Query psy9828
Match_columns 311
No_of_seqs 191 out of 535
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 20:42:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3580|consensus 100.0 4.9E-43 1.1E-47 353.0 13.5 202 1-212 459-818 (1027)
2 KOG0609|consensus 100.0 3.4E-33 7.3E-38 279.6 14.5 181 1-198 177-540 (542)
3 KOG0708|consensus 100.0 7.9E-31 1.7E-35 253.8 13.2 185 1-196 6-358 (359)
4 PF00625 Guanylate_kin: Guanyl 99.5 1E-14 2.2E-19 127.3 6.0 93 84-187 73-183 (183)
5 smart00072 GuKc Guanylate kina 99.5 2.2E-14 4.7E-19 125.8 8.0 94 84-188 73-184 (184)
6 PRK14737 gmk guanylate kinase; 99.3 6.7E-12 1.5E-16 111.7 7.3 92 84-186 74-184 (186)
7 PLN02772 guanylate kinase 99.2 4.6E-11 9.9E-16 118.5 7.9 93 84-187 206-319 (398)
8 COG0194 Gmk Guanylate kinase [ 99.1 1.1E-10 2.5E-15 105.6 7.0 93 84-187 73-183 (191)
9 KOG0707|consensus 98.9 1.1E-09 2.4E-14 101.8 5.5 94 84-188 108-223 (231)
10 TIGR03263 guanyl_kin guanylate 98.6 1.3E-07 2.8E-12 81.4 7.9 90 85-185 72-179 (180)
11 cd00071 GMPK Guanosine monopho 98.4 3E-07 6.4E-12 77.9 4.8 54 90-164 78-131 (137)
12 PRK14738 gmk guanylate kinase; 98.2 4.9E-06 1.1E-10 74.8 8.0 129 44-187 39-195 (206)
13 PRK00300 gmk guanylate kinase; 98.1 6E-06 1.3E-10 72.6 7.1 87 90-187 83-185 (205)
14 PF07653 SH3_2: Variant SH3 do 97.3 0.00014 3.1E-09 52.5 2.1 29 46-74 1-30 (55)
15 PF00018 SH3_1: SH3 domain; I 96.9 0.00046 1E-08 48.5 1.9 27 48-74 1-27 (48)
16 KOG2199|consensus 96.5 0.0012 2.5E-08 66.3 1.7 31 44-74 215-245 (462)
17 smart00326 SH3 Src homology 3 96.3 0.0039 8.4E-08 43.0 2.8 31 44-74 2-32 (58)
18 KOG3812|consensus 96.2 0.023 5E-07 56.5 8.8 75 101-186 261-353 (475)
19 PF14604 SH3_9: Variant SH3 do 96.1 0.0033 7.1E-08 44.9 1.9 26 49-74 1-26 (49)
20 cd00174 SH3 Src homology 3 dom 95.8 0.0066 1.4E-07 41.4 2.3 29 46-74 1-29 (54)
21 KOG4792|consensus 95.4 0.0089 1.9E-07 56.6 2.2 32 43-74 123-154 (293)
22 KOG2070|consensus 94.5 0.026 5.7E-07 58.3 2.9 36 39-74 12-47 (661)
23 KOG1118|consensus 94.2 0.022 4.7E-07 55.9 1.5 33 42-74 304-336 (366)
24 PRK10078 ribose 1,5-bisphospho 91.7 0.8 1.7E-05 40.1 7.6 91 90-191 78-181 (186)
25 KOG4225|consensus 91.5 0.094 2E-06 53.5 1.7 28 47-74 233-260 (489)
26 KOG2856|consensus 91.2 0.09 2E-06 52.8 1.2 33 41-73 411-443 (472)
27 KOG1029|consensus 89.9 0.25 5.4E-06 53.7 3.2 43 32-74 1034-1083(1118)
28 KOG4348|consensus 89.6 0.2 4.4E-06 51.4 2.1 32 43-74 260-291 (627)
29 TIGR02322 phosphon_PhnN phosph 89.2 1.5 3.2E-05 37.7 6.9 85 90-186 79-178 (179)
30 KOG4225|consensus 85.5 0.56 1.2E-05 48.0 2.5 34 41-74 429-462 (489)
31 KOG3875|consensus 84.3 0.2 4.3E-06 49.4 -1.3 32 43-74 267-298 (362)
32 PRK08356 hypothetical protein; 84.1 2 4.4E-05 38.0 5.1 66 111-187 99-193 (195)
33 KOG4226|consensus 81.6 0.94 2E-05 44.3 2.1 29 46-74 193-221 (379)
34 PRK04040 adenylate kinase; Pro 81.2 4.8 0.0001 36.0 6.4 24 150-184 162-187 (188)
35 KOG3551|consensus 80.0 1.3 2.9E-05 45.1 2.6 31 2-32 142-172 (506)
36 KOG3601|consensus 79.0 0.96 2.1E-05 42.4 1.2 35 42-76 161-195 (222)
37 PF00595 PDZ: PDZ domain (Also 78.6 2.3 4.9E-05 32.1 3.0 26 2-27 56-81 (81)
38 PTZ00451 dephospho-CoA kinase; 78.4 4.2 9E-05 38.4 5.3 80 103-194 118-216 (244)
39 COG1105 FruK Fructose-1-phosph 75.7 6.4 0.00014 38.8 5.9 38 98-140 155-192 (310)
40 KOG2391|consensus 74.6 41 0.00089 33.9 11.1 111 122-251 82-196 (365)
41 KOG0708|consensus 73.7 1.1 2.4E-05 44.8 0.2 37 40-76 22-59 (359)
42 KOG2675|consensus 72.0 9.4 0.0002 39.5 6.2 20 175-194 194-214 (480)
43 cd00227 CPT Chloramphenicol (C 71.6 17 0.00036 31.4 7.0 73 90-162 73-161 (175)
44 KOG3549|consensus 70.8 2.7 5.9E-05 42.5 2.1 29 2-30 112-140 (505)
45 KOG0162|consensus 69.9 3 6.6E-05 45.6 2.3 28 46-73 1053-1080(1106)
46 KOG3632|consensus 68.5 2.7 5.9E-05 47.1 1.6 26 49-74 1143-1176(1335)
47 KOG3550|consensus 64.5 8.8 0.00019 34.8 3.8 36 1-36 146-181 (207)
48 KOG1029|consensus 61.6 6.4 0.00014 43.4 2.8 32 43-74 692-723 (1118)
49 PRK14731 coaE dephospho-CoA ki 60.3 24 0.00053 31.7 6.0 74 100-186 112-202 (208)
50 KOG0515|consensus 59.6 6.2 0.00013 41.9 2.2 29 46-74 685-713 (752)
51 PRK00081 coaE dephospho-CoA ki 57.1 37 0.00079 30.2 6.5 71 103-186 107-193 (194)
52 KOG3771|consensus 56.2 7.8 0.00017 40.1 2.3 36 41-76 397-432 (460)
53 PRK14732 coaE dephospho-CoA ki 52.6 35 0.00075 30.8 5.6 74 101-187 102-191 (196)
54 KOG1843|consensus 48.1 13 0.00029 38.1 2.5 31 46-76 418-448 (473)
55 KOG4348|consensus 47.2 6.6 0.00014 40.8 0.1 27 48-74 104-130 (627)
56 PF03656 Pam16: Pam16; InterP 40.2 5.3 0.00011 34.5 -1.5 43 3-48 52-97 (127)
57 KOG0197|consensus 39.3 20 0.00044 37.2 2.2 31 46-76 13-44 (468)
58 KOG1264|consensus 37.2 16 0.00035 40.8 1.2 30 45-74 775-804 (1267)
59 PRK14734 coaE dephospho-CoA ki 37.1 99 0.0021 27.8 6.1 73 103-188 108-196 (200)
60 KOG2546|consensus 35.1 18 0.00039 37.4 1.1 28 47-74 426-453 (483)
61 KOG2222|consensus 34.9 15 0.00032 38.8 0.5 58 19-76 519-580 (848)
62 PRK06762 hypothetical protein; 34.5 2.7E+02 0.0058 23.4 8.0 71 93-163 59-150 (166)
63 KOG3557|consensus 34.4 13 0.00028 40.1 -0.1 31 44-74 500-530 (721)
64 PHA02757 hypothetical protein; 34.1 35 0.00076 26.8 2.3 24 90-113 33-56 (75)
65 KOG3442|consensus 32.3 21 0.00045 31.2 0.9 43 4-49 54-99 (132)
66 PRK14733 coaE dephospho-CoA ki 31.8 1.4E+02 0.0031 27.3 6.3 76 102-186 108-198 (204)
67 TIGR00152 dephospho-CoA kinase 30.4 1E+02 0.0022 26.9 4.9 59 101-161 104-177 (188)
68 KOG4226|consensus 26.8 52 0.0011 32.6 2.6 35 42-76 2-36 (379)
69 KOG4575|consensus 26.5 50 0.0011 36.0 2.6 32 43-74 7-38 (874)
70 KOG3601|consensus 25.9 29 0.00064 32.8 0.7 25 50-74 6-30 (222)
71 COG2082 CobH Precorrin isomera 25.7 2.9E+02 0.0063 26.0 7.2 104 92-207 59-173 (210)
72 KOG1702|consensus 25.3 37 0.0008 32.3 1.3 25 46-70 209-233 (264)
73 PRK05541 adenylylsulfate kinas 22.8 2.3E+02 0.005 24.1 5.7 65 98-162 74-156 (176)
74 PF08383 Maf_N: Maf N-terminal 22.5 66 0.0014 22.2 1.7 14 4-17 21-34 (35)
75 PF02571 CbiJ: Precorrin-6x re 21.9 1.7E+02 0.0036 27.7 5.0 63 7-75 117-181 (249)
76 KOG2996|consensus 21.7 55 0.0012 35.5 1.8 26 49-74 810-835 (865)
77 PRK00131 aroK shikimate kinase 21.4 3.1E+02 0.0068 22.6 6.1 83 93-185 65-170 (175)
78 smart00463 SMR Small MutS-rela 21.3 56 0.0012 24.8 1.4 17 1-17 4-20 (80)
79 PF01713 Smr: Smr domain; Int 20.4 48 0.001 25.4 0.8 17 1-17 1-17 (83)
No 1
>KOG3580|consensus
Probab=100.00 E-value=4.9e-43 Score=353.04 Aligned_cols=202 Identities=35% Similarity=0.635 Sum_probs=185.7
Q ss_pred CCCCCCCHHHHHHHHhcCC--CcEEEEEEeChhHHHHHHhccCCCeeEEEeccccCCCCCCCcceeeCCeeEeccc-cc-
Q psy9828 1 MDMKGITREEAVLFLLSLQ--DQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL-EN- 76 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~~~--~~VtL~vq~~~~~Y~~i~~~~~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT-~~- 76 (311)
|||+|+++|||+++|+.++ +.|+|++|.+.+.|++|+++..|||||||+||.|+++.+.+|+|++||||||+|| |+
T Consensus 459 vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~G 538 (1027)
T KOG3580|consen 459 VDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDG 538 (1027)
T ss_pred ccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCccccccccceeeeeecccCC
Confidence 6899999999999999997 9999999999999999999999999999999999999999999999999999999 98
Q ss_pred ---------c----------------------------------------------------------------------
Q psy9828 77 ---------M---------------------------------------------------------------------- 77 (311)
Q Consensus 77 ---------m---------------------------------------------------------------------- 77 (311)
|
T Consensus 539 klG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSREDLsA~~vqtkfP 618 (1027)
T KOG3580|consen 539 KLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSREDLSAVVVQTKFP 618 (1027)
T ss_pred CCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhhhhhhhceecccCC
Confidence 0
Q ss_pred --------------------------ccc------c------------cccCCCCccchHHHHHHHhcCCEEEEecCccc
Q psy9828 78 --------------------------MEE------S------------DSKKCSGIIRLSAIRDMMDRGRHGLLDITPNA 113 (311)
Q Consensus 78 --------------------------mE~------~------------~~~~~~nlTSl~AVr~ViekGKhCILDV~pqa 113 (311)
||. | ..+++.+++++.+|+.|+++.||+||||.|+|
T Consensus 619 aYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~A 698 (1027)
T KOG3580|consen 619 AYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKA 698 (1027)
T ss_pred chhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHH
Confidence 210 0 22556688999999999999999999999999
Q ss_pred cccccccCcccEEEEEcCCCHHHHHHHHccCCcc-----------------cCCCcceEEEecCCccchhhhhhccccHH
Q psy9828 114 VDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKL-----------------NSAQFFSVVIFLRAETKSNVKELRAGIPN 176 (311)
Q Consensus 114 VkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~e~-----------------~~~hlFd~vI~nddl~~~~~~~~~~~~~~ 176 (311)
|++|++.++||||||+.|.|...+|.||++|.-. ...|||+++|.++..+++ |
T Consensus 699 vdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs~nD~----------W 768 (1027)
T KOG3580|consen 699 VDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATINLNSANDS----------W 768 (1027)
T ss_pred HhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHHHHHHhhhchhheEeeeccCCCChh----------H
Confidence 9999999999999999999999999999998632 148999999999988886 9
Q ss_pred HHHHHHHHHhcCCCCeeE--------------eeeccCCCCCCCcccccC
Q psy9828 177 YIKTISLINFNGSSPSQA--------------IKFSANYDPSTKPLRSVS 212 (311)
Q Consensus 177 y~~Lk~~I~~eQs~pvWV--------------~~~~~~~~~~~~~~~~~~ 212 (311)
|..||++|++||.+++|| ++++|.++|++||++|++
T Consensus 769 yg~LK~~iq~QQ~~~vWvsEgk~dG~~~Dn~ddr~syL~a~gady~ScDS 818 (1027)
T KOG3580|consen 769 YGSLKDTIQHQQGEAVWVSEGKMDGMDDDNPDDRMSYLTAMGADYLSCDS 818 (1027)
T ss_pred HHHHHHHHHHhcCceeEeecccccCcccCCcccccccccccccccccccc
Confidence 999999999999999999 799999999999988765
No 2
>KOG0609|consensus
Probab=100.00 E-value=3.4e-33 Score=279.65 Aligned_cols=181 Identities=19% Similarity=0.349 Sum_probs=155.6
Q ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEEEeChhHHHHHHhccCCCeeEEEeccccCCCCC-------CCcceeeCCeeEecc
Q psy9828 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEK-------GEMSFRKGDVFHVIE 73 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~~~~~VtL~vq~~~~~Y~~i~~~~~gDSFYVRA~FDy~~~~~-------~~LsFkkGDILhViD 73 (311)
+++.+...+|+..+|.++.|+|||++..... . ..+-...||||+|||+|..| +||+|++||||+|+|
T Consensus 177 i~v~~~~~~e~q~~l~~~~G~itfkiiP~~~---~---~~~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~ 250 (542)
T KOG0609|consen 177 ISVANKSPEELQELLRNSRGSITFKIIPSYR---P---PPQQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVS 250 (542)
T ss_pred eecccCCHHHHHHHHHhCCCcEEEEEccccc---C---CCceeeeeehhhcCcCcccCCcccchhcCCcccccceeeecc
Confidence 4678899999999999999999999995533 1 12234699999999999764 799999999999999
Q ss_pred ccc----------------------------------c------------------------------------------
Q psy9828 74 LEN----------------------------------M------------------------------------------ 77 (311)
Q Consensus 74 T~~----------------------------------m------------------------------------------ 77 (311)
+.| +
T Consensus 251 qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYE 330 (542)
T KOG0609|consen 251 QDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYE 330 (542)
T ss_pred CCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhhhccccccHH
Confidence 954 0
Q ss_pred ------------------------------------------------------------------cccc--------cc
Q psy9828 78 ------------------------------------------------------------------MEES--------DS 83 (311)
Q Consensus 78 ------------------------------------------------------------------mE~~--------~~ 83 (311)
||.+ ..
T Consensus 331 EV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~G 410 (542)
T KOG0609|consen 331 EVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYG 410 (542)
T ss_pred HHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecC
Confidence 2222 12
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccCC----------c-----
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIP----------K----- 146 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~----------e----- 146 (311)
+|.+|+ |++++|+.|+++||+||||+.|++++.|++++|.||||||+||+++.++++|+... .
T Consensus 411 Ey~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~ 490 (542)
T KOG0609|consen 411 EYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQE 490 (542)
T ss_pred cchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHH
Confidence 667786 99999999999999999999999999999999999999999999999999887532 0
Q ss_pred ---------ccCCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHhcCCCCeeEeeec
Q psy9828 147 ---------LNSAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINFNGSSPSQAIKFS 198 (311)
Q Consensus 147 ---------~~~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~eQs~pvWV~~~~ 198 (311)
.+|+||||.+|+|+|++. +|++|+++|++++++|||||--|
T Consensus 491 i~~eS~~ie~~yghyfD~iIvN~dld~-----------t~~eL~~~iekl~tepqWVPvsW 540 (542)
T KOG0609|consen 491 IIDESARIEQQYGHYFDLIIVNSDLDK-----------TFRELKTAIEKLRTEPQWVPVSW 540 (542)
T ss_pred HHHHHHHHHHHhhhheeEEEEcCcHHH-----------HHHHHHHHHHHhccCCceeeeec
Confidence 138999999999999999 89999999999999999998655
No 3
>KOG0708|consensus
Probab=99.97 E-value=7.9e-31 Score=253.78 Aligned_cols=185 Identities=26% Similarity=0.432 Sum_probs=158.5
Q ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEEEeChhHHHH------------HHh----cc-CCCeeEEEeccccCCCCC-----
Q psy9828 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH------------VVA----SQ-RGDSFHIKTHFNYDQPEK----- 58 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~~~~~VtL~vq~~~~~Y~~------------i~~----~~-~gDSFYVRA~FDy~~~~~----- 58 (311)
+|+++.|+|+|+..|+..+++++|.+||++++|.+ ++. +. ...++|||++|||+...+
T Consensus 6 ~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~d~~~~~~~~~ 85 (359)
T KOG0708|consen 6 VDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHDLEVLHVMDSMYQSRQEWRCLYVDALFDYDLDRGSPGYS 85 (359)
T ss_pred cccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCCcchHHHHHhhhccCCCCceeEeeccccccccCCCCCcc
Confidence 47899999999999999999999999999999842 111 11 356999999999998653
Q ss_pred CCcceeeCCeeEeccccc-c------------------------------------------------------------
Q psy9828 59 GEMSFRKGDVFHVIELEN-M------------------------------------------------------------ 77 (311)
Q Consensus 59 ~~LsFkkGDILhViDT~~-m------------------------------------------------------------ 77 (311)
.+++|..|+|+|+++.++ +
T Consensus 86 ~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~f~~~~~~~~~~s~d~~~~~~~~~ 165 (359)
T KOG0708|consen 86 RAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDSFNSGRDFPFLLSKDGLDMSSDEN 165 (359)
T ss_pred hhhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccccccccccccccccccCCcccccCccccccccccc
Confidence 789999999999999733 0
Q ss_pred -------------------------------------------------------------cccc--------cccCCCC
Q psy9828 78 -------------------------------------------------------------MEES--------DSKKCSG 88 (311)
Q Consensus 78 -------------------------------------------------------------mE~~--------~~~~~~n 88 (311)
||++ ..++++|
T Consensus 166 ~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~~t~~~~~~eme~~~k~~~fI~~~q~~~~ 245 (359)
T KOG0708|consen 166 ELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLPETLRPSREEMERDSKEETFIDAGQRSNG 245 (359)
T ss_pred ccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhccccccchhhhcccHHHhhhhcccCceeeecccCCC
Confidence 2222 1255555
Q ss_pred c--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccCCcc--------------cCCCc
Q psy9828 89 I--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKL--------------NSAQF 152 (311)
Q Consensus 89 l--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~e~--------------~~~hl 152 (311)
+ |++++|++|+++||||||||+.+||++|+.++||||||||+|.|.+++|+++.+.+.+ +|..+
T Consensus 246 ~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~ 325 (359)
T KOG0708|consen 246 LYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQELDRY 325 (359)
T ss_pred cceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHHHhHhhhhhc
Confidence 4 9999999999999999999999999999999999999999999999999999776532 37999
Q ss_pred ceEEEecCCccchhhhhhccccHHHHHHHHHHHhcCCCCeeEee
Q psy9828 153 FSVVIFLRAETKSNVKELRAGIPNYIKTISLINFNGSSPSQAIK 196 (311)
Q Consensus 153 Fd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~eQs~pvWV~~ 196 (311)
|+++|..+++++ +|.++|.+|.+||.+.+|||+
T Consensus 326 ~t~vv~~~s~e~-----------i~~qvk~~I~~Eq~k~iWVp~ 358 (359)
T KOG0708|consen 326 FTLVVQGGSLEE-----------LLSQVKDIIEDEQKKVIWVPA 358 (359)
T ss_pred eEEEEecccHHH-----------HHHHHHHHHHHhhCCeEeeeC
Confidence 999999888887 999999999999999999975
No 4
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.53 E-value=1e-14 Score=127.32 Aligned_cols=93 Identities=25% Similarity=0.379 Sum_probs=79.7
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHH-HccCCcc-------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL-RAGIPKL------------- 147 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeL-R~~l~e~------------- 147 (311)
++.|+. |+.++|+.++++|||||||++++|+++|+...++|++|||+|||.+.|++. +.+..+.
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~ 152 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEK 152 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHH
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 455554 999999999999999999999999999999999999999999999999765 4443221
Q ss_pred cCCCc--ceEEEecCCccchhhhhhccccHHHHHHHHHHHhc
Q psy9828 148 NSAQF--FSVVIFLRAETKSNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 148 ~~~hl--Fd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
.+.++ ||.+|+|++++. +|.+|+++|+++
T Consensus 153 ~~~~~~~fd~vi~n~~le~-----------~~~~l~~ii~~~ 183 (183)
T PF00625_consen 153 EFEHYNEFDYVIVNDDLEE-----------AVKELKEIIEQE 183 (183)
T ss_dssp HHGGGGGSSEEEECSSHHH-----------HHHHHHHHHHHH
T ss_pred HHhHhhcCCEEEECcCHHH-----------HHHHHHHHHHhC
Confidence 14666 999999999998 999999999863
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.53 E-value=2.2e-14 Score=125.77 Aligned_cols=94 Identities=27% Similarity=0.454 Sum_probs=79.9
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHH-HHccCCcc-------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE-LRAGIPKL------------- 147 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKe-LR~~l~e~------------- 147 (311)
++.++. |++++|++++++|||||||++++++++|+...++|++|||.|||.+.|++ |+.+..+.
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~ 152 (184)
T smart00072 73 EYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQK 152 (184)
T ss_pred EEcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344543 99999999999999999999999999999999999999999999998865 44454422
Q ss_pred --cCCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHhcC
Q psy9828 148 --NSAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINFNG 188 (311)
Q Consensus 148 --~~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~eQ 188 (311)
...++||.+|+|+++++ +|++|+++|.+++
T Consensus 153 ~~~~~~~fd~~I~n~~l~~-----------~~~~l~~~i~~~~ 184 (184)
T smart00072 153 EAQEYHLFDYVIVNDDLED-----------AYEELKEILEAEQ 184 (184)
T ss_pred HHhhhccCCEEEECcCHHH-----------HHHHHHHHHHhcC
Confidence 13488999999999999 9999999998753
No 6
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.28 E-value=6.7e-12 Score=111.74 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=75.5
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCccc-EEEEEcCCCHHHHHH-HHccCCcc------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYP-IVIFLRAETKSNVKE-LRAGIPKL------------ 147 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~P-IVIFIkPpS~e~LKe-LR~~l~e~------------ 147 (311)
++.|+. |+.++|++++++||+||||++++|++.|+.....+ ++|||.|||.+.+++ ++++...+
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~ 153 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI 153 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556665 99999999999999999999999999998652222 899999999988754 55554321
Q ss_pred ---cCCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHh
Q psy9828 148 ---NSAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 148 ---~~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~ 186 (311)
.+.++||.+|+|++++. ++.+|+.+|..
T Consensus 154 ~e~~~~~~~D~vI~N~dle~-----------a~~ql~~ii~~ 184 (186)
T PRK14737 154 IELDEANEFDYKIINDDLED-----------AIADLEAIICG 184 (186)
T ss_pred HHHhhhccCCEEEECcCHHH-----------HHHHHHHHHhc
Confidence 26899999999999988 89999998864
No 7
>PLN02772 guanylate kinase
Probab=99.18 E-value=4.6e-11 Score=118.49 Aligned_cols=93 Identities=17% Similarity=0.318 Sum_probs=79.5
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHH-HHHccCCcc-------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKL------------- 147 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LK-eLR~~l~e~------------- 147 (311)
++.|+. |+.++|+.++++||+|||||+++|+++|+...+.+++|||.||+++.|+ +|+.+..+.
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~ 285 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEA 285 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455665 9999999999999999999999999999988889999999999999984 455554421
Q ss_pred -----cCCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHhc
Q psy9828 148 -----NSAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 148 -----~~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
.+.++||.+|+|++++. +|++|+++|.-.
T Consensus 286 Ei~~~~~~~~fD~vIvNDdLe~-----------A~~~L~~iL~~~ 319 (398)
T PLN02772 286 ELEQGKSSGIFDHILYNDNLEE-----------CYKNLKKLLGLD 319 (398)
T ss_pred HHhhccccCCCCEEEECCCHHH-----------HHHHHHHHHhhc
Confidence 13679999999999998 899999998754
No 8
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.1e-10 Score=105.57 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=80.5
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHH-HHHHccCCccc------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNV-KELRAGIPKLN------------ 148 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~L-KeLR~~l~e~~------------ 148 (311)
++.||+ |+...|++++.+|+.|||||+.||.++++..-=..+.|||.|||++.| +.|+.|.+++.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~ 152 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKK 152 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 566776 999999999999999999999999999986544777899999999999 45888877541
Q ss_pred ---CCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHhc
Q psy9828 149 ---SAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 149 ---~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
+...||.+|+|+|++. +|.+|+.+|..+
T Consensus 153 Ei~~~~~fdyvivNdd~e~-----------a~~~l~~ii~ae 183 (191)
T COG0194 153 EISHADEFDYVIVNDDLEK-----------ALEELKSIILAE 183 (191)
T ss_pred HHHHHHhCCEEEECccHHH-----------HHHHHHHHHHHH
Confidence 4567999999999999 899999999765
No 9
>KOG0707|consensus
Probab=98.93 E-value=1.1e-09 Score=101.79 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=81.6
Q ss_pred cCCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHH-HHHHccCCccc------------
Q psy9828 84 KKCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNV-KELRAGIPKLN------------ 148 (311)
Q Consensus 84 ~~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~L-KeLR~~l~e~~------------ 148 (311)
.+.||. |++++|++++..||.|+|||+.+++..++...+.+++||++||+.+.+ +.||+++++.+
T Consensus 108 ~~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~ 187 (231)
T KOG0707|consen 108 TFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEE 187 (231)
T ss_pred hhhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhh
Confidence 556665 999999999999999999999999999999999999999999999888 55888876541
Q ss_pred ------CCCcceEEEec-CCccchhhhhhccccHHHHHHHHHHHhcC
Q psy9828 149 ------SAQFFSVVIFL-RAETKSNVKELRAGIPNYIKTISLINFNG 188 (311)
Q Consensus 149 ------~~hlFd~vI~n-ddl~~~~~~~~~~~~~~y~~Lk~~I~~eQ 188 (311)
-+..||.+|+| +++++ +|++|+..+..+.
T Consensus 188 e~~~~~~~g~~d~~~~ns~~lee-----------~~kel~~~~~~~~ 223 (231)
T KOG0707|consen 188 EFEILENSGSFDLVIVNSDRLEE-----------AYKELEIFISSDD 223 (231)
T ss_pred hhccccCCccccceecCCCchhh-----------hhhhhhhhhhHHH
Confidence 26789999999 88888 8999998886543
No 10
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.61 E-value=1.3e-07 Score=81.38 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCCCc--cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHH-HHccCCcc--------------
Q psy9828 85 KCSGI--IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE-LRAGIPKL-------------- 147 (311)
Q Consensus 85 ~~~nl--TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKe-LR~~l~e~-------------- 147 (311)
+.+++ ++.++|++++++|++||||++..+++.++..-..|++||+.+++.+.+++ ++.+...+
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~ 151 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKE 151 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34444 88899999999999999999999999998887788999999999888754 66654321
Q ss_pred -cCCCcceEEEecCCccchhhhhhccccHHHHHHHHHHH
Q psy9828 148 -NSAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLIN 185 (311)
Q Consensus 148 -~~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~ 185 (311)
.+.+.||.+|.|+++++ ++++|+++|.
T Consensus 152 ~~~~~~~d~~i~n~~~~~-----------~~~~l~~~~~ 179 (180)
T TIGR03263 152 IAHADEFDYVIVNDDLEK-----------AVEELKSIIL 179 (180)
T ss_pred HhccccCcEEEECCCHHH-----------HHHHHHHHHh
Confidence 25788999999999888 8999999875
No 11
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.41 E-value=3e-07 Score=77.90 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=52.2
Q ss_pred cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccCCcccCCCcceEEEecCCccc
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKLNSAQFFSVVIFLRAETK 164 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~e~~~~hlFd~vI~nddl~~ 164 (311)
+..++|++++++|++||||++.+++++|+.....|++|||.|| |.+|+|++|+.
T Consensus 78 ~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~---------------------~~~~~~~~~~~ 131 (137)
T cd00071 78 TSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP---------------------DYVIVNDDLEK 131 (137)
T ss_pred CcHHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC---------------------CeEEeCCCHHH
Confidence 8999999999999999999999999999999999999999998 89999999988
No 12
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.20 E-value=4.9e-06 Score=74.77 Aligned_cols=129 Identities=13% Similarity=0.221 Sum_probs=85.9
Q ss_pred ee-EEEeccccCCCCCCCcceeeCCeeEeccc--cc-ccccc----cccCCCCc--cchHHHHHHHhcCCEEEEecCccc
Q psy9828 44 SF-HIKTHFNYDQPEKGEMSFRKGDVFHVIEL--EN-MMEES----DSKKCSGI--IRLSAIRDMMDRGRHGLLDITPNA 113 (311)
Q Consensus 44 SF-YVRA~FDy~~~~~~~LsFkkGDILhViDT--~~-mmE~~----~~~~~~nl--TSl~AVr~ViekGKhCILDV~pqa 113 (311)
.| |+..+-++.+.. ++. -|.-+|.++. +. |++.+ ..++.++. |+.++|++++++|++||||++.++
T Consensus 39 ~~~~~~~~ttr~~r~-~e~---~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g 114 (206)
T PRK14738 39 PFHFVVTATTRPKRP-GEI---DGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQG 114 (206)
T ss_pred cccccccccCCCCCC-CCC---CCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCHHHHHHHHHcCCcEEEEcCHHH
Confidence 44 666666665432 111 1444666655 32 23222 12445554 999999999999999999999999
Q ss_pred cccccccCcccEEEEEcCCCHHHHH-HHHccCCcc--c-------------CCCcceEEEecC--CccchhhhhhccccH
Q psy9828 114 VDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKL--N-------------SAQFFSVVIFLR--AETKSNVKELRAGIP 175 (311)
Q Consensus 114 VkrL~~a~l~PIVIFIkPpS~e~LK-eLR~~l~e~--~-------------~~hlFd~vI~nd--dl~~~~~~~~~~~~~ 175 (311)
++.|+......++||+.||+.+.|+ .|+.|..+. . ..+-|+.++++. +++.
T Consensus 115 ~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~----------- 183 (206)
T PRK14738 115 AASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDE----------- 183 (206)
T ss_pred HHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHH-----------
Confidence 9999865445588999999988764 466654422 1 133468787774 4555
Q ss_pred HHHHHHHHHHhc
Q psy9828 176 NYIKTISLINFN 187 (311)
Q Consensus 176 ~y~~Lk~~I~~e 187 (311)
++.+++++|...
T Consensus 184 v~~~i~~~l~~~ 195 (206)
T PRK14738 184 AVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHHHHH
Confidence 899999999764
No 13
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.14 E-value=6e-06 Score=72.61 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHH-HHccCCcc---------------cCCCcc
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE-LRAGIPKL---------------NSAQFF 153 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKe-LR~~l~e~---------------~~~hlF 153 (311)
+...+|+.++++|++||||++++++..|......+++||+.+++.+.+++ +..+...+ .+.+.|
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~ 162 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEY 162 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhC
Confidence 78899999999999999999999999998776688999999999877743 44443211 145679
Q ss_pred eEEEecCCccchhhhhhccccHHHHHHHHHHHhc
Q psy9828 154 SVVIFLRAETKSNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 154 d~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
|.+|+|++.+. ++.+|++++...
T Consensus 163 d~vi~n~~~e~-----------~~~~l~~il~~~ 185 (205)
T PRK00300 163 DYVIVNDDLDT-----------ALEELKAIIRAE 185 (205)
T ss_pred CEEEECCCHHH-----------HHHHHHHHHHHH
Confidence 99999988877 899999999875
No 14
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=97.29 E-value=0.00014 Score=52.50 Aligned_cols=29 Identities=38% Similarity=0.679 Sum_probs=25.2
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEec-cc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVI-EL 74 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhVi-DT 74 (311)
|+||++||.+..+.+|+|++||+++|+ +.
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~ 30 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEK 30 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEee
Confidence 789999999999999999999999998 54
No 15
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=96.95 E-value=0.00046 Score=48.49 Aligned_cols=27 Identities=33% Similarity=0.802 Sum_probs=24.8
Q ss_pred EeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 48 KTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 48 RA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
||+|||.+..+.+|+|++||+|+|++.
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~ 27 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEK 27 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEE
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEe
Confidence 799999999999999999999999986
No 16
>KOG2199|consensus
Probab=96.49 E-value=0.0012 Score=66.30 Aligned_cols=31 Identities=23% Similarity=0.629 Sum_probs=28.6
Q ss_pred eeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 44 SFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 44 SFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.--|||+||++.-.+.||+|++|||++|.|.
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~ 245 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDD 245 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEccc
Confidence 3468999999999999999999999999997
No 17
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=96.27 E-value=0.0039 Score=42.96 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=28.6
Q ss_pred eeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 44 SFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 44 SFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
..+++|++||.+..+.+|+|++||++.|++.
T Consensus 2 ~~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~ 32 (58)
T smart00326 2 GPQVRALYDYTAQDPDELSFKKGDIITVLEK 32 (58)
T ss_pred CcEEEEeeeeCCCCCCCCCCCCCCEEEEEEc
Confidence 4688999999999999999999999999875
No 18
>KOG3812|consensus
Probab=96.22 E-value=0.023 Score=56.52 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=54.5
Q ss_pred cCCEEEEecC-ccccccccccCcccEEEEEcCCCHHHHHHH-HccCCcc---------------c-CCCcceEEEecCCc
Q psy9828 101 RGRHGLLDIT-PNAVDRLNYAQFYPIVIFLRAETKSNVKEL-RAGIPKL---------------N-SAQFFSVVIFLRAE 162 (311)
Q Consensus 101 kGKhCILDV~-pqaVkrL~~a~l~PIVIFIkPpS~e~LKeL-R~~l~e~---------------~-~~hlFd~vI~nddl 162 (311)
+=.-++||.+ .+--.+|....|-||++||+..|.+.|..| |.+...- + -+..||.||.-+-+
T Consensus 261 sLqLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqL 340 (475)
T KOG3812|consen 261 SLQLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQL 340 (475)
T ss_pred hceEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccH
Confidence 3445566643 334456777889999999999999999654 4443210 0 16799999998888
Q ss_pred cchhhhhhccccHHHHHHHHHHHh
Q psy9828 163 TKSNVKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 163 ~~~~~~~~~~~~~~y~~Lk~~I~~ 186 (311)
++ +|+.|-+.++.
T Consensus 341 ed-----------Acehla~yLEa 353 (475)
T KOG3812|consen 341 ED-----------ACEHLAEYLEA 353 (475)
T ss_pred HH-----------HHHHHHHHHHH
Confidence 88 89999988875
No 19
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=96.13 E-value=0.0033 Score=44.91 Aligned_cols=26 Identities=38% Similarity=0.806 Sum_probs=22.3
Q ss_pred eccccCCCCCCCcceeeCCeeEeccc
Q psy9828 49 THFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 49 A~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
|++||.+..+.+|+|++||++.|+..
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~ 26 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEK 26 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEe
Confidence 68999999999999999999999865
No 20
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=95.85 E-value=0.0066 Score=41.42 Aligned_cols=29 Identities=34% Similarity=0.784 Sum_probs=26.7
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
+++|++||.+..+.+|+|++||++.|+..
T Consensus 1 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~ 29 (54)
T cd00174 1 YVRALYDYDARDPDELSFKKGDIIEVLEK 29 (54)
T ss_pred CEEEEEeeCCCCCCCCCCCCCCEEEEEEc
Confidence 46899999999999999999999999875
No 21
>KOG4792|consensus
Probab=95.40 E-value=0.0089 Score=56.56 Aligned_cols=32 Identities=13% Similarity=0.573 Sum_probs=30.2
Q ss_pred CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 43 DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 43 DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
...||||+||+.+..+..|.|++||||.|++-
T Consensus 123 ~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K 154 (293)
T KOG4792|consen 123 EAEYVRALFDFNGNDEEDLPFKKGEILRIRDK 154 (293)
T ss_pred hhhheeeeeccCCCccccCCcccCcEEEEecC
Confidence 46899999999999999999999999999987
No 22
>KOG2070|consensus
Probab=94.53 E-value=0.026 Score=58.32 Aligned_cols=36 Identities=28% Similarity=0.642 Sum_probs=33.4
Q ss_pred ccCCCeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 39 SQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 39 ~~~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.+.+..+-|||-|.+.+.+..+|||.||||++|+-.
T Consensus 12 ~~s~~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~ 47 (661)
T KOG2070|consen 12 DNSNNPLVVRAKFNFQGSNNDELSFSKGDVITVTQV 47 (661)
T ss_pred CCCCCceEEEEEeecccCCCceeccccCCEEEEEEe
Confidence 457788999999999999999999999999999877
No 23
>KOG1118|consensus
Probab=94.21 E-value=0.022 Score=55.87 Aligned_cols=33 Identities=18% Similarity=0.524 Sum_probs=31.2
Q ss_pred CCeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 42 GDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 42 gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
-|.-.+||+||++++++++|.|+.|||+.|+++
T Consensus 304 ~~~p~cralYdFepenEgEL~fkeGDlI~l~~Q 336 (366)
T KOG1118|consen 304 MDQPCCRALYDFEPENEGELDFKEGDLITLTNQ 336 (366)
T ss_pred ccchhheeeeccCCCCCCccCcccCceeeehhh
Confidence 467899999999999999999999999999998
No 24
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.70 E-value=0.8 Score=40.13 Aligned_cols=91 Identities=8% Similarity=0.042 Sum_probs=55.5
Q ss_pred cchHHHHHHHhcCCEEEEecCccccccccccC-cccEEEEEcCCCHHHH-HHHHccCCc--cc---------CCCcceEE
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQ-FYPIVIFLRAETKSNV-KELRAGIPK--LN---------SAQFFSVV 156 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~-l~PIVIFIkPpS~e~L-KeLR~~l~e--~~---------~~hlFd~v 156 (311)
|+. +++..+++|++||+|........++..- -.-++||+.+ |.+.+ +.|+.+-.. +. +-..+|.+
T Consensus 78 ~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~-s~e~l~~RL~~R~~~~~~~i~~rl~r~~~~~~ad~~ 155 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV-SPEILRQRLENRGRENASEINARLARAARYQPQDCH 155 (186)
T ss_pred CcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccCCEE
Confidence 787 5999999999999987765544554432 2344677776 45554 556444221 10 12246755
Q ss_pred EecCCccchhhhhhccccHHHHHHHHHHHhcCCCC
Q psy9828 157 IFLRAETKSNVKELRAGIPNYIKTISLINFNGSSP 191 (311)
Q Consensus 157 I~nddl~~~~~~~~~~~~~~y~~Lk~~I~~eQs~p 191 (311)
|++++.+. ++ ++.++.+++..-|.+-
T Consensus 156 vi~~~~s~---ee------~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 156 TLNNDGSL---RQ------SVDTLLTLLHLSQKEK 181 (186)
T ss_pred EEeCCCCH---HH------HHHHHHHHHhhcCccc
Confidence 55554221 22 8999999998777654
No 25
>KOG4225|consensus
Probab=91.53 E-value=0.094 Score=53.50 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=26.3
Q ss_pred EEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 47 IKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 47 VRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
=||+|||.++...+|.|++|||++|.-.
T Consensus 233 aralf~F~~qt~kEL~~~kGDIVyI~rk 260 (489)
T KOG4225|consen 233 ARALFDFEAQTPKELPFNKGDIVYILRK 260 (489)
T ss_pred hhheeccccCCccccccCCCCEEEEEee
Confidence 6899999999999999999999999766
No 26
>KOG2856|consensus
Probab=91.20 E-value=0.09 Score=52.79 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=28.6
Q ss_pred CCCeeEEEeccccCCCCCCCcceeeCCeeEecc
Q psy9828 41 RGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73 (311)
Q Consensus 41 ~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViD 73 (311)
.||-.-|||+|||.+....+|+|++||.|.+..
T Consensus 411 ~g~~v~vraLYDY~gqE~DElsfkaGd~l~kl~ 443 (472)
T KOG2856|consen 411 GGDFVRVRALYDYAGQEGDELSFKAGDELEKLE 443 (472)
T ss_pred CCceeeEEeeeccCcccccchhhccccHhhhcC
Confidence 356688999999999999999999999987743
No 27
>KOG1029|consensus
Probab=89.94 E-value=0.25 Score=53.71 Aligned_cols=43 Identities=28% Similarity=0.637 Sum_probs=33.7
Q ss_pred HHHHHHhccCC-------CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 32 EYEHVVASQRG-------DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 32 ~Y~~i~~~~~g-------DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.|=+++..++| --.-|=|+|||..+++.+|+|++|||+-|+|-
T Consensus 1034 ~yVKvL~~~s~raTPa~~~v~qviamYdY~AqndDELsF~kgdiI~Vlnk 1083 (1118)
T KOG1029|consen 1034 EYVKVLEPGSGRATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNK 1083 (1118)
T ss_pred HHhhhccCCCCcCCCCCCccceeEEeeccccCCcccccccCCCEEEecCC
Confidence 44566655422 23567799999999999999999999999986
No 28
>KOG4348|consensus
Probab=89.63 E-value=0.2 Score=51.38 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=29.7
Q ss_pred CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 43 DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 43 DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
..=|-|+.|-|+++++.+|.||.|||||.++-
T Consensus 260 tKeycrv~F~Ye~qndDELt~KEgdil~lItK 291 (627)
T KOG4348|consen 260 TKEYCRVKFVYEPQNDDELTLKEGDILILITK 291 (627)
T ss_pred hhhheeeeeeecCCCccceeeccccEEEEecc
Confidence 45699999999999999999999999999985
No 29
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.20 E-value=1.5 Score=37.71 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=53.2
Q ss_pred cchHHHHHHHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccCCcc------------cCC-CcceEE
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKL------------NSA-QFFSVV 156 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~e~------------~~~-hlFd~v 156 (311)
++. .+...+++|+.||+|.+......++...-.-++||+.++.-..++.++.+.... .|. ..++.+
T Consensus 79 ~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~~~~~ 157 (179)
T TIGR02322 79 IPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSARFAAAPADVT 157 (179)
T ss_pred ChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHhhcccccCCEE
Confidence 555 477888899999999997766666443223478999875544445666553211 122 345666
Q ss_pred Ee-cC-CccchhhhhhccccHHHHHHHHHHHh
Q psy9828 157 IF-LR-AETKSNVKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 157 I~-nd-dl~~~~~~~~~~~~~~y~~Lk~~I~~ 186 (311)
++ ++ +.++ ++.++.+++..
T Consensus 158 vi~~~~~~ee-----------~~~~i~~~l~~ 178 (179)
T TIGR02322 158 TIDNSGSLEV-----------AGETLLRLLRK 178 (179)
T ss_pred EEeCCCCHHH-----------HHHHHHHHHcc
Confidence 34 43 3444 78888888764
No 30
>KOG4225|consensus
Probab=85.54 E-value=0.56 Score=48.04 Aligned_cols=34 Identities=21% Similarity=0.585 Sum_probs=31.4
Q ss_pred CCCeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 41 RGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 41 ~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
++..|-+||+|.|.++++.+|-|+.|||++|+..
T Consensus 429 ~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeK 462 (489)
T KOG4225|consen 429 SSEPLKYRALYSYRPQNEDELELREGDIIDVMEK 462 (489)
T ss_pred CCCcccceeccccCCCCchhheeccCCEEeeeec
Confidence 5677889999999999999999999999999876
No 31
>KOG3875|consensus
Probab=84.32 E-value=0.2 Score=49.36 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=28.6
Q ss_pred CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 43 DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 43 DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
+..+-||+||+.+.++.||+||+||+|+|-.-
T Consensus 267 p~~~arA~YdF~a~np~ElSlk~Gdml~ia~K 298 (362)
T KOG3875|consen 267 PHEFARALYDFVARNPVELSLKKGDMLAIASK 298 (362)
T ss_pred hHHHHHHHhhhhcCCHHHhhhhcCchhhcccc
Confidence 33888999999999999999999999999653
No 32
>PRK08356 hypothetical protein; Provisional
Probab=84.06 E-value=2 Score=37.97 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=42.0
Q ss_pred cccccccccc----CcccEEEEEcCCCHHHHHHHHccCCc------c------------c-C-----CCcceEEEecC-C
Q psy9828 111 PNAVDRLNYA----QFYPIVIFLRAETKSNVKELRAGIPK------L------------N-S-----AQFFSVVIFLR-A 161 (311)
Q Consensus 111 pqaVkrL~~a----~l~PIVIFIkPpS~e~LKeLR~~l~e------~------------~-~-----~hlFd~vI~nd-d 161 (311)
.+|++.+... .....+|||.+|....++.|+.|..+ + . | ...+|.+|+|+ +
T Consensus 99 idG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~ 178 (195)
T PRK08356 99 IDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVIVNEGT 178 (195)
T ss_pred EcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEEECCCC
Confidence 3466555432 22357899999876555667655432 1 0 1 25789999884 5
Q ss_pred ccchhhhhhccccHHHHHHHHHHHhc
Q psy9828 162 ETKSNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 162 l~~~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
+++ ++.+|+.++.+.
T Consensus 179 ~e~-----------~~~~i~~~~~~~ 193 (195)
T PRK08356 179 LEE-----------LRKKVEEILREL 193 (195)
T ss_pred HHH-----------HHHHHHHHHHHh
Confidence 555 899999888763
No 33
>KOG4226|consensus
Probab=81.58 E-value=0.94 Score=44.29 Aligned_cols=29 Identities=17% Similarity=0.536 Sum_probs=26.5
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
-|-|++.++..++.+|+|.|||.|.|+|.
T Consensus 193 vVvaLYsFsssndeELsFeKGerleivd~ 221 (379)
T KOG4226|consen 193 VVVALYSFSSSNDEELSFEKGERLEIVDK 221 (379)
T ss_pred EEEEEecccCCChhhcccccCceeEeccC
Confidence 35679999999999999999999999998
No 34
>PRK04040 adenylate kinase; Provisional
Probab=81.21 E-value=4.8 Score=36.01 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=20.9
Q ss_pred CCcceEEEecCC--ccchhhhhhccccHHHHHHHHHH
Q psy9828 150 AQFFSVVIFLRA--ETKSNVKELRAGIPNYIKTISLI 184 (311)
Q Consensus 150 ~hlFd~vI~ndd--l~~~~~~~~~~~~~~y~~Lk~~I 184 (311)
.+.|+.+|+|++ ++. ++.+|+++|
T Consensus 162 ~g~~~~iI~N~d~~~e~-----------a~~~i~~ii 187 (188)
T PRK04040 162 TGATVKIVENREGLLEE-----------AAEEIVEVL 187 (188)
T ss_pred cCCeEEEEECCCCCHHH-----------HHHHHHHHh
Confidence 567999999999 777 899999887
No 35
>KOG3551|consensus
Probab=79.98 E-value=1.3 Score=45.07 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHhcCCCcEEEEEEeChhH
Q psy9828 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32 (311)
Q Consensus 2 dlr~~T~EEA~~~L~~~~~~VtL~vq~~~~~ 32 (311)
||+.+||+||++.|++.+..|.|-|+|..+.
T Consensus 142 dL~~AtHdeAVqaLKraGkeV~levKy~REv 172 (506)
T KOG3551|consen 142 DLRDATHDEAVQALKRAGKEVLLEVKYMREV 172 (506)
T ss_pred hhhhcchHHHHHHHHhhCceeeeeeeeehhc
Confidence 7899999999999999999999999998885
No 36
>KOG3601|consensus
Probab=79.00 E-value=0.96 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.525 Sum_probs=32.2
Q ss_pred CCeeEEEeccccCCCCCCCcceeeCCeeEeccccc
Q psy9828 42 GDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76 (311)
Q Consensus 42 gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT~~ 76 (311)
....|++|+||..+..+.+|.|++||+.+|+|.++
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss 195 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSS 195 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCC
Confidence 67889999999999999999999999999999844
No 37
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=78.61 E-value=2.3 Score=32.13 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHhcCCCcEEEEEE
Q psy9828 2 DMKGITREEAVLFLLSLQDQIHLIVQ 27 (311)
Q Consensus 2 dlr~~T~EEA~~~L~~~~~~VtL~vq 27 (311)
+++++|++|++..|+...++|+|++|
T Consensus 56 ~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 56 SVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp ESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 57899999999999999999999987
No 38
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=78.38 E-value=4.2 Score=38.35 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=54.2
Q ss_pred CEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccC--Ccc-------------cCCCcceEEEecC---Cccc
Q psy9828 103 RHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI--PKL-------------NSAQFFSVVIFLR---AETK 164 (311)
Q Consensus 103 KhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l--~e~-------------~~~hlFd~vI~nd---dl~~ 164 (311)
+.||+|+-.= .+.--...+.-.+|+|..|...+++.|..|- +++ ++....|.+|.|+ ++++
T Consensus 118 ~~vv~evPLL-~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~ 196 (244)
T PTZ00451 118 LIVVLDAPTL-FETKTFTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDE 196 (244)
T ss_pred CEEEEEechh-hccCchhhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHH
Confidence 4999998653 2321112356789999998888888877663 221 1356788899998 4555
Q ss_pred hhhhhhccccHHHHHHHHHHHh-cCCCCeeE
Q psy9828 165 SNVKELRAGIPNYIKTISLINF-NGSSPSQA 194 (311)
Q Consensus 165 ~~~~~~~~~~~~y~~Lk~~I~~-eQs~pvWV 194 (311)
++.++..++.. .+..|.|+
T Consensus 197 -----------L~~~v~~~~~~~~~~~~~~~ 216 (244)
T PTZ00451 197 -----------LRGSVCDCVAWMSRQSNKRL 216 (244)
T ss_pred -----------HHHHHHHHHHHHHhhCChHH
Confidence 89999988866 35667664
No 39
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=75.66 E-value=6.4 Score=38.75 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHhcCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHH
Q psy9828 98 MMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 140 (311)
Q Consensus 98 ViekGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeL 140 (311)
+-++|+.++||.+.+++...-... | .+||| +.+.|.++
T Consensus 155 ~~~~g~~vilD~Sg~~L~~~L~~~--P--~lIKP-N~~EL~~~ 192 (310)
T COG1105 155 LRQQGAKVILDTSGEALLAALEAK--P--WLIKP-NREELEAL 192 (310)
T ss_pred HHhcCCeEEEECChHHHHHHHccC--C--cEEec-CHHHHHHH
Confidence 334599999999999997665444 4 57888 66666554
No 40
>KOG2391|consensus
Probab=74.58 E-value=41 Score=33.88 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=53.1
Q ss_pred cccEEEEEcCCCHHHHHHHHccCCccc--CCCcceEEEecCCccchhhhhhccccHHHHHHHHHHHhcCCCCe-eEeeec
Q psy9828 122 FYPIVIFLRAETKSNVKELRAGIPKLN--SAQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLINFNGSSPS-QAIKFS 198 (311)
Q Consensus 122 l~PIVIFIkPpS~e~LKeLR~~l~e~~--~~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~~eQs~pv-WV~~~~ 198 (311)
.+|-++||+|.+.-.+|- ........ |..+ +++|... +-.+..-+.+.|...+..|. ...+.+
T Consensus 82 ~~pP~c~VnPT~~M~ik~-~~hVd~nG~V~LPY------Lh~W~~p-------ssdLv~Liq~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 82 YYPPICYVNPTSTMIIKV-HEHVDPNGKVYLPY------LHNWDPP-------SSDLVGLIQELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred CCCCeEEecCCchhhhHH-hhccCCCCeEechh------hccCCCc-------cchHHHHHHHHHHHhcCCCccccCCCC
Confidence 488899999999877764 11111111 2222 4556631 11144445555544444443 222221
Q ss_pred cCCCCCCCcccccCCCCCcccccCC-CCCCCCCCCCCCCCCCCCCccccCCCCC
Q psy9828 199 ANYDPSTKPLRSVSNAGDTLATSSP-SGGSKYPPPSGPGAPPDLPPRIDRTNKP 251 (311)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
+.|..-+ ..+..-+.+ +++. +-.|||+||+++|++--+|=-.|-++-|
T Consensus 148 --~~p~p~p--~~~~~~~p~-~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~ 196 (365)
T KOG2391|consen 148 --SPPPPYP--QTEYNTPPL-KPKGSAYKPPLPPPPPPGGASALPYMTDDNAEP 196 (365)
T ss_pred --CCCCCCC--cccCCCCCC-CCCCcCcCCCCCCCCCCCccccCcccCCCCCCc
Confidence 1111111 111111222 3333 6788899888888876444444444444
No 41
>KOG0708|consensus
Probab=73.67 E-value=1.1 Score=44.77 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=32.6
Q ss_pred cCCCeeEEEeccccCCCCCCCcceeeCCeeEeccc-cc
Q psy9828 40 QRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL-EN 76 (311)
Q Consensus 40 ~~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT-~~ 76 (311)
..|++|||||++--+.-...++..++++++|++|+ ++
T Consensus 22 ~sg~~~~i~~q~~~e~~~~~e~~i~~~~~~~~~~~~~~ 59 (359)
T KOG0708|consen 22 TSGDSVYIRAQYRPEEYDKFELKIHDLEVLHVMDSMYQ 59 (359)
T ss_pred cCCCceEEEEEechhhhchhhcccCCcchHHHHHhhhc
Confidence 47999999999887766679999999999999998 66
No 42
>KOG2675|consensus
Probab=72.02 E-value=9.4 Score=39.45 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhc-CCCCeeE
Q psy9828 175 PNYIKTISLINFN-GSSPSQA 194 (311)
Q Consensus 175 ~~y~~Lk~~I~~e-Qs~pvWV 194 (311)
+.|.+|++.|.+. -++++|-
T Consensus 194 ~l~~eL~~YVk~hhtTGl~W~ 214 (480)
T KOG2675|consen 194 ALFLELQAYVKEHHTTGLVWN 214 (480)
T ss_pred HHHHHHHHHHHHhccccceec
Confidence 3677788877543 5788885
No 43
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=71.62 E-value=17 Score=31.40 Aligned_cols=73 Identities=10% Similarity=-0.007 Sum_probs=44.1
Q ss_pred cchHHHHHHHhcCCEEEEecCccccccccc-----cCcccEEEEEcCCCHHHHHHHHccCCcc------c----C-CCcc
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNY-----AQFYPIVIFLRAETKSNVKELRAGIPKL------N----S-AQFF 153 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqaVkrL~~-----a~l~PIVIFIkPpS~e~LKeLR~~l~e~------~----~-~hlF 153 (311)
+....++..+++|+.||+|......+.++. ....-++||+.+|.....+.+++|.... + + ..-|
T Consensus 73 ~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 152 (175)
T cd00227 73 AWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPGQARKQARVVHAGVEY 152 (175)
T ss_pred HHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccchHHHHHHHHhcCCCcc
Confidence 677888999999999999976543333321 1223467888887643345555553211 0 2 3556
Q ss_pred eEEEecCCc
Q psy9828 154 SVVIFLRAE 162 (311)
Q Consensus 154 d~vI~nddl 162 (311)
|.+|..+..
T Consensus 153 dl~iDts~~ 161 (175)
T cd00227 153 DLEVDTTHK 161 (175)
T ss_pred eEEEECCCC
Confidence 777766543
No 44
>KOG3549|consensus
Probab=70.79 E-value=2.7 Score=42.45 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHhcCCCcEEEEEEeCh
Q psy9828 2 DMKGITREEAVLFLLSLQDQIHLIVQNRR 30 (311)
Q Consensus 2 dlr~~T~EEA~~~L~~~~~~VtL~vq~~~ 30 (311)
.+++++|||++.+|.+.++.|+|.|.|-.
T Consensus 112 ~v~~c~HeevV~iLRNAGdeVtlTV~~lr 140 (505)
T KOG3549|consen 112 YVTACPHEEVVNILRNAGDEVTLTVKHLR 140 (505)
T ss_pred EeecCChHHHHHHHHhcCCEEEEEeHhhh
Confidence 47899999999999999999999998543
No 45
>KOG0162|consensus
Probab=69.90 E-value=3 Score=45.60 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=25.5
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEecc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIE 73 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhViD 73 (311)
-.+|++||.++...||+|++|||+.++.
T Consensus 1053 ~~~A~Y~y~gq~~dEls~~~~diIei~~ 1080 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVDELSFKKGDIIEIMR 1080 (1106)
T ss_pred ceeeeccCCCCCcccccccCCCEEEEec
Confidence 4589999999999999999999999975
No 46
>KOG3632|consensus
Probab=68.49 E-value=2.7 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.684 Sum_probs=21.7
Q ss_pred eccccCCCC--------CCCcceeeCCeeEeccc
Q psy9828 49 THFNYDQPE--------KGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 49 A~FDy~~~~--------~~~LsFkkGDILhViDT 74 (311)
|+|||++-. +.||.|++|+||.|.--
T Consensus 1143 AlfDYDpl~MSpNpDAaEeELpFregqIikV~GD 1176 (1335)
T KOG3632|consen 1143 ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGD 1176 (1335)
T ss_pred eeeccCccccCCCCChhhhccccccCcEEEEecc
Confidence 799999842 37999999999999643
No 47
>KOG3550|consensus
Probab=64.45 E-value=8.8 Score=34.82 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHhcCCCcEEEEEEeChhHHHHH
Q psy9828 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 36 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~~~~~VtL~vq~~~~~Y~~i 36 (311)
|++++--+|-|+.+|+...+.|.|+|.|-|...+.|
T Consensus 146 vsvege~hekavellkaa~gsvklvvrytpkvleem 181 (207)
T KOG3550|consen 146 VSVEGEHHEKAVELLKAAVGSVKLVVRYTPKVLEEM 181 (207)
T ss_pred eeecchhhHHHHHHHHHhcCcEEEEEecChHHHHHH
Confidence 467788899999999999999999999999877776
No 48
>KOG1029|consensus
Probab=61.61 E-value=6.4 Score=43.36 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=29.6
Q ss_pred CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 43 DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 43 DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
|-+|-||+|.++..+..+|+|..|||+.|.-.
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~es 723 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFES 723 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehh
Confidence 68899999999999999999999999999754
No 49
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=60.26 E-value=24 Score=31.71 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=43.5
Q ss_pred hcC-CEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccCC--cc-------------cCCCcceEEEecC-Cc
Q psy9828 100 DRG-RHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIP--KL-------------NSAQFFSVVIFLR-AE 162 (311)
Q Consensus 100 ekG-KhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~--e~-------------~~~hlFd~vI~nd-dl 162 (311)
++| +++++|+-. +-.......+-.+|+|.+|....++.+.+|-. ++ .+...+|.+|.|+ ++
T Consensus 112 ~~~~~vvv~e~pL--L~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~ 189 (208)
T PRK14731 112 RRGKRILVKEAAI--LFESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYNNGTL 189 (208)
T ss_pred hcCCCEEEEEeee--eeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHHHhCCEEEECCCCH
Confidence 345 466665532 11112223456789998877767777755532 11 1234678888876 44
Q ss_pred cchhhhhhccccHHHHHHHHHHHh
Q psy9828 163 TKSNVKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 163 ~~~~~~~~~~~~~~y~~Lk~~I~~ 186 (311)
++ ++.+++.++++
T Consensus 190 e~-----------l~~~i~~~~~~ 202 (208)
T PRK14731 190 DE-----------LKAQTEQLYQV 202 (208)
T ss_pred HH-----------HHHHHHHHHHH
Confidence 55 78888877765
No 50
>KOG0515|consensus
Probab=59.63 E-value=6.2 Score=41.91 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.9
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
-|=|++||+++.+.||+|+.||-|-|+--
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr 713 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRR 713 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEec
Confidence 35599999999999999999999999765
No 51
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=57.10 E-value=37 Score=30.17 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=46.0
Q ss_pred CEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHcc--CCccc-------------CCCcceEEEecC-Cccchh
Q psy9828 103 RHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG--IPKLN-------------SAQFFSVVIFLR-AETKSN 166 (311)
Q Consensus 103 KhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~--l~e~~-------------~~hlFd~vI~nd-dl~~~~ 166 (311)
+.+|+|+..---. ....++-.||+|..|...+++.++.| ++++. +....|.+|.|+ ++++
T Consensus 107 ~~vv~e~pll~e~--~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~~e~-- 182 (194)
T PRK00081 107 PYVVLDIPLLFEN--GLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQMPREEKLARADDVIDNNGDLEE-- 182 (194)
T ss_pred CEEEEEehHhhcC--CchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCCHHH--
Confidence 7899998653221 22234568899998877777777655 33221 234567888876 4555
Q ss_pred hhhhccccHHHHHHHHHHHh
Q psy9828 167 VKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 167 ~~~~~~~~~~y~~Lk~~I~~ 186 (311)
++.+++.++.+
T Consensus 183 ---------l~~qv~~i~~~ 193 (194)
T PRK00081 183 ---------LRKQVERLLQE 193 (194)
T ss_pred ---------HHHHHHHHHHh
Confidence 88888887754
No 52
>KOG3771|consensus
Probab=56.16 E-value=7.8 Score=40.07 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=32.7
Q ss_pred CCCeeEEEeccccCCCCCCCcceeeCCeeEeccccc
Q psy9828 41 RGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76 (311)
Q Consensus 41 ~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT~~ 76 (311)
+|--+.|.++.||.....++|+|+.||++.|+-+.+
T Consensus 397 p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~ 432 (460)
T KOG3771|consen 397 PGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDN 432 (460)
T ss_pred CCCccceeccccccccccccccccCCCEEEEecCCC
Confidence 678899999999999999999999999999998633
No 53
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=52.58 E-value=35 Score=30.76 Aligned_cols=74 Identities=4% Similarity=-0.036 Sum_probs=49.4
Q ss_pred cCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccC--Ccc-------------cCCCcceEEEecCC-ccc
Q psy9828 101 RGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI--PKL-------------NSAQFFSVVIFLRA-ETK 164 (311)
Q Consensus 101 kGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l--~e~-------------~~~hlFd~vI~ndd-l~~ 164 (311)
+++++|+|+-.- .+ .....+.-.+|||..|...+++++..|- +++ .+....|.+|.|+. +++
T Consensus 102 ~~~~vi~e~pLL-~E-~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~ 179 (196)
T PRK14732 102 EGKLVIWEVPLL-FE-TDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQLPITEKLKRADYIVRNDGNREG 179 (196)
T ss_pred cCCcEEEEeeee-eE-cCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHH
Confidence 467899988442 22 2223567889999999988888876663 322 13456778888774 444
Q ss_pred hhhhhhccccHHHHHHHHHHHhc
Q psy9828 165 SNVKELRAGIPNYIKTISLINFN 187 (311)
Q Consensus 165 ~~~~~~~~~~~~y~~Lk~~I~~e 187 (311)
++.++..++++.
T Consensus 180 -----------l~~~v~~l~~~~ 191 (196)
T PRK14732 180 -----------LKEECKILYSTL 191 (196)
T ss_pred -----------HHHHHHHHHHHH
Confidence 788888776654
No 54
>KOG1843|consensus
Probab=48.12 E-value=13 Score=38.13 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=27.0
Q ss_pred EEEeccccCCCCCCCcceeeCCeeEeccccc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILhViDT~~ 76 (311)
-++|++++..+..+.|+|++|||+-+++..+
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~ 448 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSD 448 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCc
Confidence 4688999999999999999999999988644
No 55
>KOG4348|consensus
Probab=47.20 E-value=6.6 Score=40.77 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=24.8
Q ss_pred EeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 48 KTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 48 RA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.+.|.|.++++.+|.|+.|||+.|+.-
T Consensus 104 ~v~f~Y~pqndDELelkVGDiIeli~e 130 (627)
T KOG4348|consen 104 VVTFAYSPQNDDELELKVGDIIELISE 130 (627)
T ss_pred EEEEeecCCCCceeeeeeccHHHhhhH
Confidence 478999999999999999999998876
No 56
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=40.22 E-value=5.3 Score=34.53 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHhcCCCcEEEEEEeChhHHHHHHhcc---CCCeeEEE
Q psy9828 3 MKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ---RGDSFHIK 48 (311)
Q Consensus 3 lr~~T~EEA~~~L~~~~~~VtL~vq~~~~~Y~~i~~~~---~gDSFYVR 48 (311)
+.++|.+||..+|. .....+ ..-=...|+.|++.+ .|.|||+-
T Consensus 52 ~~~Mtl~EA~~ILn-v~~~~~--~eeI~k~y~~Lf~~Nd~~kGGSfYLQ 97 (127)
T PF03656_consen 52 SKGMTLDEARQILN-VKEELS--REEIQKRYKHLFKANDPSKGGSFYLQ 97 (127)
T ss_dssp -----HHHHHHHHT---G--S--HHHHHHHHHHHHHHT-CCCTS-HHHH
T ss_pred cCCCCHHHHHHHcC-CCCccC--HHHHHHHHHHHHhccCCCcCCCHHHH
Confidence 45899999999996 333111 111124688888765 58899974
No 57
>KOG0197|consensus
Probab=39.33 E-value=20 Score=37.24 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=27.9
Q ss_pred EEEeccccCCCCCCCcceeeCCe-eEeccccc
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDV-FHVIELEN 76 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDI-LhViDT~~ 76 (311)
.+=|+|||.+..+..|+|.+||+ +++.++.+
T Consensus 13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~ 44 (468)
T KOG0197|consen 13 IVVALYDYASRTPEDLSFRKGDVVLILLETTN 44 (468)
T ss_pred eEEEeccccCCCccccccccCceEEEeeccCC
Confidence 45689999999999999999999 99999955
No 58
>KOG1264|consensus
Probab=37.23 E-value=16 Score=40.77 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=27.9
Q ss_pred eEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 45 FHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 45 FYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.-+||+|||.+..+.||+|-+|-|++++.-
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~k 804 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSK 804 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeec
Confidence 568999999999999999999999999886
No 59
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=37.14 E-value=99 Score=27.75 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=46.3
Q ss_pred CEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHcc--CCccc-------------CCCcceEEEecC-Cccchh
Q psy9828 103 RHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG--IPKLN-------------SAQFFSVVIFLR-AETKSN 166 (311)
Q Consensus 103 KhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~--l~e~~-------------~~hlFd~vI~nd-dl~~~~ 166 (311)
+.|++|+..-.-..+ ..+.-.+|||..|...+++.+..+ ++++. +...-|.+|.|+ +++.
T Consensus 108 ~~vv~e~plL~e~g~--~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~-- 183 (200)
T PRK14734 108 KVAVYDMPLLVEKGL--DRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQ-- 183 (200)
T ss_pred CEEEEEeeceeEcCc--cccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHH--
Confidence 688888765433222 235688999999888888776554 33221 123445677766 3444
Q ss_pred hhhhccccHHHHHHHHHHHhcC
Q psy9828 167 VKELRAGIPNYIKTISLINFNG 188 (311)
Q Consensus 167 ~~~~~~~~~~y~~Lk~~I~~eQ 188 (311)
++.++..++.+..
T Consensus 184 ---------l~~~v~~~~~~~~ 196 (200)
T PRK14734 184 ---------LLAQVDGLIAEIL 196 (200)
T ss_pred ---------HHHHHHHHHHHHH
Confidence 7888888776643
No 60
>KOG2546|consensus
Probab=35.10 E-value=18 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=26.3
Q ss_pred EEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 47 IKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 47 VRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
|+|.+||.+..+.||+|..|-||+|+--
T Consensus 426 Vv~iydy~~~KddeLsf~E~ailyv~kk 453 (483)
T KOG2546|consen 426 VVAIYDYTADKDDELSFAEGAILYVLKK 453 (483)
T ss_pred HHhhcccccccccccccccccEEEEEEe
Confidence 6889999999999999999999999876
No 61
>KOG2222|consensus
Probab=34.91 E-value=15 Score=38.81 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=42.0
Q ss_pred CCcEEEEEEeChhHHH----HHHhccCCCeeEEEeccccCCCCCCCcceeeCCeeEeccccc
Q psy9828 19 QDQIHLIVQNRRDEYE----HVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76 (311)
Q Consensus 19 ~~~VtL~vq~~~~~Y~----~i~~~~~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT~~ 76 (311)
.+.|++.+-|.++... +.++......=--||+.|+.-+.+.+|.|++.||+-|+..-|
T Consensus 519 ~~~i~~qadys~esh~kd~~nfik~~r~~~krakal~df~r~dddelgfrkndiitiisekd 580 (848)
T KOG2222|consen 519 AGHICLQADYSPESHAKDHANFIKGARTGAKRAKALHDFAREDDDELGFRKNDIITIISEKD 580 (848)
T ss_pred ccceeeeccCCchhhhhhHHHHhhhhhhhhHHHHHHhhhhhccccccccccccEEEEeecCC
Confidence 4777787778887543 333332222233478999998899999999999999999844
No 62
>PRK06762 hypothetical protein; Provisional
Probab=34.45 E-value=2.7e+02 Score=23.37 Aligned_cols=71 Identities=8% Similarity=0.004 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCEEEEecCccc------cccccccCccc-EEEEEcCCCHHHHHHHHccCC-----ccc----C-----CC
Q psy9828 93 SAIRDMMDRGRHGLLDITPNA------VDRLNYAQFYP-IVIFLRAETKSNVKELRAGIP-----KLN----S-----AQ 151 (311)
Q Consensus 93 ~AVr~ViekGKhCILDV~pqa------VkrL~~a~l~P-IVIFIkPpS~e~LKeLR~~l~-----e~~----~-----~h 151 (311)
..++..++.|+.+|||-.... ++.|....-.| .+||+..|-...++...+|-. ++. | .+
T Consensus 59 ~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~ 138 (166)
T PRK06762 59 QLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLG 138 (166)
T ss_pred HHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcC
Confidence 344555778999999865322 34443322223 688999876666665544421 110 1 34
Q ss_pred cceEEEecCCcc
Q psy9828 152 FFSVVIFLRAET 163 (311)
Q Consensus 152 lFd~vI~nddl~ 163 (311)
.++.+|++++..
T Consensus 139 ~~~~~~~~~~~~ 150 (166)
T PRK06762 139 VIGETIFTDNLS 150 (166)
T ss_pred CCCeEEecCCCC
Confidence 578888877655
No 63
>KOG3557|consensus
Probab=34.45 E-value=13 Score=40.14 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=28.7
Q ss_pred eeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 44 SFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 44 SFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.-|+.+++|+.+.+..+|++++||+|.|.|-
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d 530 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD 530 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc
Confidence 4699999999999999999999999999885
No 64
>PHA02757 hypothetical protein; Provisional
Probab=34.12 E-value=35 Score=26.79 Aligned_cols=24 Identities=8% Similarity=0.432 Sum_probs=21.1
Q ss_pred cchHHHHHHHhcCCEEEEecCccc
Q psy9828 90 IRLSAIRDMMDRGRHGLLDITPNA 113 (311)
Q Consensus 90 TSl~AVr~ViekGKhCILDV~pqa 113 (311)
..-..+++++++.|.||+++++.+
T Consensus 33 v~Qe~~~eildkdK~CiiE~de~s 56 (75)
T PHA02757 33 VDQEKANEILDKDKACIIEIDEDS 56 (75)
T ss_pred ccHHHHHHHhcccceEEEEEcCCC
Confidence 466788999999999999999984
No 65
>KOG3442|consensus
Probab=32.32 E-value=21 Score=31.19 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHhcCCCcEEEEEEeChhHHHHHHhcc---CCCeeEEEe
Q psy9828 4 KGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQ---RGDSFHIKT 49 (311)
Q Consensus 4 r~~T~EEA~~~L~~~~~~VtL~vq~~~~~Y~~i~~~~---~gDSFYVRA 49 (311)
-++|.+||..+|.=.. .+-.+--...|+.|.+.+ .|.|||+-.
T Consensus 54 ~~iTlqEa~qILnV~~---~ln~eei~k~yehLFevNdkskGGSFYLQS 99 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKE---PLNREEIEKRYEHLFEVNDKSKGGSFYLQS 99 (132)
T ss_pred ccccHHHHhhHhCCCC---CCCHHHHHHHHHHHHhccCcccCcceeehH
Confidence 4689999999884332 111111124588887765 689999865
No 66
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=31.79 E-value=1.4e+02 Score=27.27 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHcc--CCcc-------------cCCCcceEEEecCCccchh
Q psy9828 102 GRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG--IPKL-------------NSAQFFSVVIFLRAETKSN 166 (311)
Q Consensus 102 GKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~--l~e~-------------~~~hlFd~vI~nddl~~~~ 166 (311)
.+.|++|+-.--=.......++-.+|+|..|...+++.+..| ++++ +...+-|.||.|+..+-
T Consensus 108 ~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g~~~-- 185 (204)
T PRK14733 108 TVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQISDKEREKIADFVIDNTELTD-- 185 (204)
T ss_pred CCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECcCCCH--
Confidence 468999984431111111235667899999888888887655 3332 13456677888776321
Q ss_pred hhhhccccHHHHHHHHHHHh
Q psy9828 167 VKELRAGIPNYIKTISLINF 186 (311)
Q Consensus 167 ~~~~~~~~~~y~~Lk~~I~~ 186 (311)
++ +-.++..+++.
T Consensus 186 -~~------l~~~~~~~~~~ 198 (204)
T PRK14733 186 -QE------LESKLITTINE 198 (204)
T ss_pred -HH------HHHHHHHHHHH
Confidence 11 77777777765
No 67
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=30.41 E-value=1e+02 Score=26.88 Aligned_cols=59 Identities=15% Similarity=0.013 Sum_probs=37.4
Q ss_pred cCCEEEEecCccccccccccCcccEEEEEcCCCHHHHHHHHccC--Cccc-------------CCCcceEEEecCC
Q psy9828 101 RGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGI--PKLN-------------SAQFFSVVIFLRA 161 (311)
Q Consensus 101 kGKhCILDV~pqaVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l--~e~~-------------~~hlFd~vI~ndd 161 (311)
+|+.+|+++..---. ....+.-.+|||..|....++.+..|- ++.+ .....|.+|.|+.
T Consensus 104 ~~~~vvi~~pll~e~--~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 104 KLAYVLLDVPLLFEN--KLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMDIEERLARADDVIDNSA 177 (188)
T ss_pred CCCEEEEEchHhhhC--CcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEEECCC
Confidence 467899887543222 223456788999998887777766553 3221 2345788888763
No 68
>KOG4226|consensus
Probab=26.78 E-value=52 Score=32.58 Aligned_cols=35 Identities=9% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCeeEEEeccccCCCCCCCcceeeCCeeEeccccc
Q psy9828 42 GDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76 (311)
Q Consensus 42 gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT~~ 76 (311)
.+.+||=|-|||..+.+++|.++|.|-|-..|-.+
T Consensus 2 ~e~~~vvak~dy~aq~~qeldikkner~~llddsk 36 (379)
T KOG4226|consen 2 TEEVIVVAKWDYTAQQDQELDIKKNERLWLLDDSK 36 (379)
T ss_pred CcEEEEEEEechhcccchhccccccceEEEEcCCc
Confidence 36789999999999999999999999999988755
No 69
>KOG4575|consensus
Probab=26.49 E-value=50 Score=36.02 Aligned_cols=32 Identities=13% Similarity=0.448 Sum_probs=28.1
Q ss_pred CeeEEEeccccCCCCCCCcceeeCCeeEeccc
Q psy9828 43 DSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 43 DSFYVRA~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
-.|-|||++-+.++.++.|.|..||++.++--
T Consensus 7 ~p~~vrA~y~w~ge~eGdl~f~egDlie~trI 38 (874)
T KOG4575|consen 7 LPCMVRALYAWPGEREGDLKFTEGDLIEQTRI 38 (874)
T ss_pred CCceEEeeccCCCCcccccceecccceeEEee
Confidence 45889999999999999999999998777654
No 70
>KOG3601|consensus
Probab=25.91 E-value=29 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.9
Q ss_pred ccccCCCCCCCcceeeCCeeEeccc
Q psy9828 50 HFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 50 ~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
.+|.......||+|.+||+|-+.|.
T Consensus 6 ~n~f~a~i~dELsFlkg~~lk~l~~ 30 (222)
T KOG3601|consen 6 KNDFLAGIRDELSFLKGDNLKILNM 30 (222)
T ss_pred hhhhhhcCcccceeecCCceEecch
Confidence 3455555678999999999999993
No 71
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=25.69 E-value=2.9e+02 Score=26.00 Aligned_cols=104 Identities=13% Similarity=0.243 Sum_probs=68.2
Q ss_pred hHHHHHHHhcCCEEEEecCcc--ccccccccCcccEEEEEcCCCHHHHHHHHccCCcc------cCCCcc-eEEEecCCc
Q psy9828 92 LSAIRDMMDRGRHGLLDITPN--AVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKL------NSAQFF-SVVIFLRAE 162 (311)
Q Consensus 92 l~AVr~ViekGKhCILDV~pq--aVkrL~~a~l~PIVIFIkPpS~e~LKeLR~~l~e~------~~~hlF-d~vI~nddl 162 (311)
+++..+.+..|+.++.|+.+= |+.+-+...+.+.+-+|.-|....+.+- ...+.+ .+.+.. +.+++-++-
T Consensus 59 i~ag~~AL~~g~~Iv~Dv~MV~aGI~~~~l~~~~~v~c~i~d~~~~e~a~~-~g~Trsaa~~~~~~~~~~~~~ivvIGNA 137 (210)
T COG2082 59 IEAGREALKAGCPIVVDVNMVAAGITRRRLPALNPVICYVDDPRVAELAKE-EGITRSAAGMRLAAERGEGGAIVVIGNA 137 (210)
T ss_pred HHHHHHHHHcCCcEEEccHHHHHhcccccccccCcEEEEecCcchHHHHHh-hCchHHHHHHHHHHHhcCCceEEEEeCC
Confidence 677888888999999999874 6666655666688889988765454321 122222 123333 467776766
Q ss_pred cchhhhhhccccHHHHHHHHHHHhcCCCCeeEee--eccCCCCCCCc
Q psy9828 163 TKSNVKELRAGIPNYIKTISLINFNGSSPSQAIK--FSANYDPSTKP 207 (311)
Q Consensus 163 ~~~~~~~~~~~~~~y~~Lk~~I~~eQs~pvWV~~--~~~~~~~~~~~ 207 (311)
.. +.-+|.+.|+++.-+|.-|.- +-|.-+++++.
T Consensus 138 PT-----------AL~~l~elie~~~~~palvIg~PVGFv~AaesKe 173 (210)
T COG2082 138 PT-----------ALFELLELIEEGGIKPALVIGVPVGFVGAAESKE 173 (210)
T ss_pred HH-----------HHHHHHHHHHccCCCCcEEEEcCCcccchHHHHH
Confidence 66 788899999987788877632 33444444444
No 72
>KOG1702|consensus
Probab=25.34 E-value=37 Score=32.27 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEeccccCCCCCCCcceeeCCeeE
Q psy9828 46 HIKTHFNYDQPEKGEMSFRKGDVFH 70 (311)
Q Consensus 46 YVRA~FDy~~~~~~~LsFkkGDILh 70 (311)
--||.|||.+..+.+.+|.-||-+-
T Consensus 209 tyra~ydysaqdedevsF~dgd~iv 233 (264)
T KOG1702|consen 209 TYRAFYDYSAQDEDEVSFVDGDYIV 233 (264)
T ss_pred cchhhccCcccCcceeEEecCCeEE
Confidence 3499999999999999999999643
No 73
>PRK05541 adenylylsulfate kinase; Provisional
Probab=22.80 E-value=2.3e+02 Score=24.13 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=33.9
Q ss_pred HHhcCCEEEEecCccc--cccccccCccc-EEEEEcCCCHHHHHHHHccC----Ccc-----------cCCCcceEEEec
Q psy9828 98 MMDRGRHGLLDITPNA--VDRLNYAQFYP-IVIFLRAETKSNVKELRAGI----PKL-----------NSAQFFSVVIFL 159 (311)
Q Consensus 98 ViekGKhCILDV~pqa--VkrL~~a~l~P-IVIFIkPpS~e~LKeLR~~l----~e~-----------~~~hlFd~vI~n 159 (311)
+..+|+++|.|-..-. +..+....+.+ ++||+..+-...++.++..+ .++ .|....|.+|.|
T Consensus 74 l~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~~ 153 (176)
T PRK05541 74 LADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVIDN 153 (176)
T ss_pred HHhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEeC
Confidence 4467899999843311 22233222333 46888876444444433211 011 144456889988
Q ss_pred CCc
Q psy9828 160 RAE 162 (311)
Q Consensus 160 ddl 162 (311)
++.
T Consensus 154 ~~~ 156 (176)
T PRK05541 154 SCR 156 (176)
T ss_pred CCC
Confidence 754
No 74
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=22.50 E-value=66 Score=22.22 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHhc
Q psy9828 4 KGITREEAVLFLLS 17 (311)
Q Consensus 4 r~~T~EEA~~~L~~ 17 (311)
-++|+|+|+.+|.+
T Consensus 21 l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 21 LGLTPEDAVEALIG 34 (35)
T ss_pred cCCCHHHHHHHHhc
Confidence 36899999999865
No 75
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.94 E-value=1.7e+02 Score=27.74 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=47.1
Q ss_pred CHHHHHHHHhcCC-CcEEEEEEeCh-hHHHHHHhccCCCeeEEEeccccCCCCCCCcceeeCCeeEecccc
Q psy9828 7 TREEAVLFLLSLQ-DQIHLIVQNRR-DEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELE 75 (311)
Q Consensus 7 T~EEA~~~L~~~~-~~VtL~vq~~~-~~Y~~i~~~~~gDSFYVRA~FDy~~~~~~~LsFkkGDILhViDT~ 75 (311)
+.|||+..|.+.+ +.|-|.+=.+. +.|.. ....+..+|+|.+=..+. .|.|..++|+-.--.|
T Consensus 117 ~~~eA~~~l~~~~~~~iflttGsk~L~~f~~--~~~~~~r~~~RvLp~~~~----~~g~~~~~iia~~GPf 181 (249)
T PF02571_consen 117 SYEEAAELLKELGGGRIFLTTGSKNLPPFVP--APLPGERLFARVLPTPES----ALGFPPKNIIAMQGPF 181 (249)
T ss_pred CHHHHHHHHhhcCCCCEEEeCchhhHHHHhh--cccCCCEEEEEECCCccc----cCCCChhhEEEEeCCC
Confidence 6899999998888 77777666444 55655 245789999999855443 8889999998765553
No 76
>KOG2996|consensus
Probab=21.73 E-value=55 Score=35.48 Aligned_cols=26 Identities=19% Similarity=0.546 Sum_probs=20.8
Q ss_pred eccccCCCCCCCcceeeCCeeEeccc
Q psy9828 49 THFNYDQPEKGEMSFRKGDVFHVIEL 74 (311)
Q Consensus 49 A~FDy~~~~~~~LsFkkGDILhViDT 74 (311)
|-+|+....-.||||+.|||+.+.|+
T Consensus 810 arYdf~ard~~eLSlk~GDvV~i~~k 835 (865)
T KOG2996|consen 810 ARYDFCARDMRELSLKEGDVVKIYDK 835 (865)
T ss_pred eccccCCCchhhcccccCCEEEEehh
Confidence 34555555668999999999999987
No 77
>PRK00131 aroK shikimate kinase; Reviewed
Probab=21.39 E-value=3.1e+02 Score=22.57 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCEEEEecCccccccccccC---cccEEEEEcCCCHHHHHHHHccCC----c--c--------------cC
Q psy9828 93 SAIRDMMDRGRHGLLDITPNAVDRLNYAQ---FYPIVIFLRAETKSNVKELRAGIP----K--L--------------NS 149 (311)
Q Consensus 93 ~AVr~ViekGKhCILDV~pqaVkrL~~a~---l~PIVIFIkPpS~e~LKeLR~~l~----e--~--------------~~ 149 (311)
..+++++... .||+......+-.-.... -..++||+..|....++.+..+.. + . .|
T Consensus 65 ~~~~~l~~~~-~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
T PRK00131 65 EVLAELLARH-NLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLY 143 (175)
T ss_pred HHHHHHHhcC-CCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH
Confidence 4455555432 356665543321111000 135788888865544455543321 1 0 03
Q ss_pred CCcceEEEecCCccchhhhhhccccHHHHHHHHHHH
Q psy9828 150 AQFFSVVIFLRAETKSNVKELRAGIPNYIKTISLIN 185 (311)
Q Consensus 150 ~hlFd~vI~nddl~~~~~~~~~~~~~~y~~Lk~~I~ 185 (311)
.+++|.+|..++++- ++ ....+.+.|.
T Consensus 144 ~~~~dl~idt~~~~~---~e------~~~~I~~~v~ 170 (175)
T PRK00131 144 EEVADITVETDGRSP---EE------VVNEILEKLE 170 (175)
T ss_pred HhhcCeEEeCCCCCH---HH------HHHHHHHHHH
Confidence 466888888776663 33 6666666665
No 78
>smart00463 SMR Small MutS-related domain.
Probab=21.30 E-value=56 Score=24.79 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhc
Q psy9828 1 MDMKGITREEAVLFLLS 17 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~ 17 (311)
+||.|+|.+||...|..
T Consensus 4 lDLHG~~~~eA~~~l~~ 20 (80)
T smart00463 4 LDLHGLTVEEALTALDK 20 (80)
T ss_pred EEcCCCCHHHHHHHHHH
Confidence 58999999999988744
No 79
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=20.44 E-value=48 Score=25.35 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=12.4
Q ss_pred CCCCCCCHHHHHHHHhc
Q psy9828 1 MDMKGITREEAVLFLLS 17 (311)
Q Consensus 1 vdlr~~T~EEA~~~L~~ 17 (311)
+||.++|.+||...|..
T Consensus 1 iDLHG~~~~eA~~~l~~ 17 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEE 17 (83)
T ss_dssp EE-TTS-HHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 58999999999987743
Done!