BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9829
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL ++K VK +R
Sbjct: 263 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 320
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 103 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 145
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 102 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 142
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL ++K VK +R
Sbjct: 131 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 188
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 7 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 47
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 8 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 50
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 8 KKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL ++K VK +R
Sbjct: 271 QRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMR 328
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 111 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 153
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 110 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 150
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 5 SDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 64
S + S II+L +R + ++ +H LLD+TP+A++RLNY Q+YPIV+F E++ +K L
Sbjct: 177 SRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKAL 236
Query: 65 RAGIPKYHTNLARQRSRVLF 84
R ++ +R+ +R L+
Sbjct: 237 R----QWLAPASRRSTRRLY 252
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
RTHF + + F +GDVFHV+DTLH G
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPG 38
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
THF + + F +GDVFHV+DTLH G
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPG 38
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 58.2 bits (139), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ LG++IFVKE+T + L EGD++LKIN T+ MS+ +ARKLI+ S+
Sbjct: 14 EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70
Query: 273 EKLSLTIRREV 283
KL L + R++
Sbjct: 71 GKLQLVVLRDL 81
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ LG++IFVKE+T + L EGD++LKIN T+ MS+ +ARKLI+ S+
Sbjct: 14 EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70
Query: 273 EKLSLTIRRE 282
KL L + R+
Sbjct: 71 GKLQLVVLRD 80
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ L + IFVKE++ ++ +A + EGDV+LKIN T+ MS+ +A+ LI+ SK
Sbjct: 13 EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 69
Query: 273 EKLSLTIRRE 282
KL + ++R+
Sbjct: 70 GKLKMVVQRD 79
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ L + IFVKE++ ++ +A + EGDV+LKIN T+ MS+ +A+ LI+ SK
Sbjct: 16 EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72
Query: 273 EKLSLTIRRE 282
KL + ++R+
Sbjct: 73 GKLKMVVQRD 82
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ L + IFVKE++ ++ +A + EGDV+LKIN T+ MS+ +A+ LI+ SK
Sbjct: 14 EYGLRLASHIFVKEISQ---DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 70
Query: 273 EKLSLTIRRE 282
KL + ++R+
Sbjct: 71 GKLKMVVQRD 80
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 104 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 146
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 103 RTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 143
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
++++R++ ++G+H +LD++ NA+ RL AQ YP+ +F++ ++ +V E+ + +
Sbjct: 179 VASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKK 238
Query: 76 ARQRS-RVLFPVGSTFVGSVLG 96
+R+ ++ G F G V G
Sbjct: 239 TYERAIKMEQEFGEYFTGVVQG 260
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 35/49 (71%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL 64
+ ++R + ++G+H +LD++ NA+ RL AQ YPI IF++ ++ N+ E+
Sbjct: 185 VQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEM 233
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
+ ++R++ ++G+H +LD++ NAV RL A +PI IF+R + NV E+ I +
Sbjct: 190 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 249
Query: 76 ARQRSRVL 83
A R+ L
Sbjct: 250 AFDRATKL 257
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
+ ++R++ ++G+H +LD++ NAV RL A +PI IF+R + NV E+ I +
Sbjct: 184 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 243
Query: 76 ARQRSRVL 83
A R+ L
Sbjct: 244 AFDRATKL 251
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNL 75
+ ++R++ ++G+H +LD++ NAV RL A +PI IF+R + NV E+ I +
Sbjct: 610 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 669
Query: 76 ARQRSRVL 83
A R+ L
Sbjct: 670 AFDRATKL 677
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 172 RTHFNYDQPEKG-----EMSFRKGDVFHVIDTLHNGVVGSWQVFRI 212
R F+YD+ + +SFR GDV HVID G WQ R+
Sbjct: 431 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDA---GDEEWWQARRV 473
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 15 RLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAET 57
+L IR + ++G +LD+ P A+ L A+F P V+F+ A T
Sbjct: 85 KLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPT 127
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 205 GSWQVFRIDFGIILGNKIFVKEVT-HRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKE 263
G W FR+ G K F +T R+ + A QL++GD+++ I+ TD M+ E
Sbjct: 18 GPWG-FRLQ-----GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 71
Query: 264 ARKLIDSSKEKLSLTIRRE 282
A+ I S+ LSLT+++
Sbjct: 72 AQNKIKSASYNLSLTLQKS 90
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 205 GSWQVFRIDFGIILGNKIFVKEVT-HRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKE 263
G W FR+ G K F +T R+ + A QL++GD+++ I+ TD M+ E
Sbjct: 11 GPWG-FRLQ-----GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE 64
Query: 264 ARKLIDSSKEKLSLTIRRE 282
A+ I S+ LSLT+++
Sbjct: 65 AQNKIKSASYNLSLTLQKS 83
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 118 GSHLTHFNYDQPEKGEMSFRKGDVFHVID 146
GS F++D E GE+ FR+GD HV+D
Sbjct: 1 GSVQALFDFDPQEDGELGFRRGDFIHVMD 29
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F++D E GE+ FR+GD HV+D
Sbjct: 7 FDFDPQEDGELGFRRGDFIHVMD 29
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F++D E GE+ FR+GD HV+D
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMD 31
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 167 SAQIKRTHFNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 205
S + R FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 154
FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 161 IAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHV 195
+ N + + R FN+ Q + E+SF KGDV HV
Sbjct: 1 MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHV 35
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 124 FNYDQPEKGEMSFRKGDVFHV 144
FN+ Q + E+SF KGDV HV
Sbjct: 15 FNFQQTNEDELSFSKGDVIHV 35
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 167 SAQIKRTHFNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 205
S + R FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 154
FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
F++D E GE+ FR+GD HV+D
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDN 188
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT 198
F++D E GE+ FR+GD HV+D
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDN 188
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 121 LTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
+T + +P+ GE++FRKGDV +++ N SW +R+ H+
Sbjct: 21 ITKCEHTRPKPGELAFRKGDVVTILEACEN---KSW--YRVKHH 59
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 173 THFNYDQPEKGEMSFRKGDVFHVIDTLHN 201
T + +P+ GE++FRKGDV +++ N
Sbjct: 22 TKCEHTRPKPGELAFRKGDVVTILEACEN 50
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 168 AQIKRTHFNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 205
+ R FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 49
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVI--------DTLHNGVVG 154
FN+ Q + E+SF KGDV HV + HNG G
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 49
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 288
+L GD++L IN T G++ +A + I + +L L IRR + P++
Sbjct: 56 RLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+L GD +L++NN P + +S + A ++ +++ LS+T+ R
Sbjct: 47 KLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G I V +V R A L GD+++ IN +GM EA+ I
Sbjct: 16 FRITGGRDFHTPIMVTKVAER----GKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR 71
Query: 270 SSKEKLSLTIRR 281
S L L + R
Sbjct: 72 QSPSPLRLQLDR 83
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G I V +V R A L GD+++ IN +GM EA+ I
Sbjct: 15 FRITGGRDFHTPIMVTKVAER----GKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR 70
Query: 270 SSKEKLSLTIRR 281
S L L + R
Sbjct: 71 QSPSPLRLQLDR 82
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 114 SKSTGSHLTH-FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
S S+G + F+Y ++SFR GD V+DT H G
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEG 41
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
F+Y ++SFR GD V+DT H G
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEG 41
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 208
RT F Y + E++FR+G++ H+I G G W+
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWK 45
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 268 IDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQ 313
I++ ++ IR + R T ST LPG NN + PL + S +
Sbjct: 99 IETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK 144
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 268 IDSSKEKLSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPSI 327
I++ ++ IR + R T ST LPG NN + PL + S + V P
Sbjct: 99 IETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEF 158
Query: 328 L 328
L
Sbjct: 159 L 159
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 27/182 (14%)
Query: 116 STGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDT----LHNGVVGSWQVFRIAHNCISAQI 170
+TG +TH PE + ++ +F H+ D +H G + + +V ++ H +
Sbjct: 44 TTGCVITHV---YPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100
Query: 171 KRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHR 230
T F D PE L V + + G+ L +
Sbjct: 101 TLTVFRADPPE-----------------LEKFNVDLMKKAGKELGLSLSPNEIGCTIADL 143
Query: 231 LDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQ 290
+ +L GD++ K N +G+ + L + K+S+ + R P+PT
Sbjct: 144 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR--PKPTLRT 201
Query: 291 ES 292
E+
Sbjct: 202 EA 203
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 217 ILGNKIFVKEVT-HRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 275
++G K F + + R+ + A L GDV+ I+ T M+ EA+ I + L
Sbjct: 19 LVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNL 78
Query: 276 SLTIRR 281
+LT+ R
Sbjct: 79 TLTVAR 84
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 230 RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 277
++ ++ A L GDVL IN T+G + K+ LI SS L++
Sbjct: 54 KIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTI 101
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 184 EMSFRKGDVFHVIDTLHNGVVGSWQV-FRIDFGIILGNKI 222
E+SFRKGD+ V++ G+ G W GI+ GN++
Sbjct: 19 ELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58
>pdb|4IFD|C Chain C, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 393
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 17 SAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLA 76
++I+D+ D G L ++T NYA YP+V R + E K H ++
Sbjct: 100 ASIKDLDDFGEEELFEVTKEEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSIL 159
Query: 77 RQR 79
R
Sbjct: 160 HSR 162
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 231 LDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
L+ +A +L+ D +L IN H + + A ++I +S E+++LTI R
Sbjct: 37 LEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIAR 87
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 231 LDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
L + A + GDV+L I+ GM+ EA+ I L++T++RE
Sbjct: 34 LKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 233 NNASAGTHQ----LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
NN GT L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 388 NNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>pdb|2QKV|A Chain A, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
pdb|2QKV|B Chain B, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
Length = 96
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 288
+L GD++ K N +G+ + + L + K+S+ + R P+P A
Sbjct: 49 KLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTR--PKPAA 94
>pdb|2KE4|A Chain A, The Nmr Structure Of The Tc10 And Cdc42 Interacting
Domain Of Cip4
Length = 98
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 AETKSNVKELRAGIPKYHTNLARQRSRVL 83
AET SN++ L+ + KY LA SRVL
Sbjct: 65 AETLSNIERLKLEVQKYEAWLAEAESRVL 93
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 224 VKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
V + ++ + A L GD++ IN P G+ E +L+ S K+S+T
Sbjct: 33 VHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSIT 87
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 227 VTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
V HR GT +L GD LL I+N D S+++A +++ ++ + L IR++
Sbjct: 147 VAHR------TGTLEL--GDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,416,332
Number of Sequences: 62578
Number of extensions: 435751
Number of successful extensions: 1330
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 105
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)