RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9828
(311 letters)
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 76.1 bits (186), Expect = 1e-15
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 30/214 (14%)
Query: 70 HVIELENMMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL 129
+ I + ++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL
Sbjct: 249 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFL 308
Query: 130 RAETKSNVKELRAGIPKLNSAQ-----------------FFSVVIFLRAETKSNVKELRA 172
++K VK +R + + F+ I L + L+
Sbjct: 309 NPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKE 368
Query: 173 GIPNYIKTISLINFNGSSPSQAIKF-------------SANYDPSTKPLRSVSNAGDTLA 219
I + ++ + + + + Y + R S+ DT
Sbjct: 369 AIQQQQNQLVWVSEGKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDYEDTDT 428
Query: 220 TSSPSGGSKYPPPSGPGAPPDLPPRIDRTNKPPR 253
+ I R+++P R
Sbjct: 429 EGGAYTDQELDETLNDEVGTPPESAITRSSEPVR 462
Score = 51.8 bits (123), Expect = 1e-07
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEK 58
+D I REEAVLFLL L + + Q ++D Y +V S GDSF+I+THF Y++
Sbjct: 53 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP 112
Query: 59 GEMSFRKGDVFHVIE 73
+SF KG+VF V++
Sbjct: 113 YGLSFNKGEVFRVVD 127
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 71.0 bits (173), Expect = 5e-14
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 70 HVIELENMMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL 129
+ I + ++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL
Sbjct: 257 YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFL 316
Query: 130 RAETKSNVKELRAGIPK 146
++K VK +R +
Sbjct: 317 NPDSKQGVKTMRMRLCP 333
Score = 55.2 bits (132), Expect = 8e-09
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHL--IVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEK 58
+D I REEAVLFLL L + + Q ++D Y +V S GDSF+I+THF Y++
Sbjct: 61 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP 120
Query: 59 GEMSFRKGDVFHVIE 73
+SF KG+VF V++
Sbjct: 121 YGLSFNKGEVFRVVD 135
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 71.1 bits (173), Expect = 7e-14
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 72 IELENMMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRA 131
I +E + ++R++ ++G+H +LD++ NAV RL A +PI IF+R
Sbjct: 590 IRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRP 649
Query: 132 ETKSNVKELRAGI 144
+ NV E+ I
Sbjct: 650 RSLENVLEINKRI 662
Score = 44.5 bits (104), Expect = 3e-05
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 48/176 (27%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV----------------------VA 38
+D++ + E+A + L + + +I Q + +EY +
Sbjct: 362 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLR 421
Query: 39 SQRGDSFHIKTHFNYDQPEK-----GEMSFRKGDVFHVIELEN-------MMEESDSKKC 86
S F+I+ F+YD+ + +SFR GDV HVI+ + +
Sbjct: 422 SNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDD 481
Query: 87 SGIIRLSAIRDMMDRGRHGLLDITPNA--------------VDRLNYAQFYPIVIF 128
G I + + R D ++ V ++ PI+I
Sbjct: 482 IGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIIL 537
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 61.3 bits (149), Expect = 5e-11
Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 90 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG 143
++++R++ ++G+H +LD++ NA+ RL AQ YP+ +F++ ++ +V E+
Sbjct: 177 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRR 230
Score = 41.3 bits (97), Expect = 2e-04
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 41 RGDSFHIKTHFNYD------QPEKGEMSFRKGDVFHVI 72
+ S +++ F+YD P +G + F+ GD+ HV
Sbjct: 2 QKRSLYVRALFDYDPNRDDGLPSRG-LPFKHGDILHVT 38
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 60.6 bits (146), Expect = 1e-10
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 22/134 (16%)
Query: 58 KGEMSFRKGDVFHVIELENMMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRL 117
+++ D F + E S + S II+L +R + ++ +H LLD+TP+A++RL
Sbjct: 159 MQKLTAEMPDQFEIAE-----TVSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERL 213
Query: 118 NYAQFYPIVIFLRAETKSNVKELRAGIPKLNS-----------------AQFFSVVIFLR 160
NY Q+YPIV+F E++ +K LR + + + F+ I L
Sbjct: 214 NYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLN 273
Query: 161 AETKSNVKELRAGI 174
+ + +EL+A I
Sbjct: 274 GTSDTWYQELKAII 287
Score = 56.0 bits (134), Expect = 4e-09
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 42 GDSFHIKTHFNYDQPEKGEMSFRKGDVFHVI 72
GDSF+I+THF + + F +GDVFHV+
Sbjct: 2 GDSFYIRTHFELEPSPPSGLGFTRGDVFHVL 32
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 59.0 bits (143), Expect = 3e-10
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 91 RLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 141
+ ++R++ ++G+H +LD++ NAV RL A +PI IF+R + NV E+
Sbjct: 183 SVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 45 FHIKTHFNYDQ------PEKGEMSFRKGDVFHVIELE-------NMMEESDSKKCSGIIR 91
F+I+ F+YD+ + +SFR GDV HVI+ + G I
Sbjct: 2 FYIRALFDYDKTKDCGFLSQA-LSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 46.3 bits (110), Expect = 7e-07
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 44
++++ T ++A L + D I ++ Q ++ S+ G S
Sbjct: 72 INLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPS 115
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 43.3 bits (102), Expect = 1e-05
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 1 MDMKGITREEAVLFLLSLQ--DQIHLIVQNRRDEYEHVVASQRG 42
+D I REEAVLFLL L +++ ++ Q ++D Y +V S G
Sbjct: 81 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVG 124
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 44
+D++ + E+A + L + + +I Q + +EY A+ R DS
Sbjct: 69 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 41.7 bits (97), Expect = 2e-04
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 60 EMSFRKGDVFHVIELENMMEESDSKKCSGII--RLSAIRDMMDRGRHGLLDI-TPNAVDR 116
++S K V + ++E S+++ + + I ++ + +LD T N +
Sbjct: 185 DISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQ 244
Query: 117 LNYAQFYPIVIFLRAETKSNVKELRAGIPKLNSAQF 152
L+ PIV++++ + ++ L K +
Sbjct: 245 LSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHL 280
Score = 39.8 bits (92), Expect = 8e-04
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 16 LSLQDQIH-LIVQNRRDEYEHVV-ASQRGDSFHIKTHFNYDQPEKGE-------MSFRKG 66
+SL++ + + R + A + +F ++T+ +Y + + +SF
Sbjct: 8 VSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAK 67
Query: 67 DVFHVIELEN 76
D HV E N
Sbjct: 68 DFLHVKEKFN 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 32/193 (16%), Positives = 53/193 (27%), Gaps = 72/193 (37%)
Query: 48 KTHFNYDQP--------------EKGEMSFRKGDVF--H-------------VIELENMM 78
T F QP KG F H V+ +E++
Sbjct: 1728 ATQFT--QPALTLMEKAAFEDLKSKG--LIPADATFAGHSLGEYAALASLADVMSIESL- 1782
Query: 79 EESDSKKCSGIIRLSAIR----------DMMDRGRHGLLDITPNAV-DRLNYAQFYPIVI 127
+ + R D + R +G++ I P V + +V
Sbjct: 1783 -----------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 128 FLRAETKSNVKELRAGIPKLNSA--QFFSVVIFLRAETKSNVKELRAGIPNYIKT--ISL 183
+ T V E I N Q V A + + + N+IK I +
Sbjct: 1832 RVGKRTGWLV-E----IVNYNVENQQ---YVA---AGDLRALDTV-TNVLNFIKLQKIDI 1879
Query: 184 INFNGSSPSQAIK 196
I S + ++
Sbjct: 1880 IELQKSLSLEEVE 1892
Score = 40.0 bits (93), Expect = 0.001
Identities = 37/245 (15%), Positives = 64/245 (26%), Gaps = 74/245 (30%)
Query: 35 HVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIEL--------ENMMEESDSKKC 86
+ASQ + F+ + + + EL +++E S +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADD------EPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 87 SGIIRLSAI---RDMMDRGR--HGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 141
++ L + G H L D I ++ A + +
Sbjct: 81 DQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 142 AGIPKL------NSAQFFSVVIF------------LRA--ET-KSNVKELRAGIPNYIKT 180
L +AQ + IF LR +T V +L IK
Sbjct: 140 KSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDL-------IKF 190
Query: 181 IS--LINFNGSSPSQAIKFSANYD-------PSTKPLRSVSNAGDTLATSSPSGGSKYPP 231
+ L ++ F+ + PS P D L + P
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP------DKDYLLSI---------P 235
Query: 232 PSGPG 236
S P
Sbjct: 236 ISCPL 240
Score = 37.3 bits (86), Expect = 0.006
Identities = 37/229 (16%), Positives = 61/229 (26%), Gaps = 82/229 (35%)
Query: 16 LSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELE 75
S+ D IV N ++G + NY M F + + E
Sbjct: 1659 FSILD----IVINNPVNLTIHFGGEKGK----RIRENYS-----AMIFETIVDGKL-KTE 1704
Query: 76 NMMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPN---AVDRLNYAQFYPIVIFLRAE 132
+ +E + R GLL T A+ + A F L+++
Sbjct: 1705 KIFKEINEH----------STSYTFRSEKGLLSATQFTQPALTLMEKAAFE----DLKSK 1750
Query: 133 TKSNVKELRAGIPKLNS----------AQFFSV-----VIFLRAETKSN-VKELRAGIPN 176
AG +S A S+ V+F R T V G N
Sbjct: 1751 GLIPADATFAG----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 177 Y----------------------IKTIS--------LINFNGSSPSQAI 195
Y ++ + ++N+N Q +
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN-VENQQYV 1854
Score = 37.0 bits (85), Expect = 0.008
Identities = 40/220 (18%), Positives = 60/220 (27%), Gaps = 68/220 (30%)
Query: 121 QFYPIVIFLRAETKSNVKELRAGIPKLNSAQFFSVVIFLRAETKSNVKELRAGIPNYIK- 179
+ YP L + E G+P S S+ + + + V + + +P +
Sbjct: 312 EAYP-NTSLPPSILEDSLENNEGVP---SPML-SISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 180 TISLIN----FNGSSP---------------------------SQ-AIKFSANYDPSTKP 207
ISL+N S P S+ +KFS + P P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 208 LRS--VSNAGDTLATSSPSGGSKYPPPSGPGAP--------------PDLPPRIDR--TN 249
S + A D + + P + RI
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 250 KP---PRTNPPRSATERL-FGRERESSVS------KDGGG 279
P T AT L FG S + KDG G
Sbjct: 486 LPVKWETTTQF-KATHILDFGPGGASGLGVLTHRNKDGTG 524
Score = 30.4 bits (68), Expect = 1.0
Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 56/185 (30%)
Query: 108 DITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKLNSAQF---F-------SVVI 157
D P L +F + ++ + + + + L +F + ++
Sbjct: 51 DDEPTTPAEL-VGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 158 FLRAETKSNVKELRAGIPNYIKTISLINFNGSSPSQAIKFSA----------------N- 200
L E + + + + I NYI + S + F A N
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 201 -------------YDPSTKPLRSVSNAGDTL---ATSSPSGGSKYPPP-------SGPGA 237
Y L + + +TL ++ + P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 238 PPDLP 242
PD
Sbjct: 225 TPDKD 229
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 35.7 bits (83), Expect = 0.001
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FN++ + EMSFRKG+ ++
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLR 35
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 37.8 bits (89), Expect = 0.002
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 92 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL-------RAETKSNVKELR--A 142
L IR + ++G +LD+ P A+ L A+F P V+F+ +++ L+ +
Sbjct: 86 LETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKES 145
Query: 143 GIPKLNSAQFFSVVI 157
I + A +F + I
Sbjct: 146 DILQRTYAHYFDLTI 160
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 35.8 bits (83), Expect = 0.002
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ ++SF KG+ F ++E
Sbjct: 13 YDYNATRWTDLSFHKGEKFQILE 35
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F++D E GE+ FR+GD HV++
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 35.4 bits (82), Expect = 0.002
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ + ++SF KG+ F ++
Sbjct: 22 YDYEAITEDDLSFHKGEKFQILN 44
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 35.0 bits (81), Expect = 0.002
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+Y+ G++ F KG+ ++E
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILEQSG 38
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FN++ + EMSFRKG+ ++
Sbjct: 14 FNFNGDTQVEMSFRKGERITLLR 36
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 34.9 bits (81), Expect = 0.002
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ YD + E+SF D+ +I+
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIK 34
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEE 80
++Y+ E+SF +G + ++ EN ++
Sbjct: 15 YDYEGQTDDELSFPEGAIIRILNKENQDDD 44
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 34.9 bits (81), Expect = 0.002
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ YD ++SF+KG+ V+E
Sbjct: 14 YPYDGIHPDDLSFKKGEKMKVLE 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 35/173 (20%)
Query: 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIELENMMEESDSKKCS----GIIRLSAIRDMMDR 101
H H ++ E GE ++ D+ V E + ++ D K I+ I ++
Sbjct: 2 HHHHHMDF---ETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHII-- 55
Query: 102 GRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKLNSAQFFSVVIFLRA 161
++ +AV + L ++ + V++ + ++N FL +
Sbjct: 56 -------MSKDAVSGT-----LRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMS 96
Query: 162 ETKSNVKELRAGIPNYIKTISLINFNGSSPSQAIKFSANYDPSTKPLRSVSNA 214
K+ ++ YI+ + +N + F+ +P + A
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRL-YNDNQV-----FAKYNVSRLQPYLKLRQA 143
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 35.4 bits (82), Expect = 0.003
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ +P+ GE++FRKGDV ++E
Sbjct: 24 CEHTRPKPGELAFRKGDVVTILE 46
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 35.1 bits (81), Expect = 0.003
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+++ E+SFR GDVFHV E
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEE 42
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 34.9 bits (81), Expect = 0.003
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+ Y E G+++F +G+ V + +
Sbjct: 15 YPYSSVEPGDLTFTEGEEILVTQKDG 40
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 37.1 bits (85), Expect = 0.003
Identities = 5/57 (8%), Positives = 20/57 (35%)
Query: 17 SLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ E + A ++ + F + + ++ F +G+ ++
Sbjct: 91 DIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILS 147
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 34.5 bits (80), Expect = 0.003
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+N+ + ++ F KGDV ++
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVA 40
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 34.6 bits (80), Expect = 0.003
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 45 FHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76
F + F Y + +++F K V +E+
Sbjct: 8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVED 39
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 35.8 bits (82), Expect = 0.004
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEESDSKKCSGIIRLSAIRDMMDRGRHGLL 107
+Y + E+ + GDV VI +N EE D G+ + G+
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPFQN-PEEQDEGWLMGVKESDWNQHKELEKCRGVF 106
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 35.4 bits (82), Expect = 0.004
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVA 38
+D++ + E+A + L + + +I Q + +EY A
Sbjct: 66 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 36.8 bits (86), Expect = 0.004
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 92 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL 129
+ + + + +LDI P + + A+ P ++F+
Sbjct: 100 FETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFI 137
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 34.0 bits (79), Expect = 0.004
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ E+ F +GD+ ++ +
Sbjct: 10 YTFEPRTPDELYFEEGDIIYITD 32
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 34.1 bits (79), Expect = 0.004
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E ++ +G + ++E
Sbjct: 9 YDFQATEAHDLRLERGQEYIILE 31
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 34.0 bits (79), Expect = 0.004
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F++ K E++F+ GDV ++
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLS 33
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 35.1 bits (81), Expect = 0.004
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
++Y ++SF+KGD V+E
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLEESG 35
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 34.7 bits (80), Expect = 0.004
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
F+Y ++SFR GD V++ +
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSH 39
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 34.6 bits (80), Expect = 0.004
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
++Y+ + ++SF KG+ F ++
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILNSSE 37
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F Y + E++FR+G++ H+I
Sbjct: 13 FPYTGTNEDELTFREGEIIHLIS 35
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 34.1 bits (79), Expect = 0.005
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ E+ F +GD+ ++ +
Sbjct: 14 YTFEPRTPDELYFEEGDIIYITD 36
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 34.2 bits (79), Expect = 0.005
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F Y E+SFR+GDV + E
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHE 39
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 33.7 bits (78), Expect = 0.005
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E E++F+ G++ V++
Sbjct: 12 YDFEAVEDNELTFKHGELITVLD 34
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 33.7 bits (78), Expect = 0.006
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+++ ++ ++ F+KGD+ + +
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRD 30
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 34.2 bits (79), Expect = 0.006
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y E++F +G + H +
Sbjct: 14 YDYKAKRSDELTFCRGALIHNVS 36
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 34.2 bits (79), Expect = 0.006
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEE 80
++ E++F +GD+ ++E E
Sbjct: 14 YDNCPDCSDELAFSRGDILTILEQHVPESE 43
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+++ E GE++F++GDV +I
Sbjct: 9 FDFNPQESGELAFKRGDVITLIN 31
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 33.7 bits (78), Expect = 0.006
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++YD E++F++GD V +
Sbjct: 10 YDYDAQTGDELTFKEGDTIIVHQ 32
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 34.7 bits (80), Expect = 0.006
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELE---NMMEESDSKKCSGII 90
++Y+ ++SF+KG+ F +I S + SG I
Sbjct: 34 YDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYI 76
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E G++ FRKGDV +++
Sbjct: 10 YSFAGEESGDLPFRKGDVITILK 32
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 33.7 bits (78), Expect = 0.007
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y E+SF+KG +
Sbjct: 13 FDYVGRSARELSFKKGASLLLYH 35
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 33.7 bits (78), Expect = 0.007
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y E++ G++ I
Sbjct: 8 FDYQAQHDDELTISVGEIITNIR 30
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 33.8 bits (78), Expect = 0.007
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y ++ RKGD + ++E
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILE 37
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 33.4 bits (77), Expect = 0.007
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FN+ Q + E+SF KGDV HV
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTR 33
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 33.7 bits (78), Expect = 0.007
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F++ E+ +KGD+ ++ +
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYK 36
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 33.8 bits (78), Expect = 0.007
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+Y ++ ++SF +G+ ++
Sbjct: 14 ADYAATDETQLSFLRGEKILILR 36
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 33.8 bits (78), Expect = 0.007
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ Y + E+ R+GD V++
Sbjct: 14 YQYRPQNEDELELREGDRVDVMQ 36
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 33.5 bits (77), Expect = 0.007
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ +KGD+ ++
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLN 50
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 33.3 bits (77), Expect = 0.008
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E+ E+ FR G+V V++
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLD 30
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 33.8 bits (78), Expect = 0.008
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ +GE+ F++GD+ +
Sbjct: 14 YDFEPENEGELGFKEGDIITLTN 36
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 33.7 bits (78), Expect = 0.008
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ +GE+ F++GD+ +
Sbjct: 10 YDFEPENQGELGFKEGDIITLTN 32
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 34.0 bits (78), Expect = 0.008
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ ++SF+KGD V+E
Sbjct: 32 YDYEAIHHEDLSFQKGDQMVVLE 54
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 33.7 bits (78), Expect = 0.008
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
Y E+ +KG+ V+
Sbjct: 14 HTYSAHRPEELDLQKGEGIRVLG 36
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 33.3 bits (77), Expect = 0.008
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ +D + G++ + GD ++E
Sbjct: 9 YQFDPQQDGDLGLKPGDKVQLLE 31
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 33.4 bits (77), Expect = 0.008
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEE 80
++ E+SFRKGD+ V+E + +
Sbjct: 10 YDNVAESPDELSFRKGDIMTVLEQDTQGLD 39
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 33.4 bits (77), Expect = 0.008
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F Y + E+ + GD+ + E
Sbjct: 8 FEYIPQNEDELELKVGDIIDINE 30
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.4 bits (77), Expect = 0.008
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
NY + E E+S + G+V VIE
Sbjct: 15 SNYKKQENSELSLQAGEVVDVIE 37
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 33.4 bits (77), Expect = 0.009
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ +KGD+ ++
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLN 34
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 33.5 bits (77), Expect = 0.009
Identities = 3/32 (9%), Positives = 13/32 (40%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEESD 82
+ + E+S ++E +++ ++
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGNTE 51
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 33.5 bits (77), Expect = 0.009
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELE 75
++ D + E+SF + ++ V ++E
Sbjct: 14 YDADDDDAYEISFEQNEILQVSDIE 38
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 33.4 bits (77), Expect = 0.010
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ + E ++ R GD+ ++E
Sbjct: 14 YKFVPQENEDLEMRPGDIITLLE 36
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 33.0 bits (76), Expect = 0.010
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ +KGD+ ++
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLN 35
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 34.3 bits (79), Expect = 0.010
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 39
++++ T E+A L + ++ Q R +EY +S
Sbjct: 70 VNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESS 108
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 33.5 bits (77), Expect = 0.010
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y E++ +GD+ V
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFF 35
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 33.5 bits (77), Expect = 0.010
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
++Y + E++ +KGD+ ++ N
Sbjct: 9 YDYQEKSPREVTMKKGDILTLLNSTN 34
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 32.9 bits (76), Expect = 0.010
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+++ +S KG+ V+ +
Sbjct: 12 YDFVASGDNTLSITKGEKLRVLGYNH 37
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 33.6 bits (77), Expect = 0.011
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
Y + + E+SF G V+E
Sbjct: 15 SAYQKVQDSEISFPAGVEVQVLE 37
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 33.0 bits (76), Expect = 0.011
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y + E++F K + +E
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVE 32
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 33.0 bits (76), Expect = 0.011
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y + E++F K + +E
Sbjct: 13 FDYKAQREDELTFIKSAIIQNVE 35
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 33.0 bits (76), Expect = 0.012
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y E+ GD+ VI
Sbjct: 15 YDYTAQNPDELDLSAGDILEVIL 37
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 33.0 bits (76), Expect = 0.012
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F Y + E+ + GD+ + E
Sbjct: 14 FEYIPQNEDELELKVGDIIDINE 36
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 33.1 bits (76), Expect = 0.013
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y E+SF+KG + +
Sbjct: 16 FDYVGRTARELSFKKGASLLLYQ 38
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 33.1 bits (76), Expect = 0.013
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
Y K E+ F KG VI
Sbjct: 15 QPYTSQSKDEIGFEKGVTVEVIR 37
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 33.0 bits (76), Expect = 0.013
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
NY G++ F KGDV +
Sbjct: 14 CNYRGKNPGDLKFNKGDVILLRR 36
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 33.0 bits (76), Expect = 0.013
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FN+ Q + E+SF KGDV HV
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTR 35
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 32.7 bits (75), Expect = 0.014
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ +KGD+ ++
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLN 30
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 33.0 bits (76), Expect = 0.014
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++ + G+++F+KG++ VIE
Sbjct: 17 GDFTAQQVGDLTFKKGEILLVIE 39
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 32.6 bits (75), Expect = 0.014
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+++ ++ ++ F+KGD+ + +
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRD 32
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 32.5 bits (75), Expect = 0.015
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++YD E++ R G++ ++
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVK 30
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (76), Expect = 0.015
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+N+ + E+S R+GDV +
Sbjct: 14 YNFAARDMRELSLREGDVVRIYS 36
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 32.6 bits (75), Expect = 0.015
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y+ + ++ F++GD+ V+
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLS 34
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 33.2 bits (76), Expect = 0.016
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN--MMEESDSKKCSGII 90
+Y P+ FR+G+ VI E S S I
Sbjct: 24 SDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYI 65
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 32.6 bits (75), Expect = 0.017
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
F Y+ E++ ++GD+ +I +
Sbjct: 14 FPYEAQNDDELTIKEGDIVTLINKDC 39
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 32.7 bits (75), Expect = 0.018
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E+SF++GD+ V+
Sbjct: 16 YDFKATADDELSFKRGDILKVLN 38
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 32.7 bits (75), Expect = 0.019
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E E++F+ G++ V++
Sbjct: 24 YDFEAAEDNELTFKAGEIITVLD 46
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 33.2 bits (76), Expect = 0.020
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ + + E+SFRKG+ +I
Sbjct: 24 YTFKGDLEVELSFRKGEHICLIR 46
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 32.7 bits (75), Expect = 0.020
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F++ K E++F+ GDV ++
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLS 47
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.7 bits (75), Expect = 0.020
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ + G+++F+ GD VI
Sbjct: 24 YSFEGQQPGDLNFQAGDRITVIS 46
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 32.2 bits (74), Expect = 0.021
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y E+ + GD+ V+
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVG 36
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 32.2 bits (74), Expect = 0.021
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F++ E++ +KGD+ ++ +
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHK 30
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 32.7 bits (75), Expect = 0.021
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ R+ + + +++
Sbjct: 26 YDYQTNDPQELALRRNEEYCLLD 48
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 32.6 bits (75), Expect = 0.022
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ GE+ FR+GD+ +
Sbjct: 20 YDFEPENDGELGFREGDLITLTN 42
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 31.8 bits (73), Expect = 0.023
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIE 73
YD E+ +KGDV ++
Sbjct: 7 YDFPGSGSPSELPLKKGDVIYITR 30
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 31.8 bits (73), Expect = 0.024
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++YD E E++F + D IE
Sbjct: 7 YDYDAAEDNELTFVENDKIINIE 29
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 32.3 bits (74), Expect = 0.026
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ + + E++F KG+ VIE
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIE 35
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 33.9 bits (77), Expect = 0.026
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ ++ E+S ++GD+ ++
Sbjct: 12 YDFCARDRSELSLKEGDIIKILN 34
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 32.2 bits (74), Expect = 0.026
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y E+SF D+ IE
Sbjct: 16 YDYQAAGDDEISFDPDDIITNIE 38
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 32.4 bits (74), Expect = 0.026
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
++Y + E++ +KGD+ ++ N
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTN 49
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 32.2 bits (74), Expect = 0.028
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ +G +S +G+ ++E
Sbjct: 14 YHFEGSSEGTISMAEGEDLSLME 36
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 31.9 bits (73), Expect = 0.028
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 51 FNYD-QPEKGEMSFRKGDVFHVIE 73
+++ E+ +KGD+ +
Sbjct: 9 YDFPGSGSSSELPLKKGDIVFISR 32
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 31.7 bits (73), Expect = 0.028
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ + E++ + GD ++++
Sbjct: 9 YDFMAESQDELTIKSGDKVYILD 31
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 32.3 bits (74), Expect = 0.028
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ + E+ FRK D+ +I
Sbjct: 14 LDFERHDDDELGFRKNDIITIIS 36
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 32.4 bits (74), Expect = 0.029
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E E++F+ G++ V++
Sbjct: 24 YDFEAVEDNELTFKHGEIIIVLD 46
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 32.3 bits (74), Expect = 0.029
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++ + ++F K D+ V+E
Sbjct: 17 CSWTAKKDNHLNFSKHDIITVLE 39
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 32.0 bits (73), Expect = 0.029
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 53 YD-QPEKGEMSFRKGDVFHVIE 73
D + ++ F++G V+E
Sbjct: 17 ADYEGDEETAGFQEGVSMEVLE 38
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (73), Expect = 0.030
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
F Y+ E++ ++GD+ +I +
Sbjct: 16 FPYEAQNDDELTIKEGDIVTLINKDC 41
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 31.8 bits (73), Expect = 0.030
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++YD E+ E+SF+ GD +
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLG 32
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 32.4 bits (74), Expect = 0.031
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+++ E++F+ GDV V++ N
Sbjct: 17 WDHVTMANRELAFKAGDVIKVLDASN 42
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 34.3 bits (78), Expect = 0.031
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E+SF++GD+ V+
Sbjct: 7 YDFKATADDELSFKRGDILKVLN 29
Score = 28.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 45 FHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
+++ F++D E GE+ FR+GD HV++
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMD 187
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 31.3 bits (72), Expect = 0.033
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+ Y+ E+S GD+ VI ++
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDD 32
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 31.9 bits (73), Expect = 0.034
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
F Y+ E++ ++GD+ +I +
Sbjct: 9 FPYEAQNDDELTIKEGDIVTLINKDC 34
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 31.9 bits (73), Expect = 0.035
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + ++ E+SF++G + +VI+
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIK 46
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 34.2 bits (77), Expect = 0.037
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 23 HLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
LI R V ++ ++ +++ F+++ ++ ++ F+KGD+ + +
Sbjct: 113 TLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRD 163
Score = 28.8 bits (63), Expect = 2.2
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 50 HFNYDQPEKGEMSFRKGDVFHVIELEN 76
+ +K ++ G++ V ++
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINV 271
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 34.4 bits (78), Expect = 0.037
Identities = 5/57 (8%), Positives = 20/57 (35%)
Query: 17 SLQDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ E + A ++ + F + + ++ F +G+ ++
Sbjct: 120 DIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILS 176
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 32.0 bits (73), Expect = 0.041
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FNY + E+S KG V+E
Sbjct: 24 FNYMAEREDELSLIKGTKVIVME 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.041
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 164 KSNVKELRAGIPNYIKTISLINFNGSSPSQAIK 196
K +K+L+A + Y S+P+ AIK
Sbjct: 19 KQALKKLQASLKLYAD--------DSAPALAIK 43
Score = 28.4 bits (62), Expect = 1.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 258 RSATERLFGRERESSVSKDGGGEAPNY-INAT 288
+ A ++L ++S+ AP I AT
Sbjct: 19 KQALKKL-----QASLKLYADDSAPALAIKAT 45
Score = 28.0 bits (61), Expect = 2.8
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 193 QAIK-FSAN---YDPSTKPLRSVSNA 214
QA+K A+ Y + P ++ A
Sbjct: 20 QALKKLQASLKLYADDSAPALAI-KA 44
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 31.9 bits (73), Expect = 0.042
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
FN+ Q + E+S KGD+ +V
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTR 39
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 32.1 bits (73), Expect = 0.043
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEESD 82
+++ E+SFR GD+ ++ E +
Sbjct: 24 YDFVAVSDEEISFRAGDMLNLALKEQQPKVRG 55
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 32.0 bits (73), Expect = 0.044
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+Y+ + + F++ D+ +
Sbjct: 17 KDYNVSDTSLLPFKRNDIITITF 39
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 32.0 bits (73), Expect = 0.047
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 38 ASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76
+S S ++ +Y +SF +GD+ ++ +
Sbjct: 2 SSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVAT 40
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 32.0 bits (73), Expect = 0.048
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E+SF KG + +V+
Sbjct: 41 YDYAANNEDELSFSKGQLINVMN 63
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 31.0 bits (71), Expect = 0.052
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y ++ E+SFR GD ++
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQ 35
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 31.6 bits (72), Expect = 0.059
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ + E++ KGD+ + E
Sbjct: 14 YSFQARQDDELNLEKGDIVIIHE 36
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 31.1 bits (71), Expect = 0.060
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ E+SF G VF +
Sbjct: 17 YACKAEHDSELSFTAGTVFDNVH 39
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 31.7 bits (72), Expect = 0.063
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEESD 82
F+Y+ E++ R+GD V+ + + +
Sbjct: 36 FDYEAAGDEELTLRRGDRVQVLSQDCAVSGDE 67
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 31.2 bits (71), Expect = 0.064
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELENMMEE 80
++YD E+S +V V + M +
Sbjct: 24 YDYDAANSTELSLLADEVITVFSVVGMDSD 53
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 31.7 bits (72), Expect = 0.065
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ + + E++F KG+ VIE
Sbjct: 24 YPFSSVTEEELNFEKGETMEVIE 46
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 31.2 bits (71), Expect = 0.066
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 53 YD-QPEKGEMSFRKGDVFHVIELEN 76
E++ +KGD+ ++ N
Sbjct: 7 PPYSAGGREVTMKKGDILTLLNSTN 31
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 31.1 bits (71), Expect = 0.072
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
++ E++F +G+V V E+
Sbjct: 17 YDCQADNDDELTFIEGEVIIVTGEED 42
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 31.7 bits (72), Expect = 0.072
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ EMSF GD+ V E
Sbjct: 12 YPFEARNHDEMSFNSGDIIQVDE 34
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 31.2 bits (71), Expect = 0.074
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ R + +++++
Sbjct: 27 YDYQTNDPQELALRCDEEYYLLD 49
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 31.2 bits (71), Expect = 0.076
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y E+SF D+ IE
Sbjct: 24 YDYQAAGDDEISFDPDDIITNIE 46
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 30.7 bits (70), Expect = 0.087
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 51 FNYD-QPEKGEMSFRKGDVFHVIE 73
Y P+ E+SF KGD+F V
Sbjct: 14 LPYTKVPDTDEISFLKGDMFIVHN 37
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 30.7 bits (70), Expect = 0.092
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ + E++ + GD ++++
Sbjct: 13 YDFMAESQDELTIKSGDKVYILD 35
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 30.9 bits (70), Expect = 0.10
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y E+ + GD+ V+
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVG 47
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 33.2 bits (74), Expect = 0.11
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 31 DEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76
D + G ++ ++Y+ E E+SF+ GD +E E+
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDED 460
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 30.9 bits (70), Expect = 0.11
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+K ++ GD+ V
Sbjct: 25 RVPCAYDKTALALEVGDIVKVTR 47
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 30.2 bits (69), Expect = 0.12
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F + K E+ G++ V++
Sbjct: 14 FGFVPETKEELQVMPGNIVFVLK 36
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 30.0 bits (68), Expect = 0.13
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+K ++ GD+ V
Sbjct: 10 RVPCAYDKTALALEVGDIVKVTR 32
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 30.5 bits (69), Expect = 0.13
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F + + +KGD+ +I
Sbjct: 18 FTPSPYDTDSLKLKKGDIIDIIS 40
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 29.9 bits (68), Expect = 0.13
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E+ +K + +++
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLD 33
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 32.8 bits (75), Expect = 0.14
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ + ++SF+KG+ ++
Sbjct: 9 YDYESRTETDLSFKKGERLQIVN 31
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 32.7 bits (73), Expect = 0.14
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 46 HIKTHFNYDQPEKGEMSFRKGDVFHVIELEN 76
+ F++ K E++F+ GDV ++ N
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRIN 206
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 30.0 bits (68), Expect = 0.14
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ +K ++ G++ V +
Sbjct: 15 RVPNAYDKTALALEVGELVKVTK 37
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.9 bits (68), Expect = 0.15
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E+S K +V V+E
Sbjct: 14 YDFTARNANELSVLKDEVLEVLE 36
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 32.7 bits (75), Expect = 0.16
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+N+ + ++ F KGDV ++ +
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTK 43
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 29.5 bits (67), Expect = 0.16
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E+S K DV +++
Sbjct: 8 YDFVARNSSELSVMKDDVLEILD 30
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 31.6 bits (71), Expect = 0.18
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+Y+ G++ F KG+ ++E
Sbjct: 19 HSYEPSHDGDLGFEKGEQLRILEQSG 44
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 32.4 bits (74), Expect = 0.18
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+++ +S KG+ V+ +
Sbjct: 50 YDFVASGDNTLSITKGEKLRVLGYNH 75
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 29.9 bits (68), Expect = 0.18
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ ++ E++ +G+ V++
Sbjct: 14 YEFEARNPRELTVVQGEKLEVLD 36
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 30.0 bits (68), Expect = 0.18
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F+Y ++ E+ +K + +++
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLD 36
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 32.2 bits (73), Expect = 0.20
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 212 SNAGDTLATSSPSGGSKYPPPSGPGAPPDLPPRIDRTNKPPRTNPPRSATERLFGRERES 271
G AT + +GG P P GA P P+ + NK P+ P
Sbjct: 9 GTPGVAAATQAANGGPATPAPPALGAAPTGDPK-PKKNKKPKNPTPPRPAGDNATVAAGH 67
Query: 272 SVSKDGGGEAPNYINATPHRTGAPPTNTSLERHNTTRT 309
+ ++ + PPT ++ + R
Sbjct: 68 ATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRR 105
Score = 27.2 bits (60), Expect = 8.3
Identities = 12/79 (15%), Positives = 18/79 (22%), Gaps = 11/79 (13%)
Query: 232 PSGPGAPPDLPPRIDRTNKPPRTNPPRSATERLFGRERESSVSKDGGGEAPNYINATPHR 291
P+ PG P P PP + K + P P
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAA-------PTGDPKPKKNKKP----KNPTP 53
Query: 292 TGAPPTNTSLERHNTTRTT 310
N ++ + T
Sbjct: 54 PRPAGDNATVAAGHATLRE 72
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 29.3 bits (66), Expect = 0.22
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 51 FNYD-QPEKGEMSFRKGDVFHVIE 73
Y P+ E+SF KGD+F V
Sbjct: 12 LPYTKVPDTDEISFLKGDMFIVHN 35
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 31.5 bits (71), Expect = 0.22
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+Y++ EM+ GDV V+E
Sbjct: 18 ADYEKTSGSEMALSTGDVVEVVE 40
Score = 29.6 bits (66), Expect = 0.96
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
Y E E+S +G+ VI
Sbjct: 88 KAYTAVEGDEVSLLEGEAVEVIH 110
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 29.7 bits (67), Expect = 0.23
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
Y ++S G + +++
Sbjct: 14 SAYVASGSEQLSLAPGQLILILK 36
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281,
apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 30.4 bits (68), Expect = 0.24
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+N+ ++S + GDV + E
Sbjct: 66 YNFQGSGAPQLSLQIGDVVRIQE 88
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 29.4 bits (66), Expect = 0.28
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIE 73
D + ++ R GDV V+E
Sbjct: 25 KDFWNLHDPTALNVRAGDVITVLE 48
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 29.2 bits (66), Expect = 0.29
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIE 73
YD +P E++ +G++ V
Sbjct: 16 YDFAAEPGNNELTVTEGEIITVTN 39
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 28.7 bits (65), Expect = 0.31
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ Y Q + E++ GD ++
Sbjct: 8 YAYVQKDDDEITITPGDKISLVA 30
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 29.2 bits (66), Expect = 0.32
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ E+S ++ DV V++
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLD 37
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 31.0 bits (69), Expect = 0.33
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 19 QDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
D LI R V ++ ++ +++ F+++ ++ ++ F+KGD+ + +
Sbjct: 111 LDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRD 165
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 29.2 bits (66), Expect = 0.34
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 39 SQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELE 75
S +GD ++ + + E++ ++ DV V++ E
Sbjct: 12 SSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQE 48
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 29.2 bits (66), Expect = 0.36
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E++ + +V VIE
Sbjct: 20 YSYKASQPDELTIEEHEVLEVIE 42
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 28.7 bits (65), Expect = 0.40
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E+ +GD+ +
Sbjct: 8 YDFEPENDNELRLAEGDIVFISY 30
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 28.8 bits (65), Expect = 0.40
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++++ E+ +GD+ +
Sbjct: 12 YDFEPENDNELRLAEGDIVFISY 34
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 28.5 bits (64), Expect = 0.43
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 59 GEMSFRKGDVFHVIELEN 76
E++ +KGD+ ++ N
Sbjct: 4 REVTMKKGDILTLLNSTN 21
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 29.6 bits (67), Expect = 0.43
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH 35
+++ +EAV L + +I V E+ H
Sbjct: 67 NLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 31.2 bits (71), Expect = 0.44
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ ++SF+KGD V+E
Sbjct: 15 YDYEAIHHEDLSFQKGDQMVVLE 37
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 28.3 bits (63), Expect = 0.45
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
F Y + E+S G V+E +
Sbjct: 8 FAYVAEREDELSLVXGSRVTVMEXCS 33
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 30.4 bits (68), Expect = 0.47
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+N+ ++S + GDV + E
Sbjct: 24 YNFQGSGAPQLSLQIGDVVRIQE 46
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 29.0 bits (65), Expect = 0.48
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y + E+ +K + +++
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLD 60
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 29.6 bits (66), Expect = 0.49
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 48 KTHFNYDQPEKGEMSFRKGDVFHV 71
+Y P+ ++ +G V +V
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYV 49
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 28.7 bits (64), Expect = 0.58
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 57 EKGEMSFRKGDVFHVIELEN 76
E++ +KGD+ ++ N
Sbjct: 4 GPREVTMKKGDILTLLNSTN 23
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 28.8 bits (65), Expect = 0.59
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRR 30
D+ T +EAV L ++ L V+ +
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLEVKYMK 90
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 28.4 bits (64), Expect = 0.67
Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
+ ++ +A + + ++ ++V +RDE
Sbjct: 53 VTENMSLTDAKTLIERSKGKLKMVV--QRDE 81
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 30.3 bits (68), Expect = 0.80
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELEN 76
+++ + E+ F+ GDV V++ N
Sbjct: 37 WDHVTMDDQELGFKAGDVIEVMDATN 62
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 27.7 bits (62), Expect = 0.84
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIELENMMEESD 82
YD + + E++ +KGD+ ++ ++ +
Sbjct: 14 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDS 46
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.7 bits (65), Expect = 0.90
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 40 QRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIELENMMEESDSKKCSGIIRLSAIRDMM 99
G F ++ +Y + E+ + GDV VI +N EE D G+ +
Sbjct: 138 PPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQN-PEEQDEGWLMGVKESDWNQHKK 196
Query: 100 DRGRHGL 106
G+
Sbjct: 197 LEKCRGV 203
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 27.6 bits (62), Expect = 1.1
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F + + E+ D V
Sbjct: 13 FRFVPRHEDELELEVDDPLLVEL 35
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 28.0 bits (63), Expect = 1.2
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 36
D+K T E A + + ++++L + +
Sbjct: 60 HDLKYGTPELAAQIIQASGERVNLTIARPGKPEIEL 95
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.7 bits (66), Expect = 1.2
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 218 LATSSPSGGSKYPPPSGPGAPPDLPPRIDRTNKPPRTNPPRSATERLFGRERESSV 273
T+S + +Y GP AP PP R +P
Sbjct: 81 PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136
Score = 27.8 bits (61), Expect = 4.8
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 188 GSSPSQAIKFSANYDPSTKPLRSVSNAGDTLATSSPSGGSKYPPPSGPGAPPDLPPRIDR 247
GSS S + + ++ + +S + +PP + P P PP
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVPDPAPPPPPAPAA 58
Query: 248 TNKPPRTNPPRSATERLFG 266
N P L G
Sbjct: 59 GNPPDTVTGDSVLQRILRG 77
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
++G+T EEAV L + + L+V + +
Sbjct: 85 SLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 29.1 bits (66), Expect = 1.3
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 98 MMDRGRHGLLDITPNAVDRLNYAQFYPIVIF------LRAETKSNVKELRAGIPKLN--S 149
++D GR D V+ + ++ +E ++E R K +
Sbjct: 111 LVD-GRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169
Query: 150 AQFFSVVIFLRAETKSNVKELRAGIPNYIK 179
S + T + EL I +K
Sbjct: 170 IIPTS------SVTGEGISELLDLISTLLK 193
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 27.2 bits (61), Expect = 1.4
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
F + + E+ D V
Sbjct: 10 FRFVPRHEDELELEVDDPLLVEL 32
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 27.3 bits (61), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 38 ASQRGDSFHIKTHFNYD-QPEKGEMSFRKGDVFHVIELE 75
S +KT F + K +SF +GDV ++ E
Sbjct: 1 GSSGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPE 39
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 28.1 bits (63), Expect = 1.5
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFH 46
++ +T EEAV L + D ++L V Y S+ H
Sbjct: 65 SLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY----ISRHHHHHH 105
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEY 33
++ +T EEAV L + + ++L V Y
Sbjct: 86 SLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 27.3 bits (61), Expect = 1.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 54 DQPEKGEMSFRKGDVFHVIE 73
+ + E++F GD+ V
Sbjct: 24 NVDVEAELTFCTGDIITVFG 43
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 28.1 bits (63), Expect = 1.7
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
+++ ++R EAV L I L ++
Sbjct: 84 VELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 28.2 bits (63), Expect = 1.8
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 34
+KG T+ E + ++ ++ + + + +
Sbjct: 77 SIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 109
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 27.7 bits (62), Expect = 1.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
D+K + ++AV + + L VQ+R +
Sbjct: 69 DLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 27.6 bits (62), Expect = 1.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 34
+D++ T +EA+ L ++ L + Y+
Sbjct: 61 IDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 27.7 bits (62), Expect = 2.0
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 34
+ G+++E A + + L V +
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 27.2 bits (61), Expect = 2.1
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
D++ T+E L + L V
Sbjct: 60 EDVRNATQEAVAALLKCSLGTVTLEVGRISTY 91
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 27.0 bits (60), Expect = 2.2
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIELENMMEESD 82
YD + + E++ +KGD+ ++ ++ +
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDS 53
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 28.2 bits (63), Expect = 2.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
++ + E+AV L + D ++L V +
Sbjct: 162 GLEDVMHEDAVAALKNTYDVVYLKVAKPSNA 192
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 27.1 bits (60), Expect = 2.5
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 53 YD---QPEKGEMSFRKGDVFHVIELENMMEESD 82
YD + + E++ +KGD+ ++ ++ +
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDS 53
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 26.5 bits (59), Expect = 2.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 51 FNYD-QPEKGEMSFRKGDVFHVIELEN 76
F + K +SF +GDV ++ E
Sbjct: 13 FPHTAGSNKTLLSFAQGDVITLLIPEE 39
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
+ G+T EAV L S+ D + ++V + +
Sbjct: 76 SLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 27.1 bits (60), Expect = 3.1
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIELE 75
+ Y E+ GD + +E
Sbjct: 23 YPYTPQNDDELELVPGDFIFMSPME 47
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.6 bits (59), Expect = 3.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 51 FNYDQPE-------KGEMSFRKGDVFHVIE 73
+YD + KG ++ R GDV V
Sbjct: 14 LDYDPGDGQMGGQGKGRLALRAGDVVMVYG 43
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 26.9 bits (60), Expect = 3.4
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 34
++G T ++AV L + +HL+++ +
Sbjct: 74 SLEGATHKQAVETLRNTGQVVHLLLEKGQSPTS 106
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 26.8 bits (60), Expect = 3.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 37
+ + G T EA+ L + L++ D E V
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLI--EYDVSETAV 97
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 26.9 bits (60), Expect = 3.8
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVV 37
+G+T +AV L + I + V D E V
Sbjct: 85 STEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 26.5 bits (59), Expect = 3.9
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
D++ T + + + +I L +Q D+
Sbjct: 68 KDVRNSTEQAVIDLIKEADFKIELEIQ-TFDK 98
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 26.4 bits (59), Expect = 4.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQ 27
++G E+AV L + Q + L+V+
Sbjct: 62 SVEGEQHEKAVELLKAAQGSVKLVVR 87
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 26.5 bits (59), Expect = 4.2
Identities = 4/35 (11%), Positives = 15/35 (42%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEH 35
+ ++ +A + + ++ L+V + + H
Sbjct: 52 TVTENMSLTDARKLIEKSRGKLQLVVLRDLEHHHH 86
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 26.4 bits (58), Expect = 4.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 51 FNYD--------QPEKGEMSFRKGDVFHVIE 73
F+YD + E+ F++G + V
Sbjct: 24 FDYDPLTMSPNPDAAEEELPFKEGQIIKVYG 54
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 26.6 bits (59), Expect = 4.6
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
D+ T ++AV + ++ I + V R
Sbjct: 73 DLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 26.7 bits (59), Expect = 4.8
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+++ + E++ G+ +
Sbjct: 12 YDFKAEKADELTTYVGENLFICA 34
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 26.6 bits (59), Expect = 4.8
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 44
+ G+T+ A L + + ++ ++ R + VA +
Sbjct: 66 TSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQT 109
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 26.8 bits (59), Expect = 4.9
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
+ + E+ G+ +
Sbjct: 10 YEFKAERDDELDVSPGENLSICA 32
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 26.7 bits (59), Expect = 4.9
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
+D++ + EAV + + + + IVQ+
Sbjct: 81 VDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 27.7 bits (60), Expect = 4.9
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 50 HFNYDQPEKGEMSFRKGDVFHVIELEN 76
+K ++ GD+ V +
Sbjct: 245 KRVPCAYDKTALALEVGDIVKVTRMNI 271
Score = 27.3 bits (59), Expect = 7.1
Identities = 6/56 (10%), Positives = 24/56 (42%)
Query: 18 LQDQIHLIVQNRRDEYEHVVASQRGDSFHIKTHFNYDQPEKGEMSFRKGDVFHVIE 73
++ + + + +++T +++ + ++ F+KG++ +IE
Sbjct: 99 IEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIE 154
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 27.4 bits (61), Expect = 5.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
+ + E+AV L +D + L + R+DE
Sbjct: 167 RLDSCSMEDAVQILQQCEDLVKLKI--RKDE 195
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 26.6 bits (59), Expect = 5.0
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 39
+ G + + A + + ++ L+ D + +
Sbjct: 83 ILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASG 120
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 27.8 bits (62), Expect = 5.1
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 44 SFHIKTHFNYDQPEKGEMSFRKGDVFHVIELENMMEESDSKKCSGIIRLS 93
S + ++Y E++F KG + +V+ E+ + + SG + L
Sbjct: 2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKED--PDWWKGEVSGQVGLF 49
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 26.6 bits (59), Expect = 5.2
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 39
+++G+T E+ L + + + ++V V +
Sbjct: 70 NVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 26.6 bits (59), Expect = 5.2
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVAS 39
D+K + ++AV + + L VQ+R ++
Sbjct: 78 QDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 26.7 bits (59), Expect = 5.9
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
+ + T EE + + + V+ +
Sbjct: 80 IPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 26.2 bits (58), Expect = 6.0
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRRDE 32
+ ++ +A + + ++ ++VQ RDE
Sbjct: 54 TVTENMSLTDAKTLIERSKGKLKMVVQ--RDE 83
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 26.6 bits (59), Expect = 6.1
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 1 MDMKGITREEAVLFLLSLQDQIHLIVQNRR 30
+KG T +A+ L ++ ++ R+
Sbjct: 73 KSLKGTTHHDALAILRQAREPRQAVIVTRK 102
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 26.3 bits (58), Expect = 6.4
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQ 27
+KG T+ E + ++ ++ +
Sbjct: 82 SIKGKTKVEVAKMIQEVKGEVTIHYN 107
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 27.6 bits (61), Expect = 6.5
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 189 SSPSQAIKFSANYDPSTKPLRSVSNAGDTLATSSPSGGSKYPPPSGPGAPPDLPPRIDRT 248
+ S SA+ + + ++ + P G PPP G PP P
Sbjct: 356 AGESSDAAPSADAAQMKEMM-AMMQKMQQQQAAYPPQGY-APPPQGY--PPQGYPPQ--- 408
Query: 249 NKPPRTNPPR 258
PP+ PP+
Sbjct: 409 GYPPQGYPPQ 418
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 27.0 bits (60), Expect = 7.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQ 27
+ G T EA+ L + L+++
Sbjct: 167 RLLGTTHAEAMSILKQCGQEATLLIE 192
Score = 26.6 bits (59), Expect = 8.3
Identities = 5/47 (10%), Positives = 18/47 (38%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDSFHIK 48
++ +E + L ++ +++ L V+ +S + +
Sbjct: 65 NLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVT 111
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 25.8 bits (57), Expect = 7.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHV 36
+ +T EA + D + L V R + +
Sbjct: 58 NTSNMTHLEAQNRIKGCTDNLTLTVA-RSEHESDL 91
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 25.8 bits (57), Expect = 7.9
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQ 27
D++ + E+AV + + + +VQ
Sbjct: 71 DLRDASHEQAVEAIRKAGNPVVFMVQ 96
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 25.7 bits (57), Expect = 8.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYE 34
D+ + AV L + L+V+ R+ E
Sbjct: 66 DVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPE 98
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 25.8 bits (57), Expect = 9.0
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRDEYEHVVASQRGDS 44
+ +T +A + + Q+ L + R + G S
Sbjct: 60 GTESMTHADAQDRIKAASYQLCLKID-RAETRLWSPQVSSGPS 101
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 27.1 bits (60), Expect = 9.3
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 51 FNYDQPEKGEMSFRKGDVFHVIE 73
++Y+ + ++SF+KG+ ++
Sbjct: 92 YDYESRTETDLSFKKGERLQIVN 114
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 26.5 bits (57), Expect = 9.7
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 216 DTLATSSPSGGSKYPPPSGPGAPPDLPPRIDRTNKPPRTNPPRSATER 263
+T +T P S S PP + +N PPR P R
Sbjct: 150 NTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRR 197
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 25.3 bits (56), Expect = 9.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 2 DMKGITREEAVLFLLSLQDQIHLIVQNRRD 31
++G EAV L + + V R+
Sbjct: 65 ALQGAEHHEAVEALRGAGTAVQMRVWRERE 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,672,988
Number of extensions: 282857
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 287
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.6 bits)