RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9827
(627 letters)
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 170 bits (430), Expect = 4e-45
Identities = 121/716 (16%), Positives = 224/716 (31%), Gaps = 192/716 (26%)
Query: 38 SPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG-------NKVGIFVTAVQPGSPASLQG 89
+P + E + IT ++ S +G + GG + IF+T + PG A+ G
Sbjct: 47 APGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDG 106
Query: 90 -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA-----SQRG 143
L+ D IL VN++D++ +T AV L + L V R+ E V+ +G
Sbjct: 107 RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 166
Query: 144 DSFHI--------------------------------KVNDRIMSANGLSLENVEYGTAV 171
F I ++ D+I++ N + LE+V + AV
Sbjct: 167 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 226
Query: 172 QVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS------------------------ 207
L+++ V LKV + S + S S
Sbjct: 227 AALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPT 286
Query: 208 ----------------------------RKKDDFGIIL-----GNKIFVKEVTHRLDNNA 234
R G + G IF+ +
Sbjct: 287 SPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILA---GGP 343
Query: 235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
+ + +L +GD +L +N S ++A + ++ + +++ + +P Y
Sbjct: 344 ADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY---KPEEYSRFEAK 400
Query: 295 PGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLD 354
+ N S + + + + +S D
Sbjct: 401 IHD----LREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGF-LSQALSFRFGD 455
Query: 355 RPVSPINNSMDS-------LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRG 407
V + ++ D + +++ G IP+K R E
Sbjct: 456 --VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERRE------------------ 495
Query: 408 SFFKRRRNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLA 467
+ R + S S S+ D +YE V+ + RP+++ GP D A
Sbjct: 496 --WSRLKAKDWGSSSGSQGREDS---------VLSYETVTQMEVHYARPIIILGPTKDRA 544
Query: 468 RDKLLKDFPDKFSAPRKFNFILWATIKDTAMYQSSKEPGMYQGKDSM----YQGKDSMYQ 523
D LL +FPDKF + + T ++ ++ M K
Sbjct: 545 NDDLLSEFPDKFGSC-----VPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAG 599
Query: 524 GKESMYQG------KDSMYQGK----DSMYQG---------------------KDSMYQG 552
S G ++ QGK D ++ +
Sbjct: 600 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 659
Query: 553 KDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
K I +E K F+++ KLE+ ++ F+ + + Y K + +IE +W+
Sbjct: 660 KRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWV 715
Score = 88.4 bits (218), Expect = 2e-18
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 36 PGSPDLFSIFFVEPDPRFITFQKEG-SVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQP 92
P + DL + +PR I + +G + GG + GIF++ + G PA L G L+
Sbjct: 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRK 352
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
GD+IL VN +D++ + E+A + L + + +I Q + +EY
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 397
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 129 bits (325), Expect = 2e-33
Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 22/258 (8%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRG----SFFKRRRNSHRRSKS 422
+GR+ +E ++GIIPN++RAE+LA+ + + S G + F R R R +K
Sbjct: 54 MGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKK 113
Query: 423 LSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP 482
++ +D+ ++P YERV LR F RPVV+ GPVAD+A KL + PD+F
Sbjct: 114 TTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIA 173
Query: 483 RKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGK----DSMYQGKESMYQGKDS---M 535
T+ T + + + K D E + + +
Sbjct: 174 E--------TVSRTDSPSKIIKLDT--VRVIAEKDKHALLDVTPSAIERLNYVQYYPIVV 223
Query: 536 YQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKT 594
+ +S K + +L+ Q+QKL K SH+FT TI L D WY++
Sbjct: 224 FFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQEL 283
Query: 595 RELIEKQQSSPVWISETK 612
+ +I +QQ+ P+W +E +
Sbjct: 284 KAIIREQQTRPIWTAEDQ 301
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 121 bits (305), Expect = 8e-33
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 48 EPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
P + + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D I
Sbjct: 27 RPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 86
Query: 108 TREEAVLFLLSLQ--DQIHLIVQNRRDEYEHVVASQRG 143
REEAVLFLL L +++ ++ Q ++D Y +V S G
Sbjct: 87 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124
Score = 44.0 bits (104), Expect = 1e-05
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRR 188
A++ G ++ D+I+ N + N+ AV L D G VT+ +++
Sbjct: 63 PAAKEG----LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111
Score = 37.9 bits (88), Expect = 0.002
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 172 QVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK---IFVKEVT 227
SG T L + + P + ++ RK D G+ + G IFV V
Sbjct: 7 HHHHSSGGTENLYFQGHM--ILRPSMKLVKF-----RKGDSVGLRLAGGNDVGIFVAGVL 59
Query: 228 HRLDNNASP-GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
SP L EGD +L++NN + +EA + + +TI + +
Sbjct: 60 E-----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ-KKKD 113
Query: 287 AYQE 290
Y+
Sbjct: 114 VYRR 117
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 127 bits (319), Expect = 5e-32
Identities = 113/440 (25%), Positives = 175/440 (39%), Gaps = 79/440 (17%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQ-LAEGDVLLKIN 251
P V+ K + GN IFV V SP + L EGD +L++N
Sbjct: 6 LRPSMKLVKFRKG-DSVGLRLAGGNDVGIFVAGVLE-----DSPAAKEGLEEGDQILRVN 59
Query: 252 NHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSS 311
N + +EA + + +TI + + Y+ ++ Y+
Sbjct: 60 NVDFTNIIREEAVLFLLDLPKGEEVTILAQ-KKKDVYRRIVESDVGDSFYIRTHFEY--- 115
Query: 312 QNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDS----- 366
+ + G L + ++ R V + N
Sbjct: 116 -----EKESPYG----------------------LSFNKGEVFRVVDTLYNGKLGSWLAI 148
Query: 367 -LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSK 425
+G+N++EV++GIIPNK RAE+LA+ Q+ K R R SK +
Sbjct: 149 RIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADF-----WRFRGLRSSKRNLR 203
Query: 426 DHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAP--- 482
+D+ +KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD +
Sbjct: 204 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE 263
Query: 483 --------RKFNFILWATIKDTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDS 534
R I TIK Q K ++ D + + +
Sbjct: 264 PRDAGTDQRSSGIIRLHTIKQIID----------QDKHALL---DVTPNAVDRLNYAQWY 310
Query: 535 ---MYQGKDSMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVW 590
++ DS K + ++ KL+E+S KL K H+FT TI L S D W
Sbjct: 311 PIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW 370
Query: 591 YRKTRELIEKQQSSPVWISE 610
Y +E I++QQ+ VW+SE
Sbjct: 371 YGALKEAIQQQQNQLVWVSE 390
Score = 101 bits (253), Expect = 2e-23
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 46 FVEPDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+ P + + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D
Sbjct: 5 ILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64
Query: 106 GITREEAVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
I REEAVLFLL L + + Q ++D Y +V S GDSF+I+ + + L
Sbjct: 65 NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL- 123
Query: 164 NVEYGTAVQVL 174
+ G +V+
Sbjct: 124 SFNKGEVFRVV 134
Score = 32.1 bits (72), Expect = 0.59
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 19/126 (15%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLK-VRRRIVLPASPEPQTLRVQLSK 206
++ D+I+ N + N+ AV L D + + ++ ++
Sbjct: 49 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFY 108
Query: 207 SRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL 266
R ++ SP +G+V ++ + A ++
Sbjct: 109 IRTHFEY------------------EKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150
Query: 267 IDSSKE 272
+ KE
Sbjct: 151 GKNHKE 156
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 118 bits (298), Expect = 6e-32
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 47 VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+PR + QK +GI + G K GI+V+ V GS A GL+ GD++L+ N ++++
Sbjct: 16 YVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR 75
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
T ++A L + D I ++ Q ++ S+ G S
Sbjct: 76 SATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115
Score = 50.2 bits (120), Expect = 8e-08
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+A Q G ++ D+++ NG++L + A ++ T+T+ +
Sbjct: 54 IAHQAG----LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYN 100
Score = 44.8 bits (106), Expect = 6e-06
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 178 GSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNAS 235
GS+ + RR P EP+ V++ K + I+ G K I+V +VT +
Sbjct: 1 GSSGSSGGERRKDRPYVEEPRH--VKVQKGSEPLGISIVSGEKGGIYVSKVTV----GSI 54
Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
L GD LL+ N + ++AR +I + +++ + P +Q S+
Sbjct: 55 AHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY---NPHVHQLSSH 109
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 124 bits (312), Expect = 1e-30
Identities = 106/433 (24%), Positives = 172/433 (39%), Gaps = 68/433 (15%)
Query: 199 TLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD 256
++++ + + GN IFV V ++ L EGD +L++NN
Sbjct: 1 SMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFT 56
Query: 257 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPL--STNYSSQNL 314
+ +EA + + +TI + + Y+ ++ Y+ S L
Sbjct: 57 NIIREEAVLFLLDLPKGEEVTILAQ-KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL 115
Query: 315 YVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEV 374
+ L + A R +G+N++EV
Sbjct: 116 SFNKGEVFRVVDTLYNGKLGSWLAIR--------------------------IGKNHKEV 149
Query: 375 QKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFG 434
++GIIPNK RAE+LA+ Q+ K R R SK + +D+
Sbjct: 150 ERGIIPNKNRAEQLASVQYTLPKTAGGDRADF-----WRFRGLRSSKRNLRKSREDLSAQ 204
Query: 435 DSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIK 494
+KFPAYERV LR GF+RPV +FGP+AD+AR+KL ++ PD + +
Sbjct: 205 PVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKS---------- 254
Query: 495 DTAMYQSSKEPGMYQGKDSMYQGKDSMYQGKESMY----QGKDSMYQGK----------D 540
+ + G ++ K + Q K ++ D + + D
Sbjct: 255 ---EPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPD 311
Query: 541 SMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITL-SGVDVWYRKTRELIE 599
S K + ++ KL+E+S KL K H+FT TI L S D WY +E I+
Sbjct: 312 SKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQ 371
Query: 600 KQQSSPVWISETK 612
+QQ+ VW+SE K
Sbjct: 372 QQQNQLVWVSEGK 384
Score = 95.4 bits (236), Expect = 5e-21
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 52 RFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+ + F+K SVG+RL GGN VGIFV V SPA+ +GL+ GD+IL+VN++D I REE
Sbjct: 3 KLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62
Query: 112 AVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGT 169
AVLFLL L + + Q ++D Y +V S GDSF+I+ + + L + G
Sbjct: 63 AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL-SFNKGE 121
Query: 170 AVQVL 174
+V+
Sbjct: 122 VFRVV 126
Score = 29.9 bits (66), Expect = 3.1
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
++ D+I+ N + N+ AV L D + +
Sbjct: 41 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 78
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 112 bits (283), Expect = 3e-29
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 50 DPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
DPR + K+ G +G+RL + GIFV VQ SPASL GL+ GD++L++N + G
Sbjct: 4 DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 108 TREEAVLFLL-SLQDQIHLIVQ---------NRRDEYEHVVASQRGDSFH---------- 147
+ ++A L + ++I + ++ +D HV +
Sbjct: 63 SSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAAR 122
Query: 148 --IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
+ I NG ++ ++ +L SG+ VT+ +
Sbjct: 123 NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
Score = 59.5 bits (144), Expect = 1e-10
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS-GSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
++ D+++ NG + A +VL+ + G +T+ +R R P + + K
Sbjct: 45 LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR--------PFERTITMHK 96
Query: 207 SRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKL 266
G I N + ++S + L + +IN G+ + +
Sbjct: 97 DSTG-HVGFIFKN-----GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 150
Query: 267 IDSSKEKLSLTI 278
+ +S +++TI
Sbjct: 151 LSTSGTVVTITI 162
Score = 39.8 bits (93), Expect = 8e-04
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 202 VQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGT----HQLAEGDVLLKINNHP 254
V L K + G+ L N IFV+ V + L GD +L+IN
Sbjct: 8 VILCK-DQDGKIGLRLKSIDNGIFVQLVQ--------ANSPASLVGLRFGDQVLQINGEN 58
Query: 255 TDGMSVKEARKLI-DSSKEKLSLTIRR 280
G S +A K++ + EK+++TIR
Sbjct: 59 CAGWSSDKAHKVLKQAFGEKITMTIRD 85
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 106 bits (267), Expect = 1e-27
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 37 GSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPG 93
GSP+ + +PR I + +G + GG + GIF++ + G PA L G L+ G
Sbjct: 1 GSPEFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKG 60
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
D+IL VN +D++ + E+A + L + + +I Q + +EY A+ R DS
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
Score = 50.5 bits (121), Expect = 5e-08
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A G ++ D+I+S NG+ L N + A L+++G TVT+ + +
Sbjct: 50 PADLSG---ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 97
Score = 42.8 bits (101), Expect = 3e-05
Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
+ R+ + + F I+ G IF+ + L + + +L +GD +L +
Sbjct: 10 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFI---LAGGPADLSGELRKGDQILSV 66
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
N S ++A + ++ + +++ + + + ++ ++ +
Sbjct: 67 NGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRV 110
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 105 bits (265), Expect = 2e-26
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 46/187 (24%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
+ IT ++ +G + GG + IF+T + PG A+ G L+ D IL
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 99 VNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ-----RGDSFHI----- 148
VN++D++ +T AV L + L V R+ E V+ + +G F I
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 122
Query: 149 ---------------------------KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTV 181
++ D+I++ N + LE+V + AV L+++ V
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182
Query: 182 TLKVRRR 188
LKV +
Sbjct: 183 YLKVAKP 189
Score = 96.7 bits (241), Expect = 3e-23
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
++VND I+ N + + V + AV+ L+++GS V L V RR P + + ++L K
Sbjct: 54 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP----PAEKVMEIKLIKG 109
Query: 208 RKKDDFGIILGNK---------IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGM 258
K F I G I+V ++ A+ +L GD +L +N+ + +
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIE---GGAAHKDGRLQIGDKILAVNSVGLEDV 166
Query: 259 SVKEARKLIDSSKEKLSLTIRREVPRPTA 287
++A + ++ + + L + + T
Sbjct: 167 MHEDAVAALKNTYDVVYLKVAKPSNAETM 195
Score = 49.0 bits (117), Expect = 7e-07
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGN---------KIFVKEVTHRLDNNASPGTHQLAEG 244
S + + L + F I G IF+ ++ + A+ +L
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKI---IPGGAAAQDGRLRVN 57
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 298
D +L +N ++ A + + + + L + R P E + G +
Sbjct: 58 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 104 bits (261), Expect = 7e-26
Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 49/196 (25%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
+ K+ ++G+ ++GG V+ ++ G A+ L GD I VN +
Sbjct: 5 FKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHI-------------- 148
++ +E + L ++ +++ L V+ +S + +
Sbjct: 65 NLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIR 124
Query: 149 ------------------------------KVNDRIMSANGLSLENVEYGTAVQVLRDSG 178
K DR++S +G+ L + A+ +L+ G
Sbjct: 125 GGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184
Query: 179 STVTLKVRRRIVLPAS 194
TL + + + S
Sbjct: 185 QEATLLIEYDVSVMDS 200
Score = 94.8 bits (236), Expect = 1e-22
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE- 196
+A++ + V D I + NG++L + + +L++ G V L+V + +
Sbjct: 45 IAARSDQ---LDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGS 101
Query: 197 ---PQTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGD 245
+T+ V L K F I G + + V + + GD
Sbjct: 102 SVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRP---GGPADREGTIKPGD 158
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
LL ++ G + EA ++ ++ +L I +V
Sbjct: 159 RLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS 196
Score = 72.1 bits (177), Expect = 1e-14
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 17 VGIRLTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGS-VGIRLTGG------ 69
+ + G +V + V P V +T KEG+ G + GG
Sbjct: 75 ISLLKNVGERVVLEV--EYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRN 132
Query: 70 NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
+ +T V+PG PA +G ++PGD++L V+ + + G T EA+ L + L+++
Sbjct: 133 KSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIE 192
Score = 43.6 bits (103), Expect = 6e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 20/116 (17%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL------GNKIFVKEVTHRLDNNASPG-----THQLA 242
+ V+L K ++ G+ + K V + G + QL
Sbjct: 3 GSFKGSTVVELMK-KEGTTLGLTVSGGIDKDGKPRVSNLR--------QGGIAARSDQLD 53
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 298
GD + +N E L+ + E++ L + E+P + S E
Sbjct: 54 VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVE 109
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 102 bits (257), Expect = 2e-25
Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 61/244 (25%)
Query: 47 VEPDPRFITFQKE--GSVGIRLTGGN------KVGIFVTAVQPGSPASLQG-LQPGDKIL 97
V + + + GI+L G ++ ++ SPA G LQ GD+++
Sbjct: 3 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSA 157
+N + + T EEA L + ++ D E V+ +FH+K+ +
Sbjct: 63 AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI--PSSGTFHVKLPKKHSVE 120
Query: 158 NGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIIL 217
G+++ +
Sbjct: 121 LGITISSPSSRK-----------------------------------------------P 133
Query: 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 277
G+ + + ++ + + T L GD LL I+N D S+++A +++ ++ + L
Sbjct: 134 GDPLVISDIKK---GSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190
Query: 278 IRRE 281
IR++
Sbjct: 191 IRKD 194
Score = 67.5 bits (165), Expect = 4e-13
Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 21 LTGGNKVGIFVTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGG----NKVGIFV 76
L + ++ + + +GI ++ + +
Sbjct: 81 LRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVE-LGITISSPSSRKPGDPLVI 139
Query: 77 TAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
+ ++ GS A G L+ GDK+L ++++ + + E+AV L +D + L + R+DE
Sbjct: 140 SDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI--RKDE 195
Score = 42.8 bits (101), Expect = 9e-05
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIIL----------GNKIFVKEVTHRLDNNASPGTHQLAEG 244
+T V L+ FGI L + + + ++ + L G
Sbjct: 3 VHTETTEVVLTADPVTG-FGIQLQGSVFATETLSSPPLISYIEA---DSPAERCGVLQIG 58
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
D ++ IN PT+ + +EA +L+ S +T+ E
Sbjct: 59 DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 93.1 bits (232), Expect = 4e-23
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 47 VEPDPRFITFQK-EGSVGIRLTGGN-KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
+ +PR I + +G + GG GIF++ + G PA L G L+ GD+IL VN +D
Sbjct: 8 IPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVD 67
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 139
++ + E+A + L + + +I Q + +EY A
Sbjct: 68 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
Score = 51.2 bits (123), Expect = 2e-08
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A G ++ D+I+S NG+ L N + A L+++G TVT+ + +
Sbjct: 47 PADLSG---ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 94
Score = 42.7 bits (101), Expect = 3e-05
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
+ R+ + + F I+ G IF+ + L + + +L +GD +L +
Sbjct: 7 DIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFI---LAGGPADLSGELRKGDQILSV 63
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
N S ++A + ++ + +++ + + P + E+
Sbjct: 64 NGVDLRNASHEQAAIALKNAGQTVTIIAQYK-PEEYSRFEA 103
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 92.1 bits (229), Expect = 2e-22
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
+PR I K +G + GG + GIFV+ + G PA L G L+ GD+IL VN +++
Sbjct: 13 AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 72
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
+ T E+A L + ++ Q R +EY +S
Sbjct: 73 RNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESS 108
Score = 50.8 bits (122), Expect = 4e-08
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A G ++ DRI+S NG++L N + A L+ +G +VT+ + R
Sbjct: 51 PADLSG---ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYR 98
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
P + ++ L K F I+ G IFV + L + + +L GD +L
Sbjct: 9 PGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFI---LAGGPADLSGELRRGDRIL 65
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
+N + ++A + + + +++ + + ++ S G
Sbjct: 66 SVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 87.0 bits (216), Expect = 7e-21
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
+ PR +T +K +G + GG +++GIF++ V P S A GLQ GD++L VND+D
Sbjct: 13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD 72
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+ I +AV L + +I + V+
Sbjct: 73 FQDIEHSKAVEILKT-AREISMRVRFFSG 100
Score = 44.7 bits (106), Expect = 5e-06
Identities = 10/51 (19%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A + G ++ D++++ N + +++E+ AV++L+ + ++++VR
Sbjct: 53 DAHRAG----LQEGDQVLAVNDVDFQDIEHSKAVEILK-TAREISMRVRFF 98
Score = 36.6 bits (85), Expect = 0.003
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
+ V L K G I G K IF+ +V ++ L EGD +L
Sbjct: 12 TQFLPRIVTLKKP-PGAQLGFNIRGGKASQLGIFISKV----IPDSDAHRAGLQEGDQVL 66
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
+N+ + +A +++ +++E +S+ +R P++
Sbjct: 67 AVNDVDFQDIEHSKAVEILKTARE-ISMRVRF-FSGPSS 103
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 86.2 bits (214), Expect = 7e-21
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 200 LRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMS 259
+ V L KSR +++G+ LG++IFVKE+T + L EGD++LKIN T+ MS
Sbjct: 2 IGVLLMKSRANEEYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMS 58
Query: 260 VKEARKLIDSSKEKLSLTIRREVPRPTAYQ 289
+ +ARKLI+ S+ KL L + R++ +
Sbjct: 59 LTDARKLIEKSRGKLQLVVLRDLEHHHHHH 88
Score = 65.0 bits (159), Expect = 2e-13
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 54 ITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+ K + L G+ IFV + A+ G L GD ILK+N + ++ +
Sbjct: 4 VLLMKSRANEEYGLRLGS--QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTD 61
Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEH 136
A + + ++ L+V + + H
Sbjct: 62 ARKLIEKSRGKLQLVVLRDLEHHHH 86
Score = 48.9 bits (117), Expect = 1e-07
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
+A++ G ++ D I+ NG EN+ A +++ S + L V R +
Sbjct: 33 LATKDG---NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDL 81
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 83.2 bits (206), Expect = 9e-20
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDG 257
+ +V L KS K +++G+ L + IFVKE++ ++ + + EGDV+LKIN T+
Sbjct: 2 KPTKVTLVKSAKNEEYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTEN 58
Query: 258 MSVKEARKLIDSSKEKLSLTIRREVPRPT 286
MS+ +A+ LI+ SK KL + ++R+
Sbjct: 59 MSLTDAKTLIERSKGKLKMVVQRDERATL 87
Score = 67.0 bits (164), Expect = 5e-14
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 51 PRFITFQKEG---SVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
P +T K G+RL IFV + S A+ G +Q GD +LK+N +
Sbjct: 3 PTKVTLVKSAKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 58
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDE 133
++ +A + + ++ ++VQ RDE
Sbjct: 59 MSLTDAKTLIERSKGKLKMVVQ--RDE 83
Score = 48.5 bits (116), Expect = 1e-07
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+A++ G +I+ D ++ NG EN+ A ++ S + + V+R P
Sbjct: 35 LAARDG---NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATLLNVP 91
Query: 198 Q 198
Sbjct: 92 D 92
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 86.5 bits (214), Expect = 1e-19
Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 41/184 (22%)
Query: 54 ITFQKEG-SVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM--K 105
I + E +G+ + GG G +T V P + L+ D I +N +
Sbjct: 22 IELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVG 81
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV-------ASQRGDSFHI---------- 148
+T + + ++ + R D E + + +
Sbjct: 82 SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIA 141
Query: 149 --------------KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR--IVLP 192
+ D I NG +LE + + + + + V+++V R +
Sbjct: 142 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTLRT 201
Query: 193 ASPE 196
+P+
Sbjct: 202 EAPK 205
Score = 69.2 bits (169), Expect = 1e-13
Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 52/175 (29%)
Query: 9 ITFQKEG-SVGIRLTGGN----KVGIFVTAVQPGSP------------------------ 39
I + E +G+ + GG G +T V P
Sbjct: 22 IELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVG 81
Query: 40 ---------------------DLFSIFFVEPDPRFITFQKEGSVGIRLT-GGNKVGIFVT 77
+F E + + K+ + L+ N++G +
Sbjct: 82 SMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIA 141
Query: 78 AVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
+ G + LQ GD I K N ++G+ + ++ + V +
Sbjct: 142 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPK 196
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 82.4 bits (204), Expect = 2e-19
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
+ +K G +G + GG + +GIFV+ V+ GS A GL GDKI +VN +
Sbjct: 8 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS 67
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
++ T AV L S ++H++V+
Sbjct: 68 LESTTMGSAVKVLTS-SSRLHMMVRRMG 94
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
+ V D+I NGLSLE+ G+AV+VL S S + + VRR P+S
Sbjct: 54 LCVGDKITEVNGLSLESTTMGSAVKVLT-SSSRLHMMVRRMGSGPSS 99
Score = 41.6 bits (98), Expect = 5e-05
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 21/107 (19%)
Query: 192 PASPEPQTLR-VQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGT----HQ 240
S + V++ KS G + G IFV +V G+
Sbjct: 3 SGSSGSDIIHSVRVEKS-PAGRLGFSVRGGSEHGLGIFVSKVE--------EGSSAERAG 53
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
L GD + ++N + ++ A K++ SS L + +RR P++
Sbjct: 54 LCVGDKITEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSGPSS 99
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 81.6 bits (202), Expect = 3e-19
Identities = 32/81 (39%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 201 RVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSV 260
+V L KSRK +++G+ L + IFVKE++ ++ + + EGDV+LKIN T+ MS+
Sbjct: 3 KVTLVKSRKNEEYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSL 59
Query: 261 KEARKLIDSSKEKLSLTIRRE 281
+A+ LI+ SK KL + ++R+
Sbjct: 60 TDAKTLIERSKGKLKMVVQRD 80
Score = 68.8 bits (169), Expect = 8e-15
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 57 QKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREEAVLF 115
+K G+RL IFV + S A+ G +Q GD +LK+N + ++ +A
Sbjct: 10 RKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTL 65
Query: 116 LLSLQDQIHLIVQNRRDE 133
+ + ++ ++V +RDE
Sbjct: 66 IERSKGKLKMVV--QRDE 81
Score = 47.7 bits (114), Expect = 2e-07
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+A++ G +I+ D ++ NG EN+ A ++ S + + V+R
Sbjct: 33 LAARDG---NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 88.9 bits (219), Expect = 4e-19
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 29/166 (17%)
Query: 49 PDPRFITFQKEGSVGIRLTGGN----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
+ K +G+ + + + + G PA+ G L GD+I+ +N
Sbjct: 205 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS 264
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDE-YEHVVASQRGDSFH--------------- 147
+ G+ + L++Q + + V+ + +
Sbjct: 265 LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMR 324
Query: 148 --------IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
++V RI+ NG S+ + VQ L +S + +K
Sbjct: 325 GGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370
Score = 76.2 bits (186), Expect = 6e-15
Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
+ + D+IMS NG SL + T +++ + +K+ P V + +
Sbjct: 251 LSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV------SCPPVTTVLIKRP 304
Query: 208 RKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 267
K G + N I L + G +++IN + ++ + +
Sbjct: 305 DLKYQLGFSVQNGIICS-----LMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQAL 359
Query: 268 DSSKEKLSLTI-RREVPRPTAYQESTTL 294
+S ++ + + R QE+
Sbjct: 360 SNSVGEIHMKTMPAAMFRLLTGQETPLY 387
Score = 63.5 bits (153), Expect = 6e-11
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 49 PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
P + + + + G + + ++ G A G++ G +I+++N +
Sbjct: 295 PVTTVLIKRPDLKYQL---GFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATA 351
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ 141
E+ V L + +IH+ + + +
Sbjct: 352 HEKIVQALSNSVGEIHMKTM-PAAMFRLLTGQE 383
Score = 40.0 bits (92), Expect = 0.002
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 220 KIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLT 277
+ + + + + + +L+ GD ++ IN G+ + + +I K ++ L
Sbjct: 233 TVILANMMN---GGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289
Query: 278 IRREVPRPT 286
I P T
Sbjct: 290 IVSCPPVTT 298
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 82.1 bits (203), Expect = 4e-19
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 47 VEPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
E + + G +G ++ G K GIF++ V+PGS ++ GL+ GD+I++VN +
Sbjct: 12 RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGV 71
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
D + +EAV L S + IV E
Sbjct: 72 DFSNLDHKEAVNVLKSSRSLTISIVAAAGRELF 104
Score = 44.8 bits (106), Expect = 6e-06
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPASPEPQ 198
+++ D+I+ NG+ N+++ AV VL+ S S T+++ L +
Sbjct: 59 LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSG 110
Score = 36.7 bits (85), Expect = 0.003
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPG----THQL 241
P + E + +V +S G I IF+ V PG L
Sbjct: 9 PGNRENKEKKVFISL-VGSRGLGCSISSGPIQKPGIFISHVK--------PGSLSAEVGL 59
Query: 242 AEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
GD ++++N + KEA ++ SS+ L+++I R + +
Sbjct: 60 EIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGRELFMTDRSG 110
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.2 bits (201), Expect = 5e-19
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 48 EPDPRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
P +T + G RL GG + ++ V GS A+L L PGD I +N +
Sbjct: 6 SGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTE 65
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
+T EA + D + L V
Sbjct: 66 LMTHLEAQNRIKGCHDHLTLSVS 88
Score = 49.6 bits (119), Expect = 6e-08
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASP-GTHQLAEGD 245
+ V L +G ++G + + + V S L GD
Sbjct: 3 SGSSGMPHSVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAG-----SKAALAALCPGD 54
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
++ IN T+ M+ EA+ I + L+L++
Sbjct: 55 LIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
Score = 43.8 bits (104), Expect = 7e-06
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+ D I + NG S E + + A ++ +TL V
Sbjct: 50 LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 80.9 bits (200), Expect = 9e-19
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 48 EPDPRFITFQKE---GSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDM 102
+ R ++ ++ +G + GG + VGI+V+ V+PGS A +GL+ GD+IL+VND
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRR 131
+ +T EAV L + + + R
Sbjct: 66 SLARVTHAEAVKALKGSKKLVLSVYSAGR 94
Score = 47.3 bits (113), Expect = 5e-07
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTV-TLKVRRRIVLPAS 194
++V D+I+ N SL V + AV+ L+ S V ++ RI P+S
Sbjct: 53 LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPSS 100
Score = 41.6 bits (98), Expect = 5e-05
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDV 246
+ + V L +++ + G I G I+V V + + L GD
Sbjct: 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLV----EPGSLAEKEGLRVGDQ 58
Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR--EVPRPT 286
+L++N+ ++ EA K + SK+ L L++ + P+
Sbjct: 59 ILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAGRISGPS 99
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 79.2 bits (196), Expect = 2e-18
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 51 PRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
+T G G RL GG + + ++ + PGS A+ L GD ++ ++ ++ +T
Sbjct: 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
Query: 109 REEAVLFLLSLQDQIHLIVQNRR 131
EA + S + L +Q +
Sbjct: 62 HLEAQNKIKSASYNLSLTLQKSK 84
Score = 49.9 bits (120), Expect = 5e-08
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
QL++GD+++ I+ TD M+ EA+ I S+ LSLT+++
Sbjct: 42 QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82
Score = 44.5 bits (106), Expect = 3e-06
Identities = 4/41 (9%), Positives = 22/41 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ D +++ +G++ + + + A ++ + ++L +++
Sbjct: 43 LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 79.0 bits (195), Expect = 3e-18
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 50 DPRFITFQKEGS---VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
D R Q G G + GIFV +V+ GSPA LQ D+I+ +N+
Sbjct: 4 DMRISINQTPGKSLDFGFTIKWDIP-GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSY 62
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRD 132
+E + Q+ HL++ RR
Sbjct: 63 NDSKEWEEAMAKAQETGHLVMDVRRY 88
Score = 43.6 bits (103), Expect = 8e-06
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 200 LRVQLS-KSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGT----HQLAEGDVLLKIN 251
+R+ ++ K DFG I + IFV V G+ QL D ++ IN
Sbjct: 5 MRISINQTPGKSLDFGFTIKWDIPGIFVASVE--------AGSPAEFSQLQVDDEIIAIN 56
Query: 252 NHPTDGMSVKEARKLIDSSKE--KLSLTIRR 280
N KE + + ++E L + +RR
Sbjct: 57 NTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
Score = 40.9 bits (96), Expect = 7e-05
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTL--KVRR 187
++V+D I++ N + + + + T L VRR
Sbjct: 46 LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 79.7 bits (197), Expect = 3e-18
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 47 VEPDPRFITFQKEGS-VGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
+ +GS +G + GG G+ V + PG A G LQ GD ILK+ ++
Sbjct: 12 CWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
+G+T E+ L + + + ++V V +
Sbjct: 72 QGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 53.5 bits (129), Expect = 5e-09
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
++ D I+ G +++ + QVLR+ G++V + V R S
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 45.8 bits (109), Expect = 2e-06
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
V+L FGI+ G + V+ + + + +L GD +LKI
Sbjct: 12 CWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTI---VPGGLADRDGRLQTGDHILKIGG 68
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
GM+ ++ +++ + + + + R+ + +
Sbjct: 69 TNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPS 109
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 78.9 bits (195), Expect = 5e-18
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 48 EPDPRFITFQKEGSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
EP+ +T +K+ +G+ + +K+GI+V +V G A + G L GD++L V+
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
+ G+++E A + + L V +
Sbjct: 69 RSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102
Score = 52.0 bits (125), Expect = 2e-08
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ D+++S +G SL + A +++ + S VTL+V ++
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
Score = 41.2 bits (97), Expect = 9e-05
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLA 242
EP+ + V L +K++ G+ I+ K I+VK V + A+ +LA
Sbjct: 5 SDHKEPEIITVTL---KKQNGMGLSIVAAKGAGQDKLGIYVKSV---VKGGAADVDGRLA 58
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
GD LL ++ G+S + A +L+ + ++L + ++
Sbjct: 59 AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 99
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 78.1 bits (193), Expect = 6e-18
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
R +T +K G +GI + GG NK+ I ++ + G A L GD IL VN
Sbjct: 2 SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQNRR 131
D+ T +EAV L ++ L V+ +
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEVKYMK 90
Score = 55.4 bits (134), Expect = 7e-10
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
A Q + V D I+S NG L + + AVQ L+ +G V L+V+
Sbjct: 42 AADQTE---ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM 89
Score = 41.9 bits (99), Expect = 3e-05
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
Q RV + K GI I G + I + ++ A+ T L GD +L
Sbjct: 2 SLQRRRVTVRK-ADAGGLGISIKGGRENKMPILISKI---FKGLAADQTEALFVGDAILS 57
Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
+N + EA + + + +++ L ++
Sbjct: 58 VNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 77.8 bits (192), Expect = 7e-18
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 50 DPRFITFQKE---GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+ +T K+ G + G + G++V ++P P L GL+P D++L+VN + +
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTR 65
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
V + +++ L++
Sbjct: 66 DFDCCLVVPLIAESGNKLDLVIS 88
Score = 52.7 bits (127), Expect = 5e-09
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+K DR++ N + + + V ++ +SG+ + L + R
Sbjct: 50 LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90
Score = 51.6 bits (124), Expect = 1e-08
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 194 SPEP-QTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTH-QLAEGDV 246
SP P + +V L K +DFG + ++VK + A PG L D
Sbjct: 1 SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP-----AGPGDLGGLKPYDR 55
Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
LL++N+ T LI S KL L I R
Sbjct: 56 LLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 77.7 bits (192), Expect = 9e-18
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 50 DPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKVN 100
+ +T ++ G +GI + GG + GIF++ V PA+ G++ GDK+L+VN
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+ ++G EAV L + + V R+
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94
Score = 58.8 bits (143), Expect = 5e-11
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++V D+++ NG++L+ E+ AV+ LR +G+ V ++V R
Sbjct: 52 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92
Score = 37.6 bits (88), Expect = 0.001
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTHQLAEGD 245
+ L + + + GI I G K IF+ V + + + GD
Sbjct: 3 EELTLTILRQTGG--LGISIAGGKGSTPYKGDDEGIFISRV---SEEGPAARA-GVRVGD 56
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
LL++N G EA + + + + + + RE
Sbjct: 57 KLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERETS 96
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 78.2 bits (193), Expect = 9e-18
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 47 VEPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKIL 97
+E + +T ++ G +GI + GG + GIF++ V PA+ G++ GDK+L
Sbjct: 12 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 71
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
+VN + ++G EAV L + + V
Sbjct: 72 EVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS 108
Score = 58.9 bits (143), Expect = 5e-11
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++V D+++ NG++L+ E+ AV+ LR +G+ V ++V R
Sbjct: 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104
Score = 45.0 bits (107), Expect = 4e-06
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
PA E + L + + + GI I G K IF+ V + +
Sbjct: 9 PARIEEEELTLTILRQTGG--LGISIAGGKGSTPYKGDDEGIFISRV---SEEGPAARA- 62
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
+ GD LL++N G EA + + + + + + RE +
Sbjct: 63 GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSSG 110
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 78.2 bits (193), Expect = 1e-17
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGD 94
+++F + + QK+ S+G+ + GG + I+V +V+PG S G ++ GD
Sbjct: 17 NLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGD 76
Query: 95 KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+L V+ +++ ++R EAV L I L ++
Sbjct: 77 ILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 51.6 bits (124), Expect = 2e-08
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
IK D +++ +G+ L V AV +L+ + S++ LK
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV 112
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILG--------NKIFVKEVTHRLDNNASPGTHQLAEG 244
V + K + G+ + G I+V V ++ G
Sbjct: 20 FQSMHEKVVNIQKD-PGESLGMTVAGGASHREWDLPIYVISV---EPGGVISRDGRIKTG 75
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
D+LL ++ +S EA L+ + + L
Sbjct: 76 DILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 77.0 bits (190), Expect = 2e-17
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 49 PDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
R + KE +GI +TGG + V I ++ + PG PA G L GD IL VN ++
Sbjct: 8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH 136
++ +EAV L + +I V E+ H
Sbjct: 68 LRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100
Score = 54.7 bits (132), Expect = 1e-09
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ V D I++ NG++L + ++ AV +L + +V
Sbjct: 54 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94
Score = 40.0 bits (94), Expect = 2e-04
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 218 GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 277
G I + E+ + L GD +L +N KEA ++ + ++
Sbjct: 34 GVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90
Query: 278 IRREVPRPTAYQE 290
+ +
Sbjct: 91 VVYVALEHHHHHH 103
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 77.0 bits (190), Expect = 2e-17
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+ G RL+GG + +T + PGS A+ L PGD IL ++ + +T +
Sbjct: 9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 68
Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
A + + Q+ L + R + G S
Sbjct: 69 AQDRIKAASYQLCLKID-RAETRLWSPQVSSGPS 101
Score = 50.4 bits (121), Expect = 4e-08
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
+ V L +G + G + + +T + A+ L GDV+L
Sbjct: 2 SSGSSGNVVLPGPAP---WGFRLSGGIDFNQPLVITRITP--GSKAAAA--NLCPGDVIL 54
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
I+ T+ M+ +A+ I ++ +L L I R R
Sbjct: 55 AIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91
Score = 45.0 bits (107), Expect = 3e-06
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+ D I++ +G E++ + A ++ + + LK+ R SP+
Sbjct: 47 LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQV 96
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 76.2 bits (188), Expect = 2e-17
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
I Q G G RL GG + + ++ V PGS A+L L GD I ++ + +T E
Sbjct: 7 IDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE 66
Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHV 137
A + D + L V R + +
Sbjct: 67 AQNRIKGCTDNLTLTVA-RSEHESDL 91
Score = 50.4 bits (121), Expect = 3e-08
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
L GDV+ I+ T M+ EA+ I + L+LT+ R
Sbjct: 45 LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE 88
Score = 43.1 bits (102), Expect = 1e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ + D I + +G + N+ + A ++ +TL V R
Sbjct: 44 NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 81.7 bits (202), Expect = 3e-17
Identities = 56/281 (19%), Positives = 104/281 (37%), Gaps = 77/281 (27%)
Query: 367 LGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKD 426
+ +++ G IP+K R E + R + S S S+
Sbjct: 47 VHSDSETDDIGFIPSKRRVER--------------------REWSRLKAKDWGSSSGSQG 86
Query: 427 HWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFS------ 480
D V +YE V+ + RP+++ GP D A D LL +FPDKF
Sbjct: 87 REDSV---------LSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHT 137
Query: 481 --APRK-------FNFILWATIKDT--AMYQSSK--EPGMYQGKDSMYQG--KDSMYQGK 525
R+ ++F+ + ++ Q+ K E G Y G S+ +
Sbjct: 138 TRPKREYEIDGRDYHFV---SSREKMEKDIQAHKFIEAGQYNSH---LYGTSVQSV---R 188
Query: 526 ESMYQGKD--------SMYQGKDSMYQG---------KDSMYQG-KDIKKEVKIKLFEQS 567
E QGK ++ + + + +++ + K I +E K F+++
Sbjct: 189 EVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRA 248
Query: 568 QKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
KLE+ ++ F+ + + Y K + +IE +W+
Sbjct: 249 TKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWV 289
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 76.7 bits (189), Expect = 3e-17
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
+++F P +T QK+ +GI + GG +++ V +PA+L G + GD+I
Sbjct: 17 NLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEIT 76
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
VN +KG T+ E + ++ ++ +
Sbjct: 77 GVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107
Score = 49.0 bits (117), Expect = 2e-07
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ D I NG S++ +++++ VT+ +
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL 109
Score = 44.4 bits (105), Expect = 9e-06
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
S P V L K ++ GI I G +++ +V DN + +A GD +
Sbjct: 22 SMVPGK--VTLQK-DAQNLIGISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEI 75
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
+N G + E K+I K ++++ +
Sbjct: 76 TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 76.7 bits (189), Expect = 3e-17
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
PR KE GS G L K G+++T + P A G+ D +++VN +++
Sbjct: 6 SGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEH 136
+ EE V + ++ ++ ++ + H
Sbjct: 66 DASHEEVVEKVKKSGSRVMFLLVDKETDKRH 96
Score = 44.3 bits (105), Expect = 6e-06
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ +D ++ NG ++E+ + V+ ++ SGS V + +
Sbjct: 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK 90
Score = 33.5 bits (77), Expect = 0.034
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
+ D L+++N + S +E + + S ++ + + + E + P
Sbjct: 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK-ETDKRHVEQKSGP 103
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 76.8 bits (189), Expect = 5e-17
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 48 EPDPRFITFQKEGSV--GIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
D + + G+ + GG +GI++T V PGS A GL+ GD+IL+VN
Sbjct: 18 GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRS 77
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR 131
I +EAV L S + L V++
Sbjct: 78 FLNILHDEAVRLLKS-SRHLILTVKDVG 104
Score = 46.7 bits (111), Expect = 2e-06
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+KV D+I+ NG S N+ + AV++L+ S + L V+ LP +
Sbjct: 64 LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPHARTT 112
Score = 42.5 bits (100), Expect = 4e-05
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 23/129 (17%)
Query: 178 GSTVTLKVRRRIV-LPASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRL 230
GS+ + RR + L + + + + L R G+ I G I++ V
Sbjct: 1 GSSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRS---LGLTIRGGAEYGLGIYITGVD--- 54
Query: 231 DNNASPGT----HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
PG+ L GD +L++N + EA +L+ SS+ L LT++ P
Sbjct: 55 -----PGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPH 108
Query: 287 AYQESTTLP 295
A
Sbjct: 109 ARTTVDETK 117
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 75.4 bits (186), Expect = 6e-17
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 51 PRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
+ G R+TGG I VT V A L+PGD I+ +N +G+
Sbjct: 3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGML 62
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
EA + + L + R
Sbjct: 63 HAEAQSKIRQSPSPLRLQL--DRIT 85
Score = 50.0 bits (120), Expect = 5e-08
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
L GD+++ IN +GM EA+ I S L L + R
Sbjct: 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83
Score = 44.6 bits (106), Expect = 4e-06
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
++ D I++ NG S E + + A +R S S + L++ R
Sbjct: 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 75.4 bits (186), Expect = 6e-17
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 51 PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L G K+G ++ V+PGSPA GL GD++++VN +++ T
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET 63
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
++ V + + + + L+V + E +
Sbjct: 64 HQQVVSRIRAALNAVRLLVV-DPETDEQL 91
Score = 45.3 bits (108), Expect = 2e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ DR++ NG ++E + V +R + + V L V
Sbjct: 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85
Score = 35.7 bits (83), Expect = 0.004
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
L GD L+++N + + ++ I ++ + L +
Sbjct: 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 75.4 bits (186), Expect = 6e-17
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 50 DPRFITFQKE---GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
+ + K +GI+L ++ G+F+ + G A+ G L D++L +N D+
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
K T E A + + ++++L + +
Sbjct: 63 KYGTPELAAQIIQASGERVNLTIARPGKPEIEL 95
Score = 52.3 bits (126), Expect = 8e-09
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
+ NDR+++ NG L+ A Q+++ SG V L + R P PE +
Sbjct: 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIAR----PGKPEIE 94
Score = 49.2 bits (118), Expect = 9e-08
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
+ L+V L K + GI L + +F+ ++ L+ + +L+ D +L IN
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDL---LEGGLAAQDGRLSSNDRVLAING 59
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
H + + A ++I +S E+++LTI R
Sbjct: 60 HDLKYGTPELAAQIIQASGERVNLTIARPGK 90
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 76.2 bits (188), Expect = 6e-17
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGD 94
+++F R + +K S+GI + GG V IF+ + P A+ L+ GD
Sbjct: 17 NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGD 76
Query: 95 KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
+I+ + +G+T +AV L + I + V D E V
Sbjct: 77 RIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120
Score = 54.3 bits (131), Expect = 3e-09
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++V DRI++ G S E + + AV +L+++ ++ ++V
Sbjct: 72 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGTHQLAE 243
V++ K D GI I G IF+ + + T +L
Sbjct: 19 YFQSMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMM---HPTGVAAQTQKLRV 74
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
GD ++ I T+GM+ +A L+ ++ + + +
Sbjct: 75 GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSET 118
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 75.9 bits (187), Expect = 6e-17
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 49 PDPRFITFQKE-GSVGIRLTGG----------NKVGIFVTAVQPGSPASLQG-LQPGDKI 96
+ ++ GS+G + GG + GIFV+ + PA+ +G LQ D+I
Sbjct: 7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66
Query: 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
++VN D+ T ++AV + ++ I + V R
Sbjct: 67 IEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
Score = 57.0 bits (138), Expect = 2e-10
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++++DRI+ NG L + AV+ + + + ++V RR P+S
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSS 106
Score = 45.8 bits (109), Expect = 2e-06
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK------------IFVKEVTHRLDNNASPGTHQ 240
+ ++L + L + F II G IFV ++ +D+ +
Sbjct: 3 SGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKI---VDSGPAAKEGG 59
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L D ++++N + +A + ++KE + + + R P
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGP 104
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 75.4 bits (186), Expect = 7e-17
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 50 DPRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
D I QK+ +G+ + G N G+FV+ + G A G L GD+IL VN D++
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDE 133
T+E L + L V
Sbjct: 64 NATQEAVAALLKCSLGTVTLEVGRISTY 91
Score = 51.5 bits (124), Expect = 1e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ D+I+ NG + N +L+ S TVTL+V R
Sbjct: 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI 88
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
TL + L K K G+ I+G + +FV ++ + + +L +GD +L +N
Sbjct: 4 DTLTIGLQKKPGKG-LGLSIVGKRNDTGVFVSDI---VKGGIADADGRLMQGDQILMVNG 59
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
+ + L+ S ++L + R
Sbjct: 60 EDVRNATQEAVAALLKCSLGTVTLEVGRI 88
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 75.0 bits (185), Expect = 7e-17
Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
++ G RL GG + + +++++ G A+ ++ GD +L ++ ++ +G+T E
Sbjct: 7 VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLE 66
Query: 112 AVLFLLSLQDQIHLIVQNRRD 132
A + +++ +Q D
Sbjct: 67 AQNKIKGCTGSLNMTLQRESD 87
Score = 50.7 bits (122), Expect = 3e-08
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
+ GDV+L I+ GM+ EA+ I L++T++RE
Sbjct: 45 VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85
Score = 45.3 bits (108), Expect = 2e-06
Identities = 5/41 (12%), Positives = 23/41 (56%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+++ D ++S +G++ + + + A ++ ++ + ++R
Sbjct: 45 VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 78.1 bits (192), Expect = 9e-17
Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 48 EPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
+ + + +G+ + GG G+F++ + G A GLQ GD+I+++N
Sbjct: 82 SRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYS 141
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRR-----DEYEHVVASQRGDSF 146
+ T EE + L+ + + + V++ + + Q D F
Sbjct: 142 ISSCTHEEVIN-LIRTEKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQF 188
Score = 48.4 bits (115), Expect = 1e-06
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
++V D I+ NG S+ + + + ++R + TV++KVR ++P P
Sbjct: 128 LQVGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKVRHIGLIPVKSSPDE 178
Score = 40.7 bits (95), Expect = 5e-04
Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 50/178 (28%)
Query: 157 ANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ------------------ 198
+ L + E VLR T+ + V + EP
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQV 72
Query: 199 ------------TLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGT-- 238
V+L + + G+ + G +F+ + G
Sbjct: 73 EYDQLTPRRSRKLKEVRLDRL-HPEGLGLSVRGGLEFGCGLFISHLI--------KGGQA 123
Query: 239 --HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTL 294
L GD +++IN + + +E LI + K +S+ +R P L
Sbjct: 124 DSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKVRHIGLIPVKSSPDEPL 180
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 75.0 bits (185), Expect = 9e-17
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 49 PDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
+ K +G + GG I+++ V PG A G L+ GD++L VN + +
Sbjct: 4 GSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 105 KGITREEAVLFLLSLQDQIHLIVQ 128
+G E+AV L + Q + L+V+
Sbjct: 64 EGEQHEKAVELLKAAQGSVKLVVR 87
Score = 51.5 bits (124), Expect = 1e-08
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+K D+++S NG+S+E ++ AV++L+ + +V L VR
Sbjct: 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89
Score = 40.7 bits (96), Expect = 1e-04
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
+S V+L K+ + F I+ G + I++ V + + L GD LL
Sbjct: 2 SSGSSGV--VELPKTDEGLGFNIMGGKEQNSPIYISRV---IPGGVADRHGGLKRGDQLL 56
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
+N +G ++A +L+ +++ + L +R
Sbjct: 57 SVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 74.7 bits (184), Expect = 1e-16
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 50 DPRFITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
D + + G RL GG V + ++ + PG A+ G+ GD +L ++ + +
Sbjct: 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDE 133
T EA + + +++ L + R
Sbjct: 63 THIEAQNKIRACGERLSLGL--SRAI 86
Score = 50.8 bits (122), Expect = 2e-08
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
+A GD +L I+ ++ EA+ I + E+LSL + R +
Sbjct: 45 VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS 88
Score = 45.0 bits (107), Expect = 2e-06
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 139 ASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
A+Q G + V D ++S +G + ++ + A +R G ++L + R I
Sbjct: 40 AAQAG----VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAI 86
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 75.6 bits (186), Expect = 1e-16
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 47 VEPDPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
+ + I +K+ +G+ L G +++ IFV + P PA+ G ++ GD++L++N+
Sbjct: 22 LPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINN 81
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
+ G + + A + + ++ L+ D + +
Sbjct: 82 QILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASG 120
Score = 50.9 bits (122), Expect = 5e-08
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+++ D ++ N L + A +++ + S V L R
Sbjct: 70 MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRN 110
Score = 48.6 bits (116), Expect = 3e-07
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 184 KVRRRIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASP 236
K+R+R A + ++L K + G+ + GNK IFV + +
Sbjct: 14 KIRQR---YADLPGELHIIELEKDKNG--LGLSLAGNKDRSRMSIFVVGI---NPEGPAA 65
Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
++ GD LL+INN G S + A +I ++ K+ L R
Sbjct: 66 ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 75.2 bits (185), Expect = 1e-16
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 46 FVEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
+ + PR I F EG +G L G + V + P AS+ G + GD I+ + +D
Sbjct: 19 YFQSMPRSIRFTAEEGDLGFTLRGNA--PVQVHFLDPYCSASVAGAREGDYIVSIQLVDC 76
Query: 105 KGITREEAVLFLLSL-QDQIHLIVQNRRDE 133
K +T E + L S +D+I + V + DE
Sbjct: 77 KWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106
Score = 37.9 bits (88), Expect = 0.001
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 135 EHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKV 185
+ + D I+S + + + +++L+ G + +KV
Sbjct: 49 HFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
Score = 37.1 bits (86), Expect = 0.002
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 191 LPASPEPQTLRVQLSKSRKKDDFGIIL-GNK-IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
L P+++R ++ D G L GN + V + D S EGD ++
Sbjct: 18 LYFQSMPRSIRFT----AEEGDLGFTLRGNAPVQVHFL----DPYCSASVAGAREGDYIV 69
Query: 249 KINNHPTDGMSVKEARKLI-DSSKEKLSLTIRREVPRPT 286
I +++ E KL+ ++++ + + + T
Sbjct: 70 SIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVT 108
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 74.6 bits (184), Expect = 1e-16
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 54 ITFQKEG-SVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+T KEG + G + GG + +T+V+PG PA +G ++PGD++L V+ + +
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
G T EA+ L + L++ D E V
Sbjct: 67 GTTHAEAMSILKQCGQEAALLI--EYDVSETAV 97
Score = 55.7 bits (135), Expect = 5e-10
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
IK DR++S +G+ L + A+ +L+ G L + +
Sbjct: 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDV 92
Score = 43.0 bits (102), Expect = 1e-05
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+T+ V L K F I G + + V + + GD LL
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSV---RPGGPADREGTIKPGDRLLS 59
Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
++ G + EA ++ ++ +L I +V
Sbjct: 60 VDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSETA 96
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 75.6 bits (186), Expect = 1e-16
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 43 SIFFVEPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG 89
+++F PR + +E S+GI + GG GIF+ V SPA G
Sbjct: 17 NLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNG 76
Query: 90 -LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
L+PGD+I++V+ MD++ + E+AV + + + +VQ
Sbjct: 77 TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
Score = 55.5 bits (134), Expect = 1e-09
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
+K DRI+ +G+ L + + AV+ +R +G+ V V+ I
Sbjct: 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 119
Score = 40.5 bits (95), Expect = 2e-04
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IF+K V L+++ + L GD +++++ S ++A + I + + ++
Sbjct: 61 IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
Query: 281 EVP 283
+
Sbjct: 118 IIS 120
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 74.7 bits (184), Expect = 1e-16
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
++ G RL GG + + +++++ G AS ++ GD +L ++ + +G+T E
Sbjct: 9 VSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE 68
Query: 112 AVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
A + + +++ +Q R G S
Sbjct: 69 AQNKIKACTGSLNMTLQ-RASAAAKSEPVSSGPS 101
Score = 52.0 bits (125), Expect = 1e-08
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
+ GDV+L I+ GM+ EA+ I + L++T++R + S+
Sbjct: 47 VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSG 99
Score = 45.8 bits (109), Expect = 2e-06
Identities = 7/52 (13%), Positives = 25/52 (48%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
+++ D ++S +G+S + + + A ++ ++ + ++R S +
Sbjct: 47 VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 74.3 bits (183), Expect = 1e-16
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREE 111
+ G R++GG I VT V A L+PGD I+ +N + + E
Sbjct: 10 VDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE 69
Query: 112 AVLFLLSLQDQIHLIVQ 128
A + + L +
Sbjct: 70 AQSKIRQSASPLRLQLD 86
Score = 48.8 bits (117), Expect = 1e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
L GD+++ IN + M EA+ I S L L + R
Sbjct: 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS 88
Score = 44.6 bits (106), Expect = 4e-06
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ D I++ NG S EN+ + A +R S S + L++ R
Sbjct: 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRS 88
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 75.2 bits (185), Expect = 1e-16
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 49 PDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPGD 94
PR + +E S+GI + GG GIF+ V SPA L+ GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 95 KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
KIL+V+ +D++ + EAV + + + + IVQ+
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
Score = 55.5 bits (134), Expect = 9e-10
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
+K D+I+ +G+ L+N + AV+ ++++G+ V V+ P
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTP 113
Score = 41.7 bits (98), Expect = 8e-05
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IF+K+V L+++ + T+ L GD +L+++ S EA + I ++ + ++
Sbjct: 52 IFIKQV---LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
Query: 281 EVPRP 285
P
Sbjct: 109 LSSTP 113
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 74.7 bits (184), Expect = 1e-16
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPG 93
PR + +E S+GI + GG GIF+ V SPA G L+PG
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
D+I++V+ MD++ + E+AV + + + +VQ
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
Score = 55.4 bits (134), Expect = 7e-10
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
+K DRI+ +G+ L + + AV+ +R +G+ V V+ I
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR 102
Score = 43.1 bits (102), Expect = 2e-05
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASPGT 238
S +P+ V+L + GI I+G + IF+K V L+++ +
Sbjct: 2 SMQPRR--VELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHV---LEDSPAGKN 55
Query: 239 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L GD +++++ S ++A + I + + ++ +
Sbjct: 56 GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR 102
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 75.1 bits (185), Expect = 2e-16
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 36 PGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-L 90
GS + V I K +G+ + GG I + V A+ G L
Sbjct: 3 SGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRL 62
Query: 91 QPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
GD+IL+VN +D++ + EEA+ L ++ L+V Y
Sbjct: 63 WAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR 107
Score = 52.8 bits (127), Expect = 1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+ D+I+ NG+ L N + A+ LR + V L V R E
Sbjct: 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEES 111
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIILG-----NKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
Q + +++SK R I+ G N I + EV + A+ +L GD +L+
Sbjct: 14 VPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEV---YEEGAAARDGRLWAGDQILE 70
Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
+N S +EA + + +K+ L + R+ + +
Sbjct: 71 VNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPS 114
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 75.2 bits (185), Expect = 2e-16
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 47 VEPDPRFITFQK--EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
+ P +T QK + +GI + GG +++ V +PA+L G + GD+I VN
Sbjct: 16 IPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 75
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
+KG T+ E + ++ ++ + + + +
Sbjct: 76 RSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 109
Score = 50.1 bits (120), Expect = 1e-07
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP-------ASPEPQTL 200
+ D I NG S++ +++++ VT+ + P P +++
Sbjct: 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPGIESV 123
Query: 201 RV 202
++
Sbjct: 124 KI 125
Score = 48.2 bits (115), Expect = 4e-07
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
+V L K ++ GI I G +++ +V DN + +A GD
Sbjct: 13 KLGIPTVPGKVTLQKD-AQNLIGISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGD 68
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
+ +N G + E K+I K ++++ + P + PG
Sbjct: 69 EITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.7 bits (184), Expect = 2e-16
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 32 TAVQPGSPDLFSIFFVEPDPRFITFQKEG-SVGIRLTGG-----NKVGIFVTAVQPGSPA 85
+ V G+ +L+ F P + IT ++ +G + GG + I+V V A
Sbjct: 9 SGVDLGTENLY--FQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAA 66
Query: 86 SLQG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
S G L+ GD+I+ VN ++G+T EEAV L + + L+V + +
Sbjct: 67 SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
Score = 50.4 bits (121), Expect = 5e-08
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+K D+I++ NG SLE V + AV +L+ + TVTL V
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112
Score = 46.2 bits (110), Expect = 2e-06
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 191 LPASPEPQTLRVQLSKSRKKDDFGII------LGNK-IFVKEVTHRLDNNASPGTHQLAE 243
L PQ + L + F I+ G+ I+VK V A+ +L
Sbjct: 18 LYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTV---FAKGAASEDGRLKR 74
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
GD ++ +N +G++ +EA ++ +K ++L +
Sbjct: 75 GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 73.5 bits (181), Expect = 3e-16
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 46 FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
F PR T +K G L +K G F+ +V P SPA GL+ D+I++VN +
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
M+G + V + + D+ L+V +R +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETD 94
Score = 43.5 bits (103), Expect = 1e-05
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
Score = 35.4 bits (82), Expect = 0.006
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
L D ++++N +G + I + ++ L +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 73.4 bits (181), Expect = 3e-16
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
D + K S+GI +TGG GI+V AV P A G + GD++L VN
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+ ++G T ++AV L + +HL+++ +
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
Score = 53.4 bits (129), Expect = 3e-09
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
I DR+++ NG+SLE + AV+ LR++G V L + +
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 46.0 bits (110), Expect = 1e-06
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEGDVL 247
V+L+K+ + G I+VK V + A+ ++ +GD +
Sbjct: 2 KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAV---IPQGAAESDGRIHKGDRV 58
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
L +N +G + K+A + + ++ + + L + + PT
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS-PT 96
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 73.5 bits (181), Expect = 3e-16
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 50 DPRFITFQKE-GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
I K +G+ + GG I + V A G L GD+IL+VN +D+
Sbjct: 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
+ T +EA+ L ++ L + Y+
Sbjct: 64 RKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94
Score = 51.9 bits (125), Expect = 1e-08
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
+ D+I+ NG+ L + A+ VLR + V L + R S
Sbjct: 49 LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97
Score = 45.0 bits (107), Expect = 3e-06
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
+++SK R I+ G+ I + EV + A+ +L GD +L++N
Sbjct: 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEV---YEEGAACKDGRLWAGDQILEVNG 60
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
+ EA ++ + +++ LT+ R+
Sbjct: 61 IDLRKATHDEAINVLRQTPQRVRLTLYRDEA 91
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 73.9 bits (182), Expect = 3e-16
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 43 SIFFVEPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPG 93
+++F I K +G + GG I+VT + G A G LQ G
Sbjct: 17 NLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVG 76
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
D++L VN+ ++ +T EEAV L + + ++L V Y
Sbjct: 77 DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
Score = 55.1 bits (133), Expect = 2e-09
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++V DR++ N SLE V + AV +L+++ V LKV +
Sbjct: 73 LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKP 113
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEG 244
+ ++L K K F I G N I+V ++ +D A+ +L G
Sbjct: 20 FQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IDGGAAQKDGRLQVG 76
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
D LL +NN+ + ++ +EA ++ ++ E + L + +
Sbjct: 77 DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 74.0 bits (182), Expect = 3e-16
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 47 VEPDPRFITFQKEG--SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
KE +G L GG I V V P AS +G +Q G+++L +N
Sbjct: 12 QLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSIN 71
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
+KG T +A+ L ++ ++ R+
Sbjct: 72 GKSLKGTTHHDALAILRQAREPRQAVIVTRK 102
Score = 48.2 bits (115), Expect = 3e-07
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
I+ + ++S NG SL+ + A+ +LR + + R + P +
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPD 110
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEG 244
+ + V + + G + G I V V N + + +G
Sbjct: 8 ATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRV---FPNGLASQEGTIQKG 64
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
+ +L IN G + +A ++ ++E I P A + +
Sbjct: 65 NEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNS 113
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 73.6 bits (181), Expect = 4e-16
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG-----------NKVGIFVTAVQPGSPASLQG-LQPG 93
P R + QK +GI + GG GIF++ V P A G L+ G
Sbjct: 7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVG 66
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
++L+VN + G+T EAV L S+ D + ++V + +
Sbjct: 67 LRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105
Score = 58.2 bits (141), Expect = 1e-10
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
A + G ++V R++ N SL + +G AVQ+LR G T+T+ V + P
Sbjct: 56 AAGRDG---RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF--ESGPS 109
Score = 43.9 bits (104), Expect = 1e-05
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------------IFVKEVTHRLDNNASP 236
S P + + K+ + GI I G IF+ +V A+
Sbjct: 3 SGSSGPGLRELCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKV---SPTGAAG 58
Query: 237 GTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
+L G LL++N G++ EA +L+ S + L++ +
Sbjct: 59 RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 73.6 bits (181), Expect = 5e-16
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 36 PGSPDLFSIFFVEPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASL 87
GS + I + +G + GG N GI+V+ ++ A+L
Sbjct: 3 SGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAAL 62
Query: 88 QG-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
G LQ GDKIL VN D+K + ++AV + + L VQ+R ++
Sbjct: 63 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
Score = 58.2 bits (141), Expect = 1e-10
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
++ D+I+S NG L+N+ + AV + R++G V+L+V+ R+ + P
Sbjct: 66 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGP 113
Score = 44.0 bits (104), Expect = 1e-05
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK---------IFVKEVTHRLDNNASPGTHQLAE 243
+ L++ F I+ G I+V + +N A+ +L E
Sbjct: 12 VDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRI---KENGAAALDGRLQE 68
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
GD +L +N + ++A L ++ +SL ++ +
Sbjct: 69 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG 112
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 73.1 bits (180), Expect = 5e-16
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
I + +G + GG N GI+V+ ++ A+L G LQ GDKIL
Sbjct: 5 LVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILS 64
Query: 99 VNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
VN D+K + ++AV + + L VQ+R +
Sbjct: 65 VNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
Score = 55.0 bits (133), Expect = 1e-09
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ D+I+S NG L+N+ + AV + R++G V+L+V+ R
Sbjct: 56 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 96
Score = 42.3 bits (100), Expect = 3e-05
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
I+V + +N A+ +L EGD +L +N + ++A L ++ +SL ++
Sbjct: 39 IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Query: 281 EVP 283
+
Sbjct: 96 RLE 98
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 73.2 bits (180), Expect = 5e-16
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 49 PDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
I K +G + GG I+VT + G A G LQ GDK+L V
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFH 147
N + ++ +T EEAV L + D ++L V Y S+ H
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY----ISRHHHHHH 105
Score = 57.7 bits (140), Expect = 1e-10
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
+++ D++++ N +SLE V + AV L+++ V LKV + + S
Sbjct: 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRH 100
Score = 46.6 bits (111), Expect = 1e-06
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 197 PQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
+ + ++L K K F I G N I+V ++ ++ A+ +L GD L
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI---IEGGAAHKDGKLQIGDKL 58
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
L +N+ + ++ +EA + ++ + + L + + +
Sbjct: 59 LAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRHHH 102
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 71.9 bits (177), Expect = 8e-16
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 PDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
P R + + G L+G ++ V GSPA GL+ GD+IL VN++++K
Sbjct: 1 PRVRSVEVARGRAGYGFTLSGQA--PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58
Query: 108 TREEAVLFLLSLQDQIHLIVQ 128
+ E+ V + +H+++
Sbjct: 59 SHEDVVKLIGKCSGVLHMVIA 79
Score = 43.8 bits (104), Expect = 6e-06
Identities = 4/40 (10%), Positives = 20/40 (50%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
++ D+I++ N ++++ + V+++ + + +
Sbjct: 41 LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
Score = 38.4 bits (90), Expect = 5e-04
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-IFVKEVTHRLDNNASP----GTHQLAEGDVLL 248
P +++ V R + +G + G + V SP G L GD +L
Sbjct: 1 PRVRSVEVA----RGRAGYGFTLSGQAPCVLSCVMRG-----SPADFVG---LRAGDQIL 48
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 282
+N S ++ KLI L + I V
Sbjct: 49 AVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV 82
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 72.9 bits (179), Expect = 9e-16
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
P + K ++GI LT NK I + ++P S G L PGD IL ++
Sbjct: 13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG 72
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
M+ + EA L S+ +++ L + + S S
Sbjct: 73 TSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSS 116
Score = 51.3 bits (123), Expect = 3e-08
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
+ D I+S +G S+E+ A ++L V L++ P +
Sbjct: 61 LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112
Score = 50.9 bits (122), Expect = 4e-08
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEGD 245
+ L V++ K+ GI + I + + + + L GD
Sbjct: 10 VANASGPLMVEIVKTPG-SALGISLTTTSLRNKSVITIDRIKP---ASVVDRSGALHPGD 65
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
+L I+ + S+ EA KL+ S EK+ L I + S+
Sbjct: 66 HILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPS 115
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 72.4 bits (178), Expect = 1e-15
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
D + ++ G L GG + ++V + PA G ++ GD+IL++N
Sbjct: 22 SMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGET 81
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
K + A+ + + ++ L ++
Sbjct: 82 TKNMKHSRAIELIKNGGRRVRLFLKRGET 110
Score = 55.8 bits (135), Expect = 7e-10
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+++ D I+ NG + +N+++ A++++++ G V L ++R
Sbjct: 68 MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
Score = 45.4 bits (108), Expect = 3e-06
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
V+L + K FG + G + ++V + ++ + + ++ GD +
Sbjct: 20 FQSMDFYTVELERGAKG--FGFSLRGGREYNMDLYVLRLA---EDGPAERSGKMRIGDEI 74
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
L+IN T M A +LI + ++ L ++R
Sbjct: 75 LEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETS 111
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 49 PDPRFITFQK-EGSVGIRLTGG--------------NKVGIFVTAVQPGSPASLQGLQPG 93
PR + K E G + G V+AV PG A G++ G
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKG 64
Query: 94 DKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
D+IL+VN ++++G T ++ V + + + ++ L V + V
Sbjct: 65 DRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL-SVESESKV 107
Score = 48.5 bits (116), Expect = 2e-07
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+++E + V ++R + L V
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
Score = 35.4 bits (82), Expect = 0.008
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
+ +GD +L++N +G + K+ LI + +++L LT+
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESES 105
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 72.4 bits (178), Expect = 1e-15
Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 14/99 (14%)
Query: 42 FSIFFVEPDPRFITFQK-EGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQP 92
FS++ VE + +K S+GI ++G GI+V ++ PGS A+L G ++P
Sbjct: 11 FSLYSVE-----LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
DKIL+V+D++++G+ + + V L + + + L++ R
Sbjct: 66 NDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
Score = 57.0 bits (138), Expect = 2e-10
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
I+ ND+I+ + ++++ + V+VLR++G+ V L + RR+
Sbjct: 63 IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
Score = 44.6 bits (106), Expect = 5e-06
Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK----------IFVKEVTHRLDNNASPGTHQLA 242
+ V+L + + GI I G + I+VK + + +A+ ++
Sbjct: 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSL---IPGSAAALDGRIE 64
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
D +L++++ GM+ + +++ ++ + L + R +P
Sbjct: 65 PNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP 105
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 73.0 bits (179), Expect = 1e-15
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 45 FFVEPDPRFITFQKEGSV--GIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
+EP+ + K G + +K + ++ + G A G +Q GD IL VN
Sbjct: 3 HMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 62
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
D + ++ + A+ L + + H+++ R E
Sbjct: 63 DRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95
Score = 49.9 bits (119), Expect = 1e-07
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
I+ D I++ N L ++ Y +A++VLR S + + R + +T
Sbjct: 52 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLET 103
Score = 42.5 bits (100), Expect = 5e-05
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
EP + V+L K RK G + + + ++ + A+ + + GD++L +
Sbjct: 6 EPNVISVRLFK-RKVGGLGFLVKERVSKPPVIISDL---IRGGAAEQSGLIQAGDIILAV 61
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYS 310
N+ P +S A +++ + + + P TT G ++
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121
Query: 311 SQNLYVQPPTR 321
PPT+
Sbjct: 122 -------PPTK 125
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 73.0 bits (179), Expect = 1e-15
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 46 FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
F PR T +K G L +K G F+ +V P SPA GL+ D+I++VN +
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
M+G + V + + D+ L+V +R +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95
Score = 44.1 bits (104), Expect = 1e-05
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DRI+ NG+ +E ++G V +R G L V R
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91
Score = 35.2 bits (81), Expect = 0.016
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKEN 299
L D ++++N +G + I + ++ L + +++ +P +E+
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR-ETDEFFKKCRVIPSQEH 108
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 72.1 bits (177), Expect = 2e-15
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 48 EPDPRFITFQKEG--SVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
R + KE +GI +TGG + V I ++ + PG PA G L GD IL VN +
Sbjct: 25 FQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV 84
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQ 128
+++ +EAV L + +I V
Sbjct: 85 NLRDTKHKEAVTILSQQRGEIEFEVV 110
Score = 49.8 bits (119), Expect = 1e-07
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
A + G + V D I++ NG++L + ++ AV +L + +V
Sbjct: 65 PADRCG---GLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
Score = 38.6 bits (90), Expect = 8e-04
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
+ Q +R L + GI I G K I + E+ + L GD +
Sbjct: 22 NLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEI---HPGQPADRCGGLHVGDAI 78
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 279
L +N KEA ++ + ++ +
Sbjct: 79 LAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 71.6 bits (176), Expect = 2e-15
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
+ D + +K G + GG K+ ++V + PA G ++ GD+I+++N
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
+ +T A+ + S ++ L+++
Sbjct: 69 TRDMTHARAIELIKSGGRRVRLLLK 93
Score = 52.7 bits (127), Expect = 7e-09
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI-VLPAS 194
++V D+I+ NG S ++ + A+++++ G V L ++R P+S
Sbjct: 55 MRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102
Score = 47.3 bits (113), Expect = 5e-07
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLL 248
+ + V + K K F I G + ++V + ++ + ++ GD ++
Sbjct: 6 SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLA---EDGPAIRNGRMRVGDQII 62
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
+IN T M+ A +LI S ++ L ++R +
Sbjct: 63 EINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 72.2 bits (177), Expect = 2e-15
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 47 VEPDPRFITFQKE--GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
V + + + GI+L G ++ ++ SPA G LQ GD+++
Sbjct: 12 VHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 71
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
+N + + T EEA L + ++ D E V+ S
Sbjct: 72 AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPS 114
Score = 52.9 bits (127), Expect = 1e-08
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+++ DR+M+ NG+ E+ + A Q+LRDS T + + + S P
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIP 113
Score = 39.1 bits (91), Expect = 6e-04
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK---------IFVKEVTHRLDNNASPGTHQLAE 243
+T V L+ FGI + G+ + + ++ + L
Sbjct: 11 VVHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYI---EADSPAERCGVLQI 66
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
GD ++ IN PT+ + +EA +L+ S +T+ E + S+
Sbjct: 67 GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 71.2 bits (175), Expect = 2e-15
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 54 ITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
I ++ +G + GG + GIF+T + PG A++ G L D +L+VN++D+
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
+ AV L + L+V+ R+ E
Sbjct: 68 SEVVHSRAVEALKEAGPVVRLVVRRRQPPPE 98
Score = 58.1 bits (141), Expect = 8e-11
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTL 200
+ VND ++ N + + V + AV+ L+++G V L VRRR PE ++
Sbjct: 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR---QPPPEETSV 102
Score = 45.0 bits (107), Expect = 4e-06
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IF+ ++ + A+ +L D +L++N + A + + + + L +RR
Sbjct: 36 IFITKI---IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRR 92
Query: 281 EVPRPTAYQ 289
P P
Sbjct: 93 RQPPPEETS 101
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 71.2 bits (175), Expect = 2e-15
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 54 ITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+ K+ + L+ N++G + + G + LQ GD I K N ++G+ +
Sbjct: 12 VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71
Query: 112 AVLFLLSLQDQIHLIV 127
+ ++ + V
Sbjct: 72 SYALFKGANGKVSMEV 87
Score = 50.0 bits (120), Expect = 5e-08
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++ D I NG +LE + + + + + + V+++V R AS
Sbjct: 50 LQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96
Score = 46.1 bits (110), Expect = 1e-06
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
+ V L K + + G+ + N+ + ++ +L GD++ K N
Sbjct: 8 EKFNVDLMK-KAGKELGLSLSPNEIGCTIADLIQ---GQYPEIDSKLQRGDIITKFNGDA 63
Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
+G+ + + L + K+S+ + R P+P A
Sbjct: 64 LEGLPFQVSYALFKGANGKVSMEVTR--PKPAAA 95
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 71.2 bits (175), Expect = 3e-15
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVND 101
+ + G+ L GG + V + PA G L+ GD +L +N
Sbjct: 9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQNRR 131
+G+T +AV + + Q+HL+++
Sbjct: 69 ESTQGLTHAQAVERIRAGGPQLHLVIRRPL 98
Score = 60.8 bits (148), Expect = 1e-11
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++V D ++ NG S + + + AV+ +R G + L +RR + P+S
Sbjct: 57 LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
Score = 49.6 bits (119), Expect = 1e-07
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAE 243
+ V+L + FG+ + G + + V+ + L + + +L
Sbjct: 5 SSGQASGHFSVELVRGYAG--FGLTLGGGRDVAGDTPLAVRGL---LKDGPAQRCGRLEV 59
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
GD++L IN T G++ +A + I + +L L IRR + P++
Sbjct: 60 GDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 70.9 bits (174), Expect = 3e-15
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 51 PRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
PR K+ + G L + G + ++ GSPA GL GD++L++N + +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQR 142
+ V + + + L+V D YE V +Q
Sbjct: 62 EHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQV 95
Score = 43.6 bits (103), Expect = 1e-05
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ DR++ NG+ ++ E+ V+++R SG++VTL V
Sbjct: 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
Score = 37.0 bits (86), Expect = 0.003
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 201 RVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVLLKINNHP 254
+LSK ++ ++G L + ++ + SP L +GD +L+IN
Sbjct: 4 ESKLSK-QEGQNYGFFLRIEKDTDGHLIRVIEE-----GSPAEKAGLLDGDRVLRINGVF 57
Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRRE 281
D + +L+ S ++L +
Sbjct: 58 VDKEEHAQVVELVRKSGNSVTLLVLDG 84
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 70.8 bits (174), Expect = 3e-15
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 52 RFITFQKEG--SVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
+T K G S GI + G GIF+ + P SPA L G L+ GD+IL +N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 133
D++ T + + + +I L +Q D+
Sbjct: 67 GKDVRNSTEQAVIDLIKEADFKIELEIQ-TFDK 98
Score = 55.8 bits (135), Expect = 5e-10
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+KV DRI+S NG + N + +++++ + L+++
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTHQLA 242
V L K+ K FGI I+ + IF+K + + ++ + +L
Sbjct: 2 AGELIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGI---VPDSPAHLCGRLK 57
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
GD +L +N + + LI + K+ L I+
Sbjct: 58 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 71.3 bits (175), Expect = 3e-15
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
+PR K+ + G L + G + ++ GSPA GL GD++L++N + +
Sbjct: 11 TFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFV 70
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQR 142
+ V + + + L+V D YE V +Q
Sbjct: 71 DKEEHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQV 107
Score = 44.8 bits (106), Expect = 5e-06
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ DR++ NG+ ++ E+ V+++R SG++VTL V
Sbjct: 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
Score = 38.2 bits (89), Expect = 0.001
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQ-LAEGDVL 247
+ +LSK ++ ++G L + ++ + SP L +GD +
Sbjct: 9 ASTFNPRECKLSK-QEGQNYGFFLRIEKDTDGHLIRVIEE-----GSPAEKAGLLDGDRV 62
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
L+IN D + +L+ S ++L +
Sbjct: 63 LRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 70.4 bits (173), Expect = 3e-15
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 51 PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
P+ K E G L G F+ VQ G PA L GL+ D I++VN +++
Sbjct: 4 PKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP 63
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
E+ V + S + L+V ++ +
Sbjct: 64 YEKVVDRIQSSGKNVTLLVCGKKAQ 88
Score = 43.4 bits (103), Expect = 9e-06
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
++ D I+ NG+++ + Y V ++ SG VTL V
Sbjct: 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
Score = 35.3 bits (82), Expect = 0.007
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASP----GTHQLAEG 244
S +P+ R+ + ++ +G L F+KEV P G L +
Sbjct: 1 SMKPKLCRLA----KGENGYGFHLNAIRGLPGSFIKEVQKG-----GPADLAG---LEDE 48
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
DV++++N ++ I SS + ++L +
Sbjct: 49 DVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 70.9 bits (174), Expect = 3e-15
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 54 ITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+ K+ + L+ N++G + + G + LQ GD I K N ++G+ +
Sbjct: 6 VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65
Query: 112 AVLFLLSLQDQIHLIVQNRR 131
++ + V +
Sbjct: 66 CYALFKGANGKVSMEVTRPK 85
Score = 52.0 bits (125), Expect = 2e-08
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
++ D I NG +LE + + + + + V+++V R P S +L +L +
Sbjct: 44 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP--KPGSGGSGSLVPRLLR 100
Score = 46.2 bits (110), Expect = 1e-06
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
+ V L K K+ G+ + N+ + ++ + +L GD++ K N
Sbjct: 2 EKFNVDLMKKAGKE-LGLSLSPNEIGCTIADL---IQGQYPEIDSKLQRGDIITKFNGDA 57
Query: 255 TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
+G+ + L + K+S+ + R P+P + + +P
Sbjct: 58 LEGLPFQVCYALFKGANGKVSMEVTR--PKPGSGGSGSLVP 96
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 70.9 bits (174), Expect = 3e-15
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 48 EPDPRFITFQKEG-SVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
+ + +K+ +GI + G K+GIFV V G A G +Q D ++
Sbjct: 2 HMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
+V+ + G+T+ A L + + ++ ++ R + VA +
Sbjct: 62 EVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQT 109
Score = 60.1 bits (146), Expect = 3e-11
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSK 206
I+VND ++ +G SL V A VLR++ V + R S Q ++ L +
Sbjct: 54 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQ 112
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTHQLAE 243
+ V+L K + GI I+G IFVK V + A+ ++
Sbjct: 2 HMELFPVELEKDSEG--LGISIIGMGAGADMGLEKLGIFVKTV---TEGGAAHRDGRIQV 56
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
D+L++++ G++ A ++ ++K ++ I RE P +
Sbjct: 57 NDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQL 105
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 71.0 bits (174), Expect = 4e-15
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 57 QKEGSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
+GIR+ GG ++G ++ + PG A G L G ++L+ N + + T
Sbjct: 27 VSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT 86
Query: 109 REEAVLFLLSLQDQIHLIVQNRRD 132
EE + + + V+ +
Sbjct: 87 YEEVQSIISQQSGEAEICVRLDLN 110
Score = 51.7 bits (124), Expect = 2e-08
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPA 193
+ +++ NG+ L + Y ++ + VR + +
Sbjct: 67 KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMSG 113
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 195 PEPQTLRVQLSKSRKKDDFGI-ILGNK----------IFVKEVTHRLDNNASPGTHQLAE 243
+ R + + GI I+G K ++ ++ L ++ T +L E
Sbjct: 14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKI---LPGGSAEQTGKLME 70
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
G +L+ N P + +E + +I + + +R ++
Sbjct: 71 GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMSG 113
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 70.5 bits (173), Expect = 5e-15
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 50 DPRFITFQKE--GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKILKV 99
+ +T + GI ++GG + I ++ V G PA LQ D++ V
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMV 65
Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
N + M + AV L + ++ ++
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKG 98
Score = 59.3 bits (144), Expect = 4e-11
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
++ NDR+ NG+S++NVE+ AVQ LR SG + +RR+
Sbjct: 55 QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTY 106
Score = 42.4 bits (100), Expect = 4e-05
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
I + +V L + G QL E D + +N D + A + + S + +TIRR
Sbjct: 41 IVISDV---LKGGPAEG--QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Query: 281 EVPRP 285
+
Sbjct: 96 KKGGG 100
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 70.4 bits (173), Expect = 5e-15
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 54 ITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+ ++ +G+ L G G+++ + PGSPA+ G L GD+IL+VN + G
Sbjct: 12 VELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
+ AV + ++ +V E + S
Sbjct: 72 LGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHS 105
Score = 54.6 bits (132), Expect = 2e-09
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
+ + DRI+ NG SL + Y AV ++R G + V + V A
Sbjct: 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSG 106
Score = 46.9 bits (112), Expect = 8e-07
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEG 244
+ V+L + G+I G ++++ + L + + +L+ G
Sbjct: 2 SSGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTL---LPGSPAAADGRLSLG 58
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 293
D +L++N G+ A LI +K+ + + S
Sbjct: 59 DRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGP 107
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 69.6 bits (171), Expect = 5e-15
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 49 PDPRFITFQKE-GSVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
+ K +G + GG I++T + G A G LQ GD++L V
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
N+ +++ + EEAV L + D ++L V
Sbjct: 62 NNTNLQDVRHEEAVASLKNTSDMVYLKVA 90
Score = 53.8 bits (130), Expect = 2e-09
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+++ DR+++ N +L++V + AV L+++ V LKV +
Sbjct: 52 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 92
Score = 41.5 bits (98), Expect = 5e-05
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 197 PQTLRVQLSKSRKKDDFGIILG---------NKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
+ V L K K F I G N I++ ++ ++ A+ +L GD L
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKI---IEGGAAQKDGRLQIGDRL 58
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
L +NN + +EA + ++ + + L + +
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 69.7 bits (171), Expect = 5e-15
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 51 PRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
R IT + + G + + + V AV G PA GLQ D +L++N+ ++
Sbjct: 4 YRQITIPRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKC 61
Query: 110 EEAVLFLLSLQDQIHLIVQ 128
E + S +I L+V
Sbjct: 62 VELAHEIRSCPSEIILLVW 80
Score = 44.7 bits (106), Expect = 3e-06
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL--GNKIFVKEVTHRLDNNASP----GTHQLAEGDVL 247
S + + + R KD FG + + + V+ V P G L + D +
Sbjct: 1 SMRYRQITIP----RGKDGFGFTICCDSPVRVQAVDSG-----GPAERAG---LQQLDTV 48
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L++N P + E I S ++ L + R VP+
Sbjct: 49 LQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV 86
Score = 43.1 bits (102), Expect = 1e-05
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
++ D ++ N +E+ + +R S + L V R +P
Sbjct: 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM---VPQVKP 88
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 70.1 bits (172), Expect = 6e-15
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
+ +G + GG GIFV+ + G A G LQ GD++L
Sbjct: 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
+N +D+ + AV L + I L+++
Sbjct: 65 SINGVDVTEARHDHAVSLLTAASPTIALLLE 95
Score = 58.1 bits (141), Expect = 9e-11
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
++V DR++S NG+ + + AV +L + T+ L + R + P
Sbjct: 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA--GSGPS 103
Score = 43.1 bits (102), Expect = 2e-05
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IFV + + A+ L GD +L IN A L+ ++ ++L + R
Sbjct: 40 IFVSRI---AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
Query: 281 EVPRPTAY 288
E +
Sbjct: 97 EAGSGPSS 104
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 74.4 bits (183), Expect = 7e-15
Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 45/236 (19%)
Query: 414 RNSHRRSKSLSKDHWDDVVFGDSISKFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLK 473
S RR + + V +++ +YE V + RPV++ GP+ D D L+
Sbjct: 63 VPSKRRWERKMRARDRSVKSEENV---LSYEAVQRLSINYTRPVIILGPLKDRINDDLIS 119
Query: 474 DFPDKFS--------APRK-------FNFILW-----ATIKDTAMYQSSKEPGMYQG--- 510
++PDKF R+ ++F+ I++ ++ + G
Sbjct: 120 EYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSV 179
Query: 511 ---KDSMYQGK----DSMYQGKESMYQGKDSMYQGK------DSMYQGKDSMYQGKDIKK 557
++ +GK D + + + + S+ + + + +
Sbjct: 180 ASVREVAEKGKHCILDVSGNAIKRL---QVAQLYPVAVFIKPKSVDSVMEMN---RRMTE 233
Query: 558 EVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWISETKS 613
E K +E++ K+E+ + FTG + ++ Y K + +I Q +W+ +S
Sbjct: 234 EQAKKTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKES 289
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 69.7 bits (171), Expect = 8e-15
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 48 EPDPRFITFQKEGS------VGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDK 95
D + K + + GG GI+V AV P A G + GD+
Sbjct: 7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 96 ILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
+L VN + ++G T ++AV L + +HL+++ +
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTS 106
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
I DR+++ NG+SLE + AV+ LR++G V L + + P S E
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG-QSPTSKE 108
Score = 44.6 bits (106), Expect = 5e-06
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 195 PEPQTLRVQLSKSRKKDDFGIILGNK------------IFVKEVTHRLDNNASPGTHQLA 242
V+L+K+ + + I+VK V + A+ ++
Sbjct: 6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAV---IPQGAAESDGRIH 62
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
+GD +L +N +G + K+A + + ++ + + L + +
Sbjct: 63 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPT 105
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 69.4 bits (170), Expect = 8e-15
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 54 ITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
+ +K+ +G ++GG + GIFVT VQP PAS + LQPGDKI++ N
Sbjct: 15 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYS 73
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
I +AV L + Q+ + LI+
Sbjct: 74 FINIEHGQAVSLLKTFQNTVELIIV 98
Score = 59.8 bits (145), Expect = 3e-11
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
++ D+I+ ANG S N+E+G AV +L+ +TV L + R +
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101
Score = 42.4 bits (100), Expect = 3e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IFV V P + L GD +++ N + + +A L+ + + + L I R
Sbjct: 45 IFVTRVQ-----PEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
Query: 281 EVP 283
EV
Sbjct: 100 EVS 102
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 70.8 bits (173), Expect = 8e-15
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 48 EPDPRFITFQKE-----GSVGIRLTGG--------------NKVGIFVTAVQPGSPASLQ 88
+ + + K +G + GG GI+VT V G PA +
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80
Query: 89 GLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
GLQ GDKI++VN DM +T ++A L +++ ++ R+ + V S
Sbjct: 81 GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS 132
Score = 45.0 bits (106), Expect = 7e-06
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVL-RDSGSTVTLKVRRRIVLPASPE 196
+++ D+IM NG + V + A + L + S V L V R+ + A +
Sbjct: 82 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQ 131
Score = 36.6 bits (84), Expect = 0.006
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 25/123 (20%)
Query: 192 PASPEPQTLRVQLSKSRKKDD--FGI-ILGNK-----------------IFVKEVTHRLD 231
+ RV++ K R+ ++ G I G I+V V
Sbjct: 17 NLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV----S 72
Query: 232 NNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLID-SSKEKLSLTIRREVPRPTAYQE 290
L GD ++++N ++ +ARK + S+E + L + R+ + Q
Sbjct: 73 EGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS 132
Query: 291 STT 293
+
Sbjct: 133 MLS 135
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 69.2 bits (170), Expect = 1e-14
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 51 PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR + +K G L G + G + ++PGSPA GL+ D ++ VN ++ +
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDE 133
+ V + DQ L+V ++ E
Sbjct: 66 HDGVVEMIRKGGDQTTLLVLDKELE 90
Score = 45.0 bits (107), Expect = 3e-06
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 149 KVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
K ND +++ NG S+E +++ V+++R G TL V +
Sbjct: 48 KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK 87
Score = 36.5 bits (85), Expect = 0.003
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT-IRREVPRP 285
L D+++ +N + + ++I ++ +L + +E+ RP
Sbjct: 47 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELERP 92
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 68.9 bits (169), Expect = 1e-14
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 51 PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGIT 108
PR +K G L ++ G ++ +V PGSPA+ GL+ D++++VN +++G+
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR 64
Query: 109 REEAVLFLLSLQDQIHLIV 127
E V + + +D+ L+V
Sbjct: 65 HAEVVASIKAREDEARLLV 83
Score = 43.0 bits (102), Expect = 1e-05
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DR++ NG ++E + + V ++ L V
Sbjct: 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
L D L+++N +G+ E I + +++ L + R
Sbjct: 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 68.8 bits (169), Expect = 1e-14
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 54 ITFQKE-GSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+ K +GI + G GIFV ++ S G +Q GD+I+ V+ +++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRD 132
G T ++AV L + L + R +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTLMRRGE 94
Score = 55.7 bits (135), Expect = 5e-10
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
I++ D+I++ +G +L+ AV+VLR +G TV L + RR
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
Score = 41.1 bits (97), Expect = 7e-05
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK--------IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+T V+L+K+ + I IFVK + ++A ++ GD ++
Sbjct: 4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSI---TKSSAVEHDGRIQIGDQIIA 60
Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 283
++ G + ++A +++ + + + LT+ R
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 69.8 bits (171), Expect = 1e-14
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 36 PGSPDLFSIFFVEPDPR---FITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPA 85
G+ D S+ R +I ++ G +G + KV IFV VQPGS A
Sbjct: 8 LGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVA 67
Query: 86 SLQG-LQPGDKILKVNDMDM-KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 140
L+ D+IL +N + + I+ ++A+ L + LIV + +
Sbjct: 68 DRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124
Score = 49.4 bits (118), Expect = 2e-07
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 148 IKVNDRIMSANGLSL-ENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
+K ND+I++ N L +N+ + A+ +L+ + ++ L V R V S
Sbjct: 73 LKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGP 125
Score = 39.7 bits (93), Expect = 4e-04
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGT 238
++ + Q + + + G ++ + IFVK+V + +
Sbjct: 15 SVIQQMAQGRQIEYIDIERP-STGGLGFSVVALRSQNLGKVDIFVKDV---QPGSVADRD 70
Query: 239 HQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
+L E D +L IN+ P +S ++A L+ + L L + RE
Sbjct: 71 QRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTK 119
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 68.6 bits (168), Expect = 2e-14
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 54 ITFQKEGSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
+ +K+ +G ++GG + GIFVT VQP PAS + LQPGDKI++ N
Sbjct: 7 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYS 65
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQ 128
I +AV L + Q+ + LI+
Sbjct: 66 FINIEHGQAVSLLKTFQNTVELIIV 90
Score = 58.6 bits (142), Expect = 5e-11
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
++ D+I+ ANG S N+E+G AV +L+ +TV L + R +
Sbjct: 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 93
Score = 42.4 bits (100), Expect = 2e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 221 IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IFV V P + L GD +++ N + + +A L+ + + + L I R
Sbjct: 37 IFVTRVQ-----PEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
Query: 281 EVP 283
EV
Sbjct: 92 EVS 94
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 68.6 bits (168), Expect = 2e-14
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 47 VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+ IT ++ + G + + + V AV G PA GLQ D +L++N+ ++
Sbjct: 12 ENGEKLQITIRRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 69
Query: 106 GITREEAVLFLLSLQDQIHLIVQ 128
E + S +I L+V
Sbjct: 70 HWKCVELAHEIRSCPSEIILLVW 92
Score = 44.3 bits (105), Expect = 5e-06
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ D ++ N +E+ + +R S + L V R
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV 94
Score = 39.3 bits (92), Expect = 3e-04
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFG-IILGNK-IFVKEVTHRLDNNASPGTHQ-LAEGDVLL 248
PE Q++ R KD FG I + + V+ V P L + D +L
Sbjct: 8 EGDPENGEKL-QITIRRGKDGFGFTICCDSPVRVQAVDSG-----GPAERAGLQQLDTVL 61
Query: 249 KINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
++N P + E I S ++ L + R +
Sbjct: 62 QLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSSG 100
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 68.7 bits (168), Expect = 2e-14
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 50 DPRFITFQKEGSV--GIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMK 105
+ + K G + +K + ++ + G A G +Q GD IL VND +
Sbjct: 1 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDE 133
++ + A+ L + + H+++ R E
Sbjct: 61 DLSYDSALEVLRGIASETHVVLILRGPE 88
Score = 51.7 bits (124), Expect = 2e-08
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
A Q G I+ D I++ N L ++ Y +A++VLR S + + R +
Sbjct: 38 AAEQSG---LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL 94
Query: 198 QT 199
+T
Sbjct: 95 ET 96
Score = 37.1 bits (86), Expect = 0.002
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 199 TLRVQLSKSRKKDDFGI-ILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
+ V+L K RK G + + + ++ + A+ + + GD++L +N+
Sbjct: 2 VISVRLFK-RKVGGLGFLVKERVSKPPVIISDL---IRGGAAEQSGLIQAGDIILAVNDR 57
Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
P +S A +++ + + + P TT G
Sbjct: 58 PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 68.9 bits (169), Expect = 2e-14
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
K G +G + G ++GIFV +Q GS A G L+ D+IL +
Sbjct: 18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
Query: 100 NDMDM-KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
N + + IT ++A+ L +D + L++ + V
Sbjct: 78 NGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117
Score = 47.4 bits (113), Expect = 7e-07
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 148 IKVNDRIMSANGLSL-ENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRV 202
+K D+I++ NG +L + + + A+ +L+ + TV L + R PQ +V
Sbjct: 68 LKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG------SLPQYYKV 117
Score = 41.6 bits (98), Expect = 7e-05
Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPGT 238
+++ + +L K G ++G + IFV+E+ + + +
Sbjct: 10 QLIKNMAQGRHVEVFELLK-PPSGGLGFSVVGLRSENRGELGIFVQEI---QEGSVAHRD 65
Query: 239 HQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQ 289
+L E D +L IN ++ ++A ++ +K+ + L I R P Y+
Sbjct: 66 GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG-SLPQYYK 116
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 71.7 bits (175), Expect = 2e-14
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 2/145 (1%)
Query: 46 FVEPDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMD 103
F PR T +K G L +K G F+ +V P SPA GL+ D+I++VN +
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC 64
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
M+G + V + + D+ L+V +R + H+ + NG +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQK 124
Query: 164 NVEYGTAVQVLRDSGSTVTLKVRRR 188
+ +S ++
Sbjct: 125 ENSREALAEAALESPRPALVRSASS 149
Score = 39.0 bits (90), Expect = 0.002
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 3/145 (2%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENN 300
L D ++++N +G + I + ++ L + + + + + +
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVD--RETDEFFKKCRVIPSQEH 108
Query: 301 YMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKSNLVPRAGRSRNPLLDVSLSQLDRPVSPI 360
PL +++ + + LE + R+ S S + S
Sbjct: 109 LNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTA 168
Query: 361 NNSMDSLGRNNQEVQKGIIPNKARA 385
+S S + + K RA
Sbjct: 169 PSSTSS-SDPILDFNISLAMAKERA 192
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 68.2 bits (167), Expect = 2e-14
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 49 PDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
R + +K G L G + G + ++PGSPA GL+ D ++ VN ++
Sbjct: 5 SSGRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 64
Query: 107 ITREEAVLFLLSLQDQIHLIVQNRRDE 133
+ + V + DQ L+V ++ E
Sbjct: 65 LDHDGVVEMIRKGGDQTTLLVLDKEAE 91
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
+K ND +++ NG S+E +++ V+++R G TL V
Sbjct: 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85
Score = 34.3 bits (79), Expect = 0.023
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
L D+++ +N + + ++I ++ +L +
Sbjct: 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 69.1 bits (169), Expect = 3e-14
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 47 VEPDPRFITFQKEGSV--GIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
+ + + ++ G+++ GG ++ F+T V+ GS A G L+PGD++L+
Sbjct: 33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92
Query: 99 VNDMDMKGITREEAVLFLLSLQD--QIHLIVQNRR 131
N ++G T EE +L + Q+ L+V
Sbjct: 93 WNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127
Score = 43.2 bits (102), Expect = 3e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPA 193
H++ D ++ NG L+ + ++ +S V L V R
Sbjct: 83 HLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 187 RRIVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK--------IFVKEVTHRLDNNASPG 237
RI+L + ++ G+ ++G K F+ +V + +
Sbjct: 29 GRILLNKRLKDGSV-----PRDSGAMLGLKVVGGKMTESGRLCAFITKV---KKGSLADT 80
Query: 238 THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVPRP 285
L GD +L+ N G + +E +I SK ++ L + R P
Sbjct: 81 VGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSS 130
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 69.1 bits (169), Expect = 3e-14
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG-----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
E +T +K +G L GG + + + G+ + +QPGD+IL++
Sbjct: 27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 101 DMDMKGITREEAVLFLLSLQD-QIHLIVQNRRDEYEHVVASQRGDS 145
M+G+TR EA + +L D + +++ RR + + GDS
Sbjct: 87 GTAMQGLTRFEAWNIIKALPDGPVTIVI--RRKSLQSKETTAAGDS 130
Score = 46.3 bits (110), Expect = 2e-06
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPASPEP 197
++ D I+ G +++ + A +++ VT+ +RR+ +
Sbjct: 76 VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126
Score = 44.8 bits (106), Expect = 6e-06
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 172 QVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVK 224
+ + S + + + ++ E V L K F + G + +
Sbjct: 3 DLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTIN 62
Query: 225 EVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRREVP 283
+ AS + + GD +L++ G++ EA +I + + +++ IRR+
Sbjct: 63 RI---FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119
Query: 284 RPTAYQEST 292
+ +
Sbjct: 120 QSKETTAAG 128
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 68.6 bits (168), Expect = 3e-14
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 47 VEPDPRFITFQKEGSV--GIRLTGG--------NKVGIFVTAVQPGSPASLQGLQPGDKI 96
V + +T QK+ GI ++GG + I ++ V PG PA LQ D++
Sbjct: 11 VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRV 69
Query: 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 134
+ VN M+ + AV L ++V+ R
Sbjct: 70 VMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQ 107
Score = 60.9 bits (148), Expect = 1e-11
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASP 195
++ NDR++ NG +E+V + AVQ LR SG + V+R + +P
Sbjct: 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAP 110
Score = 41.7 bits (98), Expect = 8e-05
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
+ V L K K+ FGI + G + I + +V L + G
Sbjct: 8 MEEVIWEQYTVTLQKDSKRG-FGIAVSGGRDNPHFENGETSIVISDV---LPGGPADG-- 61
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
L E D ++ +N P + + A + + S + ++ ++R A
Sbjct: 62 LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVA 109
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 67.7 bits (166), Expect = 3e-14
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 51 PRFITFQK-EGSVGIRLTGG----NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
PR + +K G L + G F+ V PG PA G+Q GD+++ V ++
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVE 63
Query: 106 GITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 138
G+ EE V + + L V + + E V
Sbjct: 64 GLGHEETVSRIQGQGSCVSLTVVDPEADRETSV 96
Score = 44.2 bits (105), Expect = 6e-06
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ DR+++ G S+E + + V ++ GS V+L V
Sbjct: 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88
Score = 35.4 bits (82), Expect = 0.008
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
+ GD L+ + +G+ +E I +SLT+
Sbjct: 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDP 88
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 67.7 bits (166), Expect = 4e-14
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
+ ++ G +GI ++G I ++++ G A G + GD+IL +N
Sbjct: 3 GAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+KG EA+ L + + L ++ + D
Sbjct: 63 LKGKPLSEAIHLLQMAGETVTLKIKKQTD 91
Score = 52.3 bits (126), Expect = 7e-09
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
I + DRI++ N SL+ A+ +L+ +G TVTLK++++ A P
Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT--DAQPA 95
Score = 44.6 bits (106), Expect = 4e-06
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
S V+L + GI I G + I + +T + T + GD +
Sbjct: 1 SSGAIIYTVELKRYGGP--LGITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRI 55
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
L IN+ G + EA L+ + E ++L I+++ A
Sbjct: 56 LAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 67.8 bits (166), Expect = 4e-14
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 54 ITFQKEG--SVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
+T E +GI + G GI++ ++ G + G ++PGD +L+VNDM+ +
Sbjct: 9 VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 107 ITREEAVLFL---LSLQDQIHLIVQNRRDEYEH 136
++ ++AV L + I L V +
Sbjct: 69 MSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGN 101
Score = 46.6 bits (111), Expect = 1e-06
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS---TVTLKVRRR 188
I+ D ++ N ++ EN+ AV+VLRD + L V +
Sbjct: 52 IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
Score = 38.2 bits (89), Expect = 0.001
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 196 EPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAEGDVL 247
+ V L+ K + GI I+G I++ + A ++ GD+L
Sbjct: 3 HMNIITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMK---GGAVAADGRIEPGDML 58
Query: 248 LKINNHPTDGMSVKEAR---KLIDSSKEKLSLTIRREVPRP 285
L++N+ + MS +A + I + LT+ +
Sbjct: 59 LQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGS 99
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 67.0 bits (164), Expect = 6e-14
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 49 PDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
R + QK + G ++G + V +V+PG A G++ GD+I+KVN +
Sbjct: 7 GVQRCVIIQKDQHGFGFTVSGDR--IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNS 64
Query: 108 TREEAVLFLLSLQDQIHLIVQNR 130
+ E V + S + L +
Sbjct: 65 SHLEVVKLIKS-GAYVALTLLGS 86
Score = 41.9 bits (99), Expect = 3e-05
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
+K DRI+ NG + N + V++++ SG+ V L + P+S
Sbjct: 47 VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSSGPSS 92
Score = 36.1 bits (84), Expect = 0.004
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIIL-GNK-IFVKEVTHRLDNNASP----GTHQLAEGD 245
+S + + +Q + + FG + G++ + V+ V G + EGD
Sbjct: 4 GSSGVQRCVIIQ----KDQHGFGFTVSGDRIVLVQSVRP-----GGAAMKAG---VKEGD 51
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
++K+N S E KLI S ++LT+ P++
Sbjct: 52 RIIKVNGTMVTNSSHLEVVKLIKSG-AYVALTLLGSSSGPSS 92
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 66.5 bits (163), Expect = 6e-14
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 52 RFITFQKEGS-VGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
+ I ++ + G R+ GG I++ + P A G L+ GD+++ V+ + G
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 108 TREEAVLFLLSLQDQIHLIVQNRRDE 133
+ + V + Q H+ + R+
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTVRQTR 89
Score = 46.1 bits (110), Expect = 9e-07
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRR 188
++ D ++S +G + + VQ+++ + V L VR+
Sbjct: 46 LRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
Score = 38.4 bits (90), Expect = 5e-04
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
+ L + F I+ GN+ I++ + + A+ +L GD L+ ++
Sbjct: 2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHI---VPLGAADTDGRLRSGDELISVDGT 58
Query: 254 PTDGMSVKEARKLIDSSKEK--LSLTIRRE 281
P G S + +L+ + ++ ++LT+R+
Sbjct: 59 PVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 67.5 bits (165), Expect = 6e-14
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 52 RFITFQKEGSVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
R + +KEGS+ + L GG + V+AV G A G + GD+I+ +N +
Sbjct: 20 RLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79
Query: 108 TREEAVLFLLSLQDQIHLIVQ 128
T EA L +Q +
Sbjct: 80 TLAEAEAALQKAWNQGGDWID 100
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 191 LPASPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAE 243
+ + + V+L + +K+ + + G + V V A+ + +
Sbjct: 8 MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYE---GGAAERHGGVVK 64
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR--PTAYQESTTL 294
GD ++ IN ++ EA + + + I V P Y + T
Sbjct: 65 GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117
Score = 42.4 bits (100), Expect = 4e-05
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS----GSTVTLKVRRRIVLPASPEPQ 198
+ D IM+ NG + + A L+ + G + L V P +
Sbjct: 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC------PPKE 110
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 67.4 bits (165), Expect = 6e-14
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGG--------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
+ + +K+ +GI + G K+GIFV V G A G +Q D+I+
Sbjct: 7 GLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+V+ + + G+T+ A L + + + ++ +
Sbjct: 67 EVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP 101
Score = 57.0 bits (138), Expect = 2e-10
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
I+VND+I+ +G+SL V A VLR++ V + R P+ P
Sbjct: 58 RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK--PSGPS 105
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
S + V+L K GI I+G IFVK V + A+
Sbjct: 3 SGSSGLELFPVELEKDEDG--LGISIIGMGVGADAGLEKLGIFVKTV---TEGGAAQRDG 57
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 288
++ D +++++ G++ A ++ ++K + I RE P +
Sbjct: 58 RIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPSS 106
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 67.3 bits (165), Expect = 7e-14
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 54 ITFQKEG-SVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKG 106
I +K +G +T + I+V + P A G L+ GD++++VN +D+ G
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 107 ITREEAVLFL--LSLQDQIHLIVQNRRDEYE 135
++EE V L ++ + L+V + + +
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH 105
Score = 45.8 bits (109), Expect = 2e-06
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPASP 195
A Q G +K DR++ NG+ L V +LR + TV+L V R+ +
Sbjct: 51 AAIQDG---RLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ---EEAF 104
Query: 196 EPQTL 200
P+ +
Sbjct: 105 HPREM 109
Score = 40.4 bits (95), Expect = 2e-04
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
+ L +QL K + F I + I+VK + L A+ +L GD L+++
Sbjct: 11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI---LPRGAAIQDGRLKAGDRLIEV 67
Query: 251 NNHPTDGMSVKEARKLIDSSKEK--LSLTIRREVPRP 285
N G S +E L+ S+K + +SL + R+
Sbjct: 68 NGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF 104
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 67.4 bits (165), Expect = 8e-14
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 48 EPDPRFITFQKEG-SVGIRLTGGN-----KVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
I +K +G +T + I+V + P A G L+ GD++++VN
Sbjct: 28 IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 87
Query: 101 DMDMKGITREEAVLFL--LSLQDQIHLIVQNRRD 132
+D+ G ++EE V L ++ + L+V + D
Sbjct: 88 GVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
Score = 45.1 bits (107), Expect = 5e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRR 188
+K DR++ NG+ L V +LR + TV+L V R+
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Score = 40.5 bits (95), Expect = 2e-04
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK-------IFVKEVTHRLDNNASPGTHQLAEG 244
+ L +QL K + F I + I+VK + L A+ +L G
Sbjct: 24 NTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI---LPRGAAIQDGRLKAG 80
Query: 245 DVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTIRRE 281
D L+++N G S +E L+ S+K + +SL + R+
Sbjct: 81 DRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 66.2 bits (162), Expect = 1e-13
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 48 EPDPRFITFQKE-GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
+ K+ + + V AV G A L PGD+IL++N+ +
Sbjct: 6 SGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAED 64
Query: 107 ITREEAVLFLLSLQDQIHLIVQ 128
++ E AV L +D + + V
Sbjct: 65 LSWERAVDILREAEDSLSITVV 86
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
+ V++ K D+G + + V VT +L GD +L++
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAG-----GSAHGKLFPGDQILQM 57
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
NN P + +S + A ++ +++ LS+T+ R
Sbjct: 58 NNEPAEDLSWERAVDILREAEDSLSITVVRCTSSG 92
Score = 47.0 bits (112), Expect = 5e-07
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
+ D+I+ N E++ + AV +LR++ ++++ V R S
Sbjct: 48 LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCTSSGPS 94
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 66.7 bits (163), Expect = 1e-13
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 51 PRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
PR I F EG +G L G + V + P ASL G + GD I+ + +D K +T
Sbjct: 16 PRGIHFTVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTV 73
Query: 110 EEAVLFLLSL-QDQIHLIVQNRRDE 133
E + L S +++ + V + D
Sbjct: 74 SEVMKLLKSFGGEEVEMKVVSLLDS 98
Score = 35.5 bits (82), Expect = 0.009
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG-STVTLKVRRRIVLPASPEPQT 199
K D I+S G+ + + +++L+ G V +KV + +S ++
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKS 106
Score = 34.4 bits (79), Expect = 0.024
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREVPR-PTAYQESTTLPG 296
EGD ++ I ++V E KL+ S E++ + + + + + +S G
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSSG 111
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 67.1 bits (164), Expect = 1e-13
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 48 EPDPRFITFQKEG--SVGIRLTGG-------NKVGIFVTAVQPGSPASLQG-LQPGDKIL 97
+ + ++ S+GIR+ G GI+V +V PGS A G +Q DKI+
Sbjct: 13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIV 72
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
V+ ++++G + V L + +HL + R+ D
Sbjct: 73 AVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDR 120
Score = 60.9 bits (148), Expect = 2e-11
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
I+VND+I++ +G++++ V+VLR++G V L + RR ++ +
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEP 116
Score = 38.6 bits (90), Expect = 0.001
Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK----------IFVKEVTHRLDNNASPGTHQLA 242
S +T V+L + + GI I+G I+VK V +A+ +
Sbjct: 11 SSLFETYNVELVR-KDGQSLGIRIVGYVGTSHTGEASGIYVKSVIP---GSAAYHNGHIQ 66
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 295
D ++ ++ G + + +++ ++ + + LT+ R +
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSD 119
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 65.8 bits (161), Expect = 1e-13
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 54 ITFQKEGSVGIRLTGG--NKVGIFVTAVQPGSPASL-QGLQPGDKILKVNDMDMKGITRE 110
+ Q G L GG + + V+ ++ G A+L Q ++ GD+++ +N + G +R+
Sbjct: 15 VQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQ 73
Query: 111 EAVLFLLSLQDQIHLIVQNRRDE 133
EA++ + + LIV+ RR+
Sbjct: 74 EALILIKGSFRILKLIVR-RRNS 95
Score = 45.8 bits (109), Expect = 2e-06
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
Q + VQL +G + G + V ++ D + + ++ GD L
Sbjct: 7 GGSFQYVPVQLQGGAP---WGFTLKGGLEHCEPLTVSKIE---DGGKAALSQKMRTGDEL 60
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
+ IN P G +EA LI S L L +RR P++
Sbjct: 61 VNINGTPLYGSR-QEALILIKGSFRILKLIVRRRNSGPSS 99
Score = 43.9 bits (104), Expect = 8e-06
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
++ D +++ NG L A+ +++ S + L VRRR P+S
Sbjct: 54 MRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSGPSS 99
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 65.9 bits (161), Expect = 2e-13
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 48 EPDPRFITFQK-EGSVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
P+ + + K +G + + I + ++ A G L PGD+++ V
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 100 NDMDMKGITREEAVLFLLSL-QDQIHLIVQ 128
N+ + + EAV L ++ +HL +
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102
Score = 44.3 bits (105), Expect = 7e-06
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-TVTLKVRRRIVLPAS 194
+ DR++S N L+N AV++L+ V L + P+S
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG---PSS 107
Score = 39.3 bits (92), Expect = 3e-04
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILG--------NKIFVKEVTHRLDNNASPGTHQLAE 243
A P+ V+L K K F I+ + I ++ + + + + + L
Sbjct: 9 LALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSL---VADGVAERSGGLLP 65
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRR 280
GD L+ +N + D S+ EA +++ + + L I
Sbjct: 66 GDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 54 ITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
+ ++ G R+ GG I + AV A G L PGD+++ V+ + + G T
Sbjct: 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 110 EEAVLFLLSLQDQIHLIVQNRRD 132
+ + + + RR
Sbjct: 73 RYVIDLMHHAARNGQVNLTVRRK 95
Score = 49.2 bits (118), Expect = 1e-07
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS--TVTLKVRRRIVLPASPE 196
+ D ++ +G+ + + + ++ + V L VRR++ + P
Sbjct: 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV--LSGPS 101
Score = 45.0 bits (107), Expect = 3e-06
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
S + L V L + F I+ G++ I + V + ++ +L GD L
Sbjct: 3 SGSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDEL 59
Query: 248 LKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVPRP 285
+ ++ P G + + L+ + +++LT+RR+V
Sbjct: 60 VYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSG 99
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 65.1 bits (159), Expect = 3e-13
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 49 PDPRFITFQKEGS-------VGIRLTGGN----KVGIFVTAVQPGSPASLQGLQPGDKIL 97
+ +T +K + L ++ FV V SPA L GL PGD I
Sbjct: 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIA 62
Query: 98 KVNDMDMKGITREEAVLFLLSLQDQIHLIVQN 129
VN ++++GI E V + + + + L
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 45.5 bits (108), Expect = 2e-06
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+ D I S NGL++E + + V +++ SG+ + L+
Sbjct: 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
Score = 35.8 bits (83), Expect = 0.004
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
L GD + +N +G+ +E +I +S L L
Sbjct: 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 65.2 bits (159), Expect = 3e-13
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 47 VEPDPRFITFQKE--GSVGIRLTGG---------NKVGIFVTAVQPGSPASLQG-LQPGD 94
+ ++ G + V + + GSPA L+ GD
Sbjct: 7 GSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGD 66
Query: 95 KILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
+IL VN + + + V + + L + + +
Sbjct: 67 RILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
Score = 56.7 bits (137), Expect = 3e-10
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
+KV DRI++ NG S+ N+ + V++++D+G +VTL++ + L + P +
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113
Score = 41.7 bits (98), Expect = 7e-05
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK------------IFVKEVTHRLDNNASPGT 238
+S QT V + + ++ + FG I+ + + + +D + +
Sbjct: 4 GSSGSLQTSDVVIHR-KENEGFGFVIISSLNRPESGSTITVPHKIGRI---IDGSPADRC 59
Query: 239 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQEST 292
+L GD +L +N M + KLI + ++L I + + S+
Sbjct: 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 65.2 bits (159), Expect = 3e-13
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 46 FVEPDPRFITFQKEGS-------VGIRLTGGNK----VGIFVTAVQPGSPASLQGLQPGD 94
F + +T +K+ + R N + + +Q SPA GLQ GD
Sbjct: 11 FSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGD 70
Query: 95 KILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
+ +N + +G T ++ V + S + + +
Sbjct: 71 VLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 44.4 bits (105), Expect = 5e-06
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
++ D + + NG+S E Y V ++R SG+ +T++
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 34.4 bits (79), Expect = 0.017
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
L GDVL IN T+G + K+ LI SS L++
Sbjct: 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 65.3 bits (159), Expect = 5e-13
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASL--QGLQPGDKILKVND 101
+ I + + G G + GG K+ + V+ V PG+PA L L GD+++ +N
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
D+ T ++ VLF+ + ++ +
Sbjct: 73 RDIAEHTHDQVVLFIKASCERHSGELM 99
Score = 45.3 bits (107), Expect = 4e-06
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
P + +++ + FG + G + V V A +L EGD
Sbjct: 9 GGIPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGD 65
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
++ IN + + I +S E+ S + V RP A + G
Sbjct: 66 QVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV-RPNAVYDVVEESG 115
Score = 42.9 bits (101), Expect = 2e-05
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS----TVTLKVRRRIVLPASPEPQT 199
+ D+++ NG + + V ++ S + L VR V E
Sbjct: 61 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGP 116
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 68.6 bits (167), Expect = 6e-13
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 33 AVQPGSPDLFSIFFVEPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPASLQ 88
A +PG+ + R +T +K G +GI + GG NK+ I ++ + G A
Sbjct: 60 AAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQT 119
Query: 89 G-LQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 137
L GD IL VN D+ T +EAV L ++ L V+ ++ +
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYF 169
Score = 45.1 bits (106), Expect = 3e-05
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+ V D I+S NG L + + AVQ L+ +G V L+V+ + +
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKN 171
Score = 39.0 bits (90), Expect = 0.003
Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 18/166 (10%)
Query: 175 RDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGI---ILGNK-----IFVKEV 226
+ + P PE L+ + RK D G+ I G + I + ++
Sbjct: 51 EPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKI 110
Query: 227 THRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
A+ T L GD +L +N + EA + + + +++ L ++
Sbjct: 111 ---FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSP 167
Query: 287 AYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPNNLLEDKS 332
++ S + + L QP + G L +
Sbjct: 168 YFKNSAGGT-------SVGWDSPPASPLQRQPSSPGPQPRNLSEAK 206
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 65.2 bits (159), Expect = 6e-13
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 48 EPDPRFITFQKEG--SVGIRLTGG------NKVGIFVTAVQPGSPASLQG-LQPGDKILK 98
E I G +G+ L G +GIF+ ++ G A G L+ D+++
Sbjct: 23 EQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIA 82
Query: 99 VNDMDMKGITREEAVLFL-------LSLQDQIHLIVQNRRD 132
VN + G + EA+ L +++ I L++ R
Sbjct: 83 VNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123
Score = 46.3 bits (110), Expect = 2e-06
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGS-------TVTLKVRRR 188
+++ND++++ NG +L A++ LR S S + L + RR
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 38.2 bits (89), Expect = 0.001
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 178 GSTVTLKVRRR----IVLPASPEPQTLRVQLSKSRKKDDFGI-ILGNK---------IFV 223
GS+ + ++ + S E TL + L+ G+ + GNK IF+
Sbjct: 1 GSSGSSGLKGEPDCYALSLESSEQLTLEIPLND-SGSAGLGVSLKGNKSRETGTDLGIFI 59
Query: 224 KEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMS-------VKEARKLIDSSKEKLSL 276
K + H A+ +L D L+ +N G S ++ + + + + + L
Sbjct: 60 KSIIH---GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116
Query: 277 TIRRE 281
I R
Sbjct: 117 VILRR 121
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 64.4 bits (157), Expect = 7e-13
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG--NKVGIFVTAVQPGSPA--SLQGLQPGDKILKVND 101
+ I + + G G + GG K+ + V+ V PG+PA + L GD+++ +N
Sbjct: 15 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Query: 102 MDMKGITREEAVLFLLSLQDQIHLIVQ 128
D+ T ++ VLF+ + ++ +
Sbjct: 75 RDIAEHTHDQVVLFIKASCERHSGELM 101
Score = 42.5 bits (100), Expect = 3e-05
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----IFVKEVTHRLDNNASPGTHQLAEGD 245
P + +++ + FG + G + V V A +L EGD
Sbjct: 11 GGIPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGD 67
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
++ IN + + I +S E+ S + V RP
Sbjct: 68 QVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV-RP 106
Score = 40.6 bits (95), Expect = 2e-04
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRI 189
+ D+++ NG + + V ++ S + ++ +
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 104
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 63.1 bits (154), Expect = 1e-12
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 54 ITFQK-EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
+K G + GG + + ++ PA+L G ++ GD I+ VND + G T
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 110 EEAVLFL--LSLQDQIHLIV 127
+ V + + + L +
Sbjct: 64 AQVVKIFQSIPIGASVDLEL 83
Score = 44.9 bits (107), Expect = 2e-06
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRR 187
++ D I+S N + + V++ + G++V L++ R
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
Score = 42.6 bits (101), Expect = 1e-05
Identities = 15/88 (17%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 199 TLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHP 254
++ +L KS + F ++ G++ + +K + + + + ++ GDV++ +N+
Sbjct: 1 SIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVIVSVNDTC 57
Query: 255 TDGMSVKEARKLIDSSK--EKLSLTIRR 280
G + + K+ S + L + R
Sbjct: 58 VLGHTHAQVVKIFQSIPIGASVDLELCR 85
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 62.3 bits (152), Expect = 2e-12
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 49 PDPRFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
DPR IT K+ G VG G +T++ S A+ GL I ++N ++ G
Sbjct: 3 MDPRTITMHKDSTGHVGFIFKNGK-----ITSIVKDSSAARNGLLTEHNICEINGQNVIG 57
Query: 107 ITREEAVLFLLSLQDQIHLIV 127
+ + L + + + +
Sbjct: 58 LKDSQIADILSTSGTVVTITI 78
Score = 42.7 bits (101), Expect = 1e-05
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
A++ G + I NG ++ ++ +L SG+ VT+ +
Sbjct: 35 SAARNG----LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
Score = 32.7 bits (75), Expect = 0.048
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
L + +IN G+ + ++ +S +++TI
Sbjct: 41 LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 63.2 bits (154), Expect = 2e-12
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 48 EPDPRF--ITFQKEGSVGIRLTGGNKV----GIFVTAVQPGSPASLQG-LQPGDKILKVN 100
+ DP F IT KE +G+++ GG +++ V PG G L+PGD+++ +N
Sbjct: 11 DRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIVQ 128
M G++ EEA + + + +
Sbjct: 71 KESMIGVSFEEAKSIITRAKLRSESPWE 98
Score = 41.6 bits (98), Expect = 6e-05
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSG----STVTLKVRRR 188
+K D+++S N S+ V + A ++ + S + R
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104
Score = 38.6 bits (90), Expect = 7e-04
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAE 243
SP + ++ K+ G+ ILG +++ EV + +L
Sbjct: 6 SGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEV---IPGGDCYKDGRLKP 62
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
GD L+ IN G+S +EA+ +I +K + R
Sbjct: 63 GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 63.3 bits (154), Expect = 2e-12
Identities = 15/96 (15%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 48 EPDPRFITFQK---EGSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKV 99
E + + + + +G+ + + +GI+++ + P S A+ G ++ GD+I+++
Sbjct: 17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
Query: 100 NDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
N ++++ A+L L++ + +
Sbjct: 77 NGIEVQNREEAVALLTSEE-NKNFSLLIARPELQLD 111
Score = 40.6 bits (95), Expect = 2e-04
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPE 196
I+ DRI+ NG+ ++N E A+ ++ + L R + L
Sbjct: 67 IREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWM 115
Score = 37.5 bits (87), Expect = 0.002
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK-------IFVKEVTHRLDNNASPGTHQLAEGD 245
E + V L + +D G+ + I++ E+ N+ + ++ EGD
Sbjct: 15 REELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEI---DPNSIAAKDGRIREGD 71
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
+++IN A + +K L R E+ + + + P
Sbjct: 72 RIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSGPS 122
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 64.6 bits (157), Expect = 2e-12
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 36 PGSPDLFSIFFVE--PDPRFITFQKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQP 92
+ +F VE D + G G K+GIFV V G A G +Q
Sbjct: 73 EKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
D +++V+ + G+T+ A L + + ++ ++
Sbjct: 133 NDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
Score = 52.6 bits (126), Expect = 3e-08
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
A + G I+VND ++ +G SL V A VLR++ V + R
Sbjct: 123 AAHRDG---RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 38.4 bits (89), Expect = 0.002
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGI-ILGNK-----------IFVKEVTHRLDNNASPGTH 239
+ V+L K + GI I+G IFVK VT + A+
Sbjct: 74 KRVERLELFPVELEKDSEG--LGISIIGMGAGADMGLEKLGIFVKTVT---EGGAAHRDG 128
Query: 240 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
++ D+L++++ G++ A ++ ++K ++ I RE
Sbjct: 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 63.0 bits (153), Expect = 3e-12
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
IFV V+ G PA GL GD+I+KVN + G T + + + + + L V +
Sbjct: 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121
Score = 47.2 bits (112), Expect = 1e-06
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPAS 194
+ DRI+ NG S+ Y + ++++S +T+ L V + P+S
Sbjct: 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGPSS 125
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQ-LAEGDV 246
P ++ + G + IFVK+V P L GD
Sbjct: 30 VYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG-----GPAFEAGLCTGDR 84
Query: 247 LLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
++K+N G + + LI +S L L++ + P++
Sbjct: 85 IIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGPSS 125
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 62.9 bits (153), Expect = 3e-12
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 47 VEPDPRFITFQKEGS---VGIRLTGGNKV-----------GIFVTAVQPGSPASLQG-LQ 91
+ R + K G+ +G + G+ V GIF++ + PG A G L
Sbjct: 26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLA 85
Query: 92 PGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
D++L+VN +++ G + ++ +++ + + V+
Sbjct: 86 VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122
Score = 46.4 bits (110), Expect = 2e-06
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+ VND ++ NG+ + ++ + + + VR
Sbjct: 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 188 RIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVL 247
R+ + +P ++ S + G+ IF+ + + T LA D +
Sbjct: 34 RLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVP---GGLAQSTGLLAVNDEV 90
Query: 248 LKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
L++N G S+ + ++ ++ L +T+R R
Sbjct: 91 LEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR 127
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 62.5 bits (152), Expect = 4e-12
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 47 VEPDPRFITFQK-EGSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
++ +K G + GG + + ++ PA+L G ++ GD I+ VND
Sbjct: 15 LKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 74
Query: 103 DMKGITREEAVLFL 116
+ G T + V
Sbjct: 75 CVLGHTHAQVVKIF 88
Score = 50.6 bits (121), Expect = 7e-08
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
P+ + + + +L KS + F ++ G++ + +K + + + + ++ GDV+
Sbjct: 12 PSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVI 68
Query: 248 LKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 293
+ +N+ G + + K+ S + L + R P P + T
Sbjct: 69 VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNT 116
Score = 49.8 bits (119), Expect = 1e-07
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEP 197
++ D I+S N + + V++ + G++V L++ R LP P+
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDD 113
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 61.7 bits (150), Expect = 5e-12
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 48 EPDPRFITFQKE--GSVGIRLTGG----NKVGIFVTAVQPGSPASLQG-LQPGDKILKVN 100
+ R + +K +G+ L + + G PA G L GD++ +N
Sbjct: 7 GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN 66
Query: 101 DMDMKGITREEAVLFLLSLQDQIHLIV 127
+ G+ + + Q + +
Sbjct: 67 GTSLVGLPLAACQAAVRETKSQTSVTL 93
Score = 46.3 bits (110), Expect = 1e-06
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ + DR+ + NG SL + +R++ S ++ +
Sbjct: 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIV 96
Score = 44.7 bits (106), Expect = 4e-06
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL--------GNKIFVKEVTHRLDNNASPGTHQLAEGD 245
S V L K R+ + G+ L + + H + + L+ GD
Sbjct: 5 SSGDNCREVHLEK-RRGEGLGVALVESGWGSLLPTAVIANLLH---GGPAERSGALSIGD 60
Query: 246 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L IN G+ + + + +K + S+T+ P
Sbjct: 61 RLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP 100
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 62.1 bits (151), Expect = 6e-12
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 47 VEPDPRFITFQKE-GSVGIRLTGG--NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDM 102
++ T +K G + GG + V +V P PA+ G ++ GD I+ +N++
Sbjct: 16 LKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75
Query: 103 DMKGITREEAVLFL 116
+ G T + V
Sbjct: 76 CVLGHTHADVVKLF 89
Score = 51.3 bits (123), Expect = 4e-08
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEPQT 199
++ D I+ N + + + V++ + G +V L + R LP PE
Sbjct: 63 METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPA 116
Score = 47.8 bits (114), Expect = 6e-07
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 192 PASPEPQTLRVQLSKSRKKDDFGIILGNK----IFVKEVTHRLDNNASPGTHQLAEGDVL 247
+ + L L KS F II G++ + VK V + + + ++ GDV+
Sbjct: 13 ASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSV---IPDGPAAQDGKMETGDVI 69
Query: 248 LKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 293
+ IN G + + KL S + ++L + R P P ++
Sbjct: 70 VYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 60.9 bits (148), Expect = 9e-12
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 63 GIRLTGGN----KVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
IR+ G+ V V +V+ GSPA GL+ GD I +N + G+ + V LL
Sbjct: 21 AIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK 80
Query: 119 LQDQIHLIVQNRRDEYEHVV 138
++I L + E V
Sbjct: 81 SGNKISLRTT-ALENTETSV 99
Score = 43.2 bits (102), Expect = 1e-05
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
++ D I NG S+ + + V++L SG+ ++L+
Sbjct: 52 LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 281
L GD++ IN G+ + +L+ S K+SL
Sbjct: 52 LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 60.6 bits (147), Expect = 1e-11
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 49 PDPRFITFQKEGS-------VGIRLTGGNK---------VGIFVTAVQPGSPASLQGLQP 92
+ + QK+ S G + + ++ +V G A GL+
Sbjct: 6 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
GD +++VN ++ + + V + + + + V
Sbjct: 66 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
Score = 47.1 bits (112), Expect = 8e-07
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
+++ D ++ NG ++ V + V ++R G+T+ +KV P
Sbjct: 63 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107
Score = 41.4 bits (97), Expect = 9e-05
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 16/108 (14%)
Query: 193 ASPE-PQTLRVQLSKSRKKDDFGIIL-GNKIFVKEVTHRLDNNASPGTH----------- 239
S + V L K + + FG +L G K +
Sbjct: 1 GSDYIIKEKTVLLQK-KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 59
Query: 240 --QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L GD L+++N + ++ +I L + + P
Sbjct: 60 RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 59.7 bits (145), Expect = 2e-11
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 47 VEPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDM 104
++ + + K E S+G+ +T F+ ++ G + GD I +N ++
Sbjct: 2 MKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 105 KGITREEAVLFLLSL 119
G + L L
Sbjct: 62 VGWRHYDVAKKLKEL 76
Score = 40.5 bits (95), Expect = 1e-04
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 198 QTLRVQLSKSRKKDDFGI-ILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNH 253
V + KS +D G+ I N F+K + + GD + IN
Sbjct: 5 IEKEVNVYKS--EDSLGLTITDNGVGYAFIKRIKD---GGVIDSVKTICVGDHIESINGE 59
Query: 254 PTDGMSVKEARKLIDSSKEKLSLTIRREVPR 284
G + K + K++ T++ P+
Sbjct: 60 NIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90
Score = 35.9 bits (83), Expect = 0.005
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKV 185
I V D I S NG ++ + + L++ T+K+
Sbjct: 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 59.3 bits (144), Expect = 2e-11
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 52 RFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
R I F+K +GI L K V + G QG L GD+IL++N ++ +
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73
Query: 109 REEAVLFLLSLQDQIHLIV 127
++ + + I L V
Sbjct: 74 VDQLQKAMKETKGMISLKV 92
Score = 45.8 bits (109), Expect = 2e-06
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR 187
+ V D I+ NG ++ N + ++++ ++LKV
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIP 94
Score = 42.0 bits (99), Expect = 4e-05
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 195 PEPQTLR-VQLSKSRKKDDFGIIL----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+R +Q K ++ GI L V + H L GD +L+
Sbjct: 8 HSGHMVRLIQFEKVTEEP-MGICLKLNEKQSCTVARILH---GGMIHRQGSLHVGDEILE 63
Query: 250 INNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
IN SV + +K + +K +SL +
Sbjct: 64 INGTNVTNHSVDQLQKAMKETKGMISLKVIP 94
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.1 bits (143), Expect = 8e-11
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 54 ITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITREE 111
+G+ + + ++ + A+ G LQPGD ++ V ++ G T E
Sbjct: 31 TKLTVGNLGLGLVVIQNGP-YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE 89
Query: 112 AVLFL--LSLQDQIHLIVQ 128
+ L +++ + +
Sbjct: 90 FLKLLQNITIGTVLQIKAY 108
Score = 46.0 bits (109), Expect = 2e-06
Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIV-LPAS 194
A+ G ++ D ++S ++ +++L++ G+ + +K R + +P
Sbjct: 61 AAASDG---ILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQE 117
Query: 195 PEP 197
+
Sbjct: 118 WQD 120
Score = 43.3 bits (102), Expect = 2e-05
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 177 SGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNK-IFVKEVTHRLDNNAS 235
SGS + + S + ++ +L+ +I + + + ++ A+
Sbjct: 6 SGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHL---INKGAA 62
Query: 236 PGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRR-EVPRPTAYQEST 292
L GDVL+ + + G +++E KL+ + L + R + P +Q+S
Sbjct: 63 ASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSG 122
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.2 bits (141), Expect = 8e-11
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 50 DPRFITFQKEG--SVGIRLTGG---NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMD 103
+ K+ ++GI + GG + + +Q G A G L+ G IL+VN +
Sbjct: 5 SSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 104 MKGITREEAV 113
++G EA
Sbjct: 65 LRGKEHREAA 74
Score = 48.6 bits (116), Expect = 2e-07
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+KV I+ NGL+L E+ A +++ ++ T +V + P
Sbjct: 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGP 100
Score = 35.5 bits (82), Expect = 0.007
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGI-ILGNK------IFVKEVTHRLDNNASPGTHQLAEGDV 246
S V++ KS GI I G + + ++ QL G V
Sbjct: 2 SSGSSGTLVRVKKSAAT--LGIAIEGGANTRQPLPRIVTI---QRGGSAHNCGQLKVGHV 56
Query: 247 LLKINNHPTDGMSVKEARKLIDSS-----KEKLSLTIRREVPRPTA 287
+L++N G +EA ++I + ++ + + P++
Sbjct: 57 ILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSS 102
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 58.4 bits (141), Expect = 2e-10
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 49 PDPRFITFQKEGSVG----IR------------LTGGNKVGIFVTAVQPGSPASLQGLQP 92
+ + QK+ S G +R T ++ +V G A GL+
Sbjct: 26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 85
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQ 128
GD +++VN ++ + + V + + + + V
Sbjct: 86 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
Score = 46.1 bits (109), Expect = 3e-06
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQ 198
+++ D ++ NG ++ V + V ++R G+T+ +KV + P+
Sbjct: 83 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM---VTRHPDMD 130
Score = 39.6 bits (92), Expect = 6e-04
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 285
L GD L+++N + ++ +I L + + P
Sbjct: 83 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 127
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 56.2 bits (136), Expect = 3e-10
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 51 PRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGI 107
+ I K +G + I V + G A G + GD++ +VN + ++
Sbjct: 5 VKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK 64
Query: 108 TREEAVLFLLSLQDQIHLIV 127
EE + L Q I +
Sbjct: 65 RPEEIIQILAQSQGAITFKI 84
Score = 46.6 bits (111), Expect = 7e-07
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKV 185
I V D + NG+ +E+ +Q+L S +T K+
Sbjct: 47 IHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
Score = 41.2 bits (97), Expect = 7e-05
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 201 RVQLSKSRKKDDFGIILGNK---IFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDG 257
++L K+R+ I + I V + A+ + + GD L ++N P +
Sbjct: 7 IIRLVKNREPLGATIKKDEQTGAIIVARIMR---GGAADRSGLIHVGDELREVNGIPVED 63
Query: 258 MSVKEARKLIDSSKEKLSLTI 278
+E +++ S+ ++ I
Sbjct: 64 KRPEEIIQILAQSQGAITFKI 84
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 56.7 bits (137), Expect = 4e-10
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 36 PGSPDLFSIFFVEPDPRFITFQK--EGSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQP 92
+ + + +K + +G + + ++ + G A G L
Sbjct: 11 DERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD-SVIISRIVKGGAAEKSGLLHE 69
Query: 93 GDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
GD++L++N ++++G E L + + ++
Sbjct: 70 GDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 104
Score = 47.8 bits (114), Expect = 5e-07
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ D ++ NG+ + + +L D T+T +
Sbjct: 67 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Score = 45.5 bits (108), Expect = 3e-06
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 177 SGSTVTLKVRRRIVLPASPEPQTLR-VQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDN 232
SGS+ + R +T++ V++ K+ + G + + + + +
Sbjct: 3 SGSSGPITDERVYESIGHYGGETVKIVRIEKA-RDIPLGATVRNEMDSVIISRIVK---G 58
Query: 233 NASPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
A+ + L EGD +L+IN G V E L+ L+ + +
Sbjct: 59 GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPSSG 113
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 55.4 bits (134), Expect = 5e-10
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 52 RFITFQKE--GSVGIRLTGGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGIT 108
R + FQK +GI L V + G QG L GD+I ++N + + T
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62
Query: 109 REEAVLFLLSLQDQIHLIVQNRRDEY 134
E+ L ++ I + E+
Sbjct: 63 VEQLQKMLREMRGSITFKIVPSYREF 88
Score = 43.1 bits (102), Expect = 1e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 147 HIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVR 186
+ V D I NG+S+ N ++LR+ ++T K+
Sbjct: 43 TLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82
Score = 39.6 bits (93), Expect = 2e-04
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 201 RVQLSKSRKKDDFGIIL----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTD 256
VQ K+ + GI L N V + H L GD + +IN
Sbjct: 4 LVQFQKN-TDEPMGITLKMNELNHCIVARIMH---GGMIHRQGTLHVGDEIREINGISVA 59
Query: 257 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQE 290
+V++ +K++ + ++ I VP +Y+E
Sbjct: 60 NQTVEQLQKMLREMRGSITFKI---VP---SYRE 87
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 58.4 bits (140), Expect = 6e-10
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 60 GSVGIRLTGG----------NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITR 109
+G ++GG + GIFVT VQP PAS + LQPGDKI++ N I
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEH 60
Query: 110 EEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFH 147
+AV L + Q+ + LI+ R +
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDG 98
Score = 41.1 bits (95), Expect = 3e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQT 199
++ D+I+ ANG S N+E+G AV +L+ +TV L + R + A E +
Sbjct: 41 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRV 92
Score = 29.9 bits (66), Expect = 1.6
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 62 VGIRLTGGNKVGIFVTAVQPGSPASLQGLQPG-DKILKVNDMDMKGITREEA 112
+ TGGN T S A++ GL+PG D + V + +
Sbjct: 136 ITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYS 187
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 54.7 bits (132), Expect = 1e-09
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 48 EPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
+ + +T K G + + GL GD I+++N +++
Sbjct: 8 QAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQN 64
Query: 107 ITREEAVLFLLSLQ--DQIHLIVQ 128
++ E V L + LI+
Sbjct: 65 LSHTEVVDILKDCPIGSETSLIIH 88
Score = 43.5 bits (103), Expect = 9e-06
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRR 188
+ D I+ N +++N+ + V +L+D GS +L + R
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGI-ILGNK--IFVKEVTHRLDNNASPGTHQLAEGDVLLK 249
+S + + + + + K + FG I + VK++ G L EGD++++
Sbjct: 5 SSGQAELMTLTIVKGAQ--GFGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVE 56
Query: 250 INNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTA 287
IN +S E ++ + SL I R +
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSSG 96
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 53.6 bits (129), Expect = 2e-09
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 59 EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLS 118
+G + G + ++ G A G++ G +I+++N + E+ V L +
Sbjct: 23 RYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 77
Query: 119 LQDQIHLIV 127
+IH+
Sbjct: 78 AVGEIHMKT 86
Score = 42.4 bits (100), Expect = 2e-05
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 123 IHLIVQNRRDEYEHVVASQRG------------DSFHIKVNDRIMSANGLSLENVEYGTA 170
+ ++ R D + S + + ++V RI+ NG S+ +
Sbjct: 12 VTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKI 71
Query: 171 VQVLRDSGSTVTLKVRRRIVLPAS 194
V +L ++ + +K +PA+
Sbjct: 72 VHILSNAVGEIHMK-----TMPAA 90
Score = 35.1 bits (81), Expect = 0.008
Identities = 3/38 (7%), Positives = 16/38 (42%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 278
+ G +++IN ++ ++ ++ ++ +
Sbjct: 49 VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 54.6 bits (131), Expect = 2e-09
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 37 GSPDLFSIFFVEPDPRFITFQKEGSV----GIRLTGGNKVG---IFVTAVQPGSPASLQG 89
S I + I +K + G L+ + G ++V +V+ AS +G
Sbjct: 2 SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG 61
Query: 90 LQPGDKILKVNDMDMKGITREEAVLFL 116
L+ GD+IL++N+ + FL
Sbjct: 62 LKAGDEILEINNRAADALNSSMLKDFL 88
Score = 38.9 bits (90), Expect = 7e-04
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 199 TLRVQLSKSRKKDD-FGIIL-------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
T + + KS D +G L +++V V AS L GD +L+I
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKE--TGLASKK--GLKAGDEILEI 71
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 286
NN D ++ + + L + E+
Sbjct: 72 NNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGV 107
Score = 33.5 bits (76), Expect = 0.055
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEP 197
+K D I+ N + + + L + ++ + P
Sbjct: 62 LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVESGP 111
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 53.4 bits (129), Expect = 2e-09
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 49 PDPRFITFQK-EGSVGIRLTGG-NKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
+ + K G + G V + +GL+ GD I++VN +++
Sbjct: 2 MELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQA 59
Query: 107 ITREEAVLFLLSLQ--DQIHLIVQNR 130
+T + V L+ ++ L+VQ +
Sbjct: 60 LTHNQVVDMLVESPKGSEVTLLVQRQ 85
Score = 44.2 bits (105), Expect = 5e-06
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDS--GSTVTLKVRRR 188
+K D I+ N +++ + + V +L +S GS VTL V+R+
Sbjct: 43 LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85
Score = 38.8 bits (91), Expect = 4e-04
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 197 PQTLRVQLSKSRKKDDFGIIL-----GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKIN 251
+ + V + K FG + G VK++ +D+ S G L EGD+++++N
Sbjct: 2 MELITVHIVKGPMG--FGFTIADSPGGGGQRVKQI---VDSPRSRG---LKEGDLIVEVN 53
Query: 252 NHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
++ + ++ S +++L ++R+
Sbjct: 54 KKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 53.4 bits (128), Expect = 3e-09
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 52 RFITFQKEGSV----GIRLTGGNKVG---IFVTAVQPGSPASLQGLQPGDKILKVNDMDM 104
I +K + G L+ + G ++V +V+ AS +GL+ GD+IL++N+
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67
Query: 105 KGITREEAVLFLLSLQDQIHLIVQNRRD 132
+ FL Q + L+V+ +
Sbjct: 68 DALNSSMLKDFL--SQPSLGLLVRTYPE 93
Score = 34.9 bits (80), Expect = 0.011
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 199 TLRVQLSKSRKKDD-FGIIL-------GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
T + + KS D +G L +++V V AS L GD +L+I
Sbjct: 7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKE--TGLAS--KKGLKAGDEILEI 62
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
NN D ++ + + S+ L L +R
Sbjct: 63 NNRAADALNSSMLKDFL--SQPSLGLLVRT 90
Score = 30.3 bits (68), Expect = 0.38
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 138 VASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+AS++G +K D I+ N + + + L S ++ L VR
Sbjct: 47 LASKKG----LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLLVRTY 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 73/483 (15%), Positives = 131/483 (27%), Gaps = 145/483 (30%)
Query: 94 DKILKVNDMDMKGITREEAVLFLL-SLQDQIHLIVQN-----RRDEYEHVVASQRGDSFH 147
D I+ D L L +L + +VQ R Y+ ++
Sbjct: 52 DHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIK 99
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVT---------LKVRRRIVLPASPEP- 197
+ S+ Y L + R+ +L P
Sbjct: 100 TEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 198 -----------QTLRVQLSKSRK---KDDFGII---LGNKIFVKEVTHRLDN---NASPG 237
+ + + S K K DF I L N + V L P
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 238 THQLAEGDVLLKINNHPTDGMSVKEA-RKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 296
++ +K+ H S++ R+L+ S + L + V Q +
Sbjct: 213 WTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYENCLLVLLNV------QNAKAW-- 259
Query: 297 KENNYMDP-----LSTNYSSQNLYVQPPTRG------GPNNLLEDKS-NLV--------- 335
N + L+T + ++ T L D+ +L+
Sbjct: 260 ---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 336 --PRAGRSRNPLLDVSLSQLDRPVSPINNSMDSLGRNNQEVQKGIIPNKARAEELATAQF 393
PR + NP LS + + + D+ N + II
Sbjct: 317 DLPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTII-------------- 359
Query: 394 NATKKELSASESRGSF-----FKRRRNSHRRSKSLSKDHWDDVVFGDS------------ 436
++ L +E R F F ++H + LS W DV+ D
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSL 416
Query: 437 ISKFPAYERVSLRHPGFIRPVVLFGPVAD--------LARDKLLKDF-PDKFSAPRKFNF 487
+ K P +S+ ++ L + + + + K F D P +
Sbjct: 417 VEKQPKESTISI-PSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 488 ILW 490
Sbjct: 473 FYS 475
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 55.9 bits (135), Expect = 2e-08
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 12/114 (10%)
Query: 48 EPDPRFITFQKE-----GSVGIRLTG------GNKVGIFVTAVQPGSPASLQGLQPGDKI 96
D F S G T ++ V PGSPA GLQ G I
Sbjct: 55 SMDNGFSKIDSLLDEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWI 114
Query: 97 LKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKV 150
+ +N + E + + Q QI + + ++ E +
Sbjct: 115 MMMNGDYITKKVESELL-QGSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPA 167
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 53.4 bits (129), Expect = 1e-07
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 60 GSVGIRLTGGNKVGIFVTAVQP--GSPASLQGLQPGDKILKVNDMDMKGITREEAV 113
VG+ +T G V + P G PA G + GD I+ V+ +KG++ +
Sbjct: 85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVS 140
Score = 38.4 bits (90), Expect = 0.005
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 244 GDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRRE 281
GDV++ ++ GMS+ + L+ ++ + +
Sbjct: 120 GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158
Score = 35.3 bits (82), Expect = 0.048
Identities = 6/42 (14%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLR-DSGSTVTLKVRRR 188
+ D I++ +G +++ + +L+ ++ S V + +
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 53.1 bits (128), Expect = 2e-07
Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 58/209 (27%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G FV+ V P S A+ G++ GD I +N +
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA------------------------ 322
Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
V + + V ++ + +LRD G V + + L
Sbjct: 323 ALRAQVGT-------MPVGSKL---------------TLGLLRD-GKQVNVNL----ELQ 355
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNK-IFVKEVTHRLDNNASPGTHQLAEGDVLLKIN 251
S + Q + + + ++ + V V L +GDV++ N
Sbjct: 356 QSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNV----KTGTPAAQIGLKKGDVIIGAN 411
Query: 252 NHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
++ E RK++DS L+L I+R
Sbjct: 412 QQAVK--NIAELRKVLDSKPSVLALNIQR 438
Score = 44.2 bits (105), Expect = 1e-04
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGI 107
G G+ V V+ G+PA+ GL+ GD I+ N +K I
Sbjct: 380 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI 418
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 51.9 bits (125), Expect = 4e-07
Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 69/218 (31%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G V+ V P SPA L GL+ GD I ++ND +
Sbjct: 283 GALVSQVNPNSPAELAGLKAGDIITQINDTK-----------------------ITQATQ 319
Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
+ ++ ++V + + V RD +TL V+
Sbjct: 320 -VKTTISL-------LRVGSTV---------------KIIVERD-NKPLTLSA----VVT 351
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLD------NNASPGT----HQLA 242
+ Q +S +G+ L F +E + AS + +
Sbjct: 352 DIKSHE----QKLQSNNPFLYGLALRA--FEQESPPHGNVIGVQVVGASENSAGWRAGIR 405
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
GD+++ N P VK + + K++L + + R
Sbjct: 406 PGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLR 441
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 51.9 bits (125), Expect = 4e-07
Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 53/208 (25%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G FV+ V PGS ++ G++ GD I +N +
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA------------------------ 299
Query: 133 EYEHVVASQRGDSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLP 192
E +A+ + ++ + +LR+ G + ++V
Sbjct: 300 ELRSRIAT-------TEPGTKV---------------KLGLLRN-GKPLEVEVTLDTSTS 336
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
+S + + L + D G I + EV + L + DV++ +N
Sbjct: 337 SSASAEMITPALEGATLSDGQLKDGGKGIKIDEV----VKGSPAAQAGLQKDDVIIGVNR 392
Query: 253 HPTDGMSVKEARKLIDSSKEKLSLTIRR 280
+ S+ E RK++ + ++L I R
Sbjct: 393 DRVN--SIAEMRKVLAAKPAIIALQIVR 418
Score = 43.4 bits (103), Expect = 1e-04
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 69 GNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVL 114
GI + V GSPA+ GLQ D I+ VN + I VL
Sbjct: 360 DGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL 405
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 48.3 bits (115), Expect = 4e-07
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 48 EPDPRFITFQK-EGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
I K G + + GLQ GD I ++ +++
Sbjct: 10 AGLLVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQ---GLQKGDIIKEIYHQNVQN 66
Query: 107 ITREEAVLFL--LSLQDQIHLIVQ 128
+T + V L + + L++
Sbjct: 67 LTHLQVVEVLKQFPVGADVPLLIL 90
Score = 43.7 bits (103), Expect = 1e-05
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRD--SGSTVTLKVRRRIVLPASPEPQT 199
++ D I +++N+ + V+VL+ G+ V L + R + +
Sbjct: 50 LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103
Score = 42.9 bits (101), Expect = 3e-05
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 193 ASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINN 252
+ + L K K FG + + ++V LD+ G L +GD++ +I +
Sbjct: 7 YKKAGLLVTIPLIKGPK--GFGFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYH 61
Query: 253 HPTDGMSVKEARKLI--DSSKEKLSLTIRREVPRPTAYQESTTLPGKEN 299
++ + +++ + L I R P P+ + + G
Sbjct: 62 QNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP-PSPTKTAKMGSGSGQ 109
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 50.6 bits (120), Expect = 8e-07
Identities = 30/256 (11%), Positives = 71/256 (27%), Gaps = 31/256 (12%)
Query: 377 GIIPNKARAEELATAQFNATKKELSASESRGSFFKRRRNSHRRSKSLSKDHWDDVVFGDS 436
G IP+ + E + K+ S+ + F ++ + V+ G S
Sbjct: 93 GFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPS-MRPVVLVGPS 151
Query: 437 ISKFPAYERVSLR----HPG-FIRPVVLFGPVAD--LARDKLLKDFPDKFSAPRKFNFIL 489
+ + + + F + + AD LA+ +L + P K I
Sbjct: 152 LKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNN-------PSKHAIIE 204
Query: 490 WATIKDT-AMYQSSKEPGMYQGKDSMYQGK-----DSMYQGKESMYQGKDS---MYQGKD 540
+ + + A QS E + + + + + +Y
Sbjct: 205 RSNTRSSLAEVQSEIERIFELAR----TLQLVVLDADTINHPAQLSKTSLAPIVVYVKIS 260
Query: 541 SMYQGKDSMYQGKDIKKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEK 600
S + + + + + KL + +F + + ++ + +E
Sbjct: 261 SPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEA 320
Query: 601 ---QQSSPVWISETKS 613
P
Sbjct: 321 YWKATHPPSSNLPNPL 336
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 46.8 bits (111), Expect = 2e-06
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 57 QKEGSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFL 116
G + G G+ + +V PGSPAS + L PG I +N M +T A L
Sbjct: 10 HSSGRENLYFQGHQPDGVQIDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAALKT 68
Query: 117 LSLQDQIHLIVQNRRDEYEHVVASQRGDS 145
+S+ + I++ + + +S
Sbjct: 69 ISVGEVINITT--DQGTFHLKTGRNPNNS 95
Score = 33.3 bits (76), Expect = 0.074
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 205 SKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKEAR 264
S R+ F + + + V SP + L G V+ IN PT ++
Sbjct: 11 SSGRENLYFQGHQPDGVQIDSVV-----PGSPASKVLTPGLVIESINGMPTS--NLTTYS 63
Query: 265 KLIDSSK--EKLSLTIRRE 281
+ + E +++T +
Sbjct: 64 AALKTISVGEVINITTDQG 82
Score = 31.4 bits (71), Expect = 0.30
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRR---RIVLPASPEPQT---LR 201
+ I S NG+ N+ +A G + + + + +P + +
Sbjct: 42 LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTFHLKTGRNPNNSSRAYMG 101
Query: 202 VQLSKS-RKKDDFGIILGNKI 221
++ S R +D +LG+ +
Sbjct: 102 IRTSNHLRVRDSVASVLGDTL 122
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 47.8 bits (113), Expect = 3e-06
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 60 GSVGIRLTGGNKVGIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLLS 118
S + + GG G V VQ SP GL+P D I+ +N + L +
Sbjct: 4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63
Query: 119 LQDQIHLIVQNRRDEYEHVV 138
++ + +++ + +
Sbjct: 64 VEKPVKMLIYSSKTLELRET 83
Score = 37.0 bits (85), Expect = 0.010
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 73 GIFVTAVQPGSPASLQGLQP-GDKILKVNDMDMKGITREEAVLFLL---SLQDQIHLIVQ 128
V V+ SPA+L GL+P D I+ + + E LF L + L V
Sbjct: 113 VWHVLEVESNSPAALAGLRPHSDYIIGAD-----TVMNESEDLFSLIETHEAKPLKLYVY 167
Query: 129 NRRDE 133
N +
Sbjct: 168 NTDTD 172
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 45.4 bits (108), Expect = 3e-06
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G+ + V GSPA GL+PGD IL + + + + E V + Q Q+ + + RR
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQLAVQI--RRG 90
Score = 27.7 bits (62), Expect = 5.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
L GDV+L I V+ A + ++ + +L++ IRR
Sbjct: 53 LRPGDVILAIGEQM-----VQNAEDVYEAVRTQSQLAVQIRRG 90
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 45.0 bits (106), Expect = 3e-06
Identities = 9/63 (14%), Positives = 20/63 (31%)
Query: 76 VTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 135
V + S A+ + PG ++ V+ ++ L + + V +
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQR 65
Query: 136 HVV 138
V
Sbjct: 66 RDV 68
Score = 27.6 bits (61), Expect = 3.9
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKS 207
I + + +G+ + + V + + T+ V S + + +++ L
Sbjct: 20 IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAP----FGSDQRRDVKLDLRHW 75
Query: 208 RKKDDFGIILG 218
+ D +
Sbjct: 76 AFEPDKEDPVS 86
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 44.4 bits (105), Expect = 5e-06
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 52 RFITFQKEGSVGIRLT-GGNKVGIFVTAVQPGSPASLQG-LQPGDKILKVNDMDMKGITR 109
R + +K + +T + + + G + QG L GD I +VN + G
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDP 66
Query: 110 EEAVLFLLSLQDQIHLIV 127
L + + L +
Sbjct: 67 RALQELLRNASGSVILKI 84
Score = 37.4 bits (87), Expect = 0.001
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 194 SPEPQTLRVQLSKSRKKDDFGIIL---GNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKI 250
S V + K + G+ G ++ + + H L GD++ ++
Sbjct: 2 SSGSSGRMVGIRK-TAGEHLGVTFRVEGGELVIARILH---GGMVAQQGLLHVGDIIKEV 57
Query: 251 NNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 287
N P G + ++L+ ++ + L I + P++
Sbjct: 58 NGQPV-GSDPRALQELLRNASGSVILKI---LSGPSS 90
Score = 37.0 bits (86), Expect = 0.002
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
+ V D I NG + + + ++LR++ +V LK+
Sbjct: 48 LHVGDIIKEVNGQPVGS-DPRALQELLRNASGSVILKILSG 87
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 43.6 bits (103), Expect = 8e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 76 VTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+ VQP S AS GLQ GD+I+ V+ +
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 61/437 (13%), Positives = 128/437 (29%), Gaps = 147/437 (33%)
Query: 176 DSGST--VTLK---VRRRIVLPASPEP--QTLRVQLSKSRKKDDFGIILGNKI------- 221
D+ ST +TL + +++P + L+ Q +K + G ++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 222 --FVKEVTHRLDNNASPGTHQLA-------EGDVLLKINNH------PTDGMSVKEARKL 266
F+ V+ ++ + Q+ E L + H + + K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 267 IDSSKEKLSLTIRREVPRPT-------AYQESTTLP------GKENNYMDPLSTNYSSQN 313
+ + + +R + + + + L G ++Y + L ++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------RD 175
Query: 314 LYVQPPTRGGP-----NNLLEDKSNLVPRAGRSRNPLLDVS--LSQLDR----------P 356
LY G L + A + L++ L P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 357 VS-PIN---------NSMDSLGRNNQEVQKGIIPNKARAEELATAQFNATKKELSASESR 406
+S P+ + LG E++ + ++ L TA ++ ++S
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA------IAETDSW 289
Query: 407 GSFFKRRRN-----------SHRR------SKSLSKDHWDD---------VVFG------ 434
SFF R + S+ +D ++ +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 435 -DSISKF----PAYERVSL------RHPGFIRPVVLFGPVADLAR-DKLLKDFPDKFSAP 482
D ++K PA ++V + ++ +V+ GP L + L+ K AP
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKN------LVVSGPPQSLYGLNLTLR----KAKAP 399
Query: 483 ------------RKFNF 487
RK F
Sbjct: 400 SGLDQSRIPFSERKLKF 416
Score = 38.1 bits (88), Expect = 0.012
Identities = 43/238 (18%), Positives = 70/238 (29%), Gaps = 91/238 (38%)
Query: 65 RLTGGNKVGI--------FVTAVQPGSPASLQGLQPG-DKILKVNDMDMKGITREEAVLF 115
L G +V I V + G P SL GL K + +D
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSGLD------------ 403
Query: 116 LLSLQDQIHLIVQNRRDEYEHVVASQRGDS-----------FH----IKVNDRIMSANGL 160
Q+R + S+R FH + +D I L
Sbjct: 404 ------------QSR------IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--L 443
Query: 161 SLENVEYGT---AVQV--------LRDSGSTVTLKVRRRIVLPASPEPQTLRVQLSKSRK 209
NV + + V LR +++ ++ I+ L V+ + +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII--------RLPVKWETTTQ 495
Query: 210 KD-----DFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDGMSVKE 262
DFG G + +THR N G + G + + +P D K+
Sbjct: 496 FKATHILDFG--PGGASGLGVLTHR--NKDGTGVRVIVAGTL----DINPDDDYGFKQ 545
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 43.4 bits (103), Expect = 1e-05
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
GI+V V P SP+ G+Q GD I+KVN + + + + + + L V RR
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNG---RPLVDSSELQEAVLTESPLLLEV--RRG 90
Score = 28.4 bits (64), Expect = 3.0
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 280
+ +GD+++K+N P S E ++ + + L L +RR
Sbjct: 53 IQDGDIIVKVNGRPLVDSS--ELQEAVLTES-PLLLEVRR 89
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 45.2 bits (108), Expect = 4e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKG 106
GI V V P PA+ G+Q D I+ V++
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 45.0 bits (107), Expect = 4e-05
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 60 GSVGIRLTGGNK-VGIFVTAVQPGSPASLQGLQPGDKILKVND 101
S+G+++T +G + V G A+ G+ G + KV+D
Sbjct: 229 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDD 271
Score = 28.0 bits (63), Expect = 8.5
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
+ +G V+ K+++ P + + S ++LT +
Sbjct: 260 VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDP 300
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 41.8 bits (98), Expect = 5e-05
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 68 GGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
+G V+ + GLQ GD + +N +D+ + ++ ++ L V
Sbjct: 33 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92
Query: 128 QNRRD 132
+ RD
Sbjct: 93 E--RD 95
Score = 29.5 bits (66), Expect = 1.2
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
L +GD+ + +N L S ++SLT+ R+
Sbjct: 55 LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERD 95
Score = 28.4 bits (63), Expect = 2.6
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 148 IKVNDRIMSANGLSLENV-EYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQL 204
++ D ++ NGL L + T Q + + + ++L V R + + +Q
Sbjct: 55 LQDGDMAVALNGLDLTDPNVMNTLFQSMNE-MTEMSLTVERD------GQQHDVYIQF 105
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 41.1 bits (97), Expect = 7e-05
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
GI+ ++V PA ++ GDKI+ + + +
Sbjct: 2 GIYASSVVENMPAK-GKIEVGDKIISADGKNYQ 33
Score = 29.5 bits (67), Expect = 0.71
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
P ++ GD ++ + S ++ I S K +K++L I RE
Sbjct: 12 MPAKGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIERE 58
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.7 bits (97), Expect = 7e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 52 RFITFQK--EGSVGIRLTGG-----NKVGIFVTAVQPG--SPASLQGLQPGDKILKVNDM 102
I+ E G +T + V V SP + + PGD+IL++N
Sbjct: 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76
Query: 103 DMKGITREEAVLFLLSLQDQIHLIVQ 128
++ + EE + + L+++
Sbjct: 77 PVRTLRVEEVEDAIKQTSQTLQLLIE 102
Score = 38.6 bits (89), Expect = 8e-04
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 192 PASPEPQTLR-VQLSKSRK-KDDFGIIL-------GNKIFVKEVTHRLDNNASPGTHQLA 242
P ++ + + + + + F + + + VKEV + + + +
Sbjct: 8 VQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEV--NRMHISPNNRNAIH 65
Query: 243 EGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQES 291
GD +L+IN P + V+E I + + L L I + P P +S
Sbjct: 66 PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHD-PVPQRLDQS 113
Score = 32.1 bits (72), Expect = 0.14
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 148 IKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRR 188
I DRI+ NG + + ++ + T+ L +
Sbjct: 64 IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHD 104
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 40.7 bits (96), Expect = 9e-05
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
G++V +V P PA+ L+ GD+I ++ +
Sbjct: 6 GVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPIN 37
Score = 29.6 bits (67), Expect = 0.68
Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 281
P +L GD + I+ P + + ++ + + +++ +T R+
Sbjct: 16 MPAAGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRD 62
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 43.8 bits (104), Expect = 9e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIVQNRRD 132
G+ + V GSPA GL+PGD IL + + + + E V + Q Q+ + + RR
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQLAVQI--RRG 311
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 44.2 bits (103), Expect = 1e-04
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 67 TGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLI 126
+ G+ V V A GL GDKI+ ++ + + +L D + +
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE-QSVKRILERYIPGDTVTIH 549
Query: 127 VQNRRDEYEHV 137
RRDE +
Sbjct: 550 AF-RRDELMTL 559
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 43.0 bits (102), Expect = 2e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
G ++ V P +PA GL+ D I+ +N +
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 287
Score = 28.8 bits (65), Expect = 5.3
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKENN 300
L E DV++ IN + + +I L++ +RR + E++
Sbjct: 272 LKENDVIISINGQSVVSAN--DVSDVIKRES-TLNMVVRRGNEDIMITVIPEEIDPLEHH 328
Query: 301 YM 302
+
Sbjct: 329 HH 330
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 39.8 bits (93), Expect = 2e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 68 GGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSLQDQIHLIV 127
+G V+ + GLQ GD + +N +D+ + ++ ++ L V
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74
Query: 128 QNRRD 132
+ RD
Sbjct: 75 E--RD 77
Score = 29.4 bits (66), Expect = 0.90
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 241 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRRE 281
L +GD+ + +N L S E ++SLT+ R+
Sbjct: 37 LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERD 77
Score = 28.6 bits (64), Expect = 1.5
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 144 DSFHIKVNDRIMSANGLSLENVEYGTAVQVLRDSGSTVTLKVRRRIVLPASPEPQTLRVQ 203
+S ++ D ++ NGL L + + + + ++L V R + + +Q
Sbjct: 33 ESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD------GQQHDVYIQ 86
Query: 204 L 204
Sbjct: 87 F 87
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 39.6 bits (93), Expect = 3e-04
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
G++V +V+ PA+ L GD I +++ K
Sbjct: 8 GVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFK 39
Score = 31.1 bits (71), Expect = 0.22
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 235 SPGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRR 280
P L GD++ +I+ + S +E I S K + + + +
Sbjct: 18 VPAADVLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKH 63
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 42.2 bits (100), Expect = 3e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 73 GIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
G FV+ V PGS ++ G++ GD I +N +
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN 296
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 39.5 bits (93), Expect = 6e-04
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 66 LTGGNKVGIFVTAVQPGSPASLQGLQPGDKILKVNDMDMK 105
+ G+ V +VQ PA+ L+ D I KV+D ++
Sbjct: 51 IPSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA 89
Score = 28.3 bits (64), Expect = 3.9
Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 198 QTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPGTHQLAEGDVLLKINNHPTDG 257
L + ++ + + + + V+ V + P L + DV+ K+++
Sbjct: 36 VNLSNVSTSDIRRLNIPSNVTSGVIVRSVQ-----SNMPANGHLEKYDVITKVDDKEIAS 90
Query: 258 MSVKEARKLIDSSK--EKLSLTIRRE 281
+ + + + + + + +T R
Sbjct: 91 ST--DLQSALYNHSIGDTIKITYYRN 114
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 34.5 bits (80), Expect = 0.099
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 11/44 (25%)
Query: 73 GIFVTAVQPGSPASLQGLQP-----------GDKILKVNDMDMK 105
G+ V P PA GLQ GD I VN +
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS 295
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 33.6 bits (77), Expect = 0.15
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 31 VTAVQPGSPDLFSIFFVEPDPR------FITFQKEGSVGIRLT---------GGNKVGIF 75
VT+V+ + LFS P F+ G + ++ +
Sbjct: 21 VTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFY 80
Query: 76 VTAVQPG--SPASLQGLQPGDKIL 97
V G + LQ ++ G++I+
Sbjct: 81 SIKVPDGPLTSR-LQHIKVGEQII 103
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin,
oxidoreductase, flavoprotein; HET: FAD; 1.70A
{Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A*
3fpk_A*
Length = 248
Score = 33.0 bits (76), Expect = 0.22
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 31 VTAVQPGSPDLFSIFFVEPDPRFITFQKEGSVGIRLTGGNK----------------VGI 74
VT VQ + LFS+ P F Q + L + +
Sbjct: 9 VTKVQNWTDALFSLTVHAPVLPFTAGQ---FTKLGLEIDGERVQRAYSYVNSPDNPDLEF 65
Query: 75 FVTAVQPG--SPASLQGLQPGDKIL 97
++ V G SP L L+PGD++
Sbjct: 66 YLVTVPDGKLSPR-LAALKPGDEVQ 89
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.36
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 551 QGKDI-KKEVKIKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSS 604
Q K + + + S+ +E+ W + + W ++ E +EK + +
Sbjct: 94 QRKRLQELD------AASKVMEQEWREKAKKDL-----EEWNQRQSEQVEKNKIN 137
Score = 28.2 bits (62), Expect = 6.2
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 381 NKARAEELATAQFNATKKEL--SASESRGSFFKRRRNSHRRSKSLSKDH 427
+ R +EL A ++E A + + +R+ ++K ++
Sbjct: 94 QRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 29.8 bits (68), Expect = 2.3
Identities = 15/92 (16%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 186 RRRIVLPASPEPQTLR--VQLSKSRKKDDFG--IILGNKIFVKEVTHRLDNNA----SPG 237
+ I LP + + +TL+ ++ + +++GN+ +K + LD + P
Sbjct: 16 NKTIALPETEDIRTLQAAAKI----LERGIADIVLVGNEADIKALAGDLDLSKAKIVDPK 71
Query: 238 THQLAE--GDVLLKINNHPTDGMSVKEARKLI 267
T++ + + ++ H G++++ A +++
Sbjct: 72 TYEKKDEYINAFYELRKH--KGITLENAAEIM 101
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.5 bits (67), Expect = 2.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 561 IKLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
+L + S+ + ++H F ++ +GVD +K +E ++ SSP W+
Sbjct: 150 QQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197
>2hwv_A DNA-binding response regulator VICR; essential response regulator,
C-terminal domain, DNA-binding transcription; 1.90A
{Enterococcus faecalis}
Length = 121
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 568 QKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
L+ VW + + G + VDV R+ RE IE S P ++
Sbjct: 67 HLLQTVWGYDYFGDVRT--VDVTVRRLREKIEDSPSHPTYL 105
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn-
helix motif, DNA-binding domain, phosphorylation,
transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A
2d1v_A
Length = 120
Score = 28.4 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
++ + L+ VW + + G + VDV R+ RE IE S P +I
Sbjct: 54 QVMTREHLLQTVWGYDYFGDVRT--VDVTIRRLREKIEDDPSHPEYI 98
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A
{Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 29.3 bits (66), Expect = 3.1
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 31 VTAVQPGSPDLFSIFFVEPDP-RF-------ITFQKEGSVGIR------LTGGNKVGIFV 76
V +V + LFS RF I + +G +R + F
Sbjct: 8 VLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFS 67
Query: 77 TAVQPGSPAS--LQGLQPGDKIL 97
V G P + LQ L+ GD+++
Sbjct: 68 IKVPDG-PLTSRLQHLKEGDELM 89
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation;
3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Length = 86
Score = 27.6 bits (61), Expect = 3.3
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 104 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKVNDRIMSANGLSLE 163
++ RE + L + +++ ++V RR+E A + ++ ++ A+G+
Sbjct: 17 LRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPN 76
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.4 bits (63), Expect = 3.4
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 4/75 (5%)
Query: 178 GSTVTLKVRRRIVLPASPEPQTLRVQLSKSRKKDDFGIILGNKIFVKEVTHRLDNNASPG 237
G L R + + V +S + K E
Sbjct: 21 GDEAELPCR----ISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 238 THQLAEGDVLLKINN 252
+ EG V L+I N
Sbjct: 77 KESIGEGKVALRIQN 91
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory
system, transcription regulation, phosphorylation, OMPR
family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Length = 238
Score = 29.0 bits (66), Expect = 3.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 568 QKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
LE+VW + L V+V ++ R +EK +P +
Sbjct: 177 VLLEQVWGYRHPADTRL--VNVHVQRLRAKVEKDPENPTVV 215
>2k4j_A Putative transcriptional regulator; response regulator, acid
resistance, DN binding, phosphoprotein, transcription
regul; NMR {Helicobacter pylori}
Length = 115
Score = 27.6 bits (62), Expect = 4.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 562 KLFEQSQKLEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
+F + + S + +DV + R IEK P +I
Sbjct: 59 YVFSRESIAIESESINPESSNKS--IDVIIGRLRSKIEKNPKQPQYI 103
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 29.0 bits (65), Expect = 4.9
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 23/86 (26%)
Query: 31 VTAVQPGSPDLFSIFFVEPDP-RFITFQKEGSVGIRLTGGNK----------------VG 73
V +V + LFS RF + + L K +
Sbjct: 24 VLSVHHWTDTLFSFTCTRDQALRFNNGE---FTMVGLEVDGKPLTRAYSIVSPNYEEHLE 80
Query: 74 IFVTAVQPG--SPASLQGLQPGDKIL 97
F VQ G + LQ L+ GD +L
Sbjct: 81 FFSIKVQNGPLTSR-LQHLKVGDPVL 105
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 29.0 bits (64), Expect = 5.3
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 13/70 (18%)
Query: 75 FVTAVQPGSPASLQGLQPGDKILKVNDMDMKGITREEAVLFLLSL-------------QD 121
F+ A L L I + D G T EEA+
Sbjct: 870 FLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNW 929
Query: 122 QIHLIVQNRR 131
H + ++ R
Sbjct: 930 LAHNVSKDNR 939
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.5
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 556 KKEVKIKLFEQSQKL 570
K+ +K KL + S KL
Sbjct: 19 KQALK-KL-QASLKL 31
Score = 27.6 bits (60), Expect = 7.7
Identities = 4/16 (25%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 551 QGKDIKK-EVKIKLFE 565
+ + +KK + +KL+
Sbjct: 18 EKQALKKLQASLKLYA 33
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged
helix, osmoregulation; 1.95A {Escherichia coli} SCOP:
a.4.6.1 PDB: 1odd_A 2jpb_A
Length = 110
Score = 27.2 bits (61), Expect = 7.0
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 570 LEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
+ ++ +DV + R ++E+ + P +I
Sbjct: 57 MNLARGREYSAME--RSIDVQISRLRRMVEEDPAHPRYI 93
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 28.2 bits (64), Expect = 7.7
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 18/60 (30%)
Query: 73 GIFVTAVQPGSPASLQGLQPG--------------DKILKVNDMD----MKGITREEAVL 114
+ + +QP +S+ G++ D++L ++ D M+ + E +
Sbjct: 192 PVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIF 251
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 28.4 bits (64), Expect = 7.9
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 68 GGNKVGIFVTAV-QPGSPASLQGLQPGDKIL 97
++ + + P S G + GD +L
Sbjct: 138 DKIEMFVITAGIGIAEHPVSDAGAKVGDAVL 168
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 28.2 bits (64), Expect = 8.2
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 360 INNSMDSLGRNNQEVQKGIIPNKARAEELATAQF 393
+ N++ L +Q I P R +EL F
Sbjct: 215 VGNALKKLINPSQWPLLEINPQL-RPQELTVEDF 247
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D swapping, two
component system; 2.03A {Mycobacterium tuberculosis
H37RV}
Length = 230
Score = 27.8 bits (63), Expect = 9.1
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 570 LEKVWSHVFTGTITLSGVDVWYRKTRELIEKQQSSPVWI 608
+++VW + G +DV ++ R IE ++PV +
Sbjct: 182 IDRVWGADYVGDTKT--LDVHVKRLRSKIEADPANPVHL 218
>3opu_A SPAP; cell adhesion; 2.18A {Streptococcus mutans}
Length = 339
Score = 28.3 bits (62), Expect = 9.2
Identities = 9/86 (10%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 501 SSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKEVK 560
P + + Y D Y Y G+ ++ D + + + G ++ +
Sbjct: 215 GGIIPANHSEELFEYNFYD-DYDQTGDHYTGQYKVFAKVDIILKNGVIIKSGTELTQYTT 273
Query: 561 IKLFEQSQKLEKVWSHVFTGTITLSG 586
++ + + F ++++
Sbjct: 274 AEVDTTKGAITIKFKEAFLRSVSIDS 299
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding;
HET: APC; 2.21A {Bacteriophage T4}
Length = 375
Score = 28.2 bits (62), Expect = 9.2
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 1/128 (0%)
Query: 439 KFPAYERVSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPRKFNFILWATIKDTAM 498
K Y + P LF + D A D L + D + RK T
Sbjct: 243 KSDWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMYADDEYSYRKIEAFE-TTYLKYLD 301
Query: 499 YQSSKEPGMYQGKDSMYQGKDSMYQGKESMYQGKDSMYQGKDSMYQGKDSMYQGKDIKKE 558
+ + +M + G D ++ S+YQG DS + ++
Sbjct: 302 RALFLVLDCHNKHCGKDRKTYAMEAQGVAKGAGMDHLFGIIMSLYQGYDSQEKVMCEIEQ 361
Query: 559 VKIKLFEQ 566
+K +++
Sbjct: 362 NFLKNYKK 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.380
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,209,509
Number of extensions: 556727
Number of successful extensions: 2056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 710
Length of query: 627
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 528
Effective length of database: 3,937,614
Effective search space: 2079060192
Effective search space used: 2079060192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)