00000001111111111110 01122222
Q ss_pred C-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827 218 G-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 283 (627)
Q Consensus 218 ~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~ 283 (627)
. .|++|..|.++ ++|..+||++||+|++|||+++. +.+++.+++++ .++.+.|.|.|++.
T Consensus 360 ~~~Gv~V~~V~~~----SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 360 DVKGVVVTKVVSG----SPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CcCceEEEEeCCC----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 2 47899999876 46667889999999999999999 89999999986 36789999999764
No 14
>KOG0707|consensus
Probab=99.71 E-value=5.3e-17 Score=156.69 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=117.1
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhcccccC-----Cce
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSSKE-----PGM 507 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~~~-----~~~ 507 (627)
|..-+||||+||+ |.++.++|++++|..|+.. +. +||+++++|+.|++.+++++ ||+
T Consensus 34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~ 113 (231)
T KOG0707|consen 34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK 113 (231)
T ss_pred CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence 4556999999999 9999999999999988762 11 17999999999998887654 999
Q ss_pred e-----hHHhHHhCCCcEEEecC--CceeccccCCCCceeEEEEcCCCcccC-----CCCCHH--HHHHHHHHHHHHHHH
Q psy9827 508 Y-----QGKDSMYQGKDSMYQGK--ESMYQGKDSMYQGKDSMYQGKDSMYQG-----KDIKKE--VKIKLFEQSQKLEKV 573 (627)
Q Consensus 508 Y-----~V~~v~~~gk~ciLdi~--~~l~~~~~~~~P~~~vIFI~ppsl~~~-----~~~~e~--~~~~~~~~~~~~e~~ 573 (627)
| +|+++...||.|+|||+ +...+|...+.++ +||++|||...+ .|.+|. ++.+.+. +.+.|.+
T Consensus 114 yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i--~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~-sa~~e~~ 190 (231)
T KOG0707|consen 114 YGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAI--YIFIKPPSIKILEERLRARGTETEESLLKRLK-SAEEEFE 190 (231)
T ss_pred CCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceE--EEEecCCcchhHHHHhhccCcchHHHHHHHHH-hhhhhhc
Confidence 9 88999999999999999 3445555578889 999999994333 445443 3444444 3345655
Q ss_pred hcC---cccEEEEC-CCHHHHHHHHHHHHHhhCC
Q psy9827 574 WSH---VFTGTITL-SGVDVWYRKTRELIEKQQS 603 (627)
Q Consensus 574 ~~~---~fd~vi~n-~~l~~~~~~l~~~i~~~~~ 603 (627)
+.. .||++|+| ++++++|.+++.++..+..
T Consensus 191 ~~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~ 224 (231)
T KOG0707|consen 191 ILENSGSFDLVIVNSDRLEEAYKELEIFISSDDK 224 (231)
T ss_pred cccCCccccceecCCCchhhhhhhhhhhhhHHHH
Confidence 554 49999999 9999999999998876543
No 15
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.55 E-value=4.3e-14 Score=139.25 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=106.8
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccC--------CC-------CCCCCHHHHHHHHhccccc-----CCce
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAP--------RK-------FNFILWATIKDTAMYQSSK-----EPGM 507 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~--------~~-------~~Fvs~e~f~~~i~~~~~~-----~~~~ 507 (627)
|+..+.|||+||+ |+||.++|.+..+ .|..+ ++ +||+++++|+.++..|.+. .||+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 5678999999999 9999999987654 34331 11 1699999999998766543 5899
Q ss_pred e-----hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcc---cC--CCCC--HHHHHHHHHHHHHHHHH
Q psy9827 508 Y-----QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMY---QG--KDIK--KEVKIKLFEQSQKLEKV 573 (627)
Q Consensus 508 Y-----~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~---~~--~~~~--e~~~~~~~~~~~~~e~~ 573 (627)
| +|+.++++|++||++++ +.+ .++ +++|..++||+.|||.+ ++ +|.. ++++.+++..+. .|..
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~--~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~-~e~~ 165 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDVQGAASIK--RLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAP-LELE 165 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHH--HhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHh
Confidence 9 89999999999999999 544 332 56785448999999954 22 3433 333444444432 2233
Q ss_pred hcCcccEEEEC--CCHHHHHHHHHHHHHhh
Q psy9827 574 WSHVFTGTITL--SGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 574 ~~~~fd~vi~n--~~l~~~~~~l~~~i~~~ 601 (627)
..+.||++++| +++++++++|.++|...
T Consensus 166 ~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 166 QLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 34568999998 48999999999999875
No 16
>KOG3580|consensus
Probab=99.42 E-value=6.4e-13 Score=140.47 Aligned_cols=140 Identities=39% Similarity=0.619 Sum_probs=123.5
Q ss_pred CccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecc--cC------C-----------------------
Q psy9827 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI--VL------P----------------------- 192 (627)
Q Consensus 144 ~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~--~~------p----------------------- 192 (627)
..+.|+.+|+++.|||++++++.|..+++.|+.++....++++|+. .. |
T Consensus 53 AeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg 132 (1027)
T KOG3580|consen 53 AEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSG 132 (1027)
T ss_pred cccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccceeeccccCCCCCCCCccccccchhccCccccccc
Confidence 3568999999999999999999999999999999999999998860 00 0
Q ss_pred ----------------------------------------------------C--------CCCCccEEEEEeecCCCCC
Q psy9827 193 ----------------------------------------------------A--------SPEPQTLRVQLSKSRKKDD 212 (627)
Q Consensus 193 ----------------------------------------------------~--------~~~~~~~~V~L~k~~~~~~ 212 (627)
. ...+.+++|.|+|......
T Consensus 133 ~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEE 212 (1027)
T KOG3580|consen 133 YSERSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEE 212 (1027)
T ss_pred ccccccccccCCcccccccccccCCccccccccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchh
Confidence 0 0112358999999999999
Q ss_pred eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCC
Q psy9827 213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286 (627)
Q Consensus 213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~~~~ 286 (627)
||+.+++.|||++|... +.|++.++|+.||+||.|||+...+|++.++..+|.++.+.+.|+|+|+.....
T Consensus 213 yGlrLgSqIFvKeit~~---gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtL 283 (1027)
T KOG3580|consen 213 YGLRLGSQIFVKEITRT---GLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTL 283 (1027)
T ss_pred hcccccchhhhhhhccc---chhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCcee
Confidence 99999999999999865 789999999999999999999999999999999999999999999999887654
No 17
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.42 E-value=2.1e-12 Score=124.28 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=106.4
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY---- 508 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y---- 508 (627)
++++|+||+ |+||.+.|...+|..+.. |.. ++|++.++|.+++..+++ +.+++|
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 689999999 999999999987764432 111 268999999998765543 357888
Q ss_pred -hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccC-----C--CCCHHHHHHHHHHHHHHHHHhcCcc
Q psy9827 509 -QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQG-----K--DIKKEVKIKLFEQSQKLEKVWSHVF 578 (627)
Q Consensus 509 -~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~-----~--~~~e~~~~~~~~~~~~~e~~~~~~f 578 (627)
.|+.++++|++||+|++ +.. ..+.....|+ .||+.||+.+.+ + ..++++++++++... .+.++.++|
T Consensus 82 ~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~--~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~-~~~~~~~~~ 158 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEIDVQGARQVKKKFPDAV--SIFILPPSLEELERRLRKRGTDSEEVIERRLAKAK-KEIAHADEF 158 (180)
T ss_pred HHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcE--EEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhccccC
Confidence 78999999999999999 443 2222233567 899999984322 2 334555777776654 466788899
Q ss_pred cEEEECCCHHHHHHHHHHHHH
Q psy9827 579 TGTITLSGVDVWYRKTRELIE 599 (627)
Q Consensus 579 d~vi~n~~l~~~~~~l~~~i~ 599 (627)
|++|+|+|+++++++|++++.
T Consensus 159 d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 159 DYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred cEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 18
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.39 E-value=9.3e-13 Score=121.08 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=88.4
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccCCC---------------CCCCCHHHHHHHHhccccc-----CCcee----
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRK---------------FNFILWATIKDTAMYQSSK-----EPGMY---- 508 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~---------------~~Fvs~e~f~~~i~~~~~~-----~~~~Y---- 508 (627)
||+|+||+ |++|.++|.+.+|..|...++ ++|++.++|.+++..++++ .+|+|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 68999999 999999999988876654211 2699999999998776543 48888
Q ss_pred -hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC
Q psy9827 509 -QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS 585 (627)
Q Consensus 509 -~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~ 585 (627)
+|++++++|++||||++ +.+ .++.....|+ +|||.|| |+||+|+
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~--~I~i~~~-------------------------------~~~~~~~ 127 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAV--SIFILPP-------------------------------DYVIVND 127 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeE--EEEEECC-------------------------------CeEEeCC
Confidence 79999999999999999 555 4444466678 9999998 9999999
Q ss_pred CHHHHHHHHH
Q psy9827 586 GVDVWYRKTR 595 (627)
Q Consensus 586 ~l~~~~~~l~ 595 (627)
++++++++|+
T Consensus 128 ~~~~~~~~~~ 137 (137)
T cd00071 128 DLEKAYEELK 137 (137)
T ss_pred CHHHHHHhhC
Confidence 9999999873
No 19
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.36 E-value=6.8e-12 Score=137.85 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=108.5
Q ss_pred CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCC
Q psy9827 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVND 152 (627)
Q Consensus 73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D 152 (627)
..+|..|.++|||++|||++||+|++|||+++.++.+..........++++.+++.|+++.....++.......
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~------ 200 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWA------ 200 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccc------
Confidence 35799999999999999999999999999999999888777666677889999999987654443322110000
Q ss_pred eeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeC---CcEEEEEeccC
Q psy9827 153 RIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILG---NKIFVKEVTHR 229 (627)
Q Consensus 153 ~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~---~gi~V~~V~~g 229 (627)
....... ....+|+... .+.+|..|.++
T Consensus 201 ---------~~~~~~~----------------------------------------~~~~lGl~~~~~~~~~vV~~V~~~ 231 (449)
T PRK10779 201 ---------FEPDKQD----------------------------------------PVSSLGIRPRGPQIEPVLAEVQPN 231 (449)
T ss_pred ---------cCccccc----------------------------------------hhhcccccccCCCcCcEEEeeCCC
Confidence 0000000 0001111111 13678999776
Q ss_pred CCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827 230 LDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP 283 (627)
Q Consensus 230 ~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~ 283 (627)
++|..+||++||+|++|||+++. +.+++...++. .++.+.+.|.|++.
T Consensus 232 ----SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 232 ----SAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred ----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCE
Confidence 56777899999999999999998 89999999887 45689999998764
No 20
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.31 E-value=1.2e-11 Score=102.83 Aligned_cols=75 Identities=41% Similarity=0.792 Sum_probs=67.8
Q ss_pred EEecc--CCceeEEEEccCC---CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827 54 ITFQK--EGSVGIRLTGGNK---VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128 (627)
Q Consensus 54 v~l~k--~g~lG~~i~g~~~---~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~ 128 (627)
+.+.| .++|||++.++.+ .+++|+.|.++|||+++||++||+|++|||.++.++++.+++.+++.++..|+|+|+
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 45555 3589999999866 489999999999999999999999999999999999999999999998889999875
No 21
>KOG3605|consensus
Probab=99.27 E-value=1.2e-11 Score=132.61 Aligned_cols=158 Identities=15% Similarity=0.277 Sum_probs=124.0
Q ss_pred eEEEeccC-C-ceeEEEEccCCC----CEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCe
Q psy9827 52 RFITFQKE-G-SVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLS--LQDQ 122 (627)
Q Consensus 52 r~v~l~k~-g-~lG~~i~g~~~~----gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~--~g~~ 122 (627)
+.|.+.|. | .||+.|+..... -++|.+...++||+++| |-.||+|++|||.++.+++.......++. ....
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~ 726 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA 726 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence 55666553 4 799999886442 36788999999999999 99999999999999999998887777773 3456
Q ss_pred eEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEE
Q psy9827 123 IHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRV 202 (627)
Q Consensus 123 V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V 202 (627)
|.|+|.+.+ ...+|
T Consensus 727 VkltiV~cp------------------------------------------------------------------PV~~V 740 (829)
T KOG3605|consen 727 VKLNIVSCP------------------------------------------------------------------PVTTV 740 (829)
T ss_pred EEEEEecCC------------------------------------------------------------------CceEE
Confidence 666666322 23344
Q ss_pred EEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827 203 QLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280 (627)
Q Consensus 203 ~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r 280 (627)
.+.+......+||.+.+||+++-+. |..|..||+++|-+|++|||++|-...|+-++++|..+-+.|.++-.+
T Consensus 741 ~I~RPd~kyQLGFSVQNGiICSLlR-----GGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMP 813 (829)
T KOG3605|consen 741 LIRRPDLRYQLGFSVQNGIICSLLR-----GGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMP 813 (829)
T ss_pred EeecccchhhccceeeCcEeehhhc-----ccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcch
Confidence 4444455667888888998877654 347788999999999999999999999999999999988888776543
No 22
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.26 E-value=5.9e-11 Score=116.79 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=107.2
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCccc-------CCC-------CCCCCHHHHHHHHhcccc-----cCCcee--
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSA-------PRK-------FNFILWATIKDTAMYQSS-----KEPGMY-- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-------~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y-- 508 (627)
..+.|+|+||+ |++|.+.|...+|..+.. |.. .+|++.++|..++..+.+ +.+++|
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 35789999999 999999999887732221 111 269999999998765543 247777
Q ss_pred ---hHHhHHhCCCcEEEecC-Cce--eccccCCCCceeEEEEcCCCcccC-----CC--CCHHHHHHHHHHHHHHHHHhc
Q psy9827 509 ---QGKDSMYQGKDSMYQGK-ESM--YQGKDSMYQGKDSMYQGKDSMYQG-----KD--IKKEVKIKLFEQSQKLEKVWS 575 (627)
Q Consensus 509 ---~V~~v~~~gk~ciLdi~-~~l--~~~~~~~~P~~~vIFI~ppsl~~~-----~~--~~e~~~~~~~~~~~~~e~~~~ 575 (627)
+|+.++++|+.||+|++ +.. .. +....++ +||+.||+.+.+ .| .+++.+++++.... .+.++.
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~-~~~~~~~--~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~ 159 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDWQGARQVK-KKMPDAV--SIFILPPSLEELERRLRGRGTDSEEVIARRLAKAR-EEIAHA 159 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHH-HhCCCcE--EEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhH
Confidence 79999999999999999 333 33 1122457 899999984332 23 45565666666553 456677
Q ss_pred CcccEEEECCCHHHHHHHHHHHHHhh
Q psy9827 576 HVFTGTITLSGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 576 ~~fd~vi~n~~l~~~~~~l~~~i~~~ 601 (627)
+.||++|+|+++++++.+|..++...
T Consensus 160 ~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 160 SEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred HhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999886
No 23
>KOG3812|consensus
Probab=99.25 E-value=5.4e-11 Score=118.70 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=145.6
Q ss_pred ceeeCCCCCCCCCCCccCcCCCCCCCCCC--CCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHHHH
Q psy9827 313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRS--RNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELAT 390 (627)
Q Consensus 313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~--~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~~~ 390 (627)
.|-||+..+| +..-|+..|.+.-+++ ..|+|||. .+... .||-.+-+.+. ...|+|||..+.|..+.
T Consensus 58 AFAV~tnv~Y---~gslde~~Pv~g~aisF~~kDFlHIk-eKynn----DWWIGRlVkeg---~e~gFiPsp~rLen~r~ 126 (475)
T KOG3812|consen 58 AFAVRTNVSY---DGSLDEDSPVQGHAISFEAKDFLHIK-EKYNN----DWWIGRLVKEG---CEIGFIPSPVRLENIRL 126 (475)
T ss_pred eEEEEecccc---CCccCCCCCCCCceeeeccccceeeh-hhccc----chhHHHHhhcC---CccccccchHHHHHHHh
Confidence 3447888888 5555666777776665 89999993 33322 59999877643 58999999999887765
Q ss_pred HhhcccccccccccccccchhccccCccCCCCCCccCcccccccCCCCCccccchhhccCCCCCceEEEeCcc------H
Q psy9827 391 AQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPV------A 464 (627)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Ye~V~~~~~~~~RpvVl~Gp~------k 464 (627)
.+.++++.. +..+...- -.+.|.++..+.+..|.. -.+.+++|..| ...|||||+||+ -
T Consensus 127 ~~e~~~~~~-----~n~ssl~~-vg~r~stpp~ta~~kd~~----~~E~~pPYdVV-----PSmRPvVLvGPsLkgyevT 191 (475)
T KOG3812|consen 127 QQEQSSKSS-----GNSSSLGD-VGSRRSTPPSTADQKDKS----ITEHVPPYDVV-----PSMRPVVLVGPSLKGYEVT 191 (475)
T ss_pred hhhhhcccC-----CCccccCC-cccCCCCCCChhhhhhhh----hcccCCccccC-----CCCCceEEecCccccccHH
Confidence 443322211 11111100 011111121111222210 02456888866 357999999999 3
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCHH-HH-HHHH-hcc------ccc--CCcee----hHHhHH---hCCCcEEEecC-
Q psy9827 465 DLARDKLLKDFPDKFSAPRKFNFILWA-TI-KDTA-MYQ------SSK--EPGMY----QGKDSM---YQGKDSMYQGK- 525 (627)
Q Consensus 465 ~~l~~~Ll~~~p~~f~~~~~~~Fvs~e-~f-~~~i-~~~------~~~--~~~~Y----~V~~v~---~~gk~ciLdi~- 525 (627)
+.+.+.|.+.-..+|.--..-..|+.+ .. +..+ ..+ +.- ...+- +|+.|. .+=.-++||.+
T Consensus 192 dmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~RsslaevqsEiErIfelarsLqLvvlDadt 271 (475)
T KOG3812|consen 192 DMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADT 271 (475)
T ss_pred HHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccchhhHHHHHHHHHHHHHHHhhceEEEecCCc
Confidence 344444555444556531111111110 00 0000 000 000 00011 455443 34566788888
Q ss_pred ----Cce-eccccCCCCceeEEEEcCCCcccC----CCCCHHHHHH---HHHHHHHHHHHhcCcccEEEECCCHHHHHHH
Q psy9827 526 ----ESM-YQGKDSMYQGKDSMYQGKDSMYQG----KDIKKEVKIK---LFEQSQKLEKVWSHVFTGTITLSGVDVWYRK 593 (627)
Q Consensus 526 ----~~l-~~~~~~~~P~~~vIFI~ppsl~~~----~~~~e~~~~~---~~~~~~~~e~~~~~~fd~vi~n~~l~~~~~~ 593 (627)
..| .. .+.|| +|||+..|-+-| +...+++.+. .+-.+.++++--...||.||.-+.|++||+.
T Consensus 272 InhPaql~kt---sLaPI--~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAceh 346 (475)
T KOG3812|consen 272 INHPAQLAKT---SLAPI--IVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEH 346 (475)
T ss_pred CCCHHHhccC---CCcce--EEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHH
Confidence 344 45 79999 999999994332 2112223333 3445567888888899999998899999999
Q ss_pred HHHHHHhh
Q psy9827 594 TRELIEKQ 601 (627)
Q Consensus 594 l~~~i~~~ 601 (627)
|.+.++..
T Consensus 347 la~yLEaY 354 (475)
T KOG3812|consen 347 LAEYLEAY 354 (475)
T ss_pred HHHHHHHH
Confidence 99999865
No 24
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.19 E-value=1.8e-10 Score=125.45 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=100.3
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccC
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVN 151 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~ 151 (627)
.+.+|..|.++|||++|||++||+|++|||..+.++.+......... .++.+++.|++......+.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~~l~v~------------ 193 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENWTFEVM------------ 193 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCceEeccc------------
Confidence 68899999999999999999999999999999998877665444444 6788888875533211000
Q ss_pred CeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCC
Q psy9827 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD 231 (627)
Q Consensus 152 D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~ 231 (627)
+.+ .... ...+++|..|.++
T Consensus 194 -------------------------------l~~-------------------~~~~--------~~~g~vV~~V~~~-- 213 (420)
T TIGR00054 194 -------------------------------KEL-------------------IPRG--------PKIEPVLSDVTPN-- 213 (420)
T ss_pred -------------------------------ccc-------------------eecC--------CCcCcEEEEECCC--
Confidence 000 0000 0024678899776
Q ss_pred CCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827 232 NNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP 283 (627)
Q Consensus 232 ~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~ 283 (627)
++|+.+||++||+|++|||+++. +.+++...++. .+..+.+.|.|++.
T Consensus 214 --SpA~~aGL~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 214 --SPAEKAGLKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred --CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCE
Confidence 56677899999999999999999 89999999987 45579999999764
No 25
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.13 E-value=2e-10 Score=95.84 Aligned_cols=78 Identities=31% Similarity=0.437 Sum_probs=63.6
Q ss_pred CceeEEEEccCC-CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827 60 GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137 (627)
Q Consensus 60 g~lG~~i~g~~~-~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~ 137 (627)
|+||+++..... .|++|..|.++|||+++||++||+|++|||.++.+..+..........+++|+|++.|++......
T Consensus 1 ~~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 79 (82)
T PF13180_consen 1 GGLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVE 79 (82)
T ss_dssp -E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEE
T ss_pred CEECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence 468999988754 699999999999999999999999999999999877666655554588999999999987665543
No 26
>PRK10898 serine endoprotease; Provisional
Probab=99.06 E-value=6e-10 Score=118.49 Aligned_cols=128 Identities=23% Similarity=0.208 Sum_probs=95.0
Q ss_pred ccccCC-CCCCCCC-------CCceeeeecccccCCCC---CccccccCCCCceEEE----ec-----cCCceeEEEEcc
Q psy9827 10 TFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSP---DLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG 69 (627)
Q Consensus 10 ~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~---d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~ 69 (627)
.+.|++ +++++++ +|++|||| +++...++ .+.+++|++|...... +. .+++||+.+...
T Consensus 187 ~~iqtda~i~~GnSGGPl~n~~G~vvGI~-~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~~~~~~lGi~~~~~ 265 (353)
T PRK10898 187 NFLQTDASINHGNSGGALVNSLGELMGIN-TLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGYIGIGGREI 265 (353)
T ss_pred ceEEeccccCCCCCcceEECCCCeEEEEE-EEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCcccccccceEEEEC
Confidence 456665 9999987 48889999 77655432 2467889998664321 21 235799987653
Q ss_pred C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
. ..|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.|++..+...+
T Consensus 266 ~~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 345 (353)
T PRK10898 266 APLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV 345 (353)
T ss_pred CHHHHHhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 1 36899999999999999999999999999999998876655444444678899999998776554433
No 27
>KOG3550|consensus
Probab=99.06 E-value=3.8e-10 Score=100.28 Aligned_cols=83 Identities=29% Similarity=0.578 Sum_probs=75.8
Q ss_pred CceEEEeccC-CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827 50 DPRFITFQKE-GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125 (627)
Q Consensus 50 ~~r~v~l~k~-g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L 125 (627)
-||.+.|.|+ .||||.+.||. .++|||+.|.||+.|++.| |+.||++++|||+++.+-.|+.++.+|+..-..|.|
T Consensus 90 hprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvkl 169 (207)
T KOG3550|consen 90 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKL 169 (207)
T ss_pred CCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEE
Confidence 6799999887 59999999985 4689999999999999987 999999999999999999999999999999899999
Q ss_pred EEEeCCc
Q psy9827 126 IVQNRRD 132 (627)
Q Consensus 126 ~v~r~~~ 132 (627)
+|+.-+.
T Consensus 170 vvrytpk 176 (207)
T KOG3550|consen 170 VVRYTPK 176 (207)
T ss_pred EEecChH
Confidence 9986544
No 28
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=99.03 E-value=1.2e-09 Score=116.15 Aligned_cols=129 Identities=23% Similarity=0.232 Sum_probs=95.5
Q ss_pred cccccCC-CCCCCCC-------CCceeeeecccccCCC--CCccccccCCCCceEE----Eec-----cCCceeEEEEcc
Q psy9827 9 ITFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGS--PDLFSIFFVEPDPRFI----TFQ-----KEGSVGIRLTGG 69 (627)
Q Consensus 9 ~~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~--~d~~~~~~~~~~~r~v----~l~-----k~g~lG~~i~g~ 69 (627)
..+.|++ +++++++ .|++|||| +++...+ ...++++|++|..... .+. ..++||+.+...
T Consensus 186 ~~~iqtda~i~~GnSGGpl~n~~G~vIGI~-~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~~~r~~lGv~~~~~ 264 (351)
T TIGR02038 186 QNFIQTDAAINAGNSGGALINTNGELVGIN-TASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYIGVSGEDI 264 (351)
T ss_pred ceEEEECCccCCCCCcceEECCCCeEEEEE-eeeecccCCCCccceEEEecHHHHHHHHHHHhhcCcccceEeeeEEEEC
Confidence 4556665 8999977 58999999 7765443 3457888999955321 121 235799987653
Q ss_pred C-----------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 70 N-----------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 70 ~-----------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
. ..|++|..|.++|||+++||++||+|++|||.++.++.+......-...++.+.|++.|++......+
T Consensus 265 ~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 344 (351)
T TIGR02038 265 NSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPV 344 (351)
T ss_pred CHHHHHhcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 2 25899999999999999999999999999999999886655444434678899999998775544433
No 29
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=3.5e-09 Score=85.22 Aligned_cols=67 Identities=40% Similarity=0.668 Sum_probs=60.0
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeeEEEE
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-QDQIHLIV 127 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-g~~V~L~v 127 (627)
++||.+.+..+.+++|..|.++|||+++||++||+|++|||.++.++++.++...++.. +..++|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999998766689999999999999999999999999999999999998988888854 57888876
No 30
>KOG3550|consensus
Probab=98.96 E-value=2.2e-09 Score=95.50 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=74.8
Q ss_pred CccEEEEEeecCCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827 197 PQTLRVQLSKSRKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 272 (627)
Q Consensus 197 ~~~~~V~L~k~~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~ 272 (627)
..+.-|.|.|...+.||++-+| ++|||++|.|| |.+.+.+||+.||.+++|||.++.+-.|+.++.+|+.+.+
T Consensus 89 ahprvvelpktdeglgfnvmggkeqnspiyisriipg---gvadrhgglkrgdqllsvngvsvege~hekavellkaa~g 165 (207)
T KOG3550|consen 89 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG---GVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG 165 (207)
T ss_pred CCCceeecCccccccceeeccCcccCCceEEEeecCC---ccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence 4567788999988889988886 59999999998 7899999999999999999999999999999999999999
Q ss_pred eEEEEEEeC
Q psy9827 273 KLSLTIRRE 281 (627)
Q Consensus 273 ~v~l~V~r~ 281 (627)
.+.|+|.+-
T Consensus 166 svklvvryt 174 (207)
T KOG3550|consen 166 SVKLVVRYT 174 (207)
T ss_pred cEEEEEecC
Confidence 999999774
No 31
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.95 E-value=7.9e-09 Score=85.75 Aligned_cols=76 Identities=46% Similarity=0.804 Sum_probs=65.0
Q ss_pred eEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827 52 RFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127 (627)
Q Consensus 52 r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v 127 (627)
+.+.+.+. ++|||.+.+... .+++|..|.++|||+++||++||+|++|||.++.+++..++...+......++|++
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 34566664 689999998753 68999999999999999999999999999999999999999988887666777765
No 32
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.92 E-value=1.6e-08 Score=84.26 Aligned_cols=78 Identities=38% Similarity=0.643 Sum_probs=67.2
Q ss_pred EEEeccC-CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827 53 FITFQKE-GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129 (627)
Q Consensus 53 ~v~l~k~-g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r 129 (627)
.+.+.+. +.|||.+..... .+++|..|.++|||+++||++||+|++|||..+.++++.+....+...+..+.|++.|
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r 83 (85)
T smart00228 4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLR 83 (85)
T ss_pred EEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence 3455554 589999987654 6899999999999999999999999999999999999999888888777788888876
Q ss_pred C
Q psy9827 130 R 130 (627)
Q Consensus 130 ~ 130 (627)
.
T Consensus 84 ~ 84 (85)
T smart00228 84 G 84 (85)
T ss_pred C
Confidence 4
No 33
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.82 E-value=8.9e-09 Score=85.54 Aligned_cols=73 Identities=32% Similarity=0.488 Sum_probs=59.2
Q ss_pred EEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827 202 VQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 274 (627)
Q Consensus 202 V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 274 (627)
|++.|. ...+|||.+. .+++|.+|.++ ++|..+||++||+|++|||+++.++++++++.+++.+.+.+
T Consensus 2 v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~----~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v 76 (81)
T PF00595_consen 2 VTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPG----SPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPV 76 (81)
T ss_dssp EEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTT----SHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEE
T ss_pred EEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCC----ChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcE
Confidence 566774 4455555552 28999999987 34444459999999999999999999999999999999999
Q ss_pred EEEEE
Q psy9827 275 SLTIR 279 (627)
Q Consensus 275 ~l~V~ 279 (627)
+|+|+
T Consensus 77 ~L~V~ 81 (81)
T PF00595_consen 77 TLTVQ 81 (81)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99884
No 34
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.5e-08 Score=108.02 Aligned_cols=131 Identities=26% Similarity=0.301 Sum_probs=105.0
Q ss_pred ccccccCC-CCCCCCCC-------CceeeeecccccCCCCCccccccCCCCceEEE----ec-----cCCceeEEEEcc-
Q psy9827 8 FITFQKEG-SVGIRLTG-------GNKVGIFVTAVQPGSPDLFSIFFVEPDPRFIT----FQ-----KEGSVGIRLTGG- 69 (627)
Q Consensus 8 ~~~~~~~~-~~~~~~~~-------g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~----l~-----k~g~lG~~i~g~- 69 (627)
|..++|++ ++++.++. |++|||| +++...+++..+++|++|...... +. ..+.+|+.+...
T Consensus 181 ~~~~IqtdAain~gnsGgpl~n~~g~~iGin-t~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G~v~~~~lgv~~~~~~ 259 (347)
T COG0265 181 YVNFIQTDAAINPGNSGGPLVNIDGEVVGIN-TAIIAPSGGSSGIGFAIPVNLVAPVLDELISKGKVVRGYLGVIGEPLT 259 (347)
T ss_pred ccchhhcccccCCCCCCCceEcCCCcEEEEE-EEEecCCCCcceeEEEecHHHHHHHHHHHHHcCCccccccceEEEEcc
Confidence 77888888 99999984 7889999 999998888888999999653321 11 134677665432
Q ss_pred --------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827 70 --------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139 (627)
Q Consensus 70 --------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~ 139 (627)
...|++|..|.++|||+++|++.||.|+++||..+.+.............+..+.+.+.|+++.....+.
T Consensus 260 ~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~ 337 (347)
T COG0265 260 ADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKERELAVT 337 (347)
T ss_pred cccccCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEE
Confidence 1457999999999999999999999999999999999888777776667899999999998666554443
No 35
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=7.9e-08 Score=80.42 Aligned_cols=70 Identities=29% Similarity=0.574 Sum_probs=60.2
Q ss_pred CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeC
Q psy9827 60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNR 130 (627)
Q Consensus 60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~ 130 (627)
++||+.+... ..+++|..|.++|||+++||++||+|++|||.++.++++.+....+. ..+..+.|++.|.
T Consensus 2 ~~lG~~~~~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD-DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc-CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4688888753 46899999999999999999999999999999999997777776665 3578899999876
No 36
>KOG3553|consensus
Probab=98.75 E-value=1.2e-08 Score=84.57 Aligned_cols=58 Identities=41% Similarity=0.657 Sum_probs=53.4
Q ss_pred ceeEEEEccC------------CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy9827 61 SVGIRLTGGN------------KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118 (627)
Q Consensus 61 ~lG~~i~g~~------------~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~ 118 (627)
.+||.|.||- +.||||++|.+||||+.|||+.+|.|++|||.++.-+||.+|+..+++
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 5899999872 569999999999999999999999999999999999999999887775
No 37
>KOG3551|consensus
Probab=98.71 E-value=2.7e-08 Score=101.35 Aligned_cols=82 Identities=34% Similarity=0.510 Sum_probs=73.9
Q ss_pred eEEEeccC--CceeEEEEccC--CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEE
Q psy9827 52 RFITFQKE--GSVGIRLTGGN--KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126 (627)
Q Consensus 52 r~v~l~k~--g~lG~~i~g~~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~ 126 (627)
|.|.+.|. |||||+|-||. .-+|+|+.|.+|-.|++++ |..||.|++|||.++.+.+|++++..|++.|..|.|.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 66666663 69999999985 4689999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeCCcc
Q psy9827 127 VQNRRDE 133 (627)
Q Consensus 127 v~r~~~~ 133 (627)
|+..++.
T Consensus 166 vKy~REv 172 (506)
T KOG3551|consen 166 VKYMREV 172 (506)
T ss_pred eeeehhc
Confidence 9876654
No 38
>KOG3549|consensus
Probab=98.66 E-value=5.3e-08 Score=97.92 Aligned_cols=81 Identities=27% Similarity=0.529 Sum_probs=73.8
Q ss_pred CCceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827 49 PDPRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI 123 (627)
Q Consensus 49 ~~~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V 123 (627)
..-|+|++.+. ||||++|-||.+ -+++|+.|..+..|+..| |-+||-|++|||+.+..++|++++.+|+..|+.|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 35678888764 899999999865 478999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEEe
Q psy9827 124 HLIVQN 129 (627)
Q Consensus 124 ~L~v~r 129 (627)
+|+|..
T Consensus 133 tlTV~~ 138 (505)
T KOG3549|consen 133 TLTVKH 138 (505)
T ss_pred EEEeHh
Confidence 999975
No 39
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=1e-07 Score=102.91 Aligned_cols=96 Identities=25% Similarity=0.403 Sum_probs=83.9
Q ss_pred CCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHH
Q psy9827 36 PGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEA 112 (627)
Q Consensus 36 ~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~ 112 (627)
+..+|||+.|++....+.+...-. +++|+.+...+..++.|.++.+|+||+++||++||+|+.|||.++.+++-.++
T Consensus 73 s~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~a 152 (406)
T COG0793 73 SSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEA 152 (406)
T ss_pred HhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHH
Confidence 778899999999888876654433 48999998876578999999999999999999999999999999999998888
Q ss_pred HHHHh-cCCCeeEEEEEeCC
Q psy9827 113 VLFLL-SLQDQIHLIVQNRR 131 (627)
Q Consensus 113 ~~~l~-~~g~~V~L~v~r~~ 131 (627)
+..++ ..|..|+|++.|..
T Consensus 153 v~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 153 VKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred HHHhCCCCCCeEEEEEEEcC
Confidence 88777 78899999999963
No 40
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=1.9e-07 Score=77.24 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=51.5
Q ss_pred CCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccc
Q psy9827 71 KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135 (627)
Q Consensus 71 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~ 135 (627)
..|++|..|.++|||+++||++||+|++|||.++.++.+..........+..+.+++.|++....
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~ 73 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTTKLT 73 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCEEEE
Confidence 35899999999999999999999999999999999775543332222357899999998765443
No 41
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.58 E-value=3.8e-07 Score=88.36 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=91.7
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCC-CCccc----CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----hH
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFP-DKFSA----PRK-------FNFILWATIKDTAMYQSS-----KEPGMY----QG 510 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p-~~f~~----~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y----~V 510 (627)
..++|+||+ |+||.+.|....+ ..+.. .++ .+|++.++|..+++.+.+ +.||+| ++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 579999999 9999999977643 32222 111 267899999999877654 248999 99
Q ss_pred HhHHhCCCcEEEecC-Cce--eccccCC-CCceeEEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhcCcccE
Q psy9827 511 KDSMYQGKDSMYQGK-ESM--YQGKDSM-YQGKDSMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTG 580 (627)
Q Consensus 511 ~~v~~~gk~ciLdi~-~~l--~~~~~~~-~P~~~vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~ 580 (627)
++.+++|++||++.. ... .++ .+ .+. .+||+.+|- +.++ .+.+++++++++++.. .| ..+|+
T Consensus 83 ~~~l~~g~~VI~~G~~~~~~~~~~--~~~~~~-~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~-~~ad~ 154 (186)
T PRK10078 83 DLWLHAGFDVLVNGSRAHLPQARA--RYQSAL-LPVCLQVSPEILRQRLENRGRENASEINARLARAA----RY-QPQDC 154 (186)
T ss_pred HHHHhCCCEEEEeChHHHHHHHHH--HcCCCE-EEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh----hh-ccCCE
Confidence 999999999998766 221 121 12 233 145555443 2222 3334454555554432 12 24786
Q ss_pred EEECC--CHHHHHHHHHHHHHhhCCCC
Q psy9827 581 TITLS--GVDVWYRKTRELIEKQQSSP 605 (627)
Q Consensus 581 vi~n~--~l~~~~~~l~~~i~~~~~~~ 605 (627)
+++|+ ++++++++|..++...|.+.
T Consensus 155 ~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 155 HTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred EEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 65555 59999999999998777653
No 42
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.53 E-value=3.6e-07 Score=77.17 Aligned_cols=61 Identities=38% Similarity=0.575 Sum_probs=50.8
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCc
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~ 132 (627)
.|++|..|.++|||+++||++||+|++|||..+.++.+..........+..+.+.+.|++.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 4799999999999999999999999999999999876655444333457899999987653
No 43
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.52 E-value=1.7e-07 Score=101.17 Aligned_cols=102 Identities=24% Similarity=0.355 Sum_probs=76.8
Q ss_pred ccccCCCCCccccccCCCCceEEEec-c--CCceeEEEEccCC-----CCEEEEEeCCCChhhhcCCCCCCEEEEECCEe
Q psy9827 32 TAVQPGSPDLFSIFFVEPDPRFITFQ-K--EGSVGIRLTGGNK-----VGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103 (627)
Q Consensus 32 ~ai~~~~~d~~~~~~~~~~~r~v~l~-k--~g~lG~~i~g~~~-----~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~ 103 (627)
..+....+|+|+.|+...+....... . ..++|+.+..... .+++|..|.+||||+++||++||+|++|||.+
T Consensus 54 ~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~ 133 (389)
T PLN00049 54 RKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTS 133 (389)
T ss_pred HHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEE
Confidence 44457778999988765544322111 1 2478888764321 37999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHh-cCCCeeEEEEEeCCcc
Q psy9827 104 MKGITREEAVLFLL-SLQDQIHLIVQNRRDE 133 (627)
Q Consensus 104 v~~~~~~~~~~~l~-~~g~~V~L~v~r~~~~ 133 (627)
+.+++..++...+. ..+..|.|++.|.+..
T Consensus 134 v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~ 164 (389)
T PLN00049 134 TEGLSLYEAADRLQGPEGSSVELTLRRGPET 164 (389)
T ss_pred CCCCCHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 99988777766665 4678999999986644
No 44
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.50 E-value=7.5e-07 Score=73.57 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=53.9
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~ 134 (627)
.+|+.+... +.+++|..|.++|||+++||++||+|++|||.++.++. .+.. ....++.+.+++.|++...
T Consensus 2 ~~G~~~~~~-~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~-~~~~~~~v~l~v~r~g~~~ 71 (80)
T cd00990 2 YLGLTLDKE-EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLK-EYQAGDPVELTVFRDDRLI 71 (80)
T ss_pred cccEEEEcc-CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHH-hcCCCCEEEEEEEECCEEE
Confidence 478887644 45799999999999999999999999999999997622 1211 1246778999998866543
No 45
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=1.1e-06 Score=72.33 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=52.9
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeCCcc
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNRRDE 133 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~~~~ 133 (627)
++||..... ...++|..|.++|+|+++||++||+|++|||.++.++.+.. ..+. ..+..+.+++.|++..
T Consensus 2 ~~~~~~g~~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~--~~l~~~~~~~~~l~v~r~~~~ 72 (79)
T cd00989 2 ILGFVPGGP-PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLV--DAVQENPGKPLTLTVERNGET 72 (79)
T ss_pred eeeEeccCC-ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHHCCCceEEEEEEECCEE
Confidence 466654333 34689999999999999999999999999999999775433 3333 3367899999876543
No 46
>KOG1892|consensus
Probab=98.43 E-value=4.4e-07 Score=101.38 Aligned_cols=83 Identities=29% Similarity=0.564 Sum_probs=75.2
Q ss_pred CCceEEEeccCCceeEEEEcc-----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy9827 49 PDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQ 122 (627)
Q Consensus 49 ~~~r~v~l~k~g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~ 122 (627)
|+...|+|+|.+|+|++|+.. ..-||||.+|.+|++|+..| |+.||++|.|||.++-+++.+.|+.++.+.|..
T Consensus 932 pei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen 932 PEIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNV 1011 (1629)
T ss_pred CceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCe
Confidence 566788999999999999863 23589999999999999999 999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9827 123 IHLIVQNRR 131 (627)
Q Consensus 123 V~L~v~r~~ 131 (627)
|.|.|...+
T Consensus 1012 V~leVaKqg 1020 (1629)
T KOG1892|consen 1012 VHLEVAKQG 1020 (1629)
T ss_pred EEEehhhhh
Confidence 999998654
No 47
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.42 E-value=3.7e-07 Score=96.77 Aligned_cols=102 Identities=20% Similarity=0.360 Sum_probs=76.2
Q ss_pred cccCCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCH
Q psy9827 33 AVQPGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109 (627)
Q Consensus 33 ai~~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~ 109 (627)
.+....+|+|+.|+...+......... .++|+.+... +.+++|..|.++|||+++||++||+|++|||.++.+++.
T Consensus 21 ~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~ 99 (334)
T TIGR00225 21 GMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSL 99 (334)
T ss_pred HHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCH
Confidence 344567899998876554433211111 3789888654 347999999999999999999999999999999999876
Q ss_pred HHHHHHHh-cCCCeeEEEEEeCCcccc
Q psy9827 110 EEAVLFLL-SLQDQIHLIVQNRRDEYE 135 (627)
Q Consensus 110 ~~~~~~l~-~~g~~V~L~v~r~~~~~~ 135 (627)
.++...+. ..+..+.|++.|.+....
T Consensus 100 ~~~~~~l~~~~g~~v~l~v~R~g~~~~ 126 (334)
T TIGR00225 100 DDAVALIRGKKGTKVSLEILRAGKSKP 126 (334)
T ss_pred HHHHHhccCCCCCEEEEEEEeCCCCce
Confidence 66655554 468899999998765443
No 48
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.34 E-value=1.9e-06 Score=71.10 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=50.3
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~ 137 (627)
.|++|..|.++|||+. ||++||+|++|||.++.++........-...+..+.|++.|++..+...
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~ 72 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPED 72 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence 4799999999999987 8999999999999999876544333222346789999999876554433
No 49
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.34 E-value=4.6e-06 Score=68.97 Aligned_cols=73 Identities=29% Similarity=0.438 Sum_probs=55.6
Q ss_pred EEEeec-CCCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEE
Q psy9827 202 VQLSKS-RKKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 276 (627)
Q Consensus 202 V~L~k~-~~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l 276 (627)
+.+.+. ..+.||.+... .+++|..|.++ +++..++|++||+|++|||.++.+++++++...++.....++|
T Consensus 4 ~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~----s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l 79 (82)
T cd00992 4 VTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPG----GPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTL 79 (82)
T ss_pred EEEEeCCCCCcCEEEeCcccCCCCeEEEEECCC----ChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEE
Confidence 445544 23334443333 37999999876 3555689999999999999999999999999999997777777
Q ss_pred EE
Q psy9827 277 TI 278 (627)
Q Consensus 277 ~V 278 (627)
.+
T Consensus 80 ~v 81 (82)
T cd00992 80 TV 81 (82)
T ss_pred EE
Confidence 65
No 50
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.31 E-value=5.5e-06 Score=79.57 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=89.7
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCC----ccc---CCC-------CCCCCHHHHHHHHhcccc-----cCCcee----
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDK----FSA---PRK-------FNFILWATIKDTAMYQSS-----KEPGMY---- 508 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~----f~~---~~~-------~~Fvs~e~f~~~i~~~~~-----~~~~~Y---- 508 (627)
+.++|+||+ |+|+.+.|....+.. |.. .++ .+|++.++|..++..+.+ +.+++|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 468999999 999999987764421 211 111 269999999988765432 246677
Q ss_pred hHHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhc-Cccc
Q psy9827 509 QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWS-HVFT 579 (627)
Q Consensus 509 ~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~-~~fd 579 (627)
.+...+++|+.||++.+ ..+ ..+ +.++...+||+.+|. +.++ .+..++++++++.+.. .|. ..+|
T Consensus 82 ~i~~~~~~g~~vv~~g~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~----~~~~~~~~ 155 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGSRAVLPEAR--QRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSA----RFAAAPAD 155 (179)
T ss_pred HHHHHHhcCCEEEEECCHHHHHHHH--HHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHh----hcccccCC
Confidence 66778889999999999 323 211 233322388988654 2222 3444444555554332 232 4567
Q ss_pred EE-EECC-CHHHHHHHHHHHHHh
Q psy9827 580 GT-ITLS-GVDVWYRKTRELIEK 600 (627)
Q Consensus 580 ~v-i~n~-~l~~~~~~l~~~i~~ 600 (627)
++ |.|+ ++++++.+|.+++..
T Consensus 156 ~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 156 VTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcc
Confidence 77 5564 799999999998864
No 51
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.25 E-value=2e-06 Score=97.62 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=75.2
Q ss_pred ccccCCCCCccccccCCCCceEEEeccC---CceeEEEEccCCCCEEEEEeCCCChhhhc-CCCCCCEEEEEC--C---E
Q psy9827 32 TAVQPGSPDLFSIFFVEPDPRFITFQKE---GSVGIRLTGGNKVGIFVTAVQPGSPASLQ-GLQPGDKILKVN--D---M 102 (627)
Q Consensus 32 ~ai~~~~~d~~~~~~~~~~~r~v~l~k~---g~lG~~i~g~~~~gi~V~~V~~gspA~~a-GL~~GD~Il~Vn--G---~ 102 (627)
+++... .|||+.||...+...+..... +|+|+.+... +.+++|..|.|||||+++ ||++||+|++|| | .
T Consensus 214 ~~m~~~-lDphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~ 291 (667)
T PRK11186 214 NAFARE-IDPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIV 291 (667)
T ss_pred HHHHhC-CCCCccccChHHHHHhhhccCCceeEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCccc
Confidence 444333 499999998777665443322 4789888764 346999999999999998 899999999999 4 3
Q ss_pred eCCCCCHHHHHHHHh-cCCCeeEEEEEeC
Q psy9827 103 DMKGITREEAVLFLL-SLQDQIHLIVQNR 130 (627)
Q Consensus 103 ~v~~~~~~~~~~~l~-~~g~~V~L~v~r~ 130 (627)
++.+++..+++.+++ ..|..|.|+|.|.
T Consensus 292 dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 292 DVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred ccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 566787778888777 6789999999874
No 52
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.24 E-value=1.1e-05 Score=66.93 Aligned_cols=75 Identities=29% Similarity=0.475 Sum_probs=58.1
Q ss_pred EEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827 201 RVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 274 (627)
Q Consensus 201 ~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 274 (627)
.+.+.+.. ..||+.. . .+++|..|.++ +++..++|++||+|++|||+.+.+++..+....+...+..+
T Consensus 4 ~~~~~~~~--~~~G~~~~~~~~~~~~~~i~~v~~~----s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~ 77 (85)
T smart00228 4 LVELEKGG--GGLGFSLVGGKDEGGGVVVSSVVPG----SPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV 77 (85)
T ss_pred EEEEEECC--CcccEEEECCCCCCCCEEEEEECCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 34455543 3444444 2 58999999876 34555679999999999999999999999999988877789
Q ss_pred EEEEEeC
Q psy9827 275 SLTIRRE 281 (627)
Q Consensus 275 ~l~V~r~ 281 (627)
.|.+.|+
T Consensus 78 ~l~i~r~ 84 (85)
T smart00228 78 TLTVLRG 84 (85)
T ss_pred EEEEEeC
Confidence 9998875
No 53
>KOG3552|consensus
Probab=98.22 E-value=1.5e-06 Score=97.24 Aligned_cols=77 Identities=32% Similarity=0.573 Sum_probs=70.5
Q ss_pred CceEEEeccCCceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827 50 DPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128 (627)
Q Consensus 50 ~~r~v~l~k~g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~ 128 (627)
.+|.+++.+...|||.++.| .+++|..|.+|+|+. | |++||+|++|||.++.+++++.++.+++.+...|.|+|.
T Consensus 55 ~pr~vq~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~ 130 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVC 130 (1298)
T ss_pred cchhhhhhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEe
Confidence 47888898888888888877 679999999999986 7 999999999999999999999999999999999999998
Q ss_pred eC
Q psy9827 129 NR 130 (627)
Q Consensus 129 r~ 130 (627)
+.
T Consensus 131 qP 132 (1298)
T KOG3552|consen 131 QP 132 (1298)
T ss_pred cc
Confidence 73
No 54
>KOG3571|consensus
Probab=98.18 E-value=4.4e-06 Score=88.29 Aligned_cols=79 Identities=32% Similarity=0.561 Sum_probs=66.6
Q ss_pred eEEEeccC--CceeEEEEcc----CCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh---cCCC
Q psy9827 52 RFITFQKE--GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL---SLQD 121 (627)
Q Consensus 52 r~v~l~k~--g~lG~~i~g~----~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~---~~g~ 121 (627)
.+|.|... ..|||+|+|. .+.||||.+|.+|++.+..| +.+||+||+||.+++.+++..+|+..|+ +...
T Consensus 251 ITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~g 330 (626)
T KOG3571|consen 251 ITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPG 330 (626)
T ss_pred EEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCC
Confidence 44455443 4799999993 36799999999999999999 9999999999999999999999999987 4456
Q ss_pred eeEEEEEeC
Q psy9827 122 QIHLIVQNR 130 (627)
Q Consensus 122 ~V~L~v~r~ 130 (627)
+++|+|...
T Consensus 331 Pi~ltvAk~ 339 (626)
T KOG3571|consen 331 PIKLTVAKC 339 (626)
T ss_pred CeEEEEeec
Confidence 788888754
No 55
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.16 E-value=8.9e-06 Score=65.18 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=47.7
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC-CeEEEEE
Q psy9827 220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTI 278 (627)
Q Consensus 220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~v~l~V 278 (627)
+++|..|.++ ++|..++|++||+|++|||.++.+++++++..+++... ..++|++
T Consensus 14 ~~~V~~v~~~----s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 14 GVVVLSVEPG----SPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CEEEEEeCCC----CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 8999999876 45556899999999999999999888899999999865 6788776
No 56
>KOG3549|consensus
Probab=98.15 E-value=1.1e-05 Score=81.61 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=68.2
Q ss_pred CccEEEEEeecC-CCCCeeeeeCC----cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827 197 PQTLRVQLSKSR-KKDDFGIILGN----KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 271 (627)
Q Consensus 197 ~~~~~V~L~k~~-~~~~~gi~~~~----gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~ 271 (627)
...++|++.+.. ++.|++|.+|. +++|+.|.+. ..|...|.|-+||.|+.|||+.+.+++|+|++.+|++++
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kd---QaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG 129 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKD---QAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG 129 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhh---hhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence 355677776643 44555666652 8999999876 567778999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCC
Q psy9827 272 EKLSLTIRREVP 283 (627)
Q Consensus 272 ~~v~l~V~r~~~ 283 (627)
+.|+|+|..-..
T Consensus 130 deVtlTV~~lr~ 141 (505)
T KOG3549|consen 130 DEVTLTVKHLRA 141 (505)
T ss_pred CEEEEEeHhhhc
Confidence 999999965433
No 57
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.14 E-value=8.6e-06 Score=82.72 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=61.0
Q ss_pred ceeEEEEcc--CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccce
Q psy9827 61 SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH 136 (627)
Q Consensus 61 ~lG~~i~g~--~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~ 136 (627)
.+|++.... ...|+.|..+.++++|+++||++||+|++|||.++.++............++.++|+|.|++.....
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i 255 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQREDI 255 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence 567766542 2469999999999999999999999999999999998877655544446778999999998765443
No 58
>KOG3606|consensus
Probab=98.11 E-value=6.1e-06 Score=80.81 Aligned_cols=78 Identities=26% Similarity=0.520 Sum_probs=68.8
Q ss_pred eEEEeccCC---ceeEEEEccC-----------CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827 52 RFITFQKEG---SVGIRLTGGN-----------KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFL 116 (627)
Q Consensus 52 r~v~l~k~g---~lG~~i~g~~-----------~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l 116 (627)
|.|.|.|.| .|||-|..|. -.||||+.+.||+.|+..| |.+.|.+|+|||+.|.+.+.+++..++
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 456677765 7999998873 3689999999999999999 899999999999999999999999999
Q ss_pred hcCCCeeEEEEEe
Q psy9827 117 LSLQDQIHLIVQN 129 (627)
Q Consensus 117 ~~~g~~V~L~v~r 129 (627)
.+....+.++|..
T Consensus 240 vANshNLIiTVkP 252 (358)
T KOG3606|consen 240 VANSHNLIITVKP 252 (358)
T ss_pred hhcccceEEEecc
Confidence 8888888888874
No 59
>KOG3651|consensus
Probab=98.10 E-value=1e-05 Score=80.35 Aligned_cols=78 Identities=23% Similarity=0.466 Sum_probs=68.2
Q ss_pred ceEEEeccC--CceeEEEEccCC--CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827 51 PRFITFQKE--GSVGIRLTGGNK--VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125 (627)
Q Consensus 51 ~r~v~l~k~--g~lG~~i~g~~~--~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L 125 (627)
+..|.+.|. +-+||+|.||.. +.+||..|..++||++.| ++.||.|++|||+++.+.+..+++.+++..-++|.+
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 345677775 469999999865 357899999999999999 999999999999999999999999999988888888
Q ss_pred EEE
Q psy9827 126 IVQ 128 (627)
Q Consensus 126 ~v~ 128 (627)
.+.
T Consensus 85 hyN 87 (429)
T KOG3651|consen 85 HYN 87 (429)
T ss_pred Eeh
Confidence 765
No 60
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.03 E-value=1.2e-05 Score=66.84 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=50.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~ 283 (627)
.+++|.+|.++ ++|..+||++||+|++|||.++. +..++...+.. .+..++|+|.|++.
T Consensus 14 ~g~~V~~V~~~----spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 14 GGVVVVSVIPG----SPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp SSEEEEEESTT----SHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred CeEEEEEeCCC----CcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 48999999876 56677889999999999999998 89999999964 56799999999764
No 61
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.95 E-value=3.7e-05 Score=63.42 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=50.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~ 283 (627)
.|++|.+|.++ +++..+||++||+|++|||.++. +++++...|... +..+.+.+.|++.
T Consensus 10 ~Gv~V~~V~~~----spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 10 AGVVIVGVIVG----SPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CcEEEEEECCC----ChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence 57899999876 45667899999999999999999 889999999874 5688999988653
No 62
>KOG3551|consensus
Probab=97.94 E-value=1.5e-05 Score=81.78 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=66.0
Q ss_pred cEEEEEeecCCCCCeeeee--C----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827 199 TLRVQLSKSRKKDDFGIIL--G----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 272 (627)
Q Consensus 199 ~~~V~L~k~~~~~~~gi~~--~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~ 272 (627)
...|.+.|.. ..|+||.+ | -+|+|+.|.+|. .++..+.|..||.|++|||.++...||+|+++.|+++++
T Consensus 85 ~R~V~V~K~d-~gGLGISIKGGreNkMPIlISKIFkGl---AADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk 160 (506)
T KOG3551|consen 85 ERRVRVVKQD-AGGLGISIKGGRENKMPILISKIFKGL---AADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK 160 (506)
T ss_pred cceeEEEEec-CCcceEEeecCcccCCceehhHhcccc---ccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence 3677777753 34555555 4 289999999984 456678899999999999999999999999999999999
Q ss_pred eEEEEEEeCCC
Q psy9827 273 KLSLTIRREVP 283 (627)
Q Consensus 273 ~v~l~V~r~~~ 283 (627)
.|.|.|.+-..
T Consensus 161 eV~levKy~RE 171 (506)
T KOG3551|consen 161 EVLLEVKYMRE 171 (506)
T ss_pred eeeeeeeeehh
Confidence 99998876443
No 63
>KOG1892|consensus
Probab=97.91 E-value=3.1e-05 Score=87.07 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=70.2
Q ss_pred CCccEEEEEeecCCCCCeeeeeC-------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827 196 EPQTLRVQLSKSRKKDDFGIILG-------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 268 (627)
Q Consensus 196 ~~~~~~V~L~k~~~~~~~gi~~~-------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~ 268 (627)
++...+|+|.|. .+-|+.|+-. -||||+.|.+| ++|+.+|.|..||.+|.|||+++-|.+.+.+..+|.
T Consensus 931 ~pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~G---gaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen 931 EPEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEG---GAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred CCceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccC---CccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence 466778888886 4455555542 28999999999 678889999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeC
Q psy9827 269 SSKEKLSLTIRRE 281 (627)
Q Consensus 269 ~~~~~v~l~V~r~ 281 (627)
+++..|+|.|...
T Consensus 1007 rtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 1007 RTGNVVHLEVAKQ 1019 (1629)
T ss_pred ccCCeEEEehhhh
Confidence 9999999999754
No 64
>KOG3606|consensus
Probab=97.89 E-value=2.8e-05 Score=76.23 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=68.3
Q ss_pred cEEEEEeecCC--CCCeeeeeC-------------CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHH
Q psy9827 199 TLRVQLSKSRK--KDDFGIILG-------------NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEA 263 (627)
Q Consensus 199 ~~~V~L~k~~~--~~~~gi~~~-------------~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~ 263 (627)
...|.|+|-.. ..||-|+.| .||||+++.+| |.|...|.|.+.|++++|||+.|.|+|++++
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpG---GLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPG---GLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCC---ccccccceeeecceeEEEcCEEeccccHHHH
Confidence 45677776543 344444443 48999999998 6777789999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEEEeCCCCC
Q psy9827 264 RKLIDSSKEKLSLTIRREVPRP 285 (627)
Q Consensus 264 ~~~l~~~~~~v~l~V~r~~~~~ 285 (627)
..+|-.....+.++|.+..++.
T Consensus 236 TDMMvANshNLIiTVkPANQRn 257 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKPANQRN 257 (358)
T ss_pred HHHHhhcccceEEEeccccccc
Confidence 9999999999999998876653
No 65
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.85 E-value=4.9e-05 Score=83.47 Aligned_cols=73 Identities=30% Similarity=0.437 Sum_probs=58.0
Q ss_pred ceeEEEEcc------------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827 61 SVGIRLTGG------------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128 (627)
Q Consensus 61 ~lG~~i~g~------------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~ 128 (627)
.+|+.+... ...|++|..|.++|||+++||++||+|++|||.++.++.+..........++.+.|++.
T Consensus 339 ~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~ 418 (428)
T TIGR02037 339 FLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLIL 418 (428)
T ss_pred ccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 478777642 12589999999999999999999999999999999987665444333356889999999
Q ss_pred eCCcc
Q psy9827 129 NRRDE 133 (627)
Q Consensus 129 r~~~~ 133 (627)
|++..
T Consensus 419 R~g~~ 423 (428)
T TIGR02037 419 RGGAT 423 (428)
T ss_pred ECCEE
Confidence 87653
No 66
>KOG1320|consensus
Probab=97.84 E-value=3.6e-05 Score=83.10 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=86.2
Q ss_pred ccccCC-CCCCCCC-------CCceeeeecccccCCCCCccccccCCCCceEEEe-ccC-----------------Ccee
Q psy9827 10 TFQKEG-SVGIRLT-------GGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITF-QKE-----------------GSVG 63 (627)
Q Consensus 10 ~~~~~~-~~~~~~~-------~g~~iGin~~ai~~~~~d~~~~~~~~~~~r~v~l-~k~-----------------g~lG 63 (627)
.|.||+ ++++.++ +|+.||+| ++.....+-.+++.|++|....+.. .+. ..+|
T Consensus 293 ~~~qtd~ai~~~nsg~~ll~~DG~~IgVn-~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~p~~~~~g 371 (473)
T KOG1320|consen 293 KINQTDAAINPGNSGGPLLNLDGEVIGVN-TRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLVPVHQYIG 371 (473)
T ss_pred eecccchhhhcccCCCcEEEecCcEeeee-eeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcccccccCC
Confidence 456777 8888877 58999999 7777777777999999996543211 000 1222
Q ss_pred EE---EEcc---------------CCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEE
Q psy9827 64 IR---LTGG---------------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHL 125 (627)
Q Consensus 64 ~~---i~g~---------------~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L 125 (627)
.. +.++ ...+++|+.|.||+++...++.+||+|++|||+++.++.|..-.......++.|.+
T Consensus 372 ~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~v 451 (473)
T KOG1320|consen 372 LPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAV 451 (473)
T ss_pred ceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEE
Confidence 21 1111 01368999999999999999999999999999999998775544333334467777
Q ss_pred EEEeCCcccc
Q psy9827 126 IVQNRRDEYE 135 (627)
Q Consensus 126 ~v~r~~~~~~ 135 (627)
..++..+...
T Consensus 452 l~~~~~e~~t 461 (473)
T KOG1320|consen 452 LDRRSAEDAT 461 (473)
T ss_pred EEecCcccee
Confidence 7776554433
No 67
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.80 E-value=0.00016 Score=77.65 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=40.6
Q ss_pred EEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827 76 VTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128 (627)
Q Consensus 76 V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~ 128 (627)
|..|.|||+|+++||++||+|++|||..+.++.+..... .+..+.++|.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l----~~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLC----ADEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHh----cCCcEEEEEE
Confidence 678999999999999999999999999999886644332 2467888886
No 68
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.80 E-value=8.3e-05 Score=60.98 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=47.7
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy9827 220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV 282 (627)
Q Consensus 220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~ 282 (627)
+++|..|.++ +++..++|++||+|++|||.++. +++++...+... +..+.+.+.|++
T Consensus 13 ~~~V~~v~~~----s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPG----SPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 5789999776 45566789999999999999999 889999998875 568889898865
No 69
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.80 E-value=0.00011 Score=61.21 Aligned_cols=59 Identities=24% Similarity=0.524 Sum_probs=49.3
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRRE 281 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~ 281 (627)
.+++|..|.++ +++..++|++||+|++|||.++.+.++.++..++.. .+..+.+.+.|+
T Consensus 13 ~~~~V~~v~~~----s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 13 GGLVITSVLPG----SPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CeEEEEEecCC----CCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 57899999876 455567999999999999999997777999988876 456889999886
No 70
>KOG3542|consensus
Probab=97.79 E-value=3.6e-05 Score=83.80 Aligned_cols=81 Identities=36% Similarity=0.604 Sum_probs=69.8
Q ss_pred CCceEEEeccC---CceeEEEEccCC--CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827 49 PDPRFITFQKE---GSVGIRLTGGNK--VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI 123 (627)
Q Consensus 49 ~~~r~v~l~k~---g~lG~~i~g~~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V 123 (627)
..+|.+.|.|. ..+-|.+.||.. .||||..|.||+.|+.+||+.||+|++|||.+..+++...|..+|... ..+
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thL 612 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THL 612 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceE
Confidence 47788888773 489999999864 579999999999999999999999999999999999999998888753 577
Q ss_pred EEEEEeC
Q psy9827 124 HLIVQNR 130 (627)
Q Consensus 124 ~L~v~r~ 130 (627)
+|+|..+
T Consensus 613 tltvKtN 619 (1283)
T KOG3542|consen 613 TLTVKTN 619 (1283)
T ss_pred EEEEecc
Confidence 8887754
No 71
>KOG3553|consensus
Probab=97.77 E-value=3e-05 Score=64.60 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=47.8
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~ 281 (627)
.||||++|..| ++|..+||+.+|.|+.|||.++.-++|+.+++.|++ ...+.+.|.|.
T Consensus 59 ~GiYvT~V~eG----sPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~ 116 (124)
T KOG3553|consen 59 KGIYVTRVSEG----SPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ 116 (124)
T ss_pred ccEEEEEeccC----ChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence 38999999887 466678999999999999999999999999999987 33445555553
No 72
>PRK08356 hypothetical protein; Provisional
Probab=97.77 E-value=0.00012 Score=71.47 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=79.3
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCCc--cc--C---------CCCCCCCHHHHHHHH------hcccccCCcee----
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDKF--SA--P---------RKFNFILWATIKDTA------MYQSSKEPGMY---- 508 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f--~~--~---------~~~~Fvs~e~f~~~i------~~~~~~~~~~Y---- 508 (627)
..|+|+||+ |+|+.+.|. ++ ... .. + ...+|++.++|+.++ ++|.. -+++|
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~-g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~-~~~~yG~~~ 82 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EK-GFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRY-LKEKYGEDI 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC-CCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHH-HHHhcCcHH
Confidence 468899998 999999994 43 211 11 1 112699998888653 44443 35666
Q ss_pred hHHhHHhCCCcE-EEecC--Cce-eccc-cCCCCceeEEEEcCCC--cccC--CCC--------CHHHHHHHHHHHHHH-
Q psy9827 509 QGKDSMYQGKDS-MYQGK--ESM-YQGK-DSMYQGKDSMYQGKDS--MYQG--KDI--------KKEVKIKLFEQSQKL- 570 (627)
Q Consensus 509 ~V~~v~~~gk~c-iLdi~--~~l-~~~~-~~~~P~~~vIFI~pps--l~~~--~~~--------~e~~~~~~~~~~~~~- 570 (627)
.++.+++..+.| .+++| ..+ .... ...... +|||.+|. +.++ +|. +.++++++.++-..+
T Consensus 83 ~~~~~~~~~~~~~~ividG~r~~~q~~~l~~~~~~--vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~ 160 (195)
T PRK08356 83 LIRLAVDKKRNCKNIAIDGVRSRGEVEAIKRMGGK--VIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLY 160 (195)
T ss_pred HHHHHHHHhccCCeEEEcCcCCHHHHHHHHhcCCE--EEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhh
Confidence 223333332111 25556 322 2100 022235 89998886 1111 222 233344443322221
Q ss_pred -HHHhcCcccEEEEC-CCHHHHHHHHHHHHHhhC
Q psy9827 571 -EKVWSHVFTGTITL-SGVDVWYRKTRELIEKQQ 602 (627)
Q Consensus 571 -e~~~~~~fd~vi~n-~~l~~~~~~l~~~i~~~~ 602 (627)
..++...+|++|+| +++++++.+|..++...+
T Consensus 161 ~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 161 HTTKLKDKADFVIVNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred hhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence 12334679999998 599999999999998753
No 73
>KOG1421|consensus
Probab=97.76 E-value=0.00038 Score=76.48 Aligned_cols=142 Identities=22% Similarity=0.336 Sum_probs=101.7
Q ss_pred EEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHH-HH-hcCCCeeEEEEEeCCcccceeeecCCCCccccccC
Q psy9827 74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL-FL-LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVN 151 (627)
Q Consensus 74 i~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~-~l-~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~ 151 (627)
.+|..|.++|||++. |++||++++||+.-+.++ .+.. .| ...|+.+.|+|+|.+.+++..+.-..-.. -..
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l~df---~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~---itp 377 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF---EALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHG---ITP 377 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceehHHH---HHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccC---CCC
Confidence 578999999999874 999999999997776443 3322 22 36789999999999988777664332222 134
Q ss_pred CeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCC
Q psy9827 152 DRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD 231 (627)
Q Consensus 152 D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~ 231 (627)
|+.+++-|..+.+.+++.+..- -+.. .|+||++=.
T Consensus 378 ~R~levcGav~hdlsyq~ar~y----------------------------------------~lP~-~GvyVa~~~---- 412 (955)
T KOG1421|consen 378 DRFLEVCGAVFHDLSYQLARLY----------------------------------------ALPV-EGVYVASPG---- 412 (955)
T ss_pred ceEEEEcceEecCCCHHHHhhc----------------------------------------cccc-CcEEEccCC----
Confidence 7888888998888887754211 0111 256766542
Q ss_pred CCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC
Q psy9827 232 NNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 271 (627)
Q Consensus 232 ~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~ 271 (627)
++....++.. |..|.+|||.++. ++..++..++...
T Consensus 413 -gsf~~~~~~y-~~ii~~vanK~tP--dLdaFidvlk~L~ 448 (955)
T KOG1421|consen 413 -GSFRHRGPRY-GQIIDSVANKPTP--DLDAFIDVLKELP 448 (955)
T ss_pred -CCccccCCcc-eEEEEeecCCcCC--CHHHHHHHHHhcc
Confidence 4555556666 9999999999999 8899999998754
No 74
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00014 Score=67.08 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=93.7
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCC--ccc-----CCCC-------CCCCHHHHHHHHhcccc-----cCCcee--
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDK--FSA-----PRKF-------NFILWATIKDTAMYQSS-----KEPGMY-- 508 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~--f~~-----~~~~-------~Fvs~e~f~~~i~~~~~-----~~~~~Y-- 508 (627)
..+.|+++||| |++|++.+....+.. |-+ .+|. -=++..+|.++-..|.| .+|-.|
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 46899999999 999999887765543 332 2331 25678899998766654 247788
Q ss_pred --hHHhHHhCCCcEEEecC-Cce-eccccCCCC-ceeEEEEcCCC-ccc----CCCCCHHHHHHHHHHHHHHHHHhcCcc
Q psy9827 509 --QGKDSMYQGKDSMYQGK-ESM-YQGKDSMYQ-GKDSMYQGKDS-MYQ----GKDIKKEVKIKLFEQSQKLEKVWSHVF 578 (627)
Q Consensus 509 --~V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P-~~~vIFI~pps-l~~----~~~~~e~~~~~~~~~~~~~e~~~~~~f 578 (627)
+|.+-+++|-++|...+ ..| ..| ..|| +.++....+|. |.+ +.|.+.+++..++.++.. .-..-+
T Consensus 84 p~eId~wl~~G~vvl~NgSRa~Lp~ar--rry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a~---~~~~~~ 158 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNGSRAVLPQAR--RRYPQLLVVCITASPEVLAQRLAERGRESREEILARLARAAR---YTAGPG 158 (192)
T ss_pred chhHHHHHhCCCEEEEeccHhhhHHHH--HhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHHhhcc---cccCCC
Confidence 99999999999999999 666 332 3444 21122333343 443 355555545555555433 222356
Q ss_pred cEE-EECC-CHHHHHHHHHHHHHhh
Q psy9827 579 TGT-ITLS-GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 579 d~v-i~n~-~l~~~~~~l~~~i~~~ 601 (627)
|.+ |.|+ .++.+.+++...+.+.
T Consensus 159 dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 159 DVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 655 5565 7999999999988754
No 75
>KOG3552|consensus
Probab=97.69 E-value=6.1e-05 Score=84.79 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=66.6
Q ss_pred cEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEE
Q psy9827 199 TLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278 (627)
Q Consensus 199 ~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V 278 (627)
+..|.+.+ ....||||+-|.+++|..|.+|++. .|.|.+||+|+.|||.++.++.++-++++++.+...|.|+|
T Consensus 56 pr~vq~~r-~~~lGFgfvagrPviVr~VT~GGps-----~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 56 PRQVQLQR-NASLGFGFVAGRPVIVRFVTEGGPS-----IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred chhhhhhc-cccccceeecCCceEEEEecCCCCc-----cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 34444444 3568999999999999999998532 47899999999999999999999999999999999999999
Q ss_pred EeC
Q psy9827 279 RRE 281 (627)
Q Consensus 279 ~r~ 281 (627)
+++
T Consensus 130 ~qP 132 (1298)
T KOG3552|consen 130 CQP 132 (1298)
T ss_pred ecc
Confidence 885
No 76
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.67 E-value=0.00014 Score=61.06 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=49.1
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy9827 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV 282 (627)
Q Consensus 218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~ 282 (627)
..|++|..|.++ +++..++|++||+|++|||.++. +..++..++... +..+.+.+.|++
T Consensus 23 ~~g~~V~~v~~~----s~a~~~gl~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 23 TKGVLVASVDPG----SPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CCEEEEEEECCC----CHHHHcCCCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 347899999876 45556789999999999999999 888888888765 678999998865
No 77
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.67 E-value=0.0001 Score=80.53 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=52.4
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
.+++|..|.++|||+++||++||+|++|||.++.++.+...... ...++.+.+++.|++..+...+
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~-~~~~~~v~l~v~R~g~~~~~~v 268 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAVK-ENPGKSMDIKVERNGETLSISL 268 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH-hCCCCceEEEEEECCEEEEEEE
Confidence 47899999999999999999999999999999988755443322 2467789999998776554443
No 78
>KOG3571|consensus
Probab=97.67 E-value=0.00015 Score=76.96 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=67.3
Q ss_pred CccEEEEEee-cCCCCCeeeee-----C-CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc
Q psy9827 197 PQTLRVQLSK-SRKKDDFGIIL-----G-NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 269 (627)
Q Consensus 197 ~~~~~V~L~k-~~~~~~~gi~~-----~-~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~ 269 (627)
...++|.|-= .-.-+|..+++ | .||||.+|.+| |+.|.+|.+.+||.||.||.+++.+|+..||+..|+.
T Consensus 248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkg---GAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE 324 (626)
T KOG3571|consen 248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKG---GAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE 324 (626)
T ss_pred eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccC---ceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence 3456666632 22224555555 2 48999999998 6889999999999999999999999999999999996
Q ss_pred ---CCCeEEEEEEeCCCCC
Q psy9827 270 ---SKEKLSLTIRREVPRP 285 (627)
Q Consensus 270 ---~~~~v~l~V~r~~~~~ 285 (627)
..+.++|+|...-++.
T Consensus 325 aV~~~gPi~ltvAk~~DP~ 343 (626)
T KOG3571|consen 325 AVSRPGPIKLTVAKCWDPN 343 (626)
T ss_pred HhccCCCeEEEEeeccCCC
Confidence 4567999997765543
No 79
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.67 E-value=0.00023 Score=58.62 Aligned_cols=58 Identities=21% Similarity=0.450 Sum_probs=47.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~ 283 (627)
.|++|..|.+++ +|.. +|++||+|++|||.++. +.+++..++.. .+..+.+.+.|++.
T Consensus 8 ~Gv~V~~V~~~s----~A~~-gL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGM----PAAG-KLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCC----chhh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 378899998773 3334 59999999999999999 88999999975 35688999988654
No 80
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.58 E-value=0.00017 Score=79.64 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=52.4
Q ss_pred CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
+++|..|.++|||+++||++||+|++|||.++.++.+...... ...++.+.+++.|++......+
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~dl~~~l~-~~~~~~v~l~v~R~g~~~~~~v 286 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLVR-DNPGKPLALEIERQGSPLSLTL 286 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH-hCCCCEEEEEEEECCEEEEEEE
Confidence 5889999999999999999999999999999988766554322 2567789999998776544433
No 81
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.48 E-value=0.00029 Score=57.93 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=43.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 282 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~ 282 (627)
.+++|..|.++ +++..++|++||+|++|||.++. ++.++...+ ..+..+.+.+.|++
T Consensus 12 ~~~~V~~V~~~----s~a~~aGl~~GD~I~~Ing~~v~--~~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 12 GLGKVTFVRDD----SPADKAGLVAGDELVAVNGWRVD--ALQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred CcEEEEEECCC----ChHHHhCCCCCCEEEEECCEEhH--HHHHHHHhc-CCCCEEEEEEEECC
Confidence 36899999876 45667889999999999999998 455443333 24568889998865
No 82
>PRK10139 serine endoprotease; Provisional
Probab=97.47 E-value=0.00027 Score=77.95 Aligned_cols=61 Identities=30% Similarity=0.369 Sum_probs=50.1
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~ 134 (627)
.|++|..|.++|||+++||++||+|++|||.++.++.+... .+...+..+.|++.|++..+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~--~l~~~~~~v~l~v~R~g~~~ 450 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRK--VLAAKPAIIALQIVRGNESI 450 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhCCCeEEEEEEECCEEE
Confidence 47999999999999999999999999999999998765443 33333478999999876543
No 83
>KOG4371|consensus
Probab=97.45 E-value=0.00048 Score=78.78 Aligned_cols=168 Identities=23% Similarity=0.375 Sum_probs=111.6
Q ss_pred CCceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceee
Q psy9827 59 EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138 (627)
Q Consensus 59 ~g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v 138 (627)
.|.||..++.... .+.++...-.+.-..-.|+.||.++.+||+.+++.-+.+++.+++..++.|.|.|+|.+..+....
T Consensus 1157 ~~~l~~~~a~~~~-~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~ 1235 (1332)
T KOG4371|consen 1157 EGSLGVQIASLSG-RVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQH 1235 (1332)
T ss_pred CCCCCceeccCcc-ceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccch
Confidence 4789999887522 244444333222223349999999999999999999999999999999999999998776543211
Q ss_pred ecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeee-
Q psy9827 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL- 217 (627)
Q Consensus 139 ~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~- 217 (627)
- ++...+... -+.+.|.+. ...++|+..
T Consensus 1236 ~-------------------------~s~~~~~~~-------------------------l~~~~~~~~-p~~~~~~~~~ 1264 (1332)
T KOG4371|consen 1236 H-------------------------ASSTSASAP-------------------------LISVMLLKK-PMATLGLSLA 1264 (1332)
T ss_pred h-------------------------hhhhcccch-------------------------hhhheeeec-cccccccccc
Confidence 0 000000000 011222222 122333333
Q ss_pred ----CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy9827 218 ----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281 (627)
Q Consensus 218 ----~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~ 281 (627)
.+|+++..+... ..|...+.+++||.+...+|+++.+.+.......++-.-+.+.+.+.|.
T Consensus 1265 ~~~~s~~~~~~~~~~~---~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1265 KRTMSDGIFIRNIAQD---SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ccCcCCceeeeccccc---ccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 258899888765 2344568999999999999999999988887777776667777777664
No 84
>PRK04040 adenylate kinase; Provisional
Probab=97.40 E-value=0.0021 Score=62.41 Aligned_cols=142 Identities=6% Similarity=0.021 Sum_probs=78.4
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCCccc----------CCC-CCCCCHHHHHHHHhcccccCCcee--hHHhHH--hC
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDKFSA----------PRK-FNFILWATIKDTAMYQSSKEPGMY--QGKDSM--YQ 516 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~----------~~~-~~Fvs~e~f~~~i~~~~~~~~~~Y--~V~~v~--~~ 516 (627)
+-|+|.|++ |+|+.++|.+..+..|.. +.. ....++++|.++-. ..+ ..+- +.+.+. ..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~-~~~--~~~~~~a~~~i~~~~~ 79 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPP-EEQ--KELQREAAERIAEMAG 79 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCCh-hhh--HHHHHHHHHHHHHhhc
Confidence 457888887 999999998887511211 011 11224444443210 000 0011 222222 34
Q ss_pred CCcEEEecC----------Cce-eccccCCCCceeEEEEcCCC--cccC------CCC--CHHHHHHHHHHHHHHHHHhc
Q psy9827 517 GKDSMYQGK----------ESM-YQGKDSMYQGKDSMYQGKDS--MYQG------KDI--KKEVKIKLFEQSQKLEKVWS 575 (627)
Q Consensus 517 gk~ciLdi~----------~~l-~~~~~~~~P~~~vIFI~pps--l~~~------~~~--~e~~~~~~~~~~~~~e~~~~ 575 (627)
++.+|+|-. ..+ ..--..+.|-.+++|..||+ ++.+ .|. +++..+..++.+......|+
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a 159 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYA 159 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666888875 112 00002567744477777777 2222 132 34445666655555444444
Q ss_pred ---CcccEEEECCC--HHHHHHHHHHHHH
Q psy9827 576 ---HVFTGTITLSG--VDVWYRKTRELIE 599 (627)
Q Consensus 576 ---~~fd~vi~n~~--l~~~~~~l~~~i~ 599 (627)
+.|+++|+|++ +++|+++|.++|.
T Consensus 160 ~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 160 VLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred HhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 45999999999 9999999999873
No 85
>PRK10942 serine endoprotease; Provisional
Probab=97.36 E-value=0.00046 Score=76.49 Aligned_cols=60 Identities=32% Similarity=0.475 Sum_probs=50.1
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~ 133 (627)
.|++|..|.++|+|+++||++||+|++|||.++.++..... .+...+..+.|+|.|++..
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~--~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRK--ILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhCCCeEEEEEEECCEE
Confidence 47999999999999999999999999999999998755443 4444457899999987654
No 86
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.29 E-value=0.0018 Score=54.27 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=46.4
Q ss_pred CceeEEEEccCCCCEEEEEeCCC--------ChhhhcC--CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827 60 GSVGIRLTGGNKVGIFVTAVQPG--------SPASLQG--LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129 (627)
Q Consensus 60 g~lG~~i~g~~~~gi~V~~V~~g--------spA~~aG--L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r 129 (627)
|.||..+.-. ..+..|..|.+| ||-.+.| +++||.|++|||+++..-... ...+..+.+..|.|+|.+
T Consensus 1 G~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~-~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 1 GLLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANP-YRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp -B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-H-HHHHHTTTTSEEEEEEE-
T ss_pred CccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCH-HHHhcccCCCEEEEEEec
Confidence 3567666554 346788999886 7888888 779999999999999876542 234455788999999997
Q ss_pred CCc
Q psy9827 130 RRD 132 (627)
Q Consensus 130 ~~~ 132 (627)
...
T Consensus 79 ~~~ 81 (88)
T PF14685_consen 79 KPG 81 (88)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 87
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.27 E-value=0.0013 Score=70.29 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=54.6
Q ss_pred ceeEEEEccCCCCEEEEEeC--------CCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHh-cCCCeeEEEEEeCC
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQ--------PGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQNRR 131 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~--------~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~-~~g~~V~L~v~r~~ 131 (627)
.+|+.+.. .|++|.... .+|||+++||++||.|++|||.++.++.+.. ..+. ..+..+.|++.|+.
T Consensus 97 ~iGI~l~t---~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL~--~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 97 SIGVKLNT---KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDLA--NLINKAGGEKLTLTIERGG 171 (402)
T ss_pred EEEEEEec---CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHhCCCCeEEEEEEECC
Confidence 68887764 378875542 3699999999999999999999999886654 3333 34789999999877
Q ss_pred cccceee
Q psy9827 132 DEYEHVV 138 (627)
Q Consensus 132 ~~~~~~v 138 (627)
......+
T Consensus 172 e~~tv~V 178 (402)
T TIGR02860 172 KIIETVI 178 (402)
T ss_pred EEEEEEE
Confidence 6554444
No 88
>KOG0609|consensus
Probab=97.20 E-value=0.00091 Score=72.33 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=69.9
Q ss_pred ceEEEeccC-C-ceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEE
Q psy9827 51 PRFITFQKE-G-SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127 (627)
Q Consensus 51 ~r~v~l~k~-g-~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v 127 (627)
.+.+.+.+. + .+|+++.-.....++|..|..|+.|++.| |+.||.|++|||+++.+..-.+...++..+...+++.+
T Consensus 123 vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfki 202 (542)
T KOG0609|consen 123 VRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKI 202 (542)
T ss_pred eEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEE
Confidence 466777775 4 89999988655579999999999999999 99999999999999999999999999998889999988
Q ss_pred Ee
Q psy9827 128 QN 129 (627)
Q Consensus 128 ~r 129 (627)
..
T Consensus 203 iP 204 (542)
T KOG0609|consen 203 IP 204 (542)
T ss_pred cc
Confidence 73
No 89
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.16 E-value=0.0025 Score=58.37 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=49.2
Q ss_pred CceeEEEEcc-----CCCCEEEEEeCCCChhhhcCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827 60 GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131 (627)
Q Consensus 60 g~lG~~i~g~-----~~~gi~V~~V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~ 131 (627)
|.||+++.-. ...+.-|..|.|||||++|||++ .|.|+.+++..+.+.+..... .....+.++.|.|....
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l~~~-v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDLFEL-VEANENKPLQLYVYNSK 102 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHHHHH-HHHTTTS-EEEEEEETT
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHHHHH-HHHcCCCcEEEEEEECC
Confidence 4689888764 24578899999999999999998 699999999999876655432 33466789999987543
No 90
>KOG3651|consensus
Probab=97.15 E-value=0.0015 Score=65.22 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=62.1
Q ss_pred EEEEeecCCCCCeeeeeCC------cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827 201 RVQLSKSRKKDDFGIILGN------KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 274 (627)
Q Consensus 201 ~V~L~k~~~~~~~gi~~~~------gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 274 (627)
+|+|.|... .-.||.+|+ .+||-.|..+ .+|+..|.++.||.|++|||.++.|.+--++.++++-+.+.|
T Consensus 7 ~v~ltKD~~-nliGISIGGGapyCPClYiVQvFD~---tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV 82 (429)
T KOG3651|consen 7 TVELTKDEK-NLIGISIGGGAPYCPCLYIVQVFDK---TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEV 82 (429)
T ss_pred cEEEeeccc-cceeEEecCCCCcCCeEEEEEeccC---CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccce
Confidence 566777543 335666653 4899999887 467889999999999999999999999999999999999988
Q ss_pred EEEEEe
Q psy9827 275 SLTIRR 280 (627)
Q Consensus 275 ~l~V~r 280 (627)
.+..-.
T Consensus 83 ~IhyNK 88 (429)
T KOG3651|consen 83 KIHYNK 88 (429)
T ss_pred EEEehh
Confidence 887643
No 91
>KOG3129|consensus
Probab=97.08 E-value=0.002 Score=61.45 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=53.7
Q ss_pred CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHH--HhcCCCeeEEEEEeCCcccceeeecC
Q psy9827 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLF--LLSLQDQIHLIVQNRRDEYEHVVASQ 141 (627)
Q Consensus 73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~--l~~~g~~V~L~v~r~~~~~~~~v~~~ 141 (627)
-++|.+|.|+|||+.+||+.||.|+.+..+.-.+...++.... ....+..+.++|.|.+......+++.
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~ 210 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPK 210 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcc
Confidence 4789999999999999999999999998887776664443333 33567889999998877666555443
No 92
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.01 E-value=0.0018 Score=68.71 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=50.8
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~ 283 (627)
.+++|..|.++ ++|..+||++||+|++|||.++.+++..++...+.. .+..+.|++.|++.
T Consensus 62 ~~~~V~~V~~~----spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 62 GEIVIVSPFEG----SPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred CEEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 46899999876 466678899999999999999998777888888865 56689999998753
No 93
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=96.96 E-value=0.0016 Score=66.19 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=50.6
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR 284 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~ 284 (627)
.|+.|..+.++ +++..+||++||+|++|||+++. +.+++..++.+. +..++|+|.|++..
T Consensus 191 ~G~~v~~v~~~----s~a~~aGLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDP----SLFYKSGLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCC----CHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 37788888665 56778999999999999999999 899999999873 45899999998653
No 94
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=96.88 E-value=0.0026 Score=68.91 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=50.2
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Q psy9827 220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV 282 (627)
Q Consensus 220 gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~ 282 (627)
+++|..|.++ ++|..+||++||+|++|||+++.+++..++..+|+. .+..+.|+|.|++
T Consensus 103 g~~V~~V~~~----SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPG----GPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCC----ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 6889999876 456677899999999999999998888898888875 4568999998864
No 95
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.84 E-value=0.0017 Score=70.25 Aligned_cols=71 Identities=30% Similarity=0.395 Sum_probs=53.3
Q ss_pred CceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeee
Q psy9827 60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139 (627)
Q Consensus 60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~ 139 (627)
.+||+.+... ..+..|+.|.+||||++|||.+||.|++|||.+-+ ..-.+++..+.+.+.+.+...+..++
T Consensus 451 ~~LGl~v~~~-~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~--------l~~~~~~d~i~v~~~~~~~L~e~~v~ 521 (558)
T COG3975 451 YYLGLKVKSE-GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ--------LDRYKVNDKIQVHVFREGRLREFLVK 521 (558)
T ss_pred cccceEeccc-CCeeEEEecCCCChhHhccCCCccEEEEEcCcccc--------ccccccccceEEEEccCCceEEeecc
Confidence 3788887655 34689999999999999999999999999999111 11125678888888876665554443
No 96
>KOG1320|consensus
Probab=96.80 E-value=0.018 Score=62.67 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=46.8
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC--eEEEEEEeCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREV 282 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~--~v~l~V~r~~ 282 (627)
.+++|..|.+++ .+..+++.+||+|+.|||.++. +..++..+++.+.. .+.+...+..
T Consensus 398 q~v~is~Vlp~~----~~~~~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 398 QLVLVSQVLPGS----INGGYGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred eEEEEEEeccCC----CcccccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCc
Confidence 478999999874 4456889999999999999999 78999999998764 6666665543
No 97
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.79 E-value=0.0026 Score=67.92 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=53.2
Q ss_pred eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827 213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 283 (627)
Q Consensus 213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~ 283 (627)
||+....|++|..|.++ +++..++|++||+|++|||+++. +.+++...+.. .++.+.|+|.|++.
T Consensus 272 lgl~~~~Gv~V~~V~~~----spA~~aGL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 272 LGLPDLRGIVITGVDPN----GPAARAGILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred cCCCccccceEeecCCC----ChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 44443468999999876 45667899999999999999999 89999888875 46789999998653
No 98
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.006 Score=66.22 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=51.2
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE 281 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~ 281 (627)
.++.|.++.++ ++|..++|++||+|+.|||.++.+++.++++..|+.. +..|+|++.|.
T Consensus 112 ~~~~V~s~~~~----~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 112 GGVKVVSPIDG----SPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCcEEEecCCC----ChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 46788888776 4666677999999999999999999999999999975 55899999997
No 99
>PRK10898 serine endoprotease; Provisional
Probab=96.49 E-value=0.0069 Score=64.74 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=50.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy9827 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 283 (627)
Q Consensus 218 ~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~ 283 (627)
..|++|..|.++ +++..++|++||+|++|||+++. +.+++...+.. .++.+.|.+.|++.
T Consensus 278 ~~Gv~V~~V~~~----spA~~aGL~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 278 LQGIVVNEVSPD----GPAAKAGIQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CCeEEEEEECCC----ChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 368999999876 46667899999999999999999 88888888765 45689999998653
No 100
>KOG3542|consensus
Probab=96.48 E-value=0.0032 Score=69.11 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=58.5
Q ss_pred CCCccEEEEEeecC--CCCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHH
Q psy9827 195 PEPQTLRVQLSKSR--KKDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 268 (627)
Q Consensus 195 ~~~~~~~V~L~k~~--~~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~ 268 (627)
.......|.|.|.. .+..|.+.+| .||||..|.|| +.|+..||+.||.|++|||++..+.+...+..+|+
T Consensus 532 aKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pg----skAa~~GlKRgDqilEVNgQnfenis~~KA~eiLr 607 (1283)
T KOG3542|consen 532 AKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPG----SKAAREGLKRGDQILEVNGQNFENISAKKAEEILR 607 (1283)
T ss_pred hcccceeEEEecccccCCceeEeccCccccceeEEeeecCC----chHHHhhhhhhhhhhhccccchhhhhHHHHHHHhc
Confidence 34456788888854 3445666665 48999999987 45567789999999999999999999999999998
Q ss_pred cCC
Q psy9827 269 SSK 271 (627)
Q Consensus 269 ~~~ 271 (627)
+..
T Consensus 608 nnt 610 (1283)
T KOG3542|consen 608 NNT 610 (1283)
T ss_pred CCc
Confidence 754
No 101
>KOG0606|consensus
Probab=96.44 E-value=0.0059 Score=71.30 Aligned_cols=75 Identities=31% Similarity=0.402 Sum_probs=63.2
Q ss_pred EEeccCC-ceeEEEEcc----CCC-----CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCee
Q psy9827 54 ITFQKEG-SVGIRLTGG----NKV-----GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQI 123 (627)
Q Consensus 54 v~l~k~g-~lG~~i~g~----~~~-----gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V 123 (627)
|.+.+.+ +|||++... ++. ...|..|.+||||..+|++.||.|+.|||..+.+..|.+++.++...+..|
T Consensus 630 I~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v 709 (1205)
T KOG0606|consen 630 ITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKV 709 (1205)
T ss_pred eeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCee
Confidence 5556655 799877652 122 367899999999999999999999999999999999999999999889999
Q ss_pred EEEEE
Q psy9827 124 HLIVQ 128 (627)
Q Consensus 124 ~L~v~ 128 (627)
++.+.
T Consensus 710 ~~~tt 714 (1205)
T KOG0606|consen 710 TLRTT 714 (1205)
T ss_pred EEEee
Confidence 88775
No 102
>KOG3938|consensus
Probab=96.44 E-value=0.0053 Score=60.51 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=63.6
Q ss_pred EEeccC-CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeeEEEEEe
Q psy9827 54 ITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLL--SLQDQIHLIVQN 129 (627)
Q Consensus 54 v~l~k~-g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~--~~g~~V~L~v~r 129 (627)
+.+.|. ..||++|......-.||..|.+||.-.+-. +++||.|-+|||.++.++-|.+++.+|+ ..+...+|.+..
T Consensus 130 v~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie 209 (334)
T KOG3938|consen 130 VEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE 209 (334)
T ss_pred EEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence 334444 378998887655568999999999998876 9999999999999999999999999998 556777777664
Q ss_pred CC
Q psy9827 130 RR 131 (627)
Q Consensus 130 ~~ 131 (627)
.+
T Consensus 210 Pk 211 (334)
T KOG3938|consen 210 PK 211 (334)
T ss_pred cc
Confidence 43
No 103
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.43 E-value=0.0069 Score=69.37 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=48.3
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCc-----eeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN-----HPTDGMSVKEARKLIDSS-KEKLSLTIRRE 281 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg-----~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~ 281 (627)
.+++|.+|.+|+ +|+..++|++||+|++||+ .++.+++.++++.+|+.. +..|.|+|.|+
T Consensus 255 ~~~~V~~vipGs---PA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 255 DYTVINSLVAGG---PAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CeEEEEEccCCC---hHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 468899999884 3444459999999999994 366788999999999874 55899999884
No 104
>KOG4407|consensus
Probab=96.37 E-value=0.0034 Score=73.42 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=97.3
Q ss_pred ccCCCCceEEEeccC-CceeEEEEccC---------------------------CCCEEEEEeCCCChhhhcCCCCCCEE
Q psy9827 45 FFVEPDPRFITFQKE-GSVGIRLTGGN---------------------------KVGIFVTAVQPGSPASLQGLQPGDKI 96 (627)
Q Consensus 45 ~~~~~~~r~v~l~k~-g~lG~~i~g~~---------------------------~~gi~V~~V~~gspA~~aGL~~GD~I 96 (627)
.|.++.+.+|.+++. .||||+|.-.- ...+++-.+..++++..+|+..||.|
T Consensus 41 a~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v 120 (1973)
T KOG4407|consen 41 ASSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGV 120 (1973)
T ss_pred hccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccce
Confidence 456788888888876 59999987530 01256666777888888888888888
Q ss_pred EEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCCeeeccCCeecCcCChHHHHHHHhh
Q psy9827 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRD 176 (627)
Q Consensus 97 l~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~i~~vng~~l~~~~~~~~~~~l~~ 176 (627)
..|||..+.+.+. .....++..
T Consensus 121 ~~itG~e~~~~TS-~~~~~vk~~--------------------------------------------------------- 142 (1973)
T KOG4407|consen 121 AGITGLEPTSPTS-LPPYQVKAM--------------------------------------------------------- 142 (1973)
T ss_pred eeecccccCCCcc-ccHHHHhhh---------------------------------------------------------
Confidence 8888888766652 111111111
Q ss_pred cCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCC
Q psy9827 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD 256 (627)
Q Consensus 177 sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~ 256 (627)
.-+||.+|.+.+ ++--+.|+.||.++.||+.++.
T Consensus 143 ------------------------------------------eT~~~~eV~~n~----~~~~a~LQ~~~~V~~v~~q~~A 176 (1973)
T KOG4407|consen 143 ------------------------------------------ETIFIKEVQANG----PAHYANLQTGDRVLMVNNQPIA 176 (1973)
T ss_pred ------------------------------------------hhhhhhhhccCC----hhHHHhhhccceeEEeecCccc
Confidence 123566676552 3445789999999999999999
Q ss_pred CCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827 257 GMSVKEARKLIDSSKEKLSLTIRREV 282 (627)
Q Consensus 257 ~~s~~e~~~~l~~~~~~v~l~V~r~~ 282 (627)
++-..+++.++++....+++.|.+-.
T Consensus 177 ~i~~s~~~S~~~qt~~~~~~~~~P~~ 202 (1973)
T KOG4407|consen 177 GIAYSTIVSMIKQTPAVLTLHVVPKE 202 (1973)
T ss_pred chhhhhhhhhhccCCCCCCceecccc
Confidence 99999999999999988888887643
No 105
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.36 E-value=0.008 Score=57.47 Aligned_cols=140 Identities=9% Similarity=-0.105 Sum_probs=75.2
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCC-CCC-CHHHHHH---HHhccc----c---cCCcee-----hHHhH
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKF-NFI-LWATIKD---TAMYQS----S---KEPGMY-----QGKDS 513 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~-~Fv-s~e~f~~---~i~~~~----~---~~~~~Y-----~V~~v 513 (627)
.+.|+|.||+ |+|+.+.|.+..+..|..--.+ +|. ....+.. .+.... . ..++.| .+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 4679999999 9999999998876554432222 211 1111111 111111 0 112455 78888
Q ss_pred HhCCCcEEEecC-C-ce-ecc-ccCC--CCceeEEEEcCCC--cccC--CCCCHHHHHHHHHHHHHHHHHh-cCcccEEE
Q psy9827 514 MYQGKDSMYQGK-E-SM-YQG-KDSM--YQGKDSMYQGKDS--MYQG--KDIKKEVKIKLFEQSQKLEKVW-SHVFTGTI 582 (627)
Q Consensus 514 ~~~gk~ciLdi~-~-~l-~~~-~~~~--~P~~~vIFI~pps--l~~~--~~~~e~~~~~~~~~~~~~e~~~-~~~fd~vi 582 (627)
+++|++||+|.. . .- ... -..+ .|+ ..||+.+|. +.++ +|... ...+... +. +..+ ...||++|
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~-~~v~l~~~~~~l~~R~~~R~~~--~~~~~~~-~~-~~~~~~~~~dl~i 156 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQDCWRSFVGLDV-LWVGVRCPGEVAEGRETARGDR--VPGQARK-QA-RVVHAGVEYDLEV 156 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHHHHHHhcCCCE-EEEEEECCHHHHHHHHHhcCCc--cchHHHH-HH-HHhcCCCcceEEE
Confidence 999999999976 2 21 100 0012 232 268888775 2222 34321 1122221 11 2222 35689988
Q ss_pred ECC--CHHHHHHHHHHHH
Q psy9827 583 TLS--GVDVWYRKTRELI 598 (627)
Q Consensus 583 ~n~--~l~~~~~~l~~~i 598 (627)
.++ +.+++.++|.+.|
T Consensus 157 Dts~~s~~e~a~~i~~~l 174 (175)
T cd00227 157 DTTHKTPIECARAIAARV 174 (175)
T ss_pred ECCCCCHHHHHHHHHHhc
Confidence 876 6888888887654
No 106
>KOG3605|consensus
Probab=96.34 E-value=0.0032 Score=69.09 Aligned_cols=59 Identities=22% Similarity=0.445 Sum_probs=51.2
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeE
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIH 124 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~ 124 (627)
.|||+++.| +|.++..|+.|++.|+++|.+|++|||.+|....|+..+.+|...=..|.
T Consensus 750 QLGFSVQNG-----iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIh 808 (829)
T KOG3605|consen 750 QLGFSVQNG-----IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIH 808 (829)
T ss_pred hccceeeCc-----EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhh
Confidence 699999866 47788999999999999999999999999999999999998885533443
No 107
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.32 E-value=0.012 Score=63.08 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=56.1
Q ss_pred CCCCeeeeeC-CcEEEEEecc----CCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Q psy9827 209 KKDDFGIILG-NKIFVKEVTH----RLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV 282 (627)
Q Consensus 209 ~~~~~gi~~~-~gi~V~~V~~----g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~~ 282 (627)
.+..+|+.+. .|++|..... ++...++|+.++|++||+|++|||.++. +.+|+.++++.. +..+.|.|.|++
T Consensus 94 gG~~iGI~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 94 GGQSIGVKLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred CCEEEEEEEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence 3556777774 6888755432 1122356777899999999999999999 899999999875 468999999976
Q ss_pred C
Q psy9827 283 P 283 (627)
Q Consensus 283 ~ 283 (627)
.
T Consensus 172 e 172 (402)
T TIGR02860 172 K 172 (402)
T ss_pred E
Confidence 4
No 108
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.20 E-value=0.016 Score=48.58 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=38.4
Q ss_pred CcEEEEEeccCCCCCCCCCC------CCCCCCCEEEEeCceeCCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGT------HQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVP 283 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~------~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~-~~~~v~l~V~r~~~ 283 (627)
.+..|.+|.+|-++...+++ -.+++||.|++|||+++. .......+|.+ ++..+.|+|.+...
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence 45678899887443332221 367899999999999998 66677788886 55689999988653
No 109
>KOG1421|consensus
Probab=96.15 E-value=0.056 Score=60.12 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=87.8
Q ss_pred EEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcccceeeecCCCCccccccCCe
Q psy9827 74 IFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDR 153 (627)
Q Consensus 74 i~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~v~~~~~~~~~l~~~D~ 153 (627)
.+|+.|.++-+- . |..||+|++|||+.+..+.+++-.. .+...+.|.+.+.+..++.-+.. ..++
T Consensus 773 ~~ishv~~~~~k--i-l~~gdiilsvngk~itr~~dl~d~~-------eid~~ilrdg~~~~ikipt~p~~-----et~r 837 (955)
T KOG1421|consen 773 YVISHVRPLLHK--I-LGVGDIILSVNGKMITRLSDLHDFE-------EIDAVILRDGIEMEIKIPTYPEY-----ETSR 837 (955)
T ss_pred EEEEeeccCccc--c-cccccEEEEecCeEEeeehhhhhhh-------hhheeeeecCcEEEEEecccccc-----ccce
Confidence 578888887543 3 9999999999999999998877432 55566666665554444322111 1111
Q ss_pred eeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCCCCC
Q psy9827 154 IMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNN 233 (627)
Q Consensus 154 i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~~~~ 233 (627)
.+---|..+. .+|..+.+.+-. +..|+||+..-.|+
T Consensus 838 ~vi~~gailq-~ph~av~~q~ed----------------------------------------lp~gvyvt~rg~gs--- 873 (955)
T KOG1421|consen 838 AVIWMGAILQ-PPHSAVFEQVED----------------------------------------LPEGVYVTSRGYGS--- 873 (955)
T ss_pred EEEEEecccc-CchHHHHHHHhc----------------------------------------cCCceEEeecccCC---
Confidence 1111111111 122221111110 11478898887663
Q ss_pred CCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEE
Q psy9827 234 ASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278 (627)
Q Consensus 234 ~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V 278 (627)
+|-. .|+.-.-|.+|||+.+. +.++++.++......-...|
T Consensus 874 -palq-~l~aa~fitavng~~t~--~lddf~~~~~~ipdnsyv~v 914 (955)
T KOG1421|consen 874 -PALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNSYVQV 914 (955)
T ss_pred -hhHh-hcchheeEEEecccccC--cHHHHHHHHhhCCCCceEEE
Confidence 4433 79999999999999998 99999999998765444444
No 110
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.07 E-value=0.024 Score=57.73 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=45.7
Q ss_pred EeCCCChh---hhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccccee
Q psy9827 78 AVQPGSPA---SLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137 (627)
Q Consensus 78 ~V~~gspA---~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~~~~ 137 (627)
.|.||..+ .++||++||.+++|||.++.+..+.............++|+|.|++..+...
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~ 272 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDIS 272 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEE
Confidence 45677543 5799999999999999999877655544444466789999999988765544
No 111
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.93 E-value=0.0092 Score=60.68 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=46.2
Q ss_pred EeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCCC
Q psy9827 225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRP 285 (627)
Q Consensus 225 ~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~~ 285 (627)
+|.|| .+...-...||++||++++|||.++. +.+++.++++.. ...++|+|.|++...
T Consensus 210 rl~Pg-kd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 210 AVKPG-ADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred EECCC-CcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 45565 22234556899999999999999999 889999999874 458999999988754
No 112
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=95.85 E-value=0.0015 Score=49.84 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=34.3
Q ss_pred eeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccc-cCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827 315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSL-SQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR 384 (627)
Q Consensus 315 yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~-~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~ 384 (627)
|+||.++|.+ ..+.++.|.+||+++| + .+++. .||.+.. + ...|+||+...
T Consensus 1 ~~~a~~d~~~--------~~~~~Ls~~~Gd~i~v-~~~~~~~----~ww~~~~---~---g~~G~~P~~~v 52 (55)
T PF07653_consen 1 YYRAIFDYVA--------EDPDELSFKKGDVIEV-LGEKDDD----GWWLGEN---N---GRRGWFPSSYV 52 (55)
T ss_dssp EEEESSSBES--------SSTTB-EB-TTEEEEE-EEEECST----SEEEEEE---T---TEEEEEEGGGE
T ss_pred CEEEeEEECC--------CCCCceEEecCCEEEE-EEeecCC----CEEEEEE---C---CcEEEEcHHHE
Confidence 5677777722 1234567779999999 6 44443 8999976 2 37799999764
No 113
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=95.69 E-value=0.0034 Score=46.33 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccC
Q psy9827 336 PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPN 381 (627)
Q Consensus 336 ~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs 381 (627)
.++.|..||++.| +.+.|. .||.++.... .+.|+||+
T Consensus 12 ~eLs~~~Gd~i~v-~~~~~~----~Ww~~~~~~~----~~~G~vP~ 48 (48)
T PF00018_consen 12 DELSFKKGDIIEV-LEKSDD----GWWKVRNEST----GKEGWVPS 48 (48)
T ss_dssp TBSEB-TTEEEEE-EEESSS----SEEEEEETTT----TEEEEEEG
T ss_pred CEEeEECCCEEEE-EEecCC----CEEEEEECCC----CcEEEeeC
Confidence 3556779999999 666664 7999988753 48999996
No 114
>KOG3532|consensus
Probab=95.34 E-value=0.051 Score=60.20 Aligned_cols=67 Identities=21% Similarity=0.439 Sum_probs=52.9
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r 129 (627)
.+|+..-......+-|..|.++++|.++.+++||.+++|||+++.. ..++...++.....+...+.+
T Consensus 387 ~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 387 PIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 6787665554566889999999999999999999999999999974 456666777665566666554
No 115
>KOG4792|consensus
Probab=95.30 E-value=0.0084 Score=57.81 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.9
Q ss_pred CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHHH
Q psy9827 312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEEL 388 (627)
Q Consensus 312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~~ 388 (627)
...|||++|++ ...+.. ++-|.+|+||.| +.+..+ .||.|+... ...|+||-..-+..+
T Consensus 123 ~~~~vr~~fdF---~G~dee-----DLPFkkGeiL~I-~~K~ee----qWW~Arns~-----Gk~GmIPvpYVe~~~ 181 (293)
T KOG4792|consen 123 EAEYVRALFDF---NGNDEE-----DLPFKKGEILRI-RDKPEE----QWWNARNSE-----GKRGMIPVPYVEKYR 181 (293)
T ss_pred hhhheeeeecc---CCCccc-----cCCcccCcEEEE-ecCcHH----HhhhhhccC-----CcccceechHHHhhh
Confidence 36899999999 332222 234669999999 776665 799997532 589999999776654
No 116
>PF12812 PDZ_1: PDZ-like domain
Probab=94.99 E-value=0.14 Score=42.04 Aligned_cols=74 Identities=18% Similarity=0.312 Sum_probs=54.0
Q ss_pred CCeeeccCCeecCcCChHHHHHHHhhcCCeEEEEEeecccCCCCCCCccEEEEEeecCCCCCeeeeeCCcEEEEEeccCC
Q psy9827 151 NDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRL 230 (627)
Q Consensus 151 ~D~i~~vng~~l~~~~~~~~~~~l~~sg~~v~l~v~r~~~~p~~~~~~~~~V~L~k~~~~~~~gi~~~~gi~V~~V~~g~ 230 (627)
.++.+.+.|..+.+++++.+.+..-.. + ++|+ ....
T Consensus 4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~~----------------------------------------~-gv~v-~~~~-- 39 (78)
T PF12812_consen 4 PSRFVEVCGAVFHDLSYQQARQYGIPV----------------------------------------G-GVYV-AVSG-- 39 (78)
T ss_pred CCEEEEEcCeecccCCHHHHHHhCCCC----------------------------------------C-EEEE-EecC--
Confidence 367888899999999998765542211 1 2233 3322
Q ss_pred CCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCC
Q psy9827 231 DNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 272 (627)
Q Consensus 231 ~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~ 272 (627)
++.+..+++..|-+|.+|||+++. +++++.+.+++.++
T Consensus 40 --g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 40 --GSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred --CChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 455556679999999999999999 99999999987653
No 117
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.96 E-value=0.063 Score=54.86 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=50.8
Q ss_pred CCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeC
Q psy9827 72 VGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNR 130 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~ 130 (627)
.|++|..|..++||. | |..||.|++|||.++.+.........-+..|+.|++.+.|.
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEec
Confidence 489999999999985 6 99999999999999998877777777779999999999973
No 118
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=94.96 E-value=0.026 Score=60.86 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=40.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEE-eCC
Q psy9827 223 VKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR-REV 282 (627)
Q Consensus 223 V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~-r~~ 282 (627)
|..|.++ ++|..+||++||+|++|||+.+. ++.++...+. ...+.+.|. |++
T Consensus 2 I~~V~pg----SpAe~AGLe~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdG 54 (433)
T TIGR03279 2 ISAVLPG----SIAEELGFEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANG 54 (433)
T ss_pred cCCcCCC----CHHHHcCCCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCC
Confidence 4566665 56778899999999999999999 8889877774 356888886 443
No 119
>KOG3834|consensus
Probab=94.85 E-value=0.26 Score=52.31 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=47.1
Q ss_pred ccCCCCEEEEEeCCCChhhhcCCCC-CCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827 68 GGNKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129 (627)
Q Consensus 68 g~~~~gi~V~~V~~gspA~~aGL~~-GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r 129 (627)
++...|--|.+|+.+|+|+++||.+ =|.|++|||..+..-+ +....+++..-+.|.|+|..
T Consensus 11 ~ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dn-d~Lk~llk~~sekVkltv~n 72 (462)
T KOG3834|consen 11 GGGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDN-DTLKALLKANSEKVKLTVYN 72 (462)
T ss_pred cCCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCch-HHHHHHHHhcccceEEEEEe
Confidence 4445577789999999999999776 5999999999997653 44556666666668888873
No 120
>KOG3938|consensus
Probab=94.81 E-value=0.057 Score=53.48 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=60.6
Q ss_pred EEEEEeecCCCCCeeeeeC--CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEE
Q psy9827 200 LRVQLSKSRKKDDFGIILG--NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLS 275 (627)
Q Consensus 200 ~~V~L~k~~~~~~~gi~~~--~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~ 275 (627)
..|.++|+....|+.|+.. .-.||++|.+| +...+-..+++||.|-+|||+++-|+.|-|+..+|+.. +...+
T Consensus 128 kEv~v~KsedalGlTITDNG~GyAFIKrIkeg---svidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ft 204 (334)
T KOG3938|consen 128 KEVEVVKSEDALGLTITDNGAGYAFIKRIKEG---SVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFT 204 (334)
T ss_pred eeEEEEecccccceEEeeCCcceeeeEeecCC---chhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeE
Confidence 4566677655444444442 23799999888 35555567999999999999999999999999999974 56788
Q ss_pred EEEEeCC
Q psy9827 276 LTIRREV 282 (627)
Q Consensus 276 l~V~r~~ 282 (627)
|.+.-+.
T Consensus 205 lrLiePk 211 (334)
T KOG3938|consen 205 LRLIEPK 211 (334)
T ss_pred EEeeccc
Confidence 8776653
No 121
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.74 E-value=0.12 Score=50.78 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=48.1
Q ss_pred EeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCCCCC
Q psy9827 225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPRPT 286 (627)
Q Consensus 225 ~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~~~~ 286 (627)
++.|| .++++-...||+.||+.++||+.+++ +.+++..+|+.. -..+.|+|.|++.+..
T Consensus 210 r~~pg-kd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rhd 270 (275)
T COG3031 210 RFEPG-KDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRHD 270 (275)
T ss_pred EecCC-CCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccce
Confidence 34555 44566667899999999999999999 999999999974 4689999999887653
No 122
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=93.91 E-value=0.021 Score=42.32 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=26.3
Q ss_pred CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
++.|..||++.| +.+.+. .||.++. + .+.|++|+..
T Consensus 12 ELs~~~Gd~i~v-~~~~~~----~W~~g~~---~---g~~G~~P~~y 47 (49)
T PF14604_consen 12 ELSFKKGDVITV-LEKSDD----GWWYGRN---T---GRTGLFPANY 47 (49)
T ss_dssp B-EB-TTEEEEE-EEESST----SEEEEEE---T---TEEEEEEGGG
T ss_pred EeeEcCCCEEEE-EEeCCC----CEEEEEE---C---CEEEEECHHh
Confidence 567889999999 555443 8999974 2 4999999864
No 123
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.71 E-value=0.14 Score=50.29 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=43.6
Q ss_pred CCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCcc
Q psy9827 80 QPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133 (627)
Q Consensus 80 ~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~ 133 (627)
.+++.-++.||+.||+.+++|+.++.+...+.....+...-..+.|+|.|++..
T Consensus 215 kd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 215 KDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred CCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCcc
Confidence 556777899999999999999999988766665555556667899999987754
No 124
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.68 E-value=0.62 Score=45.30 Aligned_cols=86 Identities=6% Similarity=0.043 Sum_probs=51.7
Q ss_pred hHHhHHhCC---CcEEEecC---CceeccccCCCCceeEEEEcCCC------cccCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy9827 509 QGKDSMYQG---KDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDS------MYQGKDIKKEVKIKLFEQSQKLEKVWSH 576 (627)
Q Consensus 509 ~V~~v~~~g---k~ciLdi~---~~l~~~~~~~~P~~~vIFI~pps------l~~~~~~~e~~~~~~~~~~~~~e~~~~~ 576 (627)
.+.+.+++. +.+++|+- +.-.. .++-. +|+|..|. +.++.+.+++++.+++.. +.-..+...
T Consensus 95 ~~~~~~~~~~~~~~vv~e~pll~e~~~~---~~~D~--vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~-Q~~~~~~~~ 168 (194)
T PRK00081 95 EILEQLQEAESSPYVVLDIPLLFENGLE---KLVDR--VLVVDAPPETQLERLMARDGLSEEEAEAIIAS-QMPREEKLA 168 (194)
T ss_pred HHHHHHHHcccCCEEEEEehHhhcCCch---hhCCe--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHH
Confidence 444444433 67888887 32111 23345 77777665 112234556656665553 222334456
Q ss_pred cccEEEECC-CHHHHHHHHHHHHHh
Q psy9827 577 VFTGTITLS-GVDVWYRKTRELIEK 600 (627)
Q Consensus 577 ~fd~vi~n~-~l~~~~~~l~~~i~~ 600 (627)
..|+||.|+ ++++.+.++..++.+
T Consensus 169 ~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 169 RADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred hCCEEEECCCCHHHHHHHHHHHHHh
Confidence 679999997 899999999998764
No 125
>KOG1738|consensus
Probab=93.67 E-value=0.097 Score=58.02 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=62.5
Q ss_pred CceeEEEEccCCCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCC
Q psy9827 60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131 (627)
Q Consensus 60 g~lG~~i~g~~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~ 131 (627)
.++|+-|...-++.++|+.+.++|||...+ |..||.+++||+..+.+|+....+..+.....-|.+++..++
T Consensus 213 eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 213 EGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred cCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence 489998887666678999999999999988 999999999999999999999999988877767777776544
No 126
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=92.66 E-value=0.39 Score=49.29 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=48.8
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHc--CCCeEEEEEEeCCCCC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPRP 285 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~--~~~~v~l~V~r~~~~~ 285 (627)
.|+++..|..++ + ..+-|+.||.|++|||+++. +.+|+...+++ .++.|++...|....+
T Consensus 130 ~gvyv~~v~~~~----~-~~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~ 191 (342)
T COG3480 130 AGVYVLSVIDNS----P-FKGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNETP 191 (342)
T ss_pred eeEEEEEccCCc----c-hhceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCCC
Confidence 378888886552 2 24679999999999999999 99999999986 5679999999855544
No 127
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.31 Score=51.99 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=53.7
Q ss_pred eeeeeCCcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy9827 213 FGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP 283 (627)
Q Consensus 213 ~gi~~~~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~--~~~v~l~V~r~~~ 283 (627)
+|+....|++|..|.++ +++..++++.||+|+++||..+. +..++...+... +..+.+.+.|++.
T Consensus 264 ~g~~~~~G~~V~~v~~~----spa~~agi~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 264 LGLPVAAGAVVLGVLPG----SPAAKAGIKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred cCCCCCCceEEEecCCC----ChHHHcCCCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCE
Confidence 55555678999999876 56777899999999999999999 888888888763 5689999999844
No 128
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=92.26 E-value=0.31 Score=49.19 Aligned_cols=85 Identities=9% Similarity=-0.007 Sum_probs=56.4
Q ss_pred CcEEEecC---Cc-eeccccCCCCceeEEEEcCCCc---c---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC--
Q psy9827 518 KDSMYQGK---ES-MYQGKDSMYQGKDSMYQGKDSM---Y---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-- 585 (627)
Q Consensus 518 k~ciLdi~---~~-l~~~~~~~~P~~~vIFI~ppsl---~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-- 585 (627)
..|++|+- +. +.. .+.-. +|||..|.- + ++...+++++++++.. +.-..+.....|+||.|+
T Consensus 118 ~~vv~evPLL~E~~~~~---~~~D~--iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~-Q~~~~ek~~~aD~VI~N~~~ 191 (244)
T PTZ00451 118 LIVVLDAPTLFETKTFT---YFVSA--SVVVSCSEERQIERLRKRNGFSKEEALQRIGS-QMPLEEKRRLADYIIENDSA 191 (244)
T ss_pred CEEEEEechhhccCchh---hcCCe--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh-CCCHHHHHHhCCEEEECCCC
Confidence 48999987 43 222 24456 888877761 1 1134466667777655 333445677899999998
Q ss_pred -CHHHHHHHHHHHHHhhC-CCCeeE
Q psy9827 586 -GVDVWYRKTRELIEKQQ-SSPVWI 608 (627)
Q Consensus 586 -~l~~~~~~l~~~i~~~~-~~~~Wv 608 (627)
++++...++.+++.... ..|.|+
T Consensus 192 g~~~~L~~~v~~~~~~~~~~~~~~~ 216 (244)
T PTZ00451 192 DDLDELRGSVCDCVAWMSRQSNKRL 216 (244)
T ss_pred CCHHHHHHHHHHHHHHHHhhCChHH
Confidence 89999999999987643 335543
No 129
>PRK06762 hypothetical protein; Provisional
Probab=90.92 E-value=1.4 Score=41.27 Aligned_cols=133 Identities=6% Similarity=-0.011 Sum_probs=69.4
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee------hHHhHHhCCCcEEEec
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY------QGKDSMYQGKDSMYQG 524 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y------~V~~v~~~gk~ciLdi 524 (627)
++.|+|.|++ |+|+.++|.+.++. ...+++.+.+...+..+....+.+. .++..++.|..+|+|-
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~------~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR------GTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC------CeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEch
Confidence 4678899988 99999999887632 1124455555544322111112221 4455677899999976
Q ss_pred C--Cc-----e-eccccCCCCceeEEEEcCCC---cccC-CC-----CCHHHHHHHHHHHHHHHHHhcCcccEEEECC--
Q psy9827 525 K--ES-----M-YQGKDSMYQGKDSMYQGKDS---MYQG-KD-----IKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-- 585 (627)
Q Consensus 525 ~--~~-----l-~~~~~~~~P~~~vIFI~pps---l~~~-~~-----~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-- 585 (627)
. .. + .++...-.|+ .+||+..|- ++.. .| ..++.+..+++.-.. .+.++.+|+++
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~-~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~ 149 (166)
T PRK06762 76 ILNSDRYGPMLKELIHLFRGNA-YTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDT-----LGVIGETIFTDNL 149 (166)
T ss_pred hhccHhHHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCC-----cCCCCeEEecCCC
Confidence 5 11 1 1111112352 167777773 1111 22 123323333322211 13478888766
Q ss_pred CHHHHHHHHHHHH
Q psy9827 586 GVDVWYRKTRELI 598 (627)
Q Consensus 586 ~l~~~~~~l~~~i 598 (627)
++++.++++...+
T Consensus 150 ~~~~v~~~i~~~~ 162 (166)
T PRK06762 150 SLKDIFDAILTDI 162 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 5666666666544
No 130
>PRK04182 cytidylate kinase; Provisional
Probab=90.88 E-value=3.8 Score=38.61 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=47.4
Q ss_pred HHhHHhCCCcEEEecC-CceeccccCCCCceeEEEEcCCC---cccC-C--CCCHHHHHHHHHHHHH-----HHHHh---
Q psy9827 510 GKDSMYQGKDSMYQGK-ESMYQGKDSMYQGKDSMYQGKDS---MYQG-K--DIKKEVKIKLFEQSQK-----LEKVW--- 574 (627)
Q Consensus 510 V~~v~~~gk~ciLdi~-~~l~~~~~~~~P~~~vIFI~pps---l~~~-~--~~~e~~~~~~~~~~~~-----~e~~~--- 574 (627)
+......+..||++-. .....+ ...-+ +|||..|- ++.+ . .....++.+.++.... +..-|
T Consensus 67 ~~~~~~~~~~~Vi~g~~~~~~~~--~~~~~--~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~ 142 (180)
T PRK04182 67 QLEIAEKEDNVVLEGRLAGWMAK--DYADL--KIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGID 142 (180)
T ss_pred HHHHHhcCCCEEEEEeecceEec--CCCCE--EEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334325677888754 323221 22225 78998875 1111 1 1223323333322222 22222
Q ss_pred ---cCcccEEEECC--CHHHHHHHHHHHHHhhC
Q psy9827 575 ---SHVFTGTITLS--GVDVWYRKTRELIEKQQ 602 (627)
Q Consensus 575 ---~~~fd~vi~n~--~l~~~~~~l~~~i~~~~ 602 (627)
.+.||.+|.++ +++++++.|.+.+.+.+
T Consensus 143 ~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 143 IDDLSIYDLVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred ccccccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 25789888875 78999999999887643
No 131
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=90.59 E-value=0.18 Score=52.69 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=49.6
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCCCcc---------c--------------CCCCCCCCHHHHHHHHhcccccCCce
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPDKFS---------A--------------PRKFNFILWATIKDTAMYQSSKEPGM 507 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~---------~--------------~~~~~Fvs~e~f~~~i~~~~~~~~~~ 507 (627)
.+.|+|+||+ |++|..+|.+.+...+- . -++|||++...+.+....+.|.+-..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~ 83 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL 83 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence 4689999999 99999999888654211 1 13457888777776544444322111
Q ss_pred ehHHhHHhCCCcEEEecC
Q psy9827 508 YQGKDSMYQGKDSMYQGK 525 (627)
Q Consensus 508 Y~V~~v~~~gk~ciLdi~ 525 (627)
-.|++++++|+.+||+-.
T Consensus 84 ~~i~~i~~~gk~pIlvGG 101 (307)
T PRK00091 84 AAIADILARGKLPILVGG 101 (307)
T ss_pred HHHHHHHhCCCCEEEECc
Confidence 188899999999999744
No 132
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.42 E-value=1.6 Score=42.39 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=18.5
Q ss_pred CceEEEeCcc---HHHHHHHHhhhC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.+.|+|.||. |+|+.++|.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999998 999999987753
No 133
>KOG2199|consensus
Probab=90.31 E-value=0.14 Score=53.67 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=38.5
Q ss_pred ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827 313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA 385 (627)
Q Consensus 313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~ 385 (627)
.-.|||++|+ ...++ -|+.|..|||+.| +...| |+||....- ...||.||..-.
T Consensus 215 ~rkVRALYDF---eAaE~-----nELsFkaGdIItV-Ld~s~----~~WWKG~~~------~~~GlFPsnfVT 268 (462)
T KOG2199|consen 215 VRKVRALYDF---EAAED-----NELSFKAGDIITV-LDDSD----PNWWKGENH------RGIGLFPSNFVT 268 (462)
T ss_pred chhhhhhhcc---cccCC-----CccceecCcEEEE-cccCC----cchhccccC------Ccccccchhhhh
Confidence 3469999998 33332 3567889999999 65555 599998442 478999997543
No 134
>KOG3532|consensus
Probab=90.15 E-value=0.68 Score=51.72 Aligned_cols=68 Identities=24% Similarity=0.442 Sum_probs=53.7
Q ss_pred CCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy9827 210 KDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283 (627)
Q Consensus 210 ~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~~ 283 (627)
....|++.. .-+-|-.|.++ .+|-.+.|.+||++++|||.+++ +..++...++...+.++..+.++-.
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~n----s~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~~ 456 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDN----SLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSLD 456 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCC----ChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeeccc
Confidence 344555553 24668888776 45666789999999999999999 9999999999999888888877543
No 135
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=90.00 E-value=0.13 Score=38.03 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=26.7
Q ss_pred CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
++.|.+||++.| +...+. .||.++..+ .+.|+||...
T Consensus 15 ~l~~~~Gd~v~v-~~~~~~----~w~~~~~~~-----~~~G~vP~~~ 51 (54)
T cd00174 15 ELSFKKGDIIEV-LEKSDD----GWWEGRLLG-----GKRGLFPSNY 51 (54)
T ss_pred CCCCCCCCEEEE-EEcCCC----CeEEEEECC-----CCEEEEcccc
Confidence 456679999998 554333 799997653 1789999864
No 136
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=89.74 E-value=0.25 Score=36.88 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=34.2
Q ss_pred eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
.+++|.++|.+ . ...++.+..||++.| +..++. .||.++... .+.|++|+..
T Consensus 3 ~~~~a~~~~~~---~-----~~~~l~~~~Gd~v~v-~~~~~~----~w~~~~~~~-----~~~G~vP~~~ 54 (58)
T smart00326 3 PQVRALYDYTA---Q-----DPDELSFKKGDIITV-LEKSDD----GWWKGRLGR-----GKEGLFPSNY 54 (58)
T ss_pred cEEEEeeeeCC---C-----CCCCCCCCCCCEEEE-EEcCCC----CeEEEEeCC-----CCEEEEchHH
Confidence 35667777722 1 123445679999998 554333 799997653 4789999864
No 137
>KOG3129|consensus
Probab=89.71 E-value=0.91 Score=43.83 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=42.7
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCC-HHHHHHHHHc-CCCeEEEEEEeCCCC
Q psy9827 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMS-VKEARKLIDS-SKEKLSLTIRREVPR 284 (627)
Q Consensus 221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s-~~e~~~~l~~-~~~~v~l~V~r~~~~ 284 (627)
++|.+|.++ ++|..+||+.||.|+.+.+..--+.. ...+....+. .+..+.++|.|.+..
T Consensus 141 a~V~sV~~~----SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 141 AVVDSVVPG----SPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred EEEeecCCC----ChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 679999887 56778999999999999776654322 4444444443 456788899886653
No 138
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.66 E-value=4.9 Score=37.55 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=45.1
Q ss_pred HHhHHhCCCcEEEecC-Cce-eccccCCCCceeEEEEcCCC-c--c---cCCCCCHHHHHHHHHHHHHHHHH-----h--
Q psy9827 510 GKDSMYQGKDSMYQGK-ESM-YQGKDSMYQGKDSMYQGKDS-M--Y---QGKDIKKEVKIKLFEQSQKLEKV-----W-- 574 (627)
Q Consensus 510 V~~v~~~gk~ciLdi~-~~l-~~~~~~~~P~~~vIFI~pps-l--~---~~~~~~e~~~~~~~~~~~~~e~~-----~-- 574 (627)
+.+.+..+..||+|-. ... .. ....+ +|||..|- . + ++...+.+++.+.+.+..+.+.. |
T Consensus 67 i~~~~~~~~~~Vi~g~~~~~~~~---~~~d~--~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~ 141 (171)
T TIGR02173 67 IHEIALKEKNVVLESRLAGWIVR---EYADV--KIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGI 141 (171)
T ss_pred HHHHHhcCCCEEEEecccceeec---CCcCE--EEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444446678998765 333 22 22336 88988875 1 1 11223444455544443333322 1
Q ss_pred ----cCcccEEEECC--CHHHHHHHHHHHH
Q psy9827 575 ----SHVFTGTITLS--GVDVWYRKTRELI 598 (627)
Q Consensus 575 ----~~~fd~vi~n~--~l~~~~~~l~~~i 598 (627)
...||.+|..+ +.|+ ++.+..++
T Consensus 142 ~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 142 DIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred CccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 14688887766 5777 77776654
No 139
>KOG3875|consensus
Probab=89.62 E-value=0.12 Score=52.44 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=43.4
Q ss_pred ceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCC-cCccccccCCCCccceeeeccChh
Q psy9827 313 NLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSP-INNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 313 ~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~-~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
..+-||.+|+ .+.+ | .|..|.+||+|+| .+++|....+ .||+.+..+ | ...|+||...
T Consensus 268 ~~~arA~YdF---~a~n----p-~ElSlk~Gdml~i-a~K~dq~~~~~~gW~lat~d--g--~~tG~iP~NY 326 (362)
T KOG3875|consen 268 HEFARALYDF---VARN----P-VELSLKKGDMLAI-ASKEDQQGVRCEGWLLATRD--G--GTTGLIPINY 326 (362)
T ss_pred HHHHHHHhhh---hcCC----H-HHhhhhcCchhhc-ccccccCCCCCcceeeeecc--C--Ceeeeeehhh
Confidence 3667888888 3322 3 5778899999999 8888875544 699998763 3 5899999974
No 140
>KOG0606|consensus
Probab=89.54 E-value=1.1 Score=53.12 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=50.7
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy9827 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 282 (627)
Q Consensus 221 i~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r~~ 282 (627)
..|..|..| ++|..++|+.||.|+-|||+.+.++.|.|+.++|-+.+..+++.+..-.
T Consensus 660 h~v~sv~eg----sPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttple 717 (1205)
T KOG0606|consen 660 HSVGSVEEG----SPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTPLE 717 (1205)
T ss_pred eeeeeecCC----CCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeeccc
Confidence 667888776 5666789999999999999999999999999999999999988876543
No 141
>KOG1118|consensus
Probab=88.78 E-value=0.24 Score=50.30 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=42.5
Q ss_pred CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
.+..++||.+++ .|.++ .|++|..||++.+ .+|-|+ +||-....| ..|+.|...
T Consensus 304 ~~~p~cralYdF---epenE-----gEL~fkeGDlI~l-~~QIde----nWyeG~~~g------~sG~FPvnY 357 (366)
T KOG1118|consen 304 MDQPCCRALYDF---EPENE-----GELDFKEGDLITL-TNQIDE----NWYEGEKHG------ESGMFPVNY 357 (366)
T ss_pred ccchhheeeecc---CCCCC-----CccCcccCceeee-hhhcCc----chhhheecC------ccCccccce
Confidence 356789999999 54442 5789999999999 888887 999998775 477888753
No 142
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=88.43 E-value=1.8 Score=42.57 Aligned_cols=60 Identities=12% Similarity=-0.053 Sum_probs=38.7
Q ss_pred EEEEcCCC--cccC----CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-CHHHHHHHHHHHHHhh
Q psy9827 541 SMYQGKDS--MYQG----KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 541 vIFI~pps--l~~~----~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~l~~~~~~l~~~i~~~ 601 (627)
+|||.+|. +.++ .+.++++++++++.....+ ++...+|++|.|+ ++++...++..+++..
T Consensus 137 ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 137 IVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 66776554 1111 3345666777765432222 3335689999997 8999999999988764
No 143
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=85.89 E-value=1.7 Score=42.36 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=53.2
Q ss_pred CCCcEEEecC---CceeccccCCCCceeEEEEcCCCcc------cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-
Q psy9827 516 QGKDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDSMY------QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS- 585 (627)
Q Consensus 516 ~gk~ciLdi~---~~l~~~~~~~~P~~~vIFI~ppsl~------~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~- 585 (627)
+++.+++|+- +.-.. .++-. +|||..|.-. ++...+++++..++.. +.-..+.....|+||.|+
T Consensus 102 ~~~~vi~e~pLL~E~~~~---~~~D~--vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~-Q~~~~~k~~~aD~vI~N~~ 175 (196)
T PRK14732 102 EGKLVIWEVPLLFETDAY---TLCDA--TVTVDSDPEESILRTISRDGMKKEDVLARIAS-QLPITEKLKRADYIVRNDG 175 (196)
T ss_pred cCCcEEEEeeeeeEcCch---hhCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH-cCCHHHHHHhCCEEEECCC
Confidence 4678888886 21111 34456 8999988721 1234466666666554 333345677789999998
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy9827 586 GVDVWYRKTRELIEKQQ 602 (627)
Q Consensus 586 ~l~~~~~~l~~~i~~~~ 602 (627)
++++...++..++++..
T Consensus 176 ~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 176 NREGLKEECKILYSTLL 192 (196)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999998887643
No 144
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=85.81 E-value=3.6 Score=42.66 Aligned_cols=65 Identities=6% Similarity=0.052 Sum_probs=40.6
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCc---------ee-----hHHhHHhC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPG---------MY-----QGKDSMYQ 516 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~---------~Y-----~V~~v~~~ 516 (627)
.+.|||+||+ |+|+.++|.+.++. ..|++.+.+..++.......+. .+ .+.+.+++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~-------~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPK-------AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKS 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCC-------CEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHc
Confidence 3578889998 99999999887642 2345555555544211100010 11 45666788
Q ss_pred CCcEEEecC
Q psy9827 517 GKDSMYQGK 525 (627)
Q Consensus 517 gk~ciLdi~ 525 (627)
|+.+|+|-.
T Consensus 75 g~~vIid~~ 83 (300)
T PHA02530 75 GKSVIISDT 83 (300)
T ss_pred CCeEEEeCC
Confidence 999999866
No 145
>PRK05480 uridine/cytidine kinase; Provisional
Probab=85.79 E-value=7.6 Score=37.90 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=18.6
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhC
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
...-|.|.||+ |+||.+.|....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567779998 999999998765
No 146
>KOG4226|consensus
Probab=85.23 E-value=0.38 Score=47.92 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=40.0
Q ss_pred CCcee-eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827 311 SQNLY-VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA 385 (627)
Q Consensus 311 ~~~~y-vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~ 385 (627)
+..++ |.|++.++. .--.|+.|.+||.|+| +.. +..+|.||.|+... .++||+|-...+
T Consensus 188 s~vl~vVvaLYsFss--------sndeELsFeKGerlei-vd~--Pe~DPdWwkarn~~-----G~vGLVPrNYv~ 247 (379)
T KOG4226|consen 188 SRVLHVVVALYSFSS--------SNDEELSFEKGERLEI-VDK--PENDPDWWKARNAR-----GQVGLVPRNYVV 247 (379)
T ss_pred ceEEEEEEEEecccC--------CChhhcccccCceeEe-ccC--CCCCchHHhhcccC-----CccceeecceEE
Confidence 34555 566666522 2235677889999999 432 34578999998753 589999987543
No 147
>PF12812 PDZ_1: PDZ-like domain
Probab=85.17 E-value=1.6 Score=35.79 Aligned_cols=40 Identities=30% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHH
Q psy9827 72 VGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111 (627)
Q Consensus 72 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~ 111 (627)
.+.++.....|+++...|+..|-.|.+|||+++.++....
T Consensus 30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~ 69 (78)
T PF12812_consen 30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDDFI 69 (78)
T ss_pred CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHHHH
Confidence 3456667788999988889999999999999998875544
No 148
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=84.61 E-value=3.4 Score=37.87 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.2
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCC-CCEEEEeCceeCCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy9827 220 KIFVKEVTHRLDNNASPGTHQLAE-GDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRRE 281 (627)
Q Consensus 220 gi~V~~V~~g~~~~~~a~~~~L~~-GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~l~V~r~ 281 (627)
+.-|.+|.++ ++|..+||.+ .|.|+.+++..+. +.+++...++.. +..+.|.|...
T Consensus 44 ~~~Vl~V~p~----SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 44 GWHVLRVAPN----SPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp EEEEEEE-TT----SHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred eEEEeEecCC----CHHHHCCccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence 6779999887 5666788998 6999999999988 678888888874 56888888653
No 149
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=84.28 E-value=2.6 Score=46.42 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=48.7
Q ss_pred cEEEEEeec-CCCCCeeeeeC---CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeE
Q psy9827 199 TLRVQLSKS-RKKDDFGIILG---NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 274 (627)
Q Consensus 199 ~~~V~L~k~-~~~~~~gi~~~---~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 274 (627)
.+++++... .....+|+..+ ++..|+.|.+| ++|..+||.+||.|++|||.+-...++ +++..+
T Consensus 438 ~~gL~~~~~~~~~~~LGl~v~~~~g~~~i~~V~~~----gPA~~AGl~~Gd~ivai~G~s~~l~~~--------~~~d~i 505 (558)
T COG3975 438 RFGLTFTPKPREAYYLGLKVKSEGGHEKITFVFPG----GPAYKAGLSPGDKIVAINGISDQLDRY--------KVNDKI 505 (558)
T ss_pred hcceEEEecCCCCcccceEecccCCeeEEEecCCC----ChhHhccCCCccEEEEEcCcccccccc--------ccccce
Confidence 355555543 33446777775 46899999876 566789999999999999993221111 345677
Q ss_pred EEEEEeCCC
Q psy9827 275 SLTIRREVP 283 (627)
Q Consensus 275 ~l~V~r~~~ 283 (627)
.+.+.+.+.
T Consensus 506 ~v~~~~~~~ 514 (558)
T COG3975 506 QVHVFREGR 514 (558)
T ss_pred EEEEccCCc
Confidence 777766543
No 150
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=81.36 E-value=3.5 Score=44.30 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=41.6
Q ss_pred EEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC--eeEEEEEe
Q psy9827 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQD--QIHLIVQN 129 (627)
Q Consensus 75 ~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~--~V~L~v~r 129 (627)
++..+..+|+|+.+|+++||.++++|+..+.+++............. .+.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 45579999999999999999999999999998876554444433222 26666665
No 151
>KOG1029|consensus
Probab=81.16 E-value=0.83 Score=51.77 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=38.9
Q ss_pred eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhH
Q psy9827 316 VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARA 385 (627)
Q Consensus 316 vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~ 385 (627)
|=|.+|| ...+| -+++|++|||+.| +++||. .||+..+. ...||.||..-+
T Consensus 1056 viamYdY---~Aqnd-----DELsF~kgdiI~V-lnkdep----eWW~Ge~n------g~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1056 VIAMYDY---EAQND-----DELSFKKGDIINV-LNKDEP----EWWSGERN------GKSGLFPSNYVQ 1106 (1118)
T ss_pred eEEeecc---ccCCc-----ccccccCCCEEEe-cCCCCh----hhhccccc------CccccCcccccc
Confidence 6677788 44333 2678999999999 888885 99998553 488999998653
No 152
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.64 E-value=12 Score=35.25 Aligned_cols=144 Identities=11% Similarity=0.031 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCcc---HHHHHHHHhhhCCCCccc-CCCCCCCCHHHHHHHH--------hcccccCCceehHHh-HHhC
Q psy9827 450 HPGFIRPVVLFGPV---ADLARDKLLKDFPDKFSA-PRKFNFILWATIKDTA--------MYQSSKEPGMYQGKD-SMYQ 516 (627)
Q Consensus 450 ~~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~-~~~~~Fvs~e~f~~~i--------~~~~~~~~~~Y~V~~-v~~~ 516 (627)
.|.|.|.|.|+||- |++|.++|-..+-..+.- ..++ | .|+... +|..-.-|++-.++. +-..
T Consensus 4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re-~----v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a 78 (187)
T COG3172 4 RPFFVKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE-Y----VFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYA 78 (187)
T ss_pred chhhheeeeeecCcccChHHHHHHHHHHhCCCchhHHHHH-H----HHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCC
Confidence 47789999999996 999999998754332221 1111 1 111111 111111233323333 2335
Q ss_pred CCcEEEecC---Cce----ec--cccC------CCCceeEEEEcCCCccc----CC-CCCHHHHHHHHHHHHHHHHHhcC
Q psy9827 517 GKDSMYQGK---ESM----YQ--GKDS------MYQGKDSMYQGKDSMYQ----GK-DIKKEVKIKLFEQSQKLEKVWSH 576 (627)
Q Consensus 517 gk~ciLdi~---~~l----~~--~~~~------~~P~~~vIFI~ppsl~~----~~-~~~e~~~~~~~~~~~~~e~~~~~ 576 (627)
.|++++|.| -.+ +. -++. =+|+ +++.+.+|...- ++ -..+.+-++..+.++++=.++..
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~-DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~ 157 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF-DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI 157 (187)
T ss_pred CceEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc-ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence 799999999 111 11 0111 1344 245556665211 11 11222234444444443333443
Q ss_pred cccEEEECC-CHHHHHHHHHHHHHhh
Q psy9827 577 VFTGTITLS-GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 577 ~fd~vi~n~-~l~~~~~~l~~~i~~~ 601 (627)
-+|++.+ +-++-|.+..+++++.
T Consensus 158 --~~v~i~~~~y~eR~~~~~~aV~el 181 (187)
T COG3172 158 --PFVVIEGEDYLERYLQAVEAVEEL 181 (187)
T ss_pred --cEEEEcCCCHHHHHHHHHHHHHHH
Confidence 3565555 7777777777777664
No 153
>PLN02200 adenylate kinase family protein
Probab=77.91 E-value=24 Score=35.30 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=23.8
Q ss_pred CccccchhhccCC-CCCceEEEeCcc---HHHHHHHHhhhC
Q psy9827 439 KFPAYERVSLRHP-GFIRPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 439 ~~~~Ye~V~~~~~-~~~RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
++.+.|.+-.... ..+.-|+|+||+ |+|+.++|.+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 27 EIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred cccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455554443322 223457778998 999999998765
No 154
>PRK14530 adenylate kinase; Provisional
Probab=77.86 E-value=41 Score=32.98 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.6
Q ss_pred eEEEeCcc---HHHHHHHHhhhCC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
-|+|+||+ |+|+.++|.+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 47889998 9999999987654
No 155
>PLN02422 dephospho-CoA kinase
Probab=77.83 E-value=5.6 Score=39.83 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=52.4
Q ss_pred CcEEEecC---CceeccccCCCCceeEEEEcCCCc---c---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-CH
Q psy9827 518 KDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDSM---Y---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-GV 587 (627)
Q Consensus 518 k~ciLdi~---~~l~~~~~~~~P~~~vIFI~ppsl---~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~l 587 (627)
+.+++|+- +.=.. .++-. +|||..|.- + ++.+.+++++.+++++-.-.| +....-|+||.|+ ++
T Consensus 108 ~~vv~eipLL~E~~~~---~~~D~--vI~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~e-ek~~~AD~VI~N~gs~ 181 (232)
T PLN02422 108 KVIVLDIPLLFETKMD---KWTKP--VVVVWVDPETQLERLMARDGLSEEQARNRINAQMPLD-WKRSKADIVIDNSGSL 181 (232)
T ss_pred CEEEEEehhhhhcchh---hhCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChh-HHHhhCCEEEECCCCH
Confidence 57778876 21111 23345 788888761 1 113455665665553322222 3455678999998 89
Q ss_pred HHHHHHHHHHHHhhCCCCee
Q psy9827 588 DVWYRKTRELIEKQQSSPVW 607 (627)
Q Consensus 588 ~~~~~~l~~~i~~~~~~~~W 607 (627)
++...++..++++......|
T Consensus 182 e~L~~qv~~ll~~l~~~~~~ 201 (232)
T PLN02422 182 EDLKQQFQKVLEKIRAPLTW 201 (232)
T ss_pred HHHHHHHHHHHHHHhcchHH
Confidence 99999999999887655445
No 156
>PRK00131 aroK shikimate kinase; Reviewed
Probab=77.33 E-value=10 Score=35.33 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=23.0
Q ss_pred HHhcCcccEEEECC--CHHHHHHHHHHHHHhh
Q psy9827 572 KVWSHVFTGTITLS--GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 572 ~~~~~~fd~vi~n~--~l~~~~~~l~~~i~~~ 601 (627)
..|.+.+|.+|..+ +.+++.+.|.+.|...
T Consensus 141 ~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 141 PLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred HHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 34667789888754 7899999999988754
No 157
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=76.40 E-value=10 Score=37.03 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=49.3
Q ss_pred CcEEEecCCce-eccccCCCCceeEEEEcCCCc---c---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-CHHH
Q psy9827 518 KDSMYQGKESM-YQGKDSMYQGKDSMYQGKDSM---Y---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-GVDV 589 (627)
Q Consensus 518 k~ciLdi~~~l-~~~~~~~~P~~~vIFI~ppsl---~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~l~~ 589 (627)
..+++++. -| ......++-. +|||..|.- + ++...+++++..+++.-...+. ....-|+||.|+ +++.
T Consensus 108 ~~vv~e~p-lL~e~g~~~~~D~--vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~-k~~~ad~vI~N~g~~e~ 183 (200)
T PRK14734 108 KVAVYDMP-LLVEKGLDRKMDL--VVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDDV-RLKAADIVVDNNGTREQ 183 (200)
T ss_pred CEEEEEee-ceeEcCccccCCe--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCHHH-HHHhCCEEEECcCCHHH
Confidence 56777766 11 1100124456 899998861 1 1123456656666554333222 234568899987 8999
Q ss_pred HHHHHHHHHHhhCC
Q psy9827 590 WYRKTRELIEKQQS 603 (627)
Q Consensus 590 ~~~~l~~~i~~~~~ 603 (627)
.+.++..++++..+
T Consensus 184 l~~~v~~~~~~~~~ 197 (200)
T PRK14734 184 LLAQVDGLIAEILS 197 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877644
No 158
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=74.27 E-value=5.4 Score=36.00 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=38.6
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCC------------cee-hHHhHHhCCCc
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEP------------GMY-QGKDSMYQGKD 519 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~------------~~Y-~V~~v~~~gk~ 519 (627)
.|+++||+ |+|+.+.|.+..+ ..+++.+.+...+.....-.. .++ .++..+..|.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 72 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNS 72 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--------CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 37889998 9999999987654 124455555444332111011 111 66777889999
Q ss_pred EEEecC
Q psy9827 520 SMYQGK 525 (627)
Q Consensus 520 ciLdi~ 525 (627)
+|+|-.
T Consensus 73 ~vvd~~ 78 (143)
T PF13671_consen 73 VVVDNT 78 (143)
T ss_dssp EEEESS
T ss_pred ceeccC
Confidence 999854
No 159
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=74.19 E-value=1.3 Score=45.72 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=41.9
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCccc----------------C-------CCCCCCCHHHHHHHHhcccccC-Ccee
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSA----------------P-------RKFNFILWATIKDTAMYQSSKE-PGMY 508 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~----------------~-------~~~~Fvs~e~f~~~i~~~~~~~-~~~Y 508 (627)
.|+|+||+ |++|..+|.+.++...-+ | ++|||++.-...+ .+. +++|
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~------~~~v~~f~ 74 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE------SYSAADFQ 74 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh------eEcHHHHH
Confidence 47899999 999999999887632222 1 2335554322222 122 3444
Q ss_pred -----hHHhHHhCCCcEEEecC
Q psy9827 509 -----QGKDSMYQGKDSMYQGK 525 (627)
Q Consensus 509 -----~V~~v~~~gk~ciLdi~ 525 (627)
.|+++.++||.+||.-.
T Consensus 75 ~~a~~~i~~~~~~g~~pi~vGG 96 (287)
T TIGR00174 75 TLALNAIADITARGKIPLLVGG 96 (287)
T ss_pred HHHHHHHHHHHhCCCCEEEEcC
Confidence 88999999999999655
No 160
>KOG3601|consensus
Probab=73.97 E-value=2.8 Score=40.70 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccCh
Q psy9827 311 SQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNK 382 (627)
Q Consensus 311 ~~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~ 382 (627)
....|++|++++.| . |-.++++.+||+.+| +...| |+||-....| ++|+.|..
T Consensus 161 ~~~~yqQa~~df~~---~-----pp~ql~f~~gq~~~v-~~~ss----~~ww~Gs~lg------~agiFpag 213 (222)
T KOG3601|consen 161 PTNYYQQALYDFQP---Q-----PPGQLAFRRGQQIQV-LDSSS----PFWWFGSKLG------RAGIFPAG 213 (222)
T ss_pred ccchhhhhcCCCCC---C-----CchhhccccCCccee-ecCCC----cchhhccccC------ceeeecCc
Confidence 45788999888722 2 345778889999999 66666 4999998765 56666654
No 161
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=73.94 E-value=18 Score=34.21 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=17.3
Q ss_pred ceEEEeCcc---HHHHHHHHhhhC
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.-|+|+||+ |+|+.++|.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457779998 999999998764
No 162
>KOG4407|consensus
Probab=72.89 E-value=1.8 Score=51.90 Aligned_cols=56 Identities=32% Similarity=0.489 Sum_probs=50.3
Q ss_pred CEEEEEeCCCChhhhcCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEE
Q psy9827 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128 (627)
Q Consensus 73 gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~ 128 (627)
-+||.+|.+++||+.+-|+.||+++.||..++.++....++.++++..-..++.|.
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~ 199 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVV 199 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceec
Confidence 48999999999999999999999999999999999999999998877666666654
No 163
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=69.77 E-value=15 Score=34.90 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.2
Q ss_pred eEEEeCcc---HHHHHHHHhhhC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.|+|.||. |+|+.++|.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899998 999999998765
No 164
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=69.68 E-value=34 Score=33.26 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=20.1
Q ss_pred CCCceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 452 GFIRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 452 ~~~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
....-|.|+||+ |+|+.+.|....+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899998 9999999987654
No 165
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=68.61 E-value=9.6 Score=36.55 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=44.9
Q ss_pred CCCcEEEecC---CceeccccCCCCceeEEEEcCCC---cc---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-
Q psy9827 516 QGKDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDS---MY---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS- 585 (627)
Q Consensus 516 ~gk~ciLdi~---~~l~~~~~~~~P~~~vIFI~pps---l~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~- 585 (627)
+|+.+++++. +.-.. .++-. +|||..|. ++ .+...+++++.+++..... ..+.....|+||.|+
T Consensus 104 ~~~~vvi~~pll~e~~~~---~~~D~--vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~-~~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 104 KLAYVLLDVPLLFENKLR---SLCDR--VIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMD-IEERLARADDVIDNSA 177 (188)
T ss_pred CCCEEEEEchHhhhCCcH---HhCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCC-HHHHHHhCCEEEECCC
Confidence 4567888877 22122 34456 78888876 11 1123456656666655432 234566789999998
Q ss_pred CHHHHHHHHH
Q psy9827 586 GVDVWYRKTR 595 (627)
Q Consensus 586 ~l~~~~~~l~ 595 (627)
++++...++.
T Consensus 178 ~~e~l~~~~~ 187 (188)
T TIGR00152 178 TLADLVKQLE 187 (188)
T ss_pred CHHHHHHHHh
Confidence 6887777764
No 166
>PRK13946 shikimate kinase; Provisional
Probab=68.58 E-value=36 Score=32.49 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=67.4
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHH-HHHHHhc--cc---ccCCcee------hHHhHHhCC
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWAT-IKDTAMY--QS---SKEPGMY------QGKDSMYQG 517 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~-f~~~i~~--~~---~~~~~~Y------~V~~v~~~g 517 (627)
+.+.|+|+|+. |+|+-+.|-+..--. |+..+. .+.+... .+ .+...+| .++++++.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~--------~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~ 80 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLP--------FLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGG 80 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC--------eECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Confidence 56899999987 999999987753211 221111 1111000 00 0011122 455555555
Q ss_pred CcEEEecC-Cce-ecc-ccCC--CCceeEEEEcCCC--cccC-----CC--CCHHHHHHHHHHHH-HHHHHhcCcccEEE
Q psy9827 518 KDSMYQGK-ESM-YQG-KDSM--YQGKDSMYQGKDS--MYQG-----KD--IKKEVKIKLFEQSQ-KLEKVWSHVFTGTI 582 (627)
Q Consensus 518 k~ciLdi~-~~l-~~~-~~~~--~P~~~vIFI~pps--l~~~-----~~--~~e~~~~~~~~~~~-~~e~~~~~~fd~vi 582 (627)
.||+-.. +.. ... ...+ ..+ +||+..|- +.++ .+ ...++..+.+++.. +-+..|.. +|.+|
T Consensus 81 -~~Vi~~ggg~~~~~~~r~~l~~~~~--~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~-~dl~i 156 (184)
T PRK13946 81 -PLVLATGGGAFMNEETRAAIAEKGI--SVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAE-ADLTV 156 (184)
T ss_pred -CeEEECCCCCcCCHHHHHHHHcCCE--EEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHh-CCEEE
Confidence 5666654 211 100 0011 245 89998774 1111 11 01111222222221 12333443 68888
Q ss_pred ECC--CHHHHHHHHHHHHHhhCC
Q psy9827 583 TLS--GVDVWYRKTRELIEKQQS 603 (627)
Q Consensus 583 ~n~--~l~~~~~~l~~~i~~~~~ 603 (627)
..+ +.+++++.+.+.|.+...
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 157 ASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred ECCCCCHHHHHHHHHHHHHHhhc
Confidence 654 678999999988876443
No 167
>KOG1738|consensus
Probab=68.01 E-value=4.7 Score=45.21 Aligned_cols=68 Identities=15% Similarity=0.338 Sum_probs=54.1
Q ss_pred CCCeeeeeC----CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy9827 210 KDDFGIILG----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280 (627)
Q Consensus 210 ~~~~gi~~~----~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~l~V~r 280 (627)
..++|+-+. +.++|+.+.+++ .+.....|..||.++.||++.+-+..+.-++..|......+.+.|..
T Consensus 212 ~eglg~~I~Ssydg~h~~s~~~e~S---pad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDGPHVTSKIFEQS---PADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred ccCCceEEeeecCCceeccccccCC---hHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 344554442 568899998884 45667899999999999999999999999999999887777776654
No 168
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=67.06 E-value=32 Score=31.89 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.6
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
|+|+||+ |+|+.+.|.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 5789998 9999999987654
No 169
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=66.70 E-value=8.1 Score=38.97 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=67.2
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHH----h-cccccCCcee-hHHhHHhCCCcEEEecC-
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTA----M-YQSSKEPGMY-QGKDSMYQGKDSMYQGK- 525 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i----~-~~~~~~~~~Y-~V~~v~~~gk~ciLdi~- 525 (627)
.|||+|+. |+|+.+.|.+.+.... ....+++.+.+.+.. + +........+ .++..+++|..+|+|-.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~---~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~ 77 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKN---IDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTN 77 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcC---CceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 47899988 9999999876543211 111122222221111 0 0001111122 68888889999999976
Q ss_pred ---C---ce--eccccCCCCceeEEEEcCCC--cccC--CCC---CHHHHHHHHHHHHHHHHHh-cCcccEEEECC---C
Q psy9827 526 ---E---SM--YQGKDSMYQGKDSMYQGKDS--MYQG--KDI---KKEVKIKLFEQSQKLEKVW-SHVFTGTITLS---G 586 (627)
Q Consensus 526 ---~---~l--~~~~~~~~P~~~vIFI~pps--l~~~--~~~---~e~~~~~~~~~~~~~e~~~-~~~fd~vi~n~---~ 586 (627)
+ .+ .++.. -.|+ .+||+..|- ..++ +|. .++.+..++++...-...| +..-+.+|..+ +
T Consensus 78 ~~~~~r~~l~~~ak~~-~~~~-~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~ 155 (249)
T TIGR03574 78 YYNSMRRDLINIAKEY-NKNY-IIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKID 155 (249)
T ss_pred hHHHHHHHHHHHHHhC-CCCE-EEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCC
Confidence 1 12 11111 2343 167887774 1111 222 2332344433322111111 12345666543 4
Q ss_pred HHHHHHHHHHHHHh
Q psy9827 587 VDVWYRKTRELIEK 600 (627)
Q Consensus 587 l~~~~~~l~~~i~~ 600 (627)
.++.+++|...+..
T Consensus 156 ~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 156 YNEILEEILEISEN 169 (249)
T ss_pred HHHHHHHHHHHhhc
Confidence 57788887776643
No 170
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=66.67 E-value=8.8 Score=36.79 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=33.0
Q ss_pred ceeEEEEccCCCCEEEEEeCCCChhhhcCCCCCCEEEEEC
Q psy9827 61 SVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVN 100 (627)
Q Consensus 61 ~lG~~i~g~~~~gi~V~~V~~gspA~~aGL~~GD~Il~Vn 100 (627)
..|+.+...+ ..+.|..|..||+|+++|+..|+.|++|-
T Consensus 112 ~~GL~l~~e~-~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEEG-GKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred hCCCEEEeeC-CEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 4688887653 45899999999999999999999988873
No 171
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=64.57 E-value=63 Score=30.41 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.0
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
|+|+||+ |+|+.++|.+.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 6889988 9999999988653
No 172
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=64.45 E-value=24 Score=34.33 Aligned_cols=22 Identities=5% Similarity=-0.159 Sum_probs=18.2
Q ss_pred CceEEEeCcc---HHHHHHHHhhhC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.+.|+|.|++ |+|+..+|..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578889987 999999998764
No 173
>PRK14532 adenylate kinase; Provisional
Probab=64.27 E-value=66 Score=30.56 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
|+|+||. |+|+.++|.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 7899988 9999999987653
No 174
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=63.84 E-value=69 Score=31.18 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.4
Q ss_pred EEEeCcc---HHHHHHHHhhhC
Q psy9827 457 VVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~ 475 (627)
|+|+||+ |+|+.++|.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889988 999999998765
No 175
>KOG2921|consensus
Probab=62.14 E-value=15 Score=39.07 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=36.9
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcC
Q psy9827 219 NKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 270 (627)
Q Consensus 219 ~gi~V~~V~~g~~~~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~ 270 (627)
.|+.|.+|...+| +....||.+||+|..+||-+|. +.++....++.+
T Consensus 220 ~gV~Vtev~~~Sp---l~gprGL~vgdvitsldgcpV~--~v~dW~ecl~ts 266 (484)
T KOG2921|consen 220 EGVTVTEVPSVSP---LFGPRGLSVGDVITSLDGCPVH--KVSDWLECLATS 266 (484)
T ss_pred ceEEEEeccccCC---CcCcccCCccceEEecCCcccC--CHHHHHHHHHhh
Confidence 4677888876543 3334589999999999999999 888888888763
No 176
>KOG4371|consensus
Probab=60.66 E-value=9.5 Score=45.19 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=55.8
Q ss_pred CceeEEEEccC-CCCEEEEEeCCCChhhhcC-CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeeEEEEEe
Q psy9827 60 GSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129 (627)
Q Consensus 60 g~lG~~i~g~~-~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~g~~V~L~v~r 129 (627)
.++|+++..-. ..|+++..+...+.|...| ++.||++...+|.++.+.+-.+...-++-.-+.+.+++.+
T Consensus 1257 ~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1257 ATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred ccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence 37888877642 4579999888888888888 9999999999999999999887766666555667666654
No 177
>PRK14531 adenylate kinase; Provisional
Probab=60.59 E-value=62 Score=30.76 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.6
Q ss_pred ceEEEeCcc---HHHHHHHHhhhC
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
+=|+|+||+ |+|+.++|.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348899998 999999998764
No 178
>PLN02840 tRNA dimethylallyltransferase
Probab=60.41 E-value=3.8 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.2
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPD 477 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~ 477 (627)
...|+|+||. |++|...|.+.+..
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 3578999999 99999999888653
No 179
>PRK08233 hypothetical protein; Provisional
Probab=59.36 E-value=91 Score=29.09 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.4
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
..|.|.|++ |+|+.++|.+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567778998 9999999988765
No 180
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=58.45 E-value=26 Score=33.94 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=46.5
Q ss_pred CCcEEEecC---CceeccccCCCCceeEEEEcCCC-c--c---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-C
Q psy9827 517 GKDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDS-M--Y---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-G 586 (627)
Q Consensus 517 gk~ciLdi~---~~l~~~~~~~~P~~~vIFI~pps-l--~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~ 586 (627)
...+++|+- +.-.. .++=. +|||..|- . + ++...+++++.++.+.-.-++ .....-|+||.|+ +
T Consensus 107 ~~~vv~e~pll~E~~~~---~~~D~--ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~-~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 107 NPIVVLVIPLLFEAKLT---DLCSE--IWVVDCSPEQQLQRLIKRDGLTEEEAEARINAQWPLE-EKVKLADVVLDNSGD 180 (195)
T ss_pred CCEEEEEeHHhcCcchH---hCCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCCHH-HHHhhCCEEEECCCC
Confidence 457888876 21111 23335 78898775 1 1 112346665665554422122 3455678999997 8
Q ss_pred HHHHHHHHHHHHH
Q psy9827 587 VDVWYRKTRELIE 599 (627)
Q Consensus 587 l~~~~~~l~~~i~ 599 (627)
+++...++..++.
T Consensus 181 ~e~l~~qv~~~l~ 193 (195)
T PRK14730 181 LEKLYQQVDQLLK 193 (195)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 181
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=58.21 E-value=54 Score=31.33 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=68.3
Q ss_pred EEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCC------C--HHHHHHHHhcccccCCcee--hHHhHHhCC---CcE
Q psy9827 457 VVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFI------L--WATIKDTAMYQSSKEPGMY--QGKDSMYQG---KDS 520 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fv------s--~e~f~~~i~~~~~~~~~~Y--~V~~v~~~g---k~c 520 (627)
|+|+||+ |+|+.++|.+.++-. ....-.+|- + -.+....++.|+...+.+| .|++-+.+. ..+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~-hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~ 81 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP-HLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF 81 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-EEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence 7899999 999999998873210 000000110 1 1122233555665566666 666655543 256
Q ss_pred EEecC-Cce-----eccc-cCC-CCceeEEEEcCCC---cccC-CCC-----CHHHHHHHHHHHHHHHHHhcCcccEEEE
Q psy9827 521 MYQGK-ESM-----YQGK-DSM-YQGKDSMYQGKDS---MYQG-KDI-----KKEVKIKLFEQSQKLEKVWSHVFTGTIT 583 (627)
Q Consensus 521 iLdi~-~~l-----~~~~-~~~-~P~~~vIFI~pps---l~~~-~~~-----~e~~~~~~~~~~~~~e~~~~~~fd~vi~ 583 (627)
|||-- ..+ ..|. .++ .+.-.++.+..|. ++.. .+. +++..++++....+...-.-.+|...|.
T Consensus 82 I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~~~id 161 (178)
T COG0563 82 ILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYSVTID 161 (178)
T ss_pred EEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhheeecc
Confidence 77655 111 1100 011 2322278888887 1111 232 3454555544443322222234442333
Q ss_pred C-CCHHHHHHHHHHHH
Q psy9827 584 L-SGVDVWYRKTRELI 598 (627)
Q Consensus 584 n-~~l~~~~~~l~~~i 598 (627)
. ..+++.++++...+
T Consensus 162 ~~~~i~~v~~~i~~~l 177 (178)
T COG0563 162 GSGEIEEVLADILKAL 177 (178)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 2 26788888777654
No 182
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=57.70 E-value=74 Score=28.42 Aligned_cols=112 Identities=8% Similarity=0.088 Sum_probs=54.0
Q ss_pred EEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccc---cCCcee-hHHhHHhCCCcEEEecC--Cc
Q psy9827 457 VVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSS---KEPGMY-QGKDSMYQGKDSMYQGK--ES 527 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~---~~~~~Y-~V~~v~~~gk~ciLdi~--~~ 527 (627)
|+|+|++ |+|+.++|.+.+.-.|...- -+..+.+....+.-.. +...+. .+.++. .+..||+|-. ..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~---~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~Vidg~~~~~ 77 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG---GIRTEEVGKLASEVAAIPEVRKALDERQRELA-KKPGIVLEGRDIGT 77 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc---cCCHHHHHHHHHHhcccHhHHHHHHHHHHHHh-hCCCEEEEeeeeee
Confidence 6788988 99999999876432222111 2344555443322100 001111 333333 3456888765 22
Q ss_pred eeccccCCCCceeEEEEcCCC-cc-----c-----CCCCCHHHHHHHHHHHHHHH-HHhcCc
Q psy9827 528 MYQGKDSMYQGKDSMYQGKDS-MY-----Q-----GKDIKKEVKIKLFEQSQKLE-KVWSHV 577 (627)
Q Consensus 528 l~~~~~~~~P~~~vIFI~pps-l~-----~-----~~~~~e~~~~~~~~~~~~~e-~~~~~~ 577 (627)
+.. ...-+ +||+..|- ++ + ....+.+++++.+....+-+ ..|-++
T Consensus 78 ~~~---~~~~~--~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 134 (147)
T cd02020 78 VVF---PDADL--KIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAP 134 (147)
T ss_pred EEc---CCCCE--EEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccccc
Confidence 221 11224 77777664 21 1 12345665666666655533 444443
No 183
>KOG3220|consensus
Probab=57.08 E-value=14 Score=36.10 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCcEEEecC---Cc-eeccccCCCCceeEEEEcCCC--cccC---CCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC-C
Q psy9827 517 GKDSMYQGK---ES-MYQGKDSMYQGKDSMYQGKDS--MYQG---KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-G 586 (627)
Q Consensus 517 gk~ciLdi~---~~-l~~~~~~~~P~~~vIFI~pps--l~~~---~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-~ 586 (627)
-+.|+||+- +. +.. -+++. ++-..+-+ ++.+ ...++++++.+...-.-+|+... .-|+||.|+ +
T Consensus 107 ~r~ivlDiPLLFE~~~~~---~~~~t--vvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~sQmp~~~k~~-~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 107 YRVIVLDIPLLFEAKLLK---ICHKT--VVVTCDEELQLERLVERDELSEEDAENRLQSQMPLEKKCE-LADVVIDNNGS 180 (225)
T ss_pred CeEEEEechHHHHHhHHh---heeeE--EEEEECcHHHHHHHHHhccccHHHHHHHHHhcCCHHHHHH-hhheeecCCCC
Confidence 367999998 54 222 23333 33334443 2222 34567767766655444554433 347888865 8
Q ss_pred HHHHHHHHHHHHHhhCCCCe
Q psy9827 587 VDVWYRKTRELIEKQQSSPV 606 (627)
Q Consensus 587 l~~~~~~l~~~i~~~~~~~~ 606 (627)
++++++++..++...+..-.
T Consensus 181 ~~~l~~qv~~v~~~~~~s~~ 200 (225)
T KOG3220|consen 181 LEDLYEQVEKVLALLQKSIP 200 (225)
T ss_pred hHHHHHHHHHHHHHhcchhH
Confidence 99999999999988776533
No 184
>COG3911 Predicted ATPase [General function prediction only]
Probab=56.39 E-value=54 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=17.9
Q ss_pred CCCceEEEeCcc---HHHHHHHHhhh
Q psy9827 452 GFIRPVVLFGPV---ADLARDKLLKD 474 (627)
Q Consensus 452 ~~~RpvVl~Gp~---k~~l~~~Ll~~ 474 (627)
++++-+||+|-+ |+||...|-..
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHc
Confidence 344588998876 99999998753
No 185
>PRK06696 uridine kinase; Validated
Probab=56.14 E-value=40 Score=33.32 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=19.5
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
...+..|.|.|++ |+|+.++|.+..+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345566678998 9999999987654
No 186
>PRK00279 adk adenylate kinase; Reviewed
Probab=54.90 E-value=1.1e+02 Score=29.93 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=16.8
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
|+|+||. |+|+.++|.+.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7889987 9999999887654
No 187
>KOG3834|consensus
Probab=54.23 E-value=48 Score=35.81 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=45.9
Q ss_pred eeEEEEccCCCCE-----EEEEeCCCChhhhcCCC-CCCEEEEE-CCEeCCCCCHHHHHHHHhcCCCeeEEEEEeCCccc
Q psy9827 62 VGIRLTGGNKVGI-----FVTAVQPGSPASLQGLQ-PGDKILKV-NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134 (627)
Q Consensus 62 lG~~i~g~~~~gi-----~V~~V~~gspA~~aGL~-~GD~Il~V-nG~~v~~~~~~~~~~~l~~~g~~V~L~v~r~~~~~ 134 (627)
||++|.=....+. -|-+|.++|||+.|||+ -+|-|+-+ |.+.-. .++....+....++.+.|.|..-....
T Consensus 94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~--~eDl~~lIeshe~kpLklyVYN~D~d~ 171 (462)
T KOG3834|consen 94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE--EEDLFTLIESHEGKPLKLYVYNHDTDS 171 (462)
T ss_pred cceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccc--hHHHHHHHHhccCCCcceeEeecCCCc
Confidence 8887765433221 36689999999999988 67999888 554332 122223333466778888877544433
Q ss_pred c
Q psy9827 135 E 135 (627)
Q Consensus 135 ~ 135 (627)
.
T Consensus 172 ~ 172 (462)
T KOG3834|consen 172 C 172 (462)
T ss_pred c
Confidence 3
No 188
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=53.32 E-value=2.6e+02 Score=30.48 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=72.4
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhccc---ccC-------CceehHHh-HHhC
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQS---SKE-------PGMYQGKD-SMYQ 516 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~---~~~-------~~~Y~V~~-v~~~ 516 (627)
+.+.+-|+|+|+. |+||.++|...+.-. .++++ .++-.++....++ .+. ++.-++.. +...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~---~v~E~--~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a 290 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT---SAWEY--GREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYA 290 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC---eeeec--cHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhc
Confidence 4678899999988 999999998753221 22222 2332222211000 001 11113333 3335
Q ss_pred CCcEEEecC--Cce-ecc-----cc-------CCCCceeEEEEcCCC--c-cc-CCCCCHHHHHHHHHHHHHHHHHh-cC
Q psy9827 517 GKDSMYQGK--ESM-YQG-----KD-------SMYQGKDSMYQGKDS--M-YQ-GKDIKKEVKIKLFEQSQKLEKVW-SH 576 (627)
Q Consensus 517 gk~ciLdi~--~~l-~~~-----~~-------~~~P~~~vIFI~pps--l-~~-~~~~~e~~~~~~~~~~~~~e~~~-~~ 576 (627)
.+.+++|.+ ..+ +.+ .+ ....+ ..+|+.+|. + .. ++...+++.+..+.+.. .+.| ..
T Consensus 291 ~~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ry-Dlvlll~pd~Pwv~DGlR~~~D~e~R~~f~~~l--~~~l~~~ 367 (399)
T PRK08099 291 NKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRF-DLTILLENNTPWVADGLRSLGSSVDRKRFQNLL--KEMLKEN 367 (399)
T ss_pred CCeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCC-CEEEEcCCCCCcccCCcccCCCHHHHHHHHHHH--HHHHHHc
Confidence 789999998 111 110 00 11112 145666555 2 11 12222333444444332 3333 23
Q ss_pred cccEEEEC-CCHHHHHHHHHHHHHhh
Q psy9827 577 VFTGTITL-SGVDVWYRKTRELIEKQ 601 (627)
Q Consensus 577 ~fd~vi~n-~~l~~~~~~l~~~i~~~ 601 (627)
-+.+++++ .+.++=+.+..++|++.
T Consensus 368 g~~~v~l~~g~~~eR~~~a~~~i~~~ 393 (399)
T PRK08099 368 NIEYVHVESPDYDKRYLRCVELVDQM 393 (399)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 46788885 78888888888777764
No 189
>PRK13808 adenylate kinase; Provisional
Probab=52.97 E-value=1.5e+02 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=16.7
Q ss_pred EEEeCcc---HHHHHHHHhhhC
Q psy9827 457 VVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~ 475 (627)
|||+||. |+|+..+|.+.|
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889998 999999998765
No 190
>PRK03839 putative kinase; Provisional
Probab=51.70 E-value=2.1e+02 Score=26.83 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.2
Q ss_pred eEEEeCcc---HHHHHHHHhhhC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.|+|+|++ |+|+.++|.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899998 999999998764
No 191
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=51.06 E-value=1.5e+02 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHhcCcccEEEECC--CHHHHHHHHHHHHHh
Q psy9827 571 EKVWSHVFTGTITLS--GVDVWYRKTRELIEK 600 (627)
Q Consensus 571 e~~~~~~fd~vi~n~--~l~~~~~~l~~~i~~ 600 (627)
+..|..+.|++|.++ +.++.+++|.+.+++
T Consensus 140 ~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 140 NPLYEEIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 445777788998866 578888888877753
No 192
>PRK13975 thymidylate kinase; Provisional
Probab=49.86 E-value=1.7e+02 Score=27.82 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=19.5
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCC
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDK 478 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~ 478 (627)
+-|+|.||. |+|+.+.|.+.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568999998 999999988876543
No 193
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=48.13 E-value=1.5e+02 Score=28.09 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=66.3
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccC-------CCCCCCCHHHHHHHHhcccccCCcee-------hHHhHHhCCC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAP-------RKFNFILWATIKDTAMYQSSKEPGMY-------QGKDSMYQGK 518 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~-------~~~~Fvs~e~f~~~i~~~~~~~~~~Y-------~V~~v~~~gk 518 (627)
-|.|+||+ ++|+..+|-+.+--.|.++ .++.=++-++|.+.. +.|.+ -..+.+. ..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~A------E~~p~iD~~iD~rq~e~a~-~~ 74 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYA------EEDPEIDKEIDRRQKELAK-EG 74 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHH------hcCchhhHHHHHHHHHHHH-cC
Confidence 36789998 9999988876543222221 001112333443322 22332 3333444 67
Q ss_pred cEEEecC--CceeccccCCCCceeEEEEcCCC-cccC---CCC--C-HHHHHHHHHHHHH----HHHHh------cCccc
Q psy9827 519 DSMYQGK--ESMYQGKDSMYQGKDSMYQGKDS-MYQG---KDI--K-KEVKIKLFEQSQK----LEKVW------SHVFT 579 (627)
Q Consensus 519 ~ciLdi~--~~l~~~~~~~~P~~~vIFI~pps-l~~~---~~~--~-e~~~~~~~~~~~~----~e~~~------~~~fd 579 (627)
.|||+-. +- ..+ ...-+ -||++.|= .+.. +|. + ++..+++.++-.. ...-| -..||
T Consensus 75 nvVlegrLA~W-i~k--~~adl--kI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyD 149 (179)
T COG1102 75 NVVLEGRLAGW-IVR--EYADL--KIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYD 149 (179)
T ss_pred CeEEhhhhHHH-Hhc--cccce--EEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeE
Confidence 7887765 22 221 22235 68888774 1111 111 1 2213333332211 11112 23588
Q ss_pred EEEECC--CHHHHHHHHHHHHHhhCC
Q psy9827 580 GTITLS--GVDVWYRKTRELIEKQQS 603 (627)
Q Consensus 580 ~vi~n~--~l~~~~~~l~~~i~~~~~ 603 (627)
.||... +.+..+.-|...|...+.
T Consensus 150 LVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 150 LVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred EEEecccCCHHHHHHHHHHHHHhhcc
Confidence 887654 677777777777776543
No 194
>KOG2921|consensus
Probab=46.35 E-value=17 Score=38.73 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCEEEEEeCCCChhhh-cCCCCCCEEEEECCEeCCCCCH
Q psy9827 71 KVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITR 109 (627)
Q Consensus 71 ~~gi~V~~V~~gspA~~-aGL~~GD~Il~VnG~~v~~~~~ 109 (627)
+.|+.|++|...||+.- -||.+||+|.++||.+|.+..+
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~d 258 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSD 258 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHH
Confidence 56899999999999853 3899999999999999987643
No 195
>PRK05541 adenylylsulfate kinase; Provisional
Probab=45.59 E-value=57 Score=30.63 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=19.2
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
....|+|.|++ |+|+.+.|.....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34588999998 9999998877643
No 196
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=45.05 E-value=1.2e+02 Score=31.67 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHH-HHHHHH---------hcccccCCcee-----hHHh
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWA-TIKDTA---------MYQSSKEPGMY-----QGKD 512 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e-~f~~~i---------~~~~~~~~~~Y-----~V~~ 512 (627)
+...+.|+|+|+. |+++-+.|.+..--.| +.-+ .+++.. .+|+ ..++ .+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~--------id~D~~i~~~~G~~i~ei~~~~G~---~~fr~~e~~~l~~ 198 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPF--------VELNREIEREAGLSVSEIFALYGQ---EGYRRLERRALER 198 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE--------EeHHHHHHHHhCCCHHHHHHHHCH---HHHHHHHHHHHHH
Confidence 4567889999987 9999999876542112 2111 111110 0111 1122 4555
Q ss_pred HHhCCCcEEEecC-Cce-eccc-cCC--CCceeEEEEcCCC--c-ccC-CC-------CCH---HHHHHHHHHHHHHHHH
Q psy9827 513 SMYQGKDSMYQGK-ESM-YQGK-DSM--YQGKDSMYQGKDS--M-YQG-KD-------IKK---EVKIKLFEQSQKLEKV 573 (627)
Q Consensus 513 v~~~gk~ciLdi~-~~l-~~~~-~~~--~P~~~vIFI~pps--l-~~~-~~-------~~e---~~~~~~~~~~~~~e~~ 573 (627)
.+.+...+|+... +.. ...+ ..+ ..+ +|||..|- . +.+ ++ ..+ ++++++.++- +.-
T Consensus 199 ll~~~~~~VI~~Ggg~v~~~~~~~~l~~~~~--~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R---~~~ 273 (309)
T PRK08154 199 LIAEHEEMVLATGGGIVSEPATFDLLLSHCY--TVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR---EPL 273 (309)
T ss_pred HHhhCCCEEEECCCchhCCHHHHHHHHhCCE--EEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH---HHH
Confidence 5555555676655 221 1000 011 235 89998775 1 111 11 111 2233333322 222
Q ss_pred hcCcccEEEECC--CHHHHHHHHHHHHHhh
Q psy9827 574 WSHVFTGTITLS--GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 574 ~~~~fd~vi~n~--~l~~~~~~l~~~i~~~ 601 (627)
| ..+|++|.++ +++++.+++..+|...
T Consensus 274 y-~~ad~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 274 Y-ARADAVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred H-HhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 3 3589998877 6799999999888653
No 197
>KOG3632|consensus
Probab=45.00 E-value=12 Score=44.14 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCCCCCCCCCccCcCCC---CCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHH
Q psy9827 318 PPTRGGPNNLLEDKSNL---VPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEE 387 (627)
Q Consensus 318 a~~~y~~~~~~~d~~~~---~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~ 387 (627)
|+||| ++.....+| -.|+-|..|+||.| +-.-|. +..-.++.+ .+.|+||+...+|+
T Consensus 1143 AlfDY---Dpl~MSpNpDAaEeELpFregqIikV-~GDkDa-------dgFY~GE~n--gr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1143 ALFDY---DPLQMSPNPDAAEEELPFREGQIIKV-LGDKDA-------DGFYMGELN--GRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeecc---CccccCCCCChhhhccccccCcEEEE-eccccc-------cceeecccc--cccccccccccccc
Confidence 78999 444333222 12334568999999 221111 111234444 68999999988775
No 198
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=42.08 E-value=1.8e+02 Score=27.55 Aligned_cols=23 Identities=17% Similarity=-0.041 Sum_probs=18.6
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
...|||.|+. |+|+.++|.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999998 9999999887643
No 199
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=39.81 E-value=1.4e+02 Score=29.48 Aligned_cols=91 Identities=10% Similarity=0.080 Sum_probs=58.8
Q ss_pred hHHhHHhCCCcEEEecC---Cce-eccccCCCCceeEEEEcCCCcccC-CCCCHHHHHHHHHHHHHHHHHhcCcc-cEEE
Q psy9827 509 QGKDSMYQGKDSMYQGK---ESM-YQGKDSMYQGKDSMYQGKDSMYQG-KDIKKEVKIKLFEQSQKLEKVWSHVF-TGTI 582 (627)
Q Consensus 509 ~V~~v~~~gk~ciLdi~---~~l-~~~~~~~~P~~~vIFI~ppsl~~~-~~~~e~~~~~~~~~~~~~e~~~~~~f-d~vi 582 (627)
+..+.++.|+.++.|+. ..+ ..+...+.++ +-+|.-|...++ +. ..+-..+..++..+.+.. +.++
T Consensus 61 ag~~AL~~g~~Iv~Dv~MV~aGI~~~~l~~~~~v--~c~i~d~~~~e~a~~------~g~Trsaa~~~~~~~~~~~~~iv 132 (210)
T COG2082 61 AGREALKAGCPIVVDVNMVAAGITRRRLPALNPV--ICYVDDPRVAELAKE------EGITRSAAGMRLAAERGEGGAIV 132 (210)
T ss_pred HHHHHHHcCCcEEEccHHHHHhcccccccccCcE--EEEecCcchHHHHHh------hCchHHHHHHHHHHHhcCCceEE
Confidence 77788899999999999 444 3333455577 888887764433 11 011222233444444433 5777
Q ss_pred ECCCHHHHHHHHHHHHHhhCCCCee
Q psy9827 583 TLSGVDVWYRKTRELIEKQQSSPVW 607 (627)
Q Consensus 583 ~n~~l~~~~~~l~~~i~~~~~~~~W 607 (627)
+-.|-..|+-+|.++++++.-+|.-
T Consensus 133 vIGNAPTAL~~l~elie~~~~~pal 157 (210)
T COG2082 133 VIGNAPTALFELLELIEEGGIKPAL 157 (210)
T ss_pred EEeCCHHHHHHHHHHHHccCCCCcE
Confidence 7788899999999999996555543
No 200
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.70 E-value=73 Score=32.62 Aligned_cols=131 Identities=10% Similarity=0.179 Sum_probs=79.6
Q ss_pred CCccccchhhccC------CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhcccccCCcee
Q psy9827 438 SKFPAYERVSLRH------PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMY 508 (627)
Q Consensus 438 ~~~~~Ye~V~~~~------~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~~~~~~~Y 508 (627)
..+|++|+.-+=+ ...+-.||++||. |+|-.-.++. |. +....|++.
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~-yR-----------------------N~~s~gHIi 160 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIG-YR-----------------------NKNSTGHII 160 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhc-cc-----------------------ccCCCCceE
Confidence 4577888765433 2456688889998 6664433332 11 111124444
Q ss_pred hHHhH---HhCCCcEEEec-----C-----Cce--eccccCCCCceeEEEEcCCCcccCCCCCHHHHHHHHHHHHHHHHH
Q psy9827 509 QGKDS---MYQGKDSMYQG-----K-----ESM--YQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKV 573 (627)
Q Consensus 509 ~V~~v---~~~gk~ciLdi-----~-----~~l--~~~~~~~~P~~~vIFI~ppsl~~~~~~~e~~~~~~~~~~~~~e~~ 573 (627)
+|++- +.+.+.||+.= | -+| -+ ...|- ||.|--- |..| .++.|... .+
T Consensus 161 TIEDPIEfih~h~~CIvTQREvGvDTesw~~AlkNtl---RQapD--vI~IGEv------Rsre-----tMeyAi~f-Ae 223 (375)
T COG5008 161 TIEDPIEFIHKHKRCIVTQREVGVDTESWEVALKNTL---RQAPD--VILIGEV------RSRE-----TMEYAIQF-AE 223 (375)
T ss_pred EecChHHHHhcccceeEEeeeeccchHHHHHHHHHHH---hcCCC--eEEEeec------ccHh-----HHHHHHHH-Hh
Confidence 44443 33678888642 2 234 23 34577 8887531 2222 34444332 34
Q ss_pred hcCcccEEEECCCHHHHHHHHHHHHHhhCCCCeeEe
Q psy9827 574 WSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWIS 609 (627)
Q Consensus 574 ~~~~fd~vi~n~~l~~~~~~l~~~i~~~~~~~~Wvp 609 (627)
-+|++=+++..++-.+|++.+..++-+++++-.|+-
T Consensus 224 TGHLcmaTLHAN~anQaleRIinffP~Err~Qll~D 259 (375)
T COG5008 224 TGHLCMATLHANNANQALERIINFFPEERREQLLID 259 (375)
T ss_pred cCceEEEEeccCCchHHHHHHHhhCcHHHhhhhHHH
Confidence 689988999989999999999999988888887763
No 201
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=38.82 E-value=2.2e+02 Score=27.13 Aligned_cols=19 Identities=5% Similarity=0.277 Sum_probs=16.1
Q ss_pred EEEeCcc---HHHHHHHHhhhC
Q psy9827 457 VVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~ 475 (627)
|.|+||+ |+|+.+.|....
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789998 999999997764
No 202
>PRK13947 shikimate kinase; Provisional
Probab=37.69 E-value=3.3e+02 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=17.6
Q ss_pred eEEEeCcc---HHHHHHHHhhhCC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
.|+|+||+ |+++.++|-+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 58999988 9999999987643
No 203
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=37.09 E-value=3.8e+02 Score=25.66 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy9827 584 LSGVDVWYRKTRELIEK 600 (627)
Q Consensus 584 n~~l~~~~~~l~~~i~~ 600 (627)
|.+.+++..++.++|..
T Consensus 140 ~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 140 NRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCHHHHHHHHHHHHcc
Confidence 66899999999999984
No 204
>KOG2070|consensus
Probab=36.28 E-value=23 Score=38.72 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=38.0
Q ss_pred CceeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHH
Q psy9827 312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEE 387 (627)
Q Consensus 312 ~~~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~ 387 (627)
+.+-|||-|.+ .-.+. -|+.|.+|||+.|. -+.+- -||..-.. ...|..||..-.|-
T Consensus 16 ~pLvvrAkf~F---~gsNn-----DELsf~KgDvItVT-q~eeG----GWWEGTln------g~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 16 NPLVVRAKFNF---QGSNN-----DELSFSKGDVITVT-QVEEG----GWWEGTLN------GRTGWFPSNYVREI 72 (661)
T ss_pred CceEEEEEeec---ccCCC-----ceeccccCCEEEEE-EeccC----cceecccc------CccCccchHHHHHH
Confidence 46889999888 22221 14467799999983 33332 69998553 37889999876653
No 205
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=35.42 E-value=57 Score=34.85 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCEEEEeCceeCCCCCHHHHHHHHHcCC-Ce---EEEEEEe
Q psy9827 233 NASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EK---LSLTIRR 280 (627)
Q Consensus 233 ~~~a~~~~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~-~~---v~l~V~r 280 (627)
.+++..++++.||.|+++|+..+. +.++....+.... .. +.+.+.|
T Consensus 139 ~s~a~~a~l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 139 KSAAALAGLRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred CCHHHHcCCCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 457778899999999999999999 8888877777533 33 6777777
No 206
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=33.35 E-value=1.1e+02 Score=28.81 Aligned_cols=43 Identities=5% Similarity=-0.123 Sum_probs=27.3
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhc
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMY 499 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~ 499 (627)
.++|+||+ |+++..+|...+.....+ .....+..++|.+.++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~-iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLY-IATAQPFDDEMAARIAH 48 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEe-CcCCCCChHHHHHHHHH
Confidence 47889998 999999998775321111 00112457788777754
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.81 E-value=14 Score=33.31 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.1
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCC
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDK 478 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~ 478 (627)
||+|.||+ |+++.+.|.+.....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 79999999 999999988765433
No 208
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=32.04 E-value=2.6e+02 Score=31.82 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCC-HHHHHHHH---------hcccccCCcee-----hHHh
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFIL-WATIKDTA---------MYQSSKEPGMY-----QGKD 512 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs-~e~f~~~i---------~~~~~~~~~~Y-----~V~~ 512 (627)
|.++.+|||+|+. |+|+-+.|-+..-- .|++ .+.+++.. ++|+. ++. .+++
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~--------~fiD~D~~ie~~~g~si~eif~~~Ge~---~FR~~E~~~l~~ 71 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRL--------PFADADVEIEREIGMSIPSYFEEYGEP---AFREVEADVVAD 71 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCC--------CEEEchHHHHHHHCcCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 5677899999987 99999988765311 1332 11222211 11211 111 4455
Q ss_pred HHhCCCcEEEecC-Cce-eccccC-------CCCceeEEEEcCCC--cccC----------CCCCHHHHHHHHHHHHHHH
Q psy9827 513 SMYQGKDSMYQGK-ESM-YQGKDS-------MYQGKDSMYQGKDS--MYQG----------KDIKKEVKIKLFEQSQKLE 571 (627)
Q Consensus 513 v~~~gk~ciLdi~-~~l-~~~~~~-------~~P~~~vIFI~pps--l~~~----------~~~~e~~~~~~~~~~~~~e 571 (627)
++.+ +.||+-.. +.. ...+.+ -.-+ +||+.-+- +.++ +....+.+++++++- +
T Consensus 72 ~~~~-~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~--vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R---~ 145 (542)
T PRK14021 72 MLED-FDGIFSLGGGAPMTPSTQHALASYIAHGGR--VVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQR---D 145 (542)
T ss_pred HHhc-CCeEEECCCchhCCHHHHHHHHHHHhcCCE--EEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHH---H
Confidence 4433 45666555 221 110001 1124 78887653 1111 111123355555443 4
Q ss_pred HHhcCcccEEEECC--CHHHHHHHHHHHHHh
Q psy9827 572 KVWSHVFTGTITLS--GVDVWYRKTRELIEK 600 (627)
Q Consensus 572 ~~~~~~fd~vi~n~--~l~~~~~~l~~~i~~ 600 (627)
.-|....|++|.++ +.+++++++.+.+..
T Consensus 146 ~~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 146 PVFRQVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 45777788888865 688999998888864
No 209
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=31.28 E-value=2.7e+02 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.0
Q ss_pred EEECCCHHHHHHHHHHHHHh
Q psy9827 581 TITLSGVDVWYRKTRELIEK 600 (627)
Q Consensus 581 vi~n~~l~~~~~~l~~~i~~ 600 (627)
+|.|.|+|++.+.+.++|.+
T Consensus 271 ~I~n~~i~~s~~~~~~~i~~ 290 (301)
T PRK04220 271 VIENISIEETVDKILEIITE 290 (301)
T ss_pred eecCccHHHHHHHHHHHHHH
Confidence 47789999999999988764
No 210
>COG4639 Predicted kinase [General function prediction only]
Probab=30.79 E-value=96 Score=29.15 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=39.5
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHH---hcccccCC-------cee-hHHhHHhCCCc
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTA---MYQSSKEP-------GMY-QGKDSMYQGKD 519 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i---~~~~~~~~-------~~Y-~V~~v~~~gk~ 519 (627)
.+.|||.|++ |+|..+.....++ -++-+.|...+ ...+...+ .+| ..+.-+++||+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~~----------~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~ 71 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQNY----------VLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKF 71 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCcc----------eecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCe
Confidence 4689999999 9998887654432 23344454433 11111112 233 77788899999
Q ss_pred EEEecC
Q psy9827 520 SMYQGK 525 (627)
Q Consensus 520 ciLdi~ 525 (627)
.|+|-.
T Consensus 72 tiidAt 77 (168)
T COG4639 72 TIIDAT 77 (168)
T ss_pred EEEEcc
Confidence 999998
No 211
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=30.22 E-value=42 Score=35.01 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.9
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
.+.|+|+||. |+.|.-+|.+.+-
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~ 29 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA 29 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3579999999 9999999987743
No 212
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=29.86 E-value=1.1e+02 Score=29.19 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=38.3
Q ss_pred ceEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhc-----cccc----------------CCcee-h
Q psy9827 455 RPVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMY-----QSSK----------------EPGMY-Q 509 (627)
Q Consensus 455 RpvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~-----~~~~----------------~~~~Y-~ 509 (627)
|-|+|=||| |++|.+.|.+..++-|.. ++-+.|.+++-- +..+ ...+| +
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~------l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLH------LSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEE------EEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEE------EecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH
Confidence 568888998 999999999888765432 234445553210 0000 01122 8
Q ss_pred HHhHHhCCCcEEEe
Q psy9827 510 GKDSMYQGKDSMYQ 523 (627)
Q Consensus 510 V~~v~~~gk~ciLd 523 (627)
|...++.|.++|+|
T Consensus 76 iaa~a~aG~~VIvD 89 (174)
T PF07931_consen 76 IAAMARAGNNVIVD 89 (174)
T ss_dssp HHHHHHTT-EEEEE
T ss_pred HHHHHhCCCCEEEe
Confidence 99999999999999
No 213
>PRK13948 shikimate kinase; Provisional
Probab=29.77 E-value=4.4e+02 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=19.3
Q ss_pred CCceEEEeCcc---HHHHHHHHhhhC
Q psy9827 453 FIRPVVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 453 ~~RpvVl~Gp~---k~~l~~~Ll~~~ 475 (627)
.++.|+|+|+. |+|+-+.|-+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999987 999999887654
No 214
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=29.00 E-value=98 Score=30.33 Aligned_cols=81 Identities=6% Similarity=-0.020 Sum_probs=48.1
Q ss_pred CCcEEEecC---CceeccccCCCCceeEEEEcCCC---cc---cCCCCCHHHHHHHHHHHHHHHHHhcCcccEEEECC--
Q psy9827 517 GKDSMYQGK---ESMYQGKDSMYQGKDSMYQGKDS---MY---QGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLS-- 585 (627)
Q Consensus 517 gk~ciLdi~---~~l~~~~~~~~P~~~vIFI~pps---l~---~~~~~~e~~~~~~~~~~~~~e~~~~~~fd~vi~n~-- 585 (627)
.+.|++|+- +.-.. ...++-. +|+|..|- ++ ++...+++++..+++.-.- +.+....-|+||.|+
T Consensus 108 ~~~vv~eipLL~E~~~~-~~~~~D~--vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~-~eek~~~aD~VI~N~g~ 183 (204)
T PRK14733 108 TVMTIVDIPLLGPYNFR-HYDYLKK--VIVIKADLETRIRRLMERDGKNRQQAVAFINLQIS-DKEREKIADFVIDNTEL 183 (204)
T ss_pred CCeEEEEechhhhccCc-hhhhCCE--EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-HHHHHHhCCEEEECcCC
Confidence 357888885 22100 0023445 78887775 22 1234466656655533222 334566679999986
Q ss_pred CHHHHHHHHHHHHHhh
Q psy9827 586 GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 586 ~l~~~~~~l~~~i~~~ 601 (627)
+++++-.++..+++..
T Consensus 184 ~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 184 TDQELESKLITTINEI 199 (204)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5788999999888765
No 215
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=28.91 E-value=3.3e+02 Score=25.98 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.1
Q ss_pred CceEEEeCcc---HHHHHHHHhhh
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKD 474 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~ 474 (627)
.++|||+|+. |+||-+.|-+.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHH
Confidence 4689999998 99999998765
No 216
>KOG4225|consensus
Probab=28.58 E-value=35 Score=36.88 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=34.0
Q ss_pred eCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827 316 VQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR 384 (627)
Q Consensus 316 vra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~ 384 (627)
-||.|+|-+ -..+|+-|.+|||+.| ..+-|. ||....+- .+.|+.|-...
T Consensus 233 aralf~F~~--------qt~kEL~~~kGDIVyI-~rkvD~----nWyeGEhh------Gr~GifP~sYv 282 (489)
T KOG4225|consen 233 ARALFDFEA--------QTPKELPFNKGDIVYI-LRKVDQ----NWYEGEHH------GRVGIFPASYV 282 (489)
T ss_pred hhheecccc--------CCccccccCCCCEEEE-EeeccC----ceeeeeec------ceecceechhe
Confidence 566676622 2346777889999999 666554 78776443 38899998654
No 217
>PRK14526 adenylate kinase; Provisional
Probab=28.16 E-value=5.8e+02 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.6
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
|+|+||. |+|+.+.|.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7889998 9999998876653
No 218
>PLN02459 probable adenylate kinase
Probab=27.55 E-value=6.8e+02 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=16.9
Q ss_pred EEEeCcc---HHHHHHHHhhhCC
Q psy9827 457 VVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~p 476 (627)
+||+||. |+|+..+|.+.+.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7888998 9999999988653
No 219
>PRK08118 topology modulation protein; Reviewed
Probab=27.43 E-value=1.9e+02 Score=27.09 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.4
Q ss_pred EEEeCcc---HHHHHHHHhhhC
Q psy9827 457 VVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~ 475 (627)
|+|+||+ |+|+.++|.+..
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889988 999999998763
No 220
>KOG0792|consensus
Probab=26.48 E-value=27 Score=41.83 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=50.9
Q ss_pred CCceeEEEEccCC-------CCEEEEEeC-------------CCChhhhcC--CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy9827 59 EGSVGIRLTGGNK-------VGIFVTAVQ-------------PGSPASLQG--LQPGDKILKVNDMDMKGITREEAVLFL 116 (627)
Q Consensus 59 ~g~lG~~i~g~~~-------~gi~V~~V~-------------~gspA~~aG--L~~GD~Il~VnG~~v~~~~~~~~~~~l 116 (627)
.|.+||-+.|+.+ .+..++.|. |+++|+... +-.||+++.|||.++....+.+.+.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 4679999888732 345667777 999998887 889999999999999999999999887
Q ss_pred hcCC
Q psy9827 117 LSLQ 120 (627)
Q Consensus 117 ~~~g 120 (627)
+.+.
T Consensus 795 rs~r 798 (1144)
T KOG0792|consen 795 RSPR 798 (1144)
T ss_pred hhhh
Confidence 7543
No 221
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=26.24 E-value=58 Score=33.41 Aligned_cols=136 Identities=9% Similarity=0.007 Sum_probs=57.5
Q ss_pred eEEEeCcc---HHHHHHHHhhhCCCCcccCCCCCCCCHHHHHHHHhccc--------ccCCcee-hHHhHHhCCCcEEEe
Q psy9827 456 PVVLFGPV---ADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQS--------SKEPGMY-QGKDSMYQGKDSMYQ 523 (627)
Q Consensus 456 pvVl~Gp~---k~~l~~~Ll~~~p~~f~~~~~~~Fvs~e~f~~~i~~~~--------~~~~~~Y-~V~~v~~~gk~ciLd 523 (627)
.|||+|-. |+++.+.|.+.+.+ ....-+.++.+.+. +.... ...+.++ +|++.+.++..+|+|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~---~~~~v~~i~~~~~~--~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D 77 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE---KGKEVVIISDDSLG--IDRNDYADSKKEKEARGSLKSAVERALSKDTIVILD 77 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH---TT--EEEE-THHHH---TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh---cCCEEEEEcccccc--cchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEe
Confidence 57888965 99999999875443 00111233333332 11111 1123344 888888888888888
Q ss_pred cC---Cc----e--eccccCCCCceeEEEEcCCCcc--cC-------CCCCHHHHHHHHHHHHHHH-HHhcCcccEEEEC
Q psy9827 524 GK---ES----M--YQGKDSMYQGKDSMYQGKDSMY--QG-------KDIKKEVKIKLFEQSQKLE-KVWSHVFTGTITL 584 (627)
Q Consensus 524 i~---~~----l--~~~~~~~~P~~~vIFI~ppsl~--~~-------~~~~e~~~~~~~~~~~~~e-~~~~~~fd~vi~n 584 (627)
=. .. | .+|....-=. +||+..|--. ++ .+..++.+.+|..+-+.=. ..-++....+|.+
T Consensus 78 d~nYiKg~RYelyclAr~~~~~~c--~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~ 155 (270)
T PF08433_consen 78 DNNYIKGMRYELYCLARAYGTTFC--VIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS 155 (270)
T ss_dssp S---SHHHHHHHHHHHHHTT-EEE--EEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred CCchHHHHHHHHHHHHHHcCCCEE--EEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence 66 21 1 2221222124 6888887511 11 1244565666666554311 1122334456664
Q ss_pred CCHHHHHHHHHHHH
Q psy9827 585 SGVDVWYRKTRELI 598 (627)
Q Consensus 585 ~~l~~~~~~l~~~i 598 (627)
++-+..+++|.+.|
T Consensus 156 ~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 156 SDEELPLEEIWNAL 169 (270)
T ss_dssp TTS---HHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 44444455555555
No 222
>PRK01184 hypothetical protein; Provisional
Probab=26.03 E-value=1.9e+02 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.5
Q ss_pred CcccEEEECC-CHHHHHHHHHHHHHhh
Q psy9827 576 HVFTGTITLS-GVDVWYRKTRELIEKQ 601 (627)
Q Consensus 576 ~~fd~vi~n~-~l~~~~~~l~~~i~~~ 601 (627)
..-|++|.|+ ++++++.+++.++...
T Consensus 153 ~~ad~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 153 ALADYMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HhcCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5568999987 8999999999988754
No 223
>PLN02748 tRNA dimethylallyltransferase
Probab=24.72 E-value=69 Score=35.62 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCCceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 452 GFIRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 452 ~~~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
...+.|+|+||. |++|...|...+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455679999999 9999999988764
No 224
>PRK00098 GTPase RsgA; Reviewed
Probab=23.95 E-value=1.6e+02 Score=30.54 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.5
Q ss_pred CceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 454 IRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 454 ~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
.+.++|+|++ |++|.+.|+....
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4689999999 9999999987543
No 225
>KOG0197|consensus
Probab=22.09 E-value=33 Score=37.88 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCCCCCCCc-ccccccCCCCCCCCcCccccccCCCCccceeeeccChhhHHH
Q psy9827 336 PRAGRSRNPL-LDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEE 387 (627)
Q Consensus 336 ~~~gl~~gdi-l~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~~e~ 387 (627)
.++.|.+||. +++ ....+. .||.|+... ....|+|||..-++.
T Consensus 26 ~dLsf~~Gd~~~~~-~~~~~~----~Ww~ar~~~----~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 26 EDLSFRKGDVVLIL-LETTNG----DWWRARSLQ----LGQEGYIPSNYVARN 69 (468)
T ss_pred cccccccCceEEEe-eccCCh----hHHHHHHhh----cCCCCcCcCceeecc
Confidence 4566779999 888 444443 899998764 257889999876653
No 226
>PLN02165 adenylate isopentenyltransferase
Probab=21.93 E-value=58 Score=34.50 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.1
Q ss_pred CCCCceEEEeCcc---HHHHHHHHhhhCC
Q psy9827 451 PGFIRPVVLFGPV---ADLARDKLLKDFP 476 (627)
Q Consensus 451 ~~~~RpvVl~Gp~---k~~l~~~Ll~~~p 476 (627)
....+.|+|+||. |++|...|.....
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 3456689999999 9999999887754
No 227
>KOG0162|consensus
Probab=21.61 E-value=61 Score=37.34 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=26.2
Q ss_pred CCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 336 PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 336 ~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
-|+.|..|||++| +..|-. -||+++. + .+.|++|...
T Consensus 1066 dEls~~~~diIei-~~edpS----GWw~gk~-~-----~keG~~P~~Y 1102 (1106)
T KOG0162|consen 1066 DELSFKKGDIIEI-MREDPS----GWWLGKL-N-----GKEGLFPGNY 1102 (1106)
T ss_pred ccccccCCCEEEE-eccCCC----cchhhcc-C-----Cccccccccc
Confidence 4667889999998 443322 6999963 2 4788999753
No 228
>KOG2856|consensus
Probab=21.48 E-value=55 Score=34.58 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=37.0
Q ss_pred eeeCCCCCCCCCCCccCcCCCCCCCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChhh
Q psy9827 314 LYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKAR 384 (627)
Q Consensus 314 ~yvra~~~y~~~~~~~d~~~~~~~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~~ 384 (627)
+.|||++|| .+.+. -++.|..||.|.. +...|+ .-|.--+++. .+.||-|-..-
T Consensus 415 v~vraLYDY---~gqE~-----DElsfkaGd~l~k-l~eeDe----qGWC~Grl~~----G~vGLyPAnYV 468 (472)
T KOG2856|consen 415 VRVRALYDY---AGQEG-----DELSFKAGDELEK-LEEEDE----QGWCKGRLDS----GRVGLYPANYV 468 (472)
T ss_pred eeEEeeecc---Ccccc-----cchhhccccHhhh-cCCccc----cccccccccC----Ccccccchhhh
Confidence 568899999 44331 2556779999998 777776 4455445432 48999997643
No 229
>PRK02496 adk adenylate kinase; Provisional
Probab=21.33 E-value=6.7e+02 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=16.4
Q ss_pred EEEeCcc---HHHHHHHHhhhC
Q psy9827 457 VVLFGPV---ADLARDKLLKDF 475 (627)
Q Consensus 457 vVl~Gp~---k~~l~~~Ll~~~ 475 (627)
++|+||+ |+|+.+.|.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889998 999999987764
No 230
>KOG0515|consensus
Probab=20.84 E-value=46 Score=36.84 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=26.0
Q ss_pred CCCCCCCCcccccccCCCCCCCCcCccccccCCCCccceeeeccChh
Q psy9827 337 RAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKA 383 (627)
Q Consensus 337 ~~gl~~gdil~v~~~~~d~~~~~~wwqa~~~~~~~~~~~~GlIPs~~ 383 (627)
|+.|..||-|-| +-.+| +...+||-|+.- .+.|.+|-..
T Consensus 699 ELsf~eGd~lTv-irr~d-~~eteWWwa~ln------g~eGyVPRny 737 (752)
T KOG0515|consen 699 ELSFDEGDELTV-IRRDD-EVETEWWWARLN------GEEGYVPRNY 737 (752)
T ss_pred cccccCCceeEE-EecCC-cchhhhhhHhhc------Ccccccchhh
Confidence 456678998888 66665 355689998632 2566777653
Done!