Query psy9829
Match_columns 333
No_of_seqs 293 out of 553
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:43:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3580|consensus 100.0 4.1E-29 8.9E-34 252.1 13.3 187 85-285 17-281 (1027)
2 KOG0708|consensus 99.7 4.5E-18 9.7E-23 165.8 6.9 97 2-98 237-334 (359)
3 KOG3209|consensus 99.7 5E-16 1.1E-20 160.2 12.9 176 87-281 764-981 (984)
4 KOG0609|consensus 99.6 3.2E-16 6.9E-21 158.4 6.3 95 1-95 406-511 (542)
5 KOG3209|consensus 99.6 8.5E-15 1.8E-19 151.2 15.7 165 87-282 659-837 (984)
6 PF00625 Guanylate_kin: Guanyl 99.3 1.8E-12 4E-17 115.2 4.4 95 1-95 68-165 (183)
7 smart00072 GuKc Guanylate kina 99.2 1.1E-11 2.3E-16 110.7 5.7 96 1-96 68-166 (184)
8 KOG3580|consensus 99.2 1.2E-11 2.5E-16 126.6 5.3 91 4-94 665-759 (1027)
9 PF00595 PDZ: PDZ domain (Also 99.2 4.3E-11 9.4E-16 92.8 6.0 57 220-280 25-81 (81)
10 PRK14737 gmk guanylate kinase; 98.9 1.6E-09 3.5E-14 97.7 4.7 95 1-95 69-167 (186)
11 KOG3550|consensus 98.8 6.9E-09 1.5E-13 91.0 6.6 57 220-279 115-171 (207)
12 TIGR02037 degP_htrA_DO peripla 98.8 1.2E-07 2.7E-12 95.3 15.2 149 107-284 256-422 (428)
13 PLN02772 guanylate kinase 98.8 6E-09 1.3E-13 104.1 5.6 86 1-86 201-287 (398)
14 KOG3550|consensus 98.7 2.4E-08 5.2E-13 87.6 6.4 71 87-172 100-173 (207)
15 COG0194 Gmk Guanylate kinase [ 98.6 3.6E-08 7.8E-13 89.4 5.0 86 1-86 68-154 (191)
16 KOG1892|consensus 98.6 1.8E-07 3.9E-12 100.2 9.4 60 220-282 960-1019(1629)
17 PF00595 PDZ: PDZ domain (Also 98.6 7.6E-08 1.7E-12 74.5 4.7 71 86-171 8-81 (81)
18 PRK10942 serine endoprotease; 98.5 2.2E-06 4.8E-11 87.8 14.9 153 107-284 310-466 (473)
19 PRK10139 serine endoprotease; 98.5 2.3E-06 5.1E-11 87.3 14.6 147 107-284 289-448 (455)
20 KOG0707|consensus 98.5 1.4E-07 3.1E-12 87.8 5.2 87 3-89 105-192 (231)
21 smart00228 PDZ Domain present 98.5 5.1E-07 1.1E-11 69.0 7.4 59 220-282 26-84 (85)
22 cd00992 PDZ_signaling PDZ doma 98.5 6.7E-07 1.4E-11 68.5 7.3 56 220-279 26-81 (82)
23 cd00136 PDZ PDZ domain, also c 98.3 2.2E-06 4.7E-11 64.0 6.9 55 221-279 14-69 (70)
24 TIGR00054 RIP metalloprotease 98.1 1.6E-05 3.5E-10 80.3 10.8 134 107-284 127-262 (420)
25 KOG3571|consensus 98.1 5.6E-06 1.2E-10 84.2 6.6 63 220-285 277-342 (626)
26 KOG3553|consensus 98.1 8.2E-07 1.8E-11 73.1 0.1 63 220-287 59-121 (124)
27 KOG3551|consensus 98.0 3.6E-06 7.7E-11 83.4 4.0 73 87-174 95-170 (506)
28 PRK10779 zinc metallopeptidase 98.0 4.5E-05 9.8E-10 77.6 11.9 145 111-284 129-280 (449)
29 PRK14738 gmk guanylate kinase; 98.0 7.5E-06 1.6E-10 74.6 4.7 81 3-83 80-161 (206)
30 KOG3605|consensus 97.9 6.2E-06 1.3E-10 86.0 3.9 150 87-279 656-811 (829)
31 KOG3549|consensus 97.8 6.1E-05 1.3E-09 74.0 8.5 57 221-280 81-137 (505)
32 PF13180 PDZ_2: PDZ domain; PD 97.7 7.3E-05 1.6E-09 58.1 6.0 59 220-284 14-74 (82)
33 cd00988 PDZ_CTP_protease PDZ d 97.7 0.00014 3E-09 56.2 7.1 59 220-282 13-72 (85)
34 cd00071 GMPK Guanosine monopho 97.7 2.1E-05 4.5E-10 67.4 2.5 54 3-56 67-120 (137)
35 KOG3571|consensus 97.7 7.7E-05 1.7E-09 76.1 6.2 73 87-172 260-338 (626)
36 TIGR03263 guanyl_kin guanylate 97.6 6.2E-05 1.3E-09 66.0 4.8 76 7-82 72-148 (180)
37 cd00136 PDZ PDZ domain, also c 97.6 0.00014 2.9E-09 54.2 5.8 64 89-170 2-69 (70)
38 cd00991 PDZ_archaeal_metallopr 97.6 0.00026 5.7E-09 54.8 7.5 58 220-283 10-69 (79)
39 cd00986 PDZ_LON_protease PDZ d 97.6 0.00026 5.5E-09 54.5 7.4 56 221-283 9-66 (79)
40 cd00992 PDZ_signaling PDZ doma 97.6 0.00017 3.7E-09 55.0 6.3 68 87-170 11-81 (82)
41 KOG3552|consensus 97.6 9.2E-05 2E-09 79.9 6.2 64 214-282 69-132 (1298)
42 KOG3553|consensus 97.6 0.00011 2.4E-09 60.7 4.8 74 88-172 35-115 (124)
43 KOG3551|consensus 97.5 6.7E-05 1.5E-09 74.6 3.9 61 220-283 110-172 (506)
44 cd00989 PDZ_metalloprotease PD 97.5 0.00032 7E-09 53.2 6.6 57 221-283 13-70 (79)
45 KOG3651|consensus 97.5 0.00021 4.6E-09 69.2 6.4 58 221-281 31-88 (429)
46 cd00987 PDZ_serine_protease PD 97.4 0.00061 1.3E-08 52.8 7.5 58 220-283 24-83 (90)
47 smart00228 PDZ Domain present 97.3 0.00091 2E-08 50.8 6.7 69 88-172 12-83 (85)
48 cd00990 PDZ_glycyl_aminopeptid 97.2 0.00073 1.6E-08 51.6 5.6 56 221-283 13-68 (80)
49 KOG3606|consensus 97.2 0.0019 4.1E-08 61.9 8.9 64 213-279 187-250 (358)
50 COG0793 Prc Periplasmic protea 97.1 0.00074 1.6E-08 68.2 6.1 59 220-282 112-171 (406)
51 KOG0609|consensus 97.1 0.00059 1.3E-08 70.3 5.3 57 221-280 147-203 (542)
52 PRK00300 gmk guanylate kinase; 97.1 0.00079 1.7E-08 60.3 5.1 72 10-81 79-151 (205)
53 KOG3549|consensus 97.0 0.00072 1.6E-08 66.7 4.7 70 88-172 66-138 (505)
54 TIGR00225 prc C-terminal pepti 97.0 0.0016 3.4E-08 63.7 7.0 59 221-283 63-122 (334)
55 PLN00049 carboxyl-terminal pro 97.0 0.0018 3.9E-08 64.9 7.0 59 221-283 103-162 (389)
56 KOG1892|consensus 96.9 0.0013 2.8E-08 71.6 6.1 75 87-173 942-1019(1629)
57 PF13180 PDZ_2: PDZ domain; PD 96.9 0.0015 3.4E-08 50.6 4.9 56 107-172 13-71 (82)
58 TIGR02037 degP_htrA_DO peripla 96.7 0.0029 6.3E-08 63.8 6.2 61 219-285 256-318 (428)
59 PRK11186 carboxy-terminal prot 96.7 0.0034 7.4E-08 67.2 6.7 59 221-282 256-320 (667)
60 cd00988 PDZ_CTP_protease PDZ d 96.6 0.0083 1.8E-07 46.1 6.5 65 89-172 3-71 (85)
61 KOG3605|consensus 96.4 0.0028 6.1E-08 66.7 3.6 57 222-281 675-733 (829)
62 KOG4371|consensus 96.3 0.013 2.9E-07 64.5 8.4 143 127-283 1178-1330(1332)
63 PRK10139 serine endoprotease; 96.2 0.014 3.1E-07 59.8 7.5 65 214-284 284-350 (455)
64 TIGR01713 typeII_sec_gspC gene 96.1 0.016 3.5E-07 55.3 6.8 60 220-285 191-252 (259)
65 KOG3542|consensus 96.0 0.0045 9.7E-08 65.6 3.1 55 220-279 562-616 (1283)
66 TIGR02038 protease_degS peripl 95.6 0.029 6.3E-07 55.5 6.8 58 220-283 278-337 (351)
67 cd00991 PDZ_archaeal_metallopr 95.6 0.031 6.8E-07 43.1 5.6 57 106-172 8-67 (79)
68 cd00987 PDZ_serine_protease PD 95.5 0.03 6.6E-07 43.2 5.4 56 107-172 23-81 (90)
69 PRK10942 serine endoprotease; 95.5 0.028 6E-07 57.9 6.3 60 220-285 311-372 (473)
70 PRK10898 serine endoprotease; 95.1 0.045 9.8E-07 54.2 6.3 58 220-283 279-338 (353)
71 PRK10779 zinc metallopeptidase 95.1 0.027 5.9E-07 57.4 4.8 56 223-284 129-186 (449)
72 PRK09681 putative type II secr 95.1 0.026 5.7E-07 54.4 4.3 60 225-287 209-270 (276)
73 cd00986 PDZ_LON_protease PDZ d 94.9 0.075 1.6E-06 40.6 5.6 54 108-172 8-64 (79)
74 cd00990 PDZ_glycyl_aminopeptid 94.8 0.06 1.3E-06 40.9 5.0 54 106-172 10-66 (80)
75 cd00989 PDZ_metalloprotease PD 94.7 0.068 1.5E-06 40.3 5.0 55 108-172 12-68 (79)
76 PF14685 Tricorn_PDZ: Tricorn 93.2 0.37 8E-06 38.9 6.8 63 220-284 12-81 (88)
77 PRK11186 carboxy-terminal prot 93.0 0.18 4E-06 54.2 6.1 67 88-172 244-319 (667)
78 COG0793 Prc Periplasmic protea 92.7 0.24 5.1E-06 50.3 6.1 67 89-173 101-171 (406)
79 TIGR00054 RIP metalloprotease 91.8 0.24 5.2E-06 50.2 5.0 56 221-282 129-184 (420)
80 KOG3552|consensus 91.5 0.28 6E-06 54.1 5.2 53 110-173 77-132 (1298)
81 PLN00049 carboxyl-terminal pro 91.5 0.56 1.2E-05 47.1 7.2 73 87-172 84-160 (389)
82 TIGR03279 cyano_FeS_chp putati 91.1 0.84 1.8E-05 46.8 8.0 127 112-279 2-146 (433)
83 TIGR01713 typeII_sec_gspC gene 91.1 0.34 7.4E-06 46.3 4.9 56 107-172 190-248 (259)
84 KOG3606|consensus 90.8 0.54 1.2E-05 45.5 5.9 57 88-153 171-231 (358)
85 TIGR02860 spore_IV_B stage IV 90.8 0.63 1.4E-05 47.3 6.8 67 215-284 99-172 (402)
86 COG0265 DegQ Trypsin-like seri 90.1 0.54 1.2E-05 46.0 5.5 66 214-284 264-330 (347)
87 TIGR03279 cyano_FeS_chp putati 90.0 0.45 9.8E-06 48.7 5.0 49 224-280 2-50 (433)
88 COG3031 PulC Type II secretory 89.5 1.5 3.2E-05 41.9 7.5 63 221-286 205-269 (275)
89 TIGR00225 prc C-terminal pepti 88.4 0.95 2.1E-05 44.3 5.9 66 88-172 51-120 (334)
90 TIGR02038 protease_degS peripl 88.2 0.79 1.7E-05 45.4 5.2 56 107-172 277-335 (351)
91 KOG3938|consensus 87.9 0.38 8.3E-06 46.4 2.6 52 220-274 149-200 (334)
92 PRK10898 serine endoprotease; 87.6 1 2.2E-05 44.8 5.5 56 107-172 278-336 (353)
93 PRK10078 ribose 1,5-bisphospho 87.5 1.1 2.5E-05 39.7 5.3 74 7-81 71-145 (186)
94 KOG3651|consensus 87.2 1.8 3.9E-05 42.6 6.7 68 87-170 15-86 (429)
95 COG3975 Predicted protease wit 86.3 1.1 2.3E-05 46.9 5.0 57 213-283 452-513 (558)
96 KOG1421|consensus 86.2 2 4.4E-05 46.4 7.0 133 109-269 304-448 (955)
97 COG1105 FruK Fructose-1-phosph 85.4 3.4 7.4E-05 40.7 7.8 85 22-113 155-239 (310)
98 KOG3129|consensus 84.7 2.4 5.1E-05 39.7 5.9 60 222-285 141-202 (231)
99 KOG0606|consensus 84.7 1.7 3.6E-05 49.1 5.8 52 224-279 662-713 (1205)
100 TIGR02322 phosphon_PhnN phosph 84.0 2 4.4E-05 37.4 5.1 70 10-80 75-144 (179)
101 COG3480 SdrC Predicted secrete 83.4 2.4 5.1E-05 41.9 5.6 57 220-283 130-188 (342)
102 PF14685 Tricorn_PDZ: Tricorn 82.8 3.6 7.8E-05 33.2 5.6 60 107-172 11-78 (88)
103 KOG4407|consensus 82.5 1.5 3.2E-05 50.2 4.3 56 220-279 143-198 (1973)
104 PRK09681 putative type II secr 82.4 1.2 2.6E-05 43.2 3.2 56 110-172 206-264 (276)
105 KOG1421|consensus 81.2 2.8 6.1E-05 45.3 5.6 58 221-285 304-362 (955)
106 PF12812 PDZ_1: PDZ-like domai 76.3 4 8.7E-05 32.0 3.9 52 214-273 26-77 (78)
107 KOG4371|consensus 74.5 3.2 6.8E-05 46.7 3.8 62 220-285 1169-1230(1332)
108 COG3031 PulC Type II secretory 72.8 7.1 0.00015 37.3 5.2 43 132-174 221-266 (275)
109 KOG1703|consensus 69.3 1.9 4E-05 44.7 0.6 64 219-286 20-83 (479)
110 KOG1320|consensus 67.7 11 0.00024 39.2 5.8 60 220-285 398-459 (473)
111 PF07653 SH3_2: Variant SH3 do 65.5 5.2 0.00011 28.6 2.1 24 122-145 4-27 (55)
112 PF04495 GRASP55_65: GRASP55/6 62.6 14 0.0003 32.1 4.6 56 220-281 43-100 (138)
113 COG3480 SdrC Predicted secrete 61.1 16 0.00034 36.3 5.2 55 108-173 130-187 (342)
114 PF14604 SH3_9: Variant SH3 do 58.3 10 0.00022 26.7 2.6 23 123-145 2-24 (49)
115 COG2985 Predicted permease [Ge 58.0 50 0.0011 34.8 8.4 134 99-276 221-363 (544)
116 smart00326 SH3 Src homology 3 56.7 11 0.00025 25.5 2.6 26 122-147 7-32 (58)
117 PF00018 SH3_1: SH3 domain; I 53.6 12 0.00025 25.9 2.2 22 123-144 3-24 (48)
118 KOG1738|consensus 52.2 15 0.00031 39.5 3.5 69 87-172 212-283 (638)
119 KOG1320|consensus 50.9 29 0.00062 36.3 5.4 55 108-172 398-455 (473)
120 KOG1738|consensus 49.1 25 0.00053 37.8 4.6 62 220-284 225-286 (638)
121 KOG3532|consensus 48.8 39 0.00085 37.0 6.0 57 221-283 399-455 (1051)
122 COG0265 DegQ Trypsin-like seri 48.2 37 0.0008 33.2 5.5 58 106-173 268-328 (347)
123 KOG3129|consensus 47.3 32 0.00068 32.4 4.5 27 107-143 138-164 (231)
124 TIGR02860 spore_IV_B stage IV 45.0 23 0.00049 36.2 3.6 44 128-172 124-169 (402)
125 cd00227 CPT Chloramphenicol (C 44.2 44 0.00094 29.1 4.9 58 11-68 70-132 (175)
126 KOG2856|consensus 43.9 9 0.0002 38.7 0.5 63 84-152 387-450 (472)
127 PRK03818 putative transporter; 42.8 1E+02 0.0022 32.7 8.2 32 221-252 316-347 (552)
128 PRK04972 putative transporter; 41.6 1.2E+02 0.0027 32.1 8.5 31 221-251 328-358 (558)
129 PRK13810 orotate phosphoribosy 41.5 44 0.00096 30.3 4.6 38 240-277 117-154 (187)
130 KOG2199|consensus 40.8 18 0.00038 37.0 2.0 25 120-144 218-242 (462)
131 cd00174 SH3 Src homology 3 dom 35.4 39 0.00084 22.5 2.5 23 122-144 4-26 (54)
132 KOG3812|consensus 33.9 93 0.002 31.5 5.7 68 28-95 264-336 (475)
133 PRK15279 type III secretion pr 31.9 9 0.00019 35.3 -1.5 34 119-152 61-99 (240)
134 PF01455 HupF_HypC: HupF/HypC 29.0 44 0.00096 25.5 2.1 30 241-270 37-66 (68)
135 TIGR01744 XPRTase xanthine pho 28.6 97 0.0021 28.2 4.6 41 242-282 114-157 (191)
136 KOG3542|consensus 28.1 36 0.00077 37.3 1.9 69 87-172 547-618 (1283)
137 COG0461 PyrE Orotate phosphori 27.7 1.1E+02 0.0023 28.4 4.8 43 240-282 107-152 (201)
138 PRK08356 hypothetical protein; 25.7 25 0.00055 31.3 0.3 23 48-70 116-138 (195)
139 KOG2921|consensus 25.3 80 0.0017 32.5 3.7 56 96-161 209-265 (484)
140 PRK13809 orotate phosphoribosy 25.0 1.3E+02 0.0028 27.8 4.8 35 241-275 114-148 (206)
141 PRK05500 bifunctional orotidin 24.2 1.1E+02 0.0024 32.0 4.7 47 237-283 385-434 (477)
142 PRK13812 orotate phosphoribosy 23.5 1.3E+02 0.0027 27.0 4.4 35 241-275 103-137 (176)
143 PRK14731 coaE dephospho-CoA ki 23.0 2E+02 0.0043 26.0 5.6 54 24-79 112-166 (208)
144 TIGR00336 pyrE orotate phospho 22.1 1.4E+02 0.0031 26.3 4.4 36 241-276 104-139 (173)
145 PHA02757 hypothetical protein; 21.0 90 0.0019 24.1 2.4 28 14-41 33-60 (75)
146 KOG1945|consensus 20.5 68 0.0015 32.4 2.1 66 213-282 124-189 (377)
147 TIGR00074 hypC_hupF hydrogenas 20.5 1.4E+02 0.003 23.4 3.5 30 241-270 35-64 (76)
148 PRK09219 xanthine phosphoribos 20.0 1.6E+02 0.0035 26.7 4.3 36 241-276 113-148 (189)
No 1
>KOG3580|consensus
Probab=99.96 E-value=4.1e-29 Score=252.08 Aligned_cols=187 Identities=28% Similarity=0.361 Sum_probs=145.5
Q ss_pred cccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh
Q psy9829 85 PVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI 161 (333)
Q Consensus 85 E~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~ 161 (333)
..+.||||+|+||+|||||.|++.+|+||+|.|| |||+|.| +.||+ ++||++++.+|. +|++.||.
T Consensus 17 dp~rGFGIAiSGGRDnPhf~~getSiViSDVlpG---------GPAeG~L--QenDrvvMVNGvsMenv~haFAvQqLrk 85 (1027)
T KOG3580|consen 17 DPKRGFGIAISGGRDNPHFENGETSIVISDVLPG---------GPAEGLL--QENDRVVMVNGVSMENVLHAFAVQQLRK 85 (1027)
T ss_pred CCCCcceeEeecCCCCCCccCCceeEEEeeccCC---------CCccccc--ccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence 4588999999999999999999999999999995 6889976 99999 699999999996 78999999
Q ss_pred cCCceEEEEEEeeccC-----CCCCCC--C-----------CCCC---------------------------CCce----
Q psy9829 162 AHNCISAQIKRTHFNY-----DQPEKG--E-----------MSFR---------------------------KGDV---- 192 (333)
Q Consensus 162 ~g~~v~L~v~R~~~~~-----~~p~~~--~-----------l~~~---------------------------~g~~---- 192 (333)
+++...++|||.+... +.|+.+ + -.|. +++.
T Consensus 86 sgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsr 165 (1027)
T KOG3580|consen 86 SGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 165 (1027)
T ss_pred hccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccc
Confidence 9999999999965322 112100 0 0000 0000
Q ss_pred eE---------------Eeee---c--CCCccc------cccceeecccccccCeEEEEEEccCcccCccccCCCCCCCC
Q psy9829 193 FH---------------VIDT---L--HNGVVG------SWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGD 246 (333)
Q Consensus 193 ~h---------------v~~s---l--~~~~lG------~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD 246 (333)
-| ++.+ + ..+..| -|.--.++||+.|++.||||+|+.. |+|++||+||+||
T Consensus 166 er~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~---gLAardgnlqEGD 242 (1027)
T KOG3580|consen 166 ERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRT---GLAARDGNLQEGD 242 (1027)
T ss_pred ccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhccc---chhhccCCccccc
Confidence 00 0000 0 000000 1111257899999999999999999 9999999999999
Q ss_pred EEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829 247 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 285 (333)
Q Consensus 247 ~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~ 285 (333)
+||.|||..++|||+.+|+++|+.++.+|.|+|+|+..+
T Consensus 243 iiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q 281 (1027)
T KOG3580|consen 243 IILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ 281 (1027)
T ss_pred EEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence 999999999999999999999999999999999998654
No 2
>KOG0708|consensus
Probab=99.72 E-value=4.5e-18 Score=165.77 Aligned_cols=97 Identities=27% Similarity=0.442 Sum_probs=88.8
Q ss_pred CCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCc-chhhHHHHHh
Q psy9829 2 MEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK-YHTNLARQRS 80 (333)
Q Consensus 2 ~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~E-s~~ki~~rae 80 (333)
++.+.+.+.++|||++||++|+++||||||||+++||++|+.++||||||||+|+|.++++++|.+.++ .+++++.++.
T Consensus 237 I~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~ 316 (359)
T KOG0708|consen 237 IDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERAR 316 (359)
T ss_pred eeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHH
Confidence 345566678999999999999999999999999999999999999999999999999999999988777 6789999999
Q ss_pred hccccccceeeEEEeccc
Q psy9829 81 RVLFPVGSTFVGSVLGAR 98 (333)
Q Consensus 81 r~~qE~G~~~g~~i~gg~ 98 (333)
++++|++..|...|.||.
T Consensus 317 klEqe~~~~~t~vv~~~s 334 (359)
T KOG0708|consen 317 KLEQELDRYFTLVVQGGS 334 (359)
T ss_pred HhHhhhhhceEEEEeccc
Confidence 999999999999998664
No 3
>KOG3209|consensus
Probab=99.66 E-value=5e-16 Score=160.20 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=122.9
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g 163 (333)
+.||||.|.--...|.- + |-.|++|| ||+..++|+|||+ ++||+.+..++. .-++.+|.+|
T Consensus 764 NeGFGFVi~sS~~kp~s--g-----iGrIieGS---------PAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaG 827 (984)
T KOG3209|consen 764 NEGFGFVIMSSQNKPES--G-----IGRIIEGS---------PADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAG 827 (984)
T ss_pred CCceeEEEEecccCCCC--C-----ccccccCC---------hhHhhccccccceEEEecCeeeeccCchhHHHHHHhcC
Confidence 78999999998888773 2 89999987 7899999999999 699999999986 4488999999
Q ss_pred CceEEEEEEeeccCCCCC-CCC-C--CC----CCCceeEEe-------------eecCCCccccccce------------
Q psy9829 164 NCISAQIKRTHFNYDQPE-KGE-M--SF----RKGDVFHVI-------------DTLHNGVVGSWQVF------------ 210 (333)
Q Consensus 164 ~~v~L~v~R~~~~~~~p~-~~~-l--~~----~~g~~~hv~-------------~sl~~~~lG~~~~~------------ 210 (333)
.+|+|.|--.-...++++ .+. . .| .-+-.++++ ++......+.....
T Consensus 828 lsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG 907 (984)
T KOG3209|consen 828 LSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERG 907 (984)
T ss_pred ceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecc
Confidence 999999742111111100 000 0 00 000001111 00000000111100
Q ss_pred eecccccccC------eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829 211 RIDFGIILGN------KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281 (333)
Q Consensus 211 ~~d~G~~l~~------~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R 281 (333)
..-||+++.+ .+||.++.+. |+|-+|||+++||.|+.|||.++.+|||..|..+||+-..++.|.+.|
T Consensus 908 ~kGFGFSiRGGreynM~LfVLRlAeD---GPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~ 981 (984)
T KOG3209|consen 908 AKGFGFSIRGGREYNMDLFVLRLAED---GPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRR 981 (984)
T ss_pred ccccceEeecccccccceEEEEeccC---CCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEecc
Confidence 1125666643 6999999999 999999999999999999999999999999999999988888777654
No 4
>KOG0609|consensus
Probab=99.62 E-value=3.2e-16 Score=158.35 Aligned_cols=95 Identities=21% Similarity=0.343 Sum_probs=87.9
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcC----------CCc
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG----------IPK 70 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~----------~~E 70 (333)
|+|.|++++++++|+++|||.|+++||+||||+.||++|.|++++|.||||||+||+++.++++|+. .++
T Consensus 406 ~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d 485 (542)
T KOG0609|consen 406 FLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTD 485 (542)
T ss_pred ceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCH
Confidence 7899999999999999999999999999999999999999999999999999999999999988763 233
Q ss_pred -chhhHHHHHhhccccccceeeEEEe
Q psy9829 71 -YHTNLARQRSRVLFPVGSTFVGSVL 95 (333)
Q Consensus 71 -s~~ki~~raer~~qE~G~~~g~~i~ 95 (333)
+..+|.++++++++.+|+.|.+.|.
T Consensus 486 ~~Lq~i~~eS~~ie~~yghyfD~iIv 511 (542)
T KOG0609|consen 486 EDLQEIIDESARIEQQYGHYFDLIIV 511 (542)
T ss_pred HHHHHHHHHHHHHHHHhhhheeEEEE
Confidence 4588999999999999999998886
No 5
>KOG3209|consensus
Probab=99.61 E-value=8.5e-15 Score=151.24 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=117.9
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcch--hhhhhhh-c
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVG--SWQVFRI-A 162 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~--a~~alr~-~ 162 (333)
-.||||-|.||... +..|||-.|+|+|+ |+.++|||.||- +-|.++.|.|.++ +++.+.. +
T Consensus 659 esGFGFRiLGG~ep------~qpi~iG~Iv~lGa---------Ae~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AA 723 (984)
T KOG3209|consen 659 ESGFGFRILGGDEP------GQPIYIGAIVPLGA---------AEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAA 723 (984)
T ss_pred ccccceEEecCCCC------CCeeEEeeeeeccc---------ccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHH
Confidence 67999999999642 46799999999765 566777799999 6899999999963 3444432 3
Q ss_pred -CCceEEEEEEeeccCCCCCCCCCCCCCCc--eeEEeeecCCCccccccceeeccccccc-------CeEEEEEEccCcc
Q psy9829 163 -HNCISAQIKRTHFNYDQPEKGEMSFRKGD--VFHVIDTLHNGVVGSWQVFRIDFGIILG-------NKIFVKEVTHRLD 232 (333)
Q Consensus 163 -g~~v~L~v~R~~~~~~~p~~~~l~~~~g~--~~hv~~sl~~~~lG~~~~~~~d~G~~l~-------~~IfI~~I~~g~~ 232 (333)
..-|.|.|||...-.+. ..+..+. ++. .+.|. ++ ..-++-||+++- ++ |-+|.+|
T Consensus 724 rnghV~LtVRRkv~~~~~-~rsp~~s-~~~~~~yDV~--lh-------R~ENeGFGFVi~sS~~kp~sg--iGrIieG-- 788 (984)
T KOG3209|consen 724 RNGHVNLTVRRKVRTGPA-RRSPRNS-AAPSGPYDVV--LH-------RKENEGFGFVIMSSQNKPESG--IGRIIEG-- 788 (984)
T ss_pred hcCceEEEEeeeeeeccc-cCCcccc-cCCCCCeeeE--Ee-------cccCCceeEEEEecccCCCCC--ccccccC--
Confidence 44599999985533221 1111100 111 12221 00 001233555442 23 8899999
Q ss_pred cCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 233 NNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 233 ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
++|++-|+|++||+|++|||.+.-+|||.+-+++||.+.-.|+|+|.=.
T Consensus 789 -SPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ 837 (984)
T KOG3209|consen 789 -SPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPP 837 (984)
T ss_pred -ChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcCh
Confidence 9999999999999999999999999999999999999999999998543
No 6
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.29 E-value=1.8e-12 Score=115.23 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=82.5
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhh-hcCCCcchhhHHHHH
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKEL-RAGIPKYHTNLARQR 79 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~l-r~~~~Es~~ki~~ra 79 (333)
|+|...+...+++|+.++|++++++|||||||++++++++|+...++|++|||+|||.+.|++. +.+..++.+.+..+.
T Consensus 68 fie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~ 147 (183)
T PF00625_consen 68 FIEYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERL 147 (183)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHH
T ss_pred EEEEeeecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHH
Confidence 3566677888999999999999999999999999999999999999999999999999998855 566656677888888
Q ss_pred hhccccccce--eeEEEe
Q psy9829 80 SRVLFPVGST--FVGSVL 95 (333)
Q Consensus 80 er~~qE~G~~--~g~~i~ 95 (333)
++...+++.. |...|.
T Consensus 148 ~~~~~~~~~~~~fd~vi~ 165 (183)
T PF00625_consen 148 ERAEKEFEHYNEFDYVIV 165 (183)
T ss_dssp HHHHHHHGGGGGSSEEEE
T ss_pred HHHHHHHhHhhcCCEEEE
Confidence 8888777766 888876
No 7
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.23 E-value=1.1e-11 Score=110.68 Aligned_cols=96 Identities=24% Similarity=0.362 Sum_probs=78.9
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR 79 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra 79 (333)
|+|...+.+++++|++++|++++++||+||||++++++++|+...++|++|||+|||.+.|+ +++.|..++.+.+.+|.
T Consensus 68 fve~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl 147 (184)
T smart00072 68 FLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRL 147 (184)
T ss_pred eEEEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35666778899999999999999999999999999999999999999999999999998877 66667777777777777
Q ss_pred hhcccccc--ceeeEEEec
Q psy9829 80 SRVLFPVG--STFVGSVLG 96 (333)
Q Consensus 80 er~~qE~G--~~~g~~i~g 96 (333)
+++..+.. ..|.+.|..
T Consensus 148 ~~a~~~~~~~~~fd~~I~n 166 (184)
T smart00072 148 AAAQKEAQEYHLFDYVIVN 166 (184)
T ss_pred HHHHHHHhhhccCCEEEEC
Confidence 66655442 235555553
No 8
>KOG3580|consensus
Probab=99.21 E-value=1.2e-11 Score=126.60 Aligned_cols=91 Identities=35% Similarity=0.730 Sum_probs=81.5
Q ss_pred cCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCc----chhhHHHHH
Q psy9829 4 ESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK----YHTNLARQR 79 (333)
Q Consensus 4 ~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~E----s~~ki~~ra 79 (333)
+.+++++.+++++++||+|+||.||++|||.|+||++|++.|+||||||+.|.|+..++.||.++.. +..++++++
T Consensus 665 dag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~a 744 (1027)
T KOG3580|consen 665 DAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQA 744 (1027)
T ss_pred cCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999998765 468888888
Q ss_pred hhccccccceeeEEE
Q psy9829 80 SRVLFPVGSTFVGSV 94 (333)
Q Consensus 80 er~~qE~G~~~g~~i 94 (333)
.+....-.+-|...|
T Consensus 745 ~KL~K~~~HLFTaTI 759 (1027)
T KOG3580|consen 745 NKLKKTCAHLFTATI 759 (1027)
T ss_pred HHHhhhchhheEeee
Confidence 887776666776655
No 9
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.17 E-value=4.3e-11 Score=92.82 Aligned_cols=57 Identities=30% Similarity=0.492 Sum_probs=54.7
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 280 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~ 280 (333)
.++||++|.++ ++|+++| |++||+|++|||+++.++++++++.+|+.+.+.|+|+|+
T Consensus 25 ~~~~V~~v~~~---~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPG---SPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTT---SHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCEEEEEEeCC---ChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 37999999999 9999999 999999999999999999999999999999999999984
No 10
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.88 E-value=1.6e-09 Score=97.68 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCcccccccccccccc-EEEEEecCchhhHH-hhhcCCCcchhhHHHH
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYP-IVIFLRAETKSNVK-ELRAGIPKYHTNLARQ 78 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~P-ivIfIkp~s~~~lk-~lr~~~~Es~~ki~~r 78 (333)
++|-+.+.+.+++|+.++|++++++|++||||+++++++.|+.....+ ++|||.|||.+.++ +++.|..++.+.+..|
T Consensus 69 f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~R 148 (186)
T PRK14737 69 FLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKR 148 (186)
T ss_pred eEEEEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 356677889999999999999999999999999999999998753222 89999999988766 6777776666667777
Q ss_pred Hhhcccc--ccceeeEEEe
Q psy9829 79 RSRVLFP--VGSTFVGSVL 95 (333)
Q Consensus 79 aer~~qE--~G~~~g~~i~ 95 (333)
.++...| ...-|.+.|.
T Consensus 149 l~~~~~e~~~~~~~D~vI~ 167 (186)
T PRK14737 149 IENGIIELDEANEFDYKII 167 (186)
T ss_pred HHHHHHHHhhhccCCEEEE
Confidence 6655433 3444555444
No 11
>KOG3550|consensus
Probab=98.83 E-value=6.9e-09 Score=90.96 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=56.0
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
++|||++|.|| |.|.+.|.|+.||.+|++||.+.++--|+.|+.+|+...+.|.|+|
T Consensus 115 spiyisriipg---gvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvv 171 (207)
T KOG3550|consen 115 SPIYISRIIPG---GVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVV 171 (207)
T ss_pred CceEEEeecCC---ccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEE
Confidence 68999999999 9999999999999999999999999999999999999999999998
No 12
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.79 E-value=1.2e-07 Score=95.32 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=95.8
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccC------
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNY------ 177 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~------ 177 (333)
+.+++|+.|.|||. |+.. +|++||+ +.+|+..+........++.. .+..+.+.|.|.....
T Consensus 256 ~~Gv~V~~V~~~sp---------A~~a-GL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l 325 (428)
T TIGR02037 256 QRGALVAQVLPGSP---------AEKA-GLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTL 325 (428)
T ss_pred CCceEEEEccCCCC---------hHHc-CCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence 47899999999764 4543 4799999 58999998877544444543 4667888888722110
Q ss_pred -CCCCCCCCCCCCCceeEEeeecCCCcccccc-----ceeeccccccc-CeEEEEEEccCcccCccccCCCCCCCCEEEE
Q psy9829 178 -DQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ-----VFRIDFGIILG-NKIFVKEVTHRLDNNASAGTHQLAEGDVLLK 250 (333)
Q Consensus 178 -~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~-----~~~~d~G~~l~-~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ 250 (333)
..|.... . .. ...+|... .....+++... .+++|.+|.++ ++|++.| |++||+|++
T Consensus 326 ~~~~~~~~--~------~~-----~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~---SpA~~aG-L~~GDvI~~ 388 (428)
T TIGR02037 326 GASPEEQA--S------SS-----NPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSG---SPAARAG-LQPGDVILS 388 (428)
T ss_pred CcCCCccc--c------cc-----ccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCC---CHHHHcC-CCCCCEEEE
Confidence 0010000 0 00 00001000 01122333221 47999999999 7777654 999999999
Q ss_pred eCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCC
Q psy9829 251 INNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVP 284 (333)
Q Consensus 251 ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~ 284 (333)
|||+.+. +.++..++|+.. .+.+.|.|.|+..
T Consensus 389 Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 389 VNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred ECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 9999876 567888888864 5789999999753
No 13
>PLN02772 guanylate kinase
Probab=98.79 E-value=6e-09 Score=104.07 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=76.4
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR 79 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra 79 (333)
++|..++.+++++|+.++|+.++++|++||||+++++++.|+...+.|++|||.||+.+.|+ +++.|.+++.+.+.+|.
T Consensus 201 FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL 280 (398)
T PLN02772 201 FLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRL 280 (398)
T ss_pred cceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 46778889999999999999999999999999999999999998889999999999999887 88888888888888888
Q ss_pred hhccccc
Q psy9829 80 SRVLFPV 86 (333)
Q Consensus 80 er~~qE~ 86 (333)
.+...|.
T Consensus 281 ~~A~~Ei 287 (398)
T PLN02772 281 RNAEAEL 287 (398)
T ss_pred HHHHHHH
Confidence 7665443
No 14
>KOG3550|consensus
Probab=98.72 E-value=2.4e-08 Score=87.62 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=60.6
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g 163 (333)
..||||.|-||+.. ..-||||+|||||+| |.-++|+-||. |.||+++|.|-. .+|+.|+++.
T Consensus 100 deglgfnvmggkeq------nspiyisriipggva---------drhgglkrgdqllsvngvsvege~hekavellkaa~ 164 (207)
T KOG3550|consen 100 DEGLGFNVMGGKEQ------NSPIYISRIIPGGVA---------DRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV 164 (207)
T ss_pred ccccceeeccCccc------CCceEEEeecCCccc---------cccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence 67999999999864 345999999999876 66677899999 789999998874 6789999999
Q ss_pred CceEEEEEE
Q psy9829 164 NCISAQIKR 172 (333)
Q Consensus 164 ~~v~L~v~R 172 (333)
.+|.|+||=
T Consensus 165 gsvklvvry 173 (207)
T KOG3550|consen 165 GSVKLVVRY 173 (207)
T ss_pred CcEEEEEec
Confidence 999999853
No 15
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=3.6e-08 Score=89.41 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCCcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHH
Q psy9829 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQR 79 (333)
Q Consensus 1 ~~~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~ra 79 (333)
++|-.+.-.++++|+...|++.+.+|+.|||||+.|+.++++..--.-+.|||.|||.+.|+ ++++|.+++.+.+..|.
T Consensus 68 fLE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl 147 (191)
T COG0194 68 FLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRL 147 (191)
T ss_pred cEEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence 34556677799999999999999999999999999999999987667889999999999988 99999999999999998
Q ss_pred hhccccc
Q psy9829 80 SRVLFPV 86 (333)
Q Consensus 80 er~~qE~ 86 (333)
+++..|.
T Consensus 148 ~~a~~Ei 154 (191)
T COG0194 148 ENAKKEI 154 (191)
T ss_pred HHHHHHH
Confidence 8776665
No 16
>KOG1892|consensus
Probab=98.58 E-value=1.8e-07 Score=100.22 Aligned_cols=60 Identities=27% Similarity=0.446 Sum_probs=57.9
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
.|||||+|.+| |+|+.||||+.||.+|+|||++|-++|.|.|..++-.++..|+|-|.+.
T Consensus 960 lGIYvKsVV~G---gaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 960 LGIYVKSVVEG---GAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred cceEEEEeccC---CccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence 37999999999 9999999999999999999999999999999999999999999999885
No 17
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.57 E-value=7.6e-08 Score=74.53 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=59.4
Q ss_pred ccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc
Q psy9829 86 VGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA 162 (333)
Q Consensus 86 ~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~ 162 (333)
.+.+|||.+.++.++. +.++||++|.|||+| +..+ |++||+ +.+|+.++.+++ .++++++.+
T Consensus 8 ~~~~lG~~l~~~~~~~-----~~~~~V~~v~~~~~a---------~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~ 72 (81)
T PF00595_consen 8 GNGPLGFTLRGGSDND-----EKGVFVSSVVPGSPA---------ERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA 72 (81)
T ss_dssp TTSBSSEEEEEESTSS-----SEEEEEEEECTTSHH---------HHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred CCCCcCEEEEecCCCC-----cCCEEEEEEeCCChH---------Hhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence 5679999999998887 589999999997754 4443 699999 689999999996 556788888
Q ss_pred CCceEEEEE
Q psy9829 163 HNCISAQIK 171 (333)
Q Consensus 163 g~~v~L~v~ 171 (333)
++.++|+|+
T Consensus 73 ~~~v~L~V~ 81 (81)
T PF00595_consen 73 SNPVTLTVQ 81 (81)
T ss_dssp TSEEEEEEE
T ss_pred CCcEEEEEC
Confidence 889999874
No 18
>PRK10942 serine endoprotease; Provisional
Probab=98.51 E-value=2.2e-06 Score=87.81 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=93.3
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccCCCCCCC
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNYDQPEKG 183 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~~~p~~~ 183 (333)
..|++|+.|.||| ||+. .+||+||+ +.+|+..+.+...-..++.. .+..+.|.|.|......-.-.
T Consensus 310 ~~GvlV~~V~~~S---------pA~~-AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~- 378 (473)
T PRK10942 310 QRGAFVSQVLPNS---------SAAK-AGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE- 378 (473)
T ss_pred CCceEEEEECCCC---------hHHH-cCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE-
Confidence 4699999999976 4453 45899999 58999998887544445543 356688888773211000000
Q ss_pred CCCCCCCceeEEeeecCCCcccccc-ceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHH
Q psy9829 184 EMSFRKGDVFHVIDTLHNGVVGSWQ-VFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK 262 (333)
Q Consensus 184 ~l~~~~g~~~hv~~sl~~~~lG~~~-~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~ 262 (333)
+...... ....... .+|... ....+. ...++.|.++.++ ++|++- .|++||+|++|||+...+ .+
T Consensus 379 -l~~~~~~--~~~~~~~--~lGl~g~~l~~~~---~~~gvvV~~V~~~---S~A~~a-GL~~GDvIv~VNg~~V~s--~~ 444 (473)
T PRK10942 379 -LQQSSQN--QVDSSNI--FNGIEGAELSNKG---GDKGVVVDNVKPG---TPAAQI-GLKKGDVIIGANQQPVKN--IA 444 (473)
T ss_pred -eCcCccc--ccccccc--cccceeeeccccc---CCCCeEEEEeCCC---ChHHHc-CCCCCCEEEEECCEEcCC--HH
Confidence 0000000 0000000 001000 000000 0136899999999 777655 599999999999987765 68
Q ss_pred HHHHHHHhcCCceEEEEeccCC
Q psy9829 263 EARKLIDSSKEKLSLTIRREVP 284 (333)
Q Consensus 263 eA~~~l~~s~~~v~L~V~R~~~ 284 (333)
|..++++.....+.|.|.|+..
T Consensus 445 dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 445 ELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred HHHHHHHhCCCeEEEEEEECCE
Confidence 8888888877889999988753
No 19
>PRK10139 serine endoprotease; Provisional
Probab=98.49 E-value=2.3e-06 Score=87.25 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=92.2
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEeeccC------
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTHFNY------ 177 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~~~~------ 177 (333)
+.|++|+.|.|||. |+. .+||+||+ +.+|+..++.......++.. .+..+.+.|.|.....
T Consensus 289 ~~Gv~V~~V~~~Sp---------A~~-AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~ 358 (455)
T PRK10139 289 QRGAFVSEVLPNSG---------SAK-AGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL 358 (455)
T ss_pred CCceEEEEECCCCh---------HHH-CCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence 46999999999774 443 45799999 58999998887544445543 4567888887732110
Q ss_pred -CCCCC--CCCCCCCCceeEEeeecCCCccccccceeeccccc-ccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCC
Q psy9829 178 -DQPEK--GEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGII-LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINN 253 (333)
Q Consensus 178 -~~p~~--~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~-l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING 253 (333)
..+.. ...++ .+ ...|... ..+ -+. ...+++|.+|.++ ++|++- .|++||+|++|||
T Consensus 359 ~~~~~~~~~~~~~-------~~-----~~~g~~l--~~~-~~~~~~~Gv~V~~V~~~---spA~~a-GL~~GD~I~~Ing 419 (455)
T PRK10139 359 DTSTSSSASAEMI-------TP-----ALQGATL--SDG-QLKDGTKGIKIDEVVKG---SPAAQA-GLQKDDVIIGVNR 419 (455)
T ss_pred CCCCCcccccccc-------cc-----cccccEe--ccc-ccccCCCceEEEEeCCC---ChHHHc-CCCCCCEEEEECC
Confidence 00000 00000 00 0000000 000 000 0136899999999 777654 5999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829 254 HPTDGMSVKEARKLIDSSKEKLSLTIRREVP 284 (333)
Q Consensus 254 ~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~ 284 (333)
+... +.++...+|+.....+.|.|.|+..
T Consensus 420 ~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 420 DRVN--SIAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred EEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 8765 4677778887767789999998753
No 20
>KOG0707|consensus
Probab=98.49 E-value=1.4e-07 Score=87.83 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=77.2
Q ss_pred CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829 3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR 81 (333)
Q Consensus 3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer 81 (333)
|...+..+.++|++++|++++..||.|+|||..|.+..++...+.++.||++||+.+.+. +++.+.+|....+.+|...
T Consensus 105 E~a~~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~s 184 (231)
T KOG0707|consen 105 EFATFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKS 184 (231)
T ss_pred hhhhhhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHh
Confidence 555677889999999999999999999999999999999999999999999999977655 8999999999999998886
Q ss_pred ccccccce
Q psy9829 82 VLFPVGST 89 (333)
Q Consensus 82 ~~qE~G~~ 89 (333)
++.|+...
T Consensus 185 a~~e~~~~ 192 (231)
T KOG0707|consen 185 AEEEFEIL 192 (231)
T ss_pred hhhhhccc
Confidence 66666543
No 21
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.48 E-value=5.1e-07 Score=69.01 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=54.1
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
.++||..|.++ ++|++.| |++||+|++|||+.+.++++.+...+++.+.+.+.|++.|+
T Consensus 26 ~~~~i~~v~~~---s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 26 GGVVVSSVVPG---SPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCEEEEEECCC---CHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 36999999999 8888877 99999999999999999999999999999888999999875
No 22
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.45 E-value=6.7e-07 Score=68.46 Aligned_cols=56 Identities=29% Similarity=0.491 Sum_probs=50.3
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
.+++|++|.++ ++|++ ..|++||+|++|||..+.++++.++.++|+.....+.|++
T Consensus 26 ~~~~V~~v~~~---s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPG---GPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCeEEEEECCC---ChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 36999999999 77666 6799999999999999999999999999999888888876
No 23
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.31 E-value=2.2e-06 Score=63.99 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=49.6
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEE
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTI 279 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V 279 (333)
+++|.++.++ ++|+. +.|++||+|++|||.+..+++++++.++|+.+. +.+.|+|
T Consensus 14 ~~~V~~v~~~---s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 14 GVVVLSVEPG---SPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CEEEEEeCCC---CHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 6999999999 77765 579999999999999999999999999999987 6788876
No 24
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.13 E-value=1.6e-05 Score=80.25 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=89.5
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEEeeccCCCCCCCCC
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEM 185 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R~~~~~~~p~~~~l 185 (333)
..+.+|++|.|+|. |+. .+|++||+ +.+|+..+.+..+.++.+......+.+.+.|.+...
T Consensus 127 ~~g~~V~~V~~~Sp---------A~~-AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~-------- 188 (420)
T TIGR00054 127 EVGPVIELLDKNSI---------ALE-AGIEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENW-------- 188 (420)
T ss_pred CCCceeeccCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCce--------
Confidence 35678999999764 454 46899999 589999988876555655443356777777743211
Q ss_pred CCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHH
Q psy9829 186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEAR 265 (333)
Q Consensus 186 ~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~ 265 (333)
.+.-++ +... ...+ .+..|.++.++ ++|++. .|++||+|++|||+... +.+|..
T Consensus 189 --------~l~v~l-----~~~~-~~~~------~g~vV~~V~~~---SpA~~a-GL~~GD~Iv~Vng~~V~--s~~dl~ 242 (420)
T TIGR00054 189 --------TFEVMK-----ELIP-RGPK------IEPVLSDVTPN---SPAEKA-GLKEGDYIQSINGEKLR--SWTDFV 242 (420)
T ss_pred --------Eecccc-----ccee-cCCC------cCcEEEEECCC---CHHHHc-CCCCCCEEEEECCEECC--CHHHHH
Confidence 000000 0000 0001 24779999999 666544 59999999999998875 467888
Q ss_pred HHHHhc-CCceEEEEeccCC
Q psy9829 266 KLIDSS-KEKLSLTIRREVP 284 (333)
Q Consensus 266 ~~l~~s-~~~v~L~V~R~~~ 284 (333)
+.++.. .+.+.+.|.|+..
T Consensus 243 ~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 243 SAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred HHHHhCCCCceEEEEEECCE
Confidence 888764 4568999998763
No 25
>KOG3571|consensus
Probab=98.09 E-value=5.6e-06 Score=84.23 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=57.0
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC---CceEEEEeccCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK---EKLSLTIRREVPR 285 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~---~~v~L~V~R~~~~ 285 (333)
++|||.+|.+| |+-|.|||+.+||.||.||-++.+|||-.||++.|+..- .-+.|+|++-|-+
T Consensus 277 ggIYVgsImkg---GAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 277 GGIYVGSIMKG---GAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDP 342 (626)
T ss_pred CceEEeeeccC---ceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCC
Confidence 58999999999 999999999999999999999999999999999998743 3489999887653
No 26
>KOG3553|consensus
Probab=98.06 E-value=8.2e-07 Score=73.06 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPT 287 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~~ 287 (333)
.||||+++.+| ++|+.. .|+.+|+||.+||-+..=|||..|++.|+. .+.|++.|+|..-+++
T Consensus 59 ~GiYvT~V~eG---sPA~~A-GLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~~l~~~ 121 (124)
T KOG3553|consen 59 KGIYVTRVSEG---SPAEIA-GLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQSLQKA 121 (124)
T ss_pred ccEEEEEeccC---Chhhhh-cceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhhccchh
Confidence 57999999999 666655 499999999999998888999999999998 6788888888765544
No 27
>KOG3551|consensus
Probab=98.04 E-value=3.6e-06 Score=83.38 Aligned_cols=73 Identities=14% Similarity=0.032 Sum_probs=61.1
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g 163 (333)
+.||||+|-||++|-- -|.||||-||=+ ||....|.+||. |.||+.|+...+ +||+|||.+|
T Consensus 95 ~gGLGISIKGGreNkM------PIlISKIFkGlA---------ADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraG 159 (506)
T KOG3551|consen 95 AGGLGISIKGGRENKM------PILISKIFKGLA---------ADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAG 159 (506)
T ss_pred CCcceEEeecCcccCC------ceehhHhccccc---------cccccceeeccEEEEecchhhhhcchHHHHHHHHhhC
Confidence 5599999999999854 389999999754 566666799999 589999998886 8899999999
Q ss_pred CceEEEEEEee
Q psy9829 164 NCISAQIKRTH 174 (333)
Q Consensus 164 ~~v~L~v~R~~ 174 (333)
+.|-|.||=.+
T Consensus 160 keV~levKy~R 170 (506)
T KOG3551|consen 160 KEVLLEVKYMR 170 (506)
T ss_pred ceeeeeeeeeh
Confidence 99998886433
No 28
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.03 E-value=4.5e-05 Score=77.57 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=85.0
Q ss_pred EeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhh--hhhhcCCceEEEEEEeeccCCCCCCCCCCC
Q psy9829 111 KPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQ--VFRIAHNCISAQIKRTHFNYDQPEKGEMSF 187 (333)
Q Consensus 111 ~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~--alr~~g~~v~L~v~R~~~~~~~p~~~~l~~ 187 (333)
.|+.|.|||. |+. .+||+||+ +.+|+..+++..+-.. +.+..+..+++.|.|.......... +..
T Consensus 129 lV~~V~~~Sp---------A~k-AGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~--l~~ 196 (449)
T PRK10779 129 VVGEIAPNSI---------AAQ-AQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKT--LDL 196 (449)
T ss_pred cccccCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEE--ecc
Confidence 6899999764 454 46899999 5899998887743222 2233455688888873211100000 000
Q ss_pred CCCceeEEeeecCCCccccccceeecccccc---cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHH
Q psy9829 188 RKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEA 264 (333)
Q Consensus 188 ~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l---~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA 264 (333)
.... .. . .........|+.- ..+..|.+|.++ ++|++- .|++||+|++|||+... +.+|.
T Consensus 197 ~~~~-~~-~---------~~~~~~~~lGl~~~~~~~~~vV~~V~~~---SpA~~A-GL~~GDvIl~Ing~~V~--s~~dl 259 (449)
T PRK10779 197 RHWA-FE-P---------DKQDPVSSLGIRPRGPQIEPVLAEVQPN---SAASKA-GLQAGDRIVKVDGQPLT--QWQTF 259 (449)
T ss_pred cccc-cC-c---------cccchhhcccccccCCCcCcEEEeeCCC---CHHHHc-CCCCCCEEEEECCEEcC--CHHHH
Confidence 0000 00 0 0000000111110 013679999999 666553 59999999999998765 56677
Q ss_pred HHHHHh-cCCceEEEEeccCC
Q psy9829 265 RKLIDS-SKEKLSLTIRREVP 284 (333)
Q Consensus 265 ~~~l~~-s~~~v~L~V~R~~~ 284 (333)
.+.++. ..+.+.|+|.|+..
T Consensus 260 ~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 260 VTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred HHHHHhCCCCEEEEEEEECCE
Confidence 777766 34578999999864
No 29
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.98 E-value=7.5e-06 Score=74.61 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=64.0
Q ss_pred CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829 3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR 81 (333)
Q Consensus 3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer 81 (333)
|..++...+++|+.++|++++++|++||||++.++++.|+......++||+.||+.+.++ +++.|..++...+..|...
T Consensus 80 e~~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~ 159 (206)
T PRK14738 80 EWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLAT 159 (206)
T ss_pred EEEEEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445566788999999999999999999999999999999865545588999999987654 7777776655556566554
Q ss_pred cc
Q psy9829 82 VL 83 (333)
Q Consensus 82 ~~ 83 (333)
..
T Consensus 160 ~~ 161 (206)
T PRK14738 160 AP 161 (206)
T ss_pred HH
Confidence 43
No 30
>KOG3605|consensus
Probab=97.95 E-value=6.2e-06 Score=85.97 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=100.7
Q ss_pred cceeeEEEec-ccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc-hhhh-hhhhc
Q psy9829 87 GSTFVGSVLG-ARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV-GSWQ-VFRIA 162 (333)
Q Consensus 87 G~~~g~~i~g-g~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~-~a~~-alr~~ 162 (333)
|..||.+|.. |-|.-. |-++|...-. .|||...+.|-+||+ |.+|++++.|.. .+.| .+|..
T Consensus 656 GEiLGVViVESGWGSmL-----PTVViAnmm~---------~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 656 GEILGVVIVESGWGSIL-----PTVVIANMMH---------GGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred CceeeEEEEecCccccc-----hHHHHHhccc---------CChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 8999999883 333322 3444555555 567777888899999 699999999985 2233 44442
Q ss_pred --CCceEEEEEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCC
Q psy9829 163 --HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTH 240 (333)
Q Consensus 163 --g~~v~L~v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg 240 (333)
+..|.|.|-++- +.-.. .++-|+ .+...|+.+-+|| |=.+.-| |.|.|.
T Consensus 722 KnQT~VkltiV~cp------PV~~V------~I~RPd------------~kyQLGFSVQNGi-ICSLlRG---GIAERG- 772 (829)
T KOG3605|consen 722 KNQTAVKLNIVSCP------PVTTV------LIRRPD------------LRYQLGFSVQNGI-ICSLLRG---GIAERG- 772 (829)
T ss_pred cccceEEEEEecCC------CceEE------Eeeccc------------chhhccceeeCcE-eehhhcc---cchhcc-
Confidence 334555553311 11000 011111 2345666666677 5667777 887765
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
.+++|-||++|||++.-.+-|+.-+++|-.+-..++++-
T Consensus 773 GVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT 811 (829)
T KOG3605|consen 773 GVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT 811 (829)
T ss_pred CceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence 599999999999999999999999999999888877753
No 31
>KOG3549|consensus
Probab=97.84 E-value=6.1e-05 Score=74.02 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=54.8
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 280 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~ 280 (333)
+|-|++|... .+|...|.|=+||-||.|||+.....+|+|++++|++.++.|+|+|.
T Consensus 81 PvviSkI~kd---QaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 81 PVVISKIYKD---QAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred cEEeehhhhh---hhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 6889999998 99999999999999999999999999999999999999999999984
No 32
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.74 E-value=7.3e-05 Score=58.13 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=47.3
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 284 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~ 284 (333)
.+++|.++.++ ++|++-| |++||+|++|||+.. -+.++....|.. ..+++.|+|.|+..
T Consensus 14 ~g~~V~~V~~~---spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 14 GGVVVVSVIPG---SPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp SSEEEEEESTT---SHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred CeEEEEEeCCC---CcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 47999999999 8888776 999999999999888 445676777743 45689999999754
No 33
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.71 E-value=0.00014 Score=56.20 Aligned_cols=59 Identities=25% Similarity=0.539 Sum_probs=50.6
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEecc
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRRE 282 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~ 282 (333)
.+++|..|.++ ++|++. .|++||+|++|||....+.++.+...+++. ..+.+.|.+.|+
T Consensus 13 ~~~~V~~v~~~---s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 13 GGLVITSVLPG---SPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CeEEEEEecCC---CCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 46899999999 777665 699999999999999999889999988875 356789999886
No 34
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.69 E-value=2.1e-05 Score=67.41 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=49.6
Q ss_pred CcCCCCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecC
Q psy9829 3 EESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAE 56 (333)
Q Consensus 3 ~~~~~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~ 56 (333)
|.+.+.++.+.+..++|++++++|+.||||++++++++|+.....|++|||.||
T Consensus 67 e~~~~~~~~yg~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 67 EWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred EEEEEcCEEecCcHHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 445566778889999999999999999999999999999999999999999998
No 35
>KOG3571|consensus
Probab=97.65 E-value=7.7e-05 Score=76.15 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=58.5
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhc-
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIA- 162 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~- 162 (333)
-..||++|+|=.++- +|.||||.+|-||||- ++||+ +-+||+ +.||++...+++ .||.+||.+
T Consensus 260 vnfLGiSivgqsn~r----gDggIYVgsImkgGAV-------A~DGR--Ie~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 260 VNFLGISIVGQSNAR----GDGGIYVGSIMKGGAV-------ALDGR--IEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred cccceeEeecccCcC----CCCceEEeeeccCcee-------eccCc--cCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 447999999977764 5899999999999876 56665 599999 589999999996 889999874
Q ss_pred --CCceEEEEEE
Q psy9829 163 --HNCISAQIKR 172 (333)
Q Consensus 163 --g~~v~L~v~R 172 (333)
+.-+.|+|-.
T Consensus 327 ~~~gPi~ltvAk 338 (626)
T KOG3571|consen 327 SRPGPIKLTVAK 338 (626)
T ss_pred ccCCCeEEEEee
Confidence 2227777754
No 36
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.65 E-value=6.2e-05 Score=66.01 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhhc
Q psy9829 7 SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSRV 82 (333)
Q Consensus 7 ~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer~ 82 (333)
.....+.++.++|++++++|+.||||++..+++.++..-..|+.||+-|++.+.++ +++.|..++.+.+..+.+..
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~ 148 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKA 148 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34556788899999999999999999999999999988778899999999877766 67777766555566655443
No 37
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=97.63 E-value=0.00014 Score=54.16 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=47.9
Q ss_pred eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC-C
Q psy9829 89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH-N 164 (333)
Q Consensus 89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g-~ 164 (333)
+|||.+.++.+ .+++|++|.+|| ||+. ..|++||. +.+|+..+++. ....+.++... .
T Consensus 2 ~~G~~~~~~~~--------~~~~V~~v~~~s---------~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~ 63 (70)
T cd00136 2 GLGFSIRGGTE--------GGVVVLSVEPGS---------PAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGE 63 (70)
T ss_pred CccEEEecCCC--------CCEEEEEeCCCC---------HHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCC
Confidence 68888886544 689999999966 4454 45799999 68999999998 45556666543 5
Q ss_pred ceEEEE
Q psy9829 165 CISAQI 170 (333)
Q Consensus 165 ~v~L~v 170 (333)
.++|.+
T Consensus 64 ~v~l~v 69 (70)
T cd00136 64 KVTLTV 69 (70)
T ss_pred eEEEEE
Confidence 677765
No 38
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.62 E-value=0.00026 Score=54.82 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=47.2
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~ 283 (333)
.|+.|.++.++ ++|++. .|++||+|++|||+... +.++...+|... .+.+.|++.|+.
T Consensus 10 ~Gv~V~~V~~~---spa~~a-GL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVG---SPAENA-VLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCC---ChHHhc-CCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 46899999999 666543 69999999999998877 567888888764 567899998865
No 39
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.62 E-value=0.00026 Score=54.48 Aligned_cols=56 Identities=25% Similarity=0.488 Sum_probs=45.2
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~ 283 (333)
|+.|.++.++ ++|+. + |++||+|++|||.... +.++...+|.. ..+.+.|.+.|+.
T Consensus 9 Gv~V~~V~~~---s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 9 GVYVTSVVEG---MPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred CEEEEEECCC---Cchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 6889999999 77764 5 9999999999998766 46677777764 3567899998865
No 40
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=97.61 E-value=0.00017 Score=54.97 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=50.8
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~~g 163 (333)
..+|||.+.++.+. ..+++|++|.+||.| +. .+|++||+ +.+|+..+++. .....+++...
T Consensus 11 ~~~~G~~~~~~~~~------~~~~~V~~v~~~s~a---------~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~ 74 (82)
T cd00992 11 GGGLGFSLRGGKDS------GGGIFVSRVEPGGPA---------ER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSG 74 (82)
T ss_pred CCCcCEEEeCcccC------CCCeEEEEECCCChH---------Hh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence 56899999876544 468999999997754 44 45799999 69999999854 35556667666
Q ss_pred CceEEEE
Q psy9829 164 NCISAQI 170 (333)
Q Consensus 164 ~~v~L~v 170 (333)
..++|.+
T Consensus 75 ~~v~l~v 81 (82)
T cd00992 75 DEVTLTV 81 (82)
T ss_pred CeEEEEE
Confidence 6777765
No 41
>KOG3552|consensus
Probab=97.61 E-value=9.2e-05 Score=79.91 Aligned_cols=64 Identities=25% Similarity=0.471 Sum_probs=59.0
Q ss_pred ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
||++-|-++.|..|++| |.+ .|.|++||+||+|||.+.....-+.+..+++.|++.|.|+|.+.
T Consensus 69 FgfvagrPviVr~VT~G---Gps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 69 FGFVAGRPVIVRFVTEG---GPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred ceeecCCceEEEEecCC---CCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 56666678999999999 887 48999999999999999999999999999999999999999886
No 42
>KOG3553|consensus
Probab=97.56 E-value=0.00011 Score=60.71 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=52.2
Q ss_pred ceeeEEEecccCCC----CCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhhc
Q psy9829 88 STFVGSVLGARGAL----DLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRIA 162 (333)
Q Consensus 88 ~~~g~~i~gg~d~p----~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~~ 162 (333)
--+||.|-||.|.- +|.--|.|||||.|..|| ||+- .+||.+|.| .||+-|.+=|+ +.+|.+-.
T Consensus 35 l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGs---------PA~~-AGLrihDKIlQvNG~DfTMvT-Hd~Avk~i 103 (124)
T KOG3553|consen 35 LILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGS---------PAEI-AGLRIHDKILQVNGWDFTMVT-HDQAVKRI 103 (124)
T ss_pred EEEEEEeccccCCCcccCCCCcCCccEEEEEeccCC---------hhhh-hcceecceEEEecCceeEEEE-hHHHHHHh
Confidence 46899999999973 455569999999999987 5555 458999995 78888877665 33555432
Q ss_pred --CCceEEEEEE
Q psy9829 163 --HNCISAQIKR 172 (333)
Q Consensus 163 --g~~v~L~v~R 172 (333)
.+.++|.|-|
T Consensus 104 ~k~~vl~mLVaR 115 (124)
T KOG3553|consen 104 TKEEVLRMLVAR 115 (124)
T ss_pred hHhHHHHHHHHh
Confidence 2234454444
No 43
>KOG3551|consensus
Probab=97.54 E-value=6.7e-05 Score=74.55 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=55.0
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE--eccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI--RREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V--~R~~ 283 (333)
-+|.|++|.+| =+|.+.+-|..||-||++||.++...||+||++.||..+..|-|.| .|+.
T Consensus 110 MPIlISKIFkG---lAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy~REv 172 (506)
T KOG3551|consen 110 MPILISKIFKG---LAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKYMREV 172 (506)
T ss_pred CceehhHhccc---cccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeeeehhc
Confidence 47999999999 8888889999999999999999999999999999999998876654 6665
No 44
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.51 E-value=0.00032 Score=53.24 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=45.9
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc-CCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-KEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s-~~~v~L~V~R~~ 283 (333)
++.|.++.++ ++|++. .|++||+|++|||+... +.++...+|... .+.+.+++.|+.
T Consensus 13 ~~~V~~v~~~---s~a~~~-gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPG---SPAAKA-GLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCC---CHHHHc-CCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 4789999998 777654 49999999999999877 457787888765 568899998865
No 45
>KOG3651|consensus
Probab=97.49 E-value=0.00021 Score=69.18 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=55.0
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEec
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R 281 (333)
-+||-.|.++ .+|++||+++-||-|++|||++..+.|..|..++|+-+.+.|.+..-+
T Consensus 31 ClYiVQvFD~---tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNK 88 (429)
T KOG3651|consen 31 CLYIVQVFDK---TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNK 88 (429)
T ss_pred eEEEEEeccC---CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehh
Confidence 3899999999 999999999999999999999999999999999999999999988755
No 46
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.45 E-value=0.00061 Score=52.80 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=45.6
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~ 283 (333)
.+++|.+|.++ ++|++. .|++||+|++|||....+. .+..+++... ...+.|.+.|+.
T Consensus 24 ~g~~V~~v~~~---s~a~~~-gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPG---SPAAKA-GLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCC---CHHHHc-CCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 47999999999 776654 5999999999999887654 4556666654 678899998865
No 47
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=97.29 E-value=0.00091 Score=50.85 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=48.4
Q ss_pred ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchh--hhhhhhcCC
Q psy9829 88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGS--WQVFRIAHN 164 (333)
Q Consensus 88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a--~~alr~~g~ 164 (333)
..|||.+..+... +.+++|+.|.+||.| ... +|++||+ +.+|+..+.+.... ...++..+.
T Consensus 12 ~~~G~~~~~~~~~------~~~~~i~~v~~~s~a---------~~~-gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~ 75 (85)
T smart00228 12 GGLGFSLVGGKDE------GGGVVVSSVVPGSPA---------AKA-GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG 75 (85)
T ss_pred CcccEEEECCCCC------CCCEEEEEECCCCHH---------HHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 5788888754322 268999999997643 443 3799999 69999999877432 233344555
Q ss_pred ceEEEEEE
Q psy9829 165 CISAQIKR 172 (333)
Q Consensus 165 ~v~L~v~R 172 (333)
.++|.+.|
T Consensus 76 ~~~l~i~r 83 (85)
T smart00228 76 KVTLTVLR 83 (85)
T ss_pred eEEEEEEe
Confidence 78888876
No 48
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.23 E-value=0.00073 Score=51.59 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=40.9
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~ 283 (333)
++.|.+|.++ ++|+.- .|++||+|++|||+...+ ..++.+.+ ...+.+.|.+.|+.
T Consensus 13 ~~~V~~V~~~---s~a~~a-Gl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 13 LGKVTFVRDD---SPADKA-GLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred cEEEEEECCC---ChHHHh-CCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 5889999999 766554 499999999999987655 33332222 24568899988864
No 49
>KOG3606|consensus
Probab=97.18 E-value=0.0019 Score=61.94 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=57.0
Q ss_pred cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
..|+.-..||||+++.|| |+|.-.|=|.++|-||++||+-..+.|+.+.-.++-+-...|-++|
T Consensus 187 p~GlekvpGIFISRlVpG---GLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTV 250 (358)
T KOG3606|consen 187 PHGLEKVPGIFISRLVPG---GLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITV 250 (358)
T ss_pred cccccccCceEEEeecCC---ccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEe
Confidence 345544568999999999 9999999999999999999999999999999999988888888877
No 50
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.14 E-value=0.00074 Score=68.23 Aligned_cols=59 Identities=32% Similarity=0.454 Sum_probs=54.2
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEecc
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRRE 282 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~ 282 (333)
.++.|.+..++ ++|++-| |++||+|+.|||.++.+|+..||++.|+.... .|+|++.|.
T Consensus 112 ~~~~V~s~~~~---~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 112 GGVKVVSPIDG---SPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCcEEEecCCC---ChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 36889999999 9999999 99999999999999999999999999998664 799999996
No 51
>KOG0609|consensus
Probab=97.12 E-value=0.00059 Score=70.29 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=55.1
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 280 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~ 280 (333)
.+||-+|..| |+|.+.|.|++||.|++|||++..+.++.|.+.+|+.+...++|+|.
T Consensus 147 ~~~vARI~~G---G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkii 203 (542)
T KOG0609|consen 147 KVVVARIMHG---GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKII 203 (542)
T ss_pred ccEEeeeccC---CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEc
Confidence 5999999999 99999999999999999999999999999999999999999999983
No 52
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.08 E-value=0.00079 Score=60.31 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHH-hhhcCCCcchhhHHHHHhh
Q psy9829 10 CSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVK-ELRAGIPKYHTNLARQRSR 81 (333)
Q Consensus 10 ~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk-~lr~~~~Es~~ki~~raer 81 (333)
+.+.++.++|+.++++|+.||+|++++++..|......+++||+-|++.+.++ ++..|...+.+.+..+...
T Consensus 79 ~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~ 151 (205)
T PRK00300 79 NYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAK 151 (205)
T ss_pred ccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45667889999999999999999999999998887778899999999876665 6666655555555555443
No 53
>KOG3549|consensus
Probab=97.03 E-value=0.00072 Score=66.69 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=60.1
Q ss_pred ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCC
Q psy9829 88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHN 164 (333)
Q Consensus 88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~ 164 (333)
.|||++|-||...- --|.||||.+ |.+||-.+.|=+||. |.||++-|+.-. ++|+.||.+|.
T Consensus 66 GGlGLSIKGGaEHn------~PvviSkI~k---------dQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 66 GGLGLSIKGGAEHN------LPVVISKIYK---------DQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD 130 (505)
T ss_pred CcceeeeccccccC------ccEEeehhhh---------hhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence 39999999997643 3489999999 788898888999999 689999888875 77899999999
Q ss_pred ceEEEEEE
Q psy9829 165 CISAQIKR 172 (333)
Q Consensus 165 ~v~L~v~R 172 (333)
.|+|.|+-
T Consensus 131 eVtlTV~~ 138 (505)
T KOG3549|consen 131 EVTLTVKH 138 (505)
T ss_pred EEEEEeHh
Confidence 99999964
No 54
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.02 E-value=0.0016 Score=63.69 Aligned_cols=59 Identities=29% Similarity=0.404 Sum_probs=50.7
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~ 283 (333)
+++|..|.++ ++|++.| |++||+|++|||+.+.+.+.+++..++.. ....+.|+|.|+.
T Consensus 63 ~~~V~~V~~~---spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 63 EIVIVSPFEG---SPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 6899999999 7777666 99999999999999999888888888865 4567899998875
No 55
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=96.97 E-value=0.0018 Score=64.88 Aligned_cols=59 Identities=27% Similarity=0.419 Sum_probs=50.5
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~ 283 (333)
++.|..+.++ ++|++-| |++||+|++|||+++.+++..++..+|+. ....+.|+|.|+.
T Consensus 103 g~~V~~V~~~---SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPG---GPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCC---ChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 6889999999 7777665 99999999999999999999999988876 4457888888764
No 56
>KOG1892|consensus
Probab=96.95 E-value=0.0013 Score=71.58 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=59.7
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g 163 (333)
+.|+|++|...+|... .--||||-+|.+||+| +.++||..||. +.|++.++-|++ .|...+-..|
T Consensus 942 nnGmGLSIVAAkGaGq---~klGIYvKsVV~GgaA---------d~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen 942 NNGMGLSIVAAKGAGQ---RKLGIYVKSVVEGGAA---------DHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred cCCceEEEEeeccCCc---cccceEEEEeccCCcc---------ccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence 6799999999888877 4589999999998765 44556699999 689999999997 3333444589
Q ss_pred CceEEEEEEe
Q psy9829 164 NCISAQIKRT 173 (333)
Q Consensus 164 ~~v~L~v~R~ 173 (333)
++|.|-|...
T Consensus 1010 ~vV~leVaKq 1019 (1629)
T KOG1892|consen 1010 NVVHLEVAKQ 1019 (1629)
T ss_pred CeEEEehhhh
Confidence 9999988653
No 57
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=96.93 E-value=0.0015 Score=50.60 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhh--hcCCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFR--IAHNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr--~~g~~v~L~v~R 172 (333)
..+++|..|.+||. |... +|++||+ +.+|+..+++......++. ..+..++|.|.|
T Consensus 13 ~~g~~V~~V~~~sp---------A~~a-Gl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 13 TGGVVVVSVIPGSP---------AAKA-GLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp SSSEEEEEESTTSH---------HHHT-TS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred CCeEEEEEeCCCCc---------HHHC-CCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 36999999999764 4543 4799999 6899999988765555663 367779999988
No 58
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.70 E-value=0.0029 Score=63.83 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=47.4
Q ss_pred cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCC
Q psy9829 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPR 285 (333)
Q Consensus 219 ~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~ 285 (333)
..+++|.+|.++ ++|++.| |++||+|++|||+...+ ..+....+.. ..+.+.|+|.|+...
T Consensus 256 ~~Gv~V~~V~~~---spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 256 QRGALVAQVLPG---SPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CCceEEEEccCC---CChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 358999999999 8777665 99999999999998775 4455555544 467899999997533
No 59
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.67 E-value=0.0034 Score=67.18 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=50.9
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeC--C---ccCCCCCHHHHHHHHHhcCC-ceEEEEecc
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKIN--N---HPTDGMSVKEARKLIDSSKE-KLSLTIRRE 282 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~IN--G---~~~~~~s~~eA~~~l~~s~~-~v~L~V~R~ 282 (333)
.++|.+|.|| ++|++.+.|++||+|++|| | .++.+++..+++.+|++.++ .|+|+|.|.
T Consensus 256 ~~~V~~vipG---sPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 256 YTVINSLVAG---GPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEccCC---ChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 5899999999 8888888899999999999 4 35668999999999988655 689999874
No 60
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.55 E-value=0.0083 Score=46.12 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=46.2
Q ss_pred eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCc--chhhhhhhh-cCC
Q psy9829 89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGV--VGSWQVFRI-AHN 164 (333)
Q Consensus 89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv--~~a~~alr~-~g~ 164 (333)
+||+.+. .++.+++|+.|.++| ||.. ..|++||. +.||+..+++. .....+++. .+.
T Consensus 3 ~lG~~~~---------~~~~~~~V~~v~~~s---------~a~~-~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~ 63 (85)
T cd00988 3 GIGLELK---------YDDGGLVITSVLPGS---------PAAK-AGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT 63 (85)
T ss_pred EEEEEEE---------EcCCeEEEEEecCCC---------CHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence 6677664 134689999999966 4444 35799999 58999999886 444455543 456
Q ss_pred ceEEEEEE
Q psy9829 165 CISAQIKR 172 (333)
Q Consensus 165 ~v~L~v~R 172 (333)
.+.|.+.|
T Consensus 64 ~i~l~v~r 71 (85)
T cd00988 64 KVRLTLKR 71 (85)
T ss_pred EEEEEEEc
Confidence 68888876
No 61
>KOG3605|consensus
Probab=96.36 E-value=0.0028 Score=66.70 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=50.8
Q ss_pred EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC--ceEEEEec
Q psy9829 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRR 281 (333)
Q Consensus 222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~--~v~L~V~R 281 (333)
+.|-.+.++ |+|++-|.|-.||+|++|||.+|-++-+..|+.+|++.+. .|.|+|-+
T Consensus 675 VViAnmm~~---GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~ 733 (829)
T KOG3605|consen 675 VVIANMMHG---GPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS 733 (829)
T ss_pred HHHHhcccC---ChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEec
Confidence 457888999 9999999999999999999999999999999999999886 46666643
No 62
>KOG4371|consensus
Probab=96.32 E-value=0.013 Score=64.52 Aligned_cols=143 Identities=20% Similarity=0.315 Sum_probs=93.5
Q ss_pred CCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCceEEEEEEeeccCC-CCCCCCCCCCCCce-eEEeeecCC
Q psy9829 127 DQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNCISAQIKRTHFNYD-QPEKGEMSFRKGDV-FHVIDTLHN 201 (333)
Q Consensus 127 ~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~v~L~v~R~~~~~~-~p~~~~l~~~~g~~-~hv~~sl~~ 201 (333)
+.||-.+--|++||. +.||++.+.|.+ .++.-++..+..+.|-|.|.++... .|..+.+...+--. ..+.
T Consensus 1178 ~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~----- 1252 (1332)
T KOG4371|consen 1178 SEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLL----- 1252 (1332)
T ss_pred cCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheee-----
Confidence 445555556799999 689999999975 4444556677788898988554331 12111111100000 0000
Q ss_pred Cccccccceeecccccc-----cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE
Q psy9829 202 GVVGSWQVFRIDFGIIL-----GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS 276 (333)
Q Consensus 202 ~~lG~~~~~~~d~G~~l-----~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~ 276 (333)
...+...|+.+ ..+|||..|... ++|.-.|.|+.||++...+|.+.++.+...--..++-.-+-+.
T Consensus 1253 ------~~p~~~~~~~~~~~~~s~~~~~~~~~~~---~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~ 1323 (1332)
T KOG4371|consen 1253 ------KKPMATLGLSLAKRTMSDGIFIRNIAQD---SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQ 1323 (1332)
T ss_pred ------ecccccccccccccCcCCceeeeccccc---ccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchh
Confidence 00111223333 258999999998 7888899999999999999999999988776666666667777
Q ss_pred EEEeccC
Q psy9829 277 LTIRREV 283 (333)
Q Consensus 277 L~V~R~~ 283 (333)
++++|+.
T Consensus 1324 ~~~~~~q 1330 (1332)
T KOG4371|consen 1324 ITVTREQ 1330 (1332)
T ss_pred heehhhh
Confidence 7777754
No 63
>PRK10139 serine endoprotease; Provisional
Probab=96.17 E-value=0.014 Score=59.79 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=49.6
Q ss_pred ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCC
Q psy9829 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVP 284 (333)
Q Consensus 214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~ 284 (333)
+|+....|++|.+|.++ ++|++- .|++||+|++|||+...+ .++....|.. ..+.+.|+|.|+..
T Consensus 284 lgl~~~~Gv~V~~V~~~---SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 284 FNLDVQRGAFVSEVLPN---SGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred cCCCCCCceEEEEECCC---ChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 34433468999999999 776654 599999999999988764 5666666654 46789999988763
No 64
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=96.06 E-value=0.016 Score=55.27 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=46.8
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR 285 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~ 285 (333)
.|+.|..+.++ ++|++- .|+.||+|++|||+++.+ .+++.+++... .+.+.|+|.|+...
T Consensus 191 ~G~~v~~v~~~---s~a~~a-GLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDP---SLFYKS-GLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCC---CHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 47899999998 766544 599999999999988774 45566667663 35899999998643
No 65
>KOG3542|consensus
Probab=96.03 E-value=0.0045 Score=65.63 Aligned_cols=55 Identities=31% Similarity=0.491 Sum_probs=47.6
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
.+|||-++.|| +.|++. .|+.||.||++||++.++++.+.|+.+|++.. .|+|+|
T Consensus 562 fgifV~~V~pg---skAa~~-GlKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltv 616 (1283)
T KOG3542|consen 562 FGIFVAEVFPG---SKAARE-GLKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTV 616 (1283)
T ss_pred ceeEEeeecCC---chHHHh-hhhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEE
Confidence 58999999999 666666 49999999999999999999999999999854 455555
No 66
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.63 E-value=0.029 Score=55.50 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=45.5
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~ 283 (333)
.+++|.++.++ ++|++- .|++||+|++|||+...+ .++..+.++. ..+.+.|+|.|+.
T Consensus 278 ~Gv~V~~V~~~---spA~~a-GL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPN---GPAARA-GILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCC---ChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 58999999999 776654 599999999999987664 4555555654 4678999999875
No 67
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.61 E-value=0.031 Score=43.09 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=42.6
Q ss_pred CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc--CCceEEEEEE
Q psy9829 106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA--HNCISAQIKR 172 (333)
Q Consensus 106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~--g~~v~L~v~R 172 (333)
...|++|+.|.+||. |.. .+|++||. +.+|+..++.......++... +..+.|.+.|
T Consensus 8 ~~~Gv~V~~V~~~sp---------a~~-aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 8 AVAGVVIVGVIVGSP---------AEN-AVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred cCCcEEEEEECCCCh---------HHh-cCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 456999999999764 443 35799999 689999988776555566543 5668888877
No 68
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.54 E-value=0.03 Score=43.15 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc--CCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA--HNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~--g~~v~L~v~R 172 (333)
..+++|++|.++| ||.. ..|++||. +.+|+..+++.....++++.. +..+.+.+.|
T Consensus 23 ~~g~~V~~v~~~s---------~a~~-~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 23 TKGVLVASVDPGS---------PAAK-AGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLR 81 (90)
T ss_pred CCEEEEEEECCCC---------HHHH-cCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4589999999965 4443 34799999 589999988876555566553 6678888876
No 69
>PRK10942 serine endoprotease; Provisional
Probab=95.47 E-value=0.028 Score=57.93 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=46.5
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhc--CCceEEEEeccCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS--KEKLSLTIRREVPR 285 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s--~~~v~L~V~R~~~~ 285 (333)
.|++|.+|.++ ++|++- .|++||+|++|||+...+ .+|....+... .+++.|.|.|+...
T Consensus 311 ~GvlV~~V~~~---SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 311 RGAFVSQVLPN---SSAAKA-GIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CceEEEEECCC---ChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 58999999999 776654 599999999999988765 45555566543 56899999887643
No 70
>PRK10898 serine endoprotease; Provisional
Probab=95.12 E-value=0.045 Score=54.25 Aligned_cols=58 Identities=19% Similarity=0.329 Sum_probs=43.9
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHH--hcCCceEEEEeccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID--SSKEKLSLTIRREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~--~s~~~v~L~V~R~~ 283 (333)
.+++|.+|.++ ++|++- .|++||+|++|||+...+. ++-...|. ...+.+.|.|.|+.
T Consensus 279 ~Gv~V~~V~~~---spA~~a-GL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPD---GPAAKA-GIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCC---ChHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 58999999999 776653 5999999999999876543 33344443 34568999998875
No 71
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=95.07 E-value=0.027 Score=57.44 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=42.3
Q ss_pred EEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHH--HhcCCceEEEEeccCC
Q psy9829 223 FVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI--DSSKEKLSLTIRREVP 284 (333)
Q Consensus 223 fI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l--~~s~~~v~L~V~R~~~ 284 (333)
+|.++.++ ++|++- .|++||+|++|||+...+. +|....+ ..-.+++.++|.|+..
T Consensus 129 lV~~V~~~---SpA~kA-GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 129 VVGEIAPN---SIAAQA-QIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred cccccCCC---CHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence 58999999 777655 6999999999999987765 3333333 3334679999999865
No 72
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.06 E-value=0.026 Score=54.43 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=45.1
Q ss_pred EEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC--CceEEEEeccCCCCC
Q psy9829 225 KEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPT 287 (333)
Q Consensus 225 ~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~--~~v~L~V~R~~~~~~ 287 (333)
-++.||++ ......-.|+.||++.+|||.++.+ .++|.++++.-. ..++|+|.|++.+.+
T Consensus 209 Yrl~Pgkd-~~lF~~~GLq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~~~ 270 (276)
T PRK09681 209 YAVKPGAD-RSLFDASGFKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGARHD 270 (276)
T ss_pred EEECCCCc-HHHHHHcCCCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEEEE
Confidence 35678733 3445567899999999999998874 567778887644 479999999986543
No 73
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.87 E-value=0.075 Score=40.63 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
.|+.|++|.+||. |.. . |++||. +.+|+..++.......+++. .+..+++.+.|
T Consensus 8 ~Gv~V~~V~~~s~---------A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r 64 (79)
T cd00986 8 HGVYVTSVVEGMP---------AAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKR 64 (79)
T ss_pred cCEEEEEECCCCc---------hhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 4799999999764 443 3 799999 58999988776444455553 35568888876
No 74
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.85 E-value=0.06 Score=40.87 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=37.6
Q ss_pred CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
++.++.|++|.+||.| .. .+|++||+ +.+|+..+++.. ++++. .+..+.+.+.|
T Consensus 10 ~~~~~~V~~V~~~s~a---------~~-aGl~~GD~I~~Ing~~v~~~~---~~l~~~~~~~~v~l~v~r 66 (80)
T cd00990 10 EEGLGKVTFVRDDSPA---------DK-AGLVAGDELVAVNGWRVDALQ---DRLKEYQAGDPVELTVFR 66 (80)
T ss_pred cCCcEEEEEECCCChH---------HH-hCCCCCCEEEEECCEEhHHHH---HHHHhcCCCCEEEEEEEE
Confidence 3567999999997754 33 34799999 589888876632 23433 45567788776
No 75
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.71 E-value=0.068 Score=40.31 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=39.9
Q ss_pred CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhc-CCceEEEEEE
Q psy9829 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA-HNCISAQIKR 172 (333)
Q Consensus 108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~-g~~v~L~v~R 172 (333)
..++|+.|.++|. |.. .+|++||+ +.+|+..+++.....++++.. +..+.+.+.|
T Consensus 12 ~~~~V~~v~~~s~---------a~~-~gl~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 12 IEPVIGEVVPGSP---------AAK-AGLKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred cCcEEEeECCCCH---------HHH-cCCCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEE
Confidence 4589999999764 443 35799999 589999988765444556553 5567888876
No 76
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=93.20 E-value=0.37 Score=38.86 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=35.2
Q ss_pred CeEEEEEEccCc------ccCccccCCCCCCCCEEEEeCCccCCC-CCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829 220 NKIFVKEVTHRL------DNNASAGTHQLAEGDVLLKINNHPTDG-MSVKEARKLIDSSKEKLSLTIRREVP 284 (333)
Q Consensus 220 ~~IfI~~I~~g~------~ag~Aa~dg~L~~GD~Il~ING~~~~~-~s~~eA~~~l~~s~~~v~L~V~R~~~ 284 (333)
.+.-|.+|.+|. ++-++...-++++||.|++|||+.+.. .... ..+...+...+.|+|.+...
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~--~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPY--RLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HH--HHHHTTTTSEEEEEEE-STT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHH--HHhcccCCCEEEEEEecCCC
Confidence 356678888761 112333445789999999999998654 4544 34555566689999977653
No 77
>PRK11186 carboxy-terminal protease; Provisional
Probab=92.97 E-value=0.18 Score=54.19 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=44.6
Q ss_pred ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEce-----eeccCcc--hhhhhh
Q psy9829 88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVID-----TLHNGVV--GSWQVF 159 (333)
Q Consensus 88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd-----~dv~gv~--~a~~al 159 (333)
.|+|+.+.- .|..++|.+|+||| ||+...+|++||+ +.||+ ++|.|.. ..+..|
T Consensus 244 ~GIGa~l~~---------~~~~~~V~~vipGs---------PA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~li 305 (667)
T PRK11186 244 EGIGAVLQM---------DDDYTVINSLVAGG---------PAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALI 305 (667)
T ss_pred eEEEEEEEE---------eCCeEEEEEccCCC---------hHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHh
Confidence 367776651 23469999999976 5565446799999 58883 3555543 344455
Q ss_pred hh-cCCceEEEEEE
Q psy9829 160 RI-AHNCISAQIKR 172 (333)
Q Consensus 160 r~-~g~~v~L~v~R 172 (333)
+- .|..|+|.|+|
T Consensus 306 rG~~Gt~V~LtV~r 319 (667)
T PRK11186 306 KGPKGSKVRLEILP 319 (667)
T ss_pred cCCCCCEEEEEEEe
Confidence 42 57778999877
No 78
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=92.68 E-value=0.24 Score=50.28 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=51.0
Q ss_pred eeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-cCC
Q psy9829 89 TFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-AHN 164 (333)
Q Consensus 89 ~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~g~ 164 (333)
|+|+.+. - .++-+++|.+.++|+ ||+.-+ +|+||+ +.||+.++.+++ .++..+|- .|.
T Consensus 101 GiG~~i~------~--~~~~~~~V~s~~~~~---------PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt 162 (406)
T COG0793 101 GIGIELQ------M--EDIGGVKVVSPIDGS---------PAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT 162 (406)
T ss_pred ceeEEEE------E--ecCCCcEEEecCCCC---------hHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC
Confidence 7888876 2 122789999999954 777655 899999 699999999996 35555554 466
Q ss_pred ceEEEEEEe
Q psy9829 165 CISAQIKRT 173 (333)
Q Consensus 165 ~v~L~v~R~ 173 (333)
.|+|.+.|.
T Consensus 163 ~V~L~i~r~ 171 (406)
T COG0793 163 KVTLTILRA 171 (406)
T ss_pred eEEEEEEEc
Confidence 699998884
No 79
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=91.82 E-value=0.24 Score=50.22 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=42.5
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
+.+|.++.++ ++|++ +.|++||+|++|||+...+. ++..+.+-...+.+.+.+.|+
T Consensus 129 g~~V~~V~~~---SpA~~-AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~ 184 (420)
T TIGR00054 129 GPVIELLDKN---SIALE-AGIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAE 184 (420)
T ss_pred CceeeccCCC---CHHHH-cCCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEe
Confidence 5679999999 77665 46999999999999876654 455555555447888888874
No 80
>KOG3552|consensus
Probab=91.53 E-value=0.28 Score=54.12 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=45.0
Q ss_pred eEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcCCceEEEEEEe
Q psy9829 110 TKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAHNCISAQIKRT 173 (333)
Q Consensus 110 i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g~~v~L~v~R~ 173 (333)
+.|-.|.+| ||+.|+| .|||. +.|||.+|.... ..++.+|.+...|.|.|.|.
T Consensus 77 viVr~VT~G---------Gps~GKL--~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 77 VIVRFVTEG---------GPSIGKL--QPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred eEEEEecCC---------CCccccc--cCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 467788885 6889987 99999 589999998875 66889999999999999883
No 81
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=91.49 E-value=0.56 Score=47.13 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=47.1
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-c
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-A 162 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~ 162 (333)
-.|+|+.+.--.++- +...+++|+.|.+|| ||+. .+|++||+ +.||+.++.+.. .....|+. .
T Consensus 84 ~~GiG~~~~~~~~~~---~~~~g~~V~~V~~~S---------PA~~-aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~ 150 (389)
T PLN00049 84 VTGVGLEVGYPTGSD---GPPAGLVVVAPAPGG---------PAAR-AGIRPGDVILAIDGTSTEGLSLYEAADRLQGPE 150 (389)
T ss_pred ceEEEEEEEEccCCC---CccCcEEEEEeCCCC---------hHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 358888875211110 012479999999976 4454 34799999 589999998763 22334432 5
Q ss_pred CCceEEEEEE
Q psy9829 163 HNCISAQIKR 172 (333)
Q Consensus 163 g~~v~L~v~R 172 (333)
+..+.|.|+|
T Consensus 151 g~~v~ltv~r 160 (389)
T PLN00049 151 GSSVELTLRR 160 (389)
T ss_pred CCEEEEEEEE
Confidence 5668888776
No 82
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=91.08 E-value=0.84 Score=46.80 Aligned_cols=127 Identities=11% Similarity=0.145 Sum_probs=74.5
Q ss_pred eEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCCceEEEEEEeeccCCCCCCCCCCCCCC
Q psy9829 112 PHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKG 190 (333)
Q Consensus 112 is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~~v~L~v~R~~~~~~~p~~~~l~~~~g 190 (333)
|..|.|||.| . +++|++||+ +.||+..+.....-..++ .+..+.+.|.++....
T Consensus 2 I~~V~pgSpA---------e-~AGLe~GD~IlsING~~V~Dw~D~~~~l--~~e~l~L~V~~rdGe~------------- 56 (433)
T TIGR03279 2 ISAVLPGSIA---------E-ELGFEPGDALVSINGVAPRDLIDYQFLC--ADEELELEVLDANGES------------- 56 (433)
T ss_pred cCCcCCCCHH---------H-HcCCCCCCEEEEECCEECCCHHHHHHHh--cCCcEEEEEEcCCCeE-------------
Confidence 6788998865 2 246899999 589998887664322233 3456777775211000
Q ss_pred ceeEEeeecCCCccccccceeeccccccc-------------CeE-EEEEEccCcccCccccCCCCCCCCEEEEe---CC
Q psy9829 191 DVFHVIDTLHNGVVGSWQVFRIDFGIILG-------------NKI-FVKEVTHRLDNNASAGTHQLAEGDVLLKI---NN 253 (333)
Q Consensus 191 ~~~hv~~sl~~~~lG~~~~~~~d~G~~l~-------------~~I-fI~~I~~g~~ag~Aa~dg~L~~GD~Il~I---NG 253 (333)
..+. +.. ...+++|+.+. |.. ||--.=+|-+.++--+| .|--|+. |=
T Consensus 57 --~~l~--Ie~-------~~dedlG~~f~~~~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KD-----DDyRLSFL~Gny 120 (433)
T TIGR03279 57 --HQIE--IEK-------DLDEDLGLEFTTALFDGLIQCNNRCPFCFIDQQPPGKRESLYLKD-----DDYRLSFLYGSY 120 (433)
T ss_pred --EEEE--Eec-------CCCCCCcEEeccccCCcccccCCcCceEeccCCCCCCcCcceecc-----Ccchhhhhccce
Confidence 0000 000 00122333222 222 66666666555555444 3333332 44
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 254 HPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 254 ~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
..+.||+-+|-.++++.--+.+.++|
T Consensus 121 iTLTNl~~~d~~RI~~~~lspl~iSV 146 (433)
T TIGR03279 121 LTLTNLPPAEWQRIEQLRLSPLYVSV 146 (433)
T ss_pred eeecCCCHHHHHHHHHcCCCCEEEEE
Confidence 77999999999999999999999998
No 83
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=91.08 E-value=0.34 Score=46.26 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=43.3
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
..|..|+.+.+|+. |+. .+||+||+ +.+|+.++++.....+++.. .+..++|.|.|
T Consensus 190 ~~G~~v~~v~~~s~---------a~~-aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R 248 (259)
T TIGR01713 190 LEGYRLNPGKDPSL---------FYK-SGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVER 248 (259)
T ss_pred eeEEEEEecCCCCH---------HHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 35999999999764 443 56899999 68999999888655556654 34578999988
No 84
>KOG3606|consensus
Probab=90.82 E-value=0.54 Score=45.49 Aligned_cols=57 Identities=9% Similarity=-0.084 Sum_probs=43.9
Q ss_pred ceeeEEEecccCC---CCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc
Q psy9829 88 STFVGSVLGARGA---LDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV 153 (333)
Q Consensus 88 ~~~g~~i~gg~d~---p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~ 153 (333)
..|||-|--|+-- |+=-..-||||||+..|||.| +..+=|-+||- |-||++-|.|.+
T Consensus 171 kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLA---------eSTGLLaVnDEVlEVNGIEVaGKT 231 (358)
T KOG3606|consen 171 KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLA---------ESTGLLAVNDEVLEVNGIEVAGKT 231 (358)
T ss_pred CCceEEEecCceEEeccccccccCceEEEeecCCccc---------cccceeeecceeEEEcCEEecccc
Confidence 4799999877654 432225699999999998765 54555699999 689999999986
No 85
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=90.81 E-value=0.63 Score=47.27 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=44.2
Q ss_pred cccc-cCeEEEEEEcc-----CcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC-CceEEEEeccCC
Q psy9829 215 GIIL-GNKIFVKEVTH-----RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRREVP 284 (333)
Q Consensus 215 G~~l-~~~IfI~~I~~-----g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~-~~v~L~V~R~~~ 284 (333)
|+.| ..|++|-...+ |...++| ....|++||+|++|||+... +.+|..++++... +.+.|+|.|+..
T Consensus 99 GI~l~t~GVlVvg~~~v~~~~g~~~SPA-a~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge 172 (402)
T TIGR02860 99 GVKLNTKGVLVVGFSDIETEKGKIHSPG-EEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGK 172 (402)
T ss_pred EEEEecCEEEEEEEEcccccCCCCCCHH-HHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCE
Confidence 4444 24666644432 2122444 34569999999999998865 4567777777754 578999988753
No 86
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.54 Score=46.01 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=48.1
Q ss_pred ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCC-CHHHHHHHHHhcCCceEEEEeccCC
Q psy9829 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGM-SVKEARKLIDSSKEKLSLTIRREVP 284 (333)
Q Consensus 214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~-s~~eA~~~l~~s~~~v~L~V~R~~~ 284 (333)
+|+....|.+|.++.++ ++|++.| ++.||+|+++||....+. .+.++..... ..+.+.+++.|+..
T Consensus 264 ~g~~~~~G~~V~~v~~~---spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~-~g~~v~~~~~r~g~ 330 (347)
T COG0265 264 LGLPVAAGAVVLGVLPG---SPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNR-PGDEVALKLLRGGK 330 (347)
T ss_pred cCCCCCCceEEEecCCC---ChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccC-CCCEEEEEEEECCE
Confidence 34444457899999999 8877764 889999999999887665 3333333333 56789999999843
No 87
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=90.01 E-value=0.45 Score=48.72 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=35.7
Q ss_pred EEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEe
Q psy9829 224 VKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIR 280 (333)
Q Consensus 224 I~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~ 280 (333)
|..|.|+ ++|++- .|++||+|++|||+.+.+ ..+....+. .+.+.|.|.
T Consensus 2 I~~V~pg---SpAe~A-GLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPG---SIAEEL-GFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCC---CHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence 5678888 666443 699999999999988754 445555553 367888886
No 88
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=89.46 E-value=1.5 Score=41.90 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=46.0
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccCCCC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREVPRP 286 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~~~~ 286 (333)
+|+=-.+.||++ +.+.-.-.||+||+.++||+.++ -..+++-++|+. +.+.++|+|.|++.++
T Consensus 205 ki~Gyr~~pgkd-~slF~~sglq~GDIavaiNnldl--tdp~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 205 KIEGYRFEPGKD-GSLFYKSGLQRGDIAVAINNLDL--TDPEDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred ceEEEEecCCCC-cchhhhhcCCCcceEEEecCccc--CCHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence 466666777743 44444456999999999999553 346777777776 5568999999998765
No 89
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=88.44 E-value=0.95 Score=44.26 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=45.2
Q ss_pred ceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhh-cC
Q psy9829 88 STFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRI-AH 163 (333)
Q Consensus 88 ~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~-~g 163 (333)
.+||+.+. + .+.+++|+.|.+||. |..- +|++||+ +.||+..+++.. ....+++. .+
T Consensus 51 ~~lG~~~~-------~--~~~~~~V~~V~~~sp---------A~~a-GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g 111 (334)
T TIGR00225 51 EGIGIQVG-------M--DDGEIVIVSPFEGSP---------AEKA-GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKG 111 (334)
T ss_pred EEEEEEEE-------E--ECCEEEEEEeCCCCh---------HHHc-CCCCCCEEEEECCEECCCCCHHHHHHhccCCCC
Confidence 47888775 1 234899999999764 4432 3799999 589999998763 22334432 46
Q ss_pred CceEEEEEE
Q psy9829 164 NCISAQIKR 172 (333)
Q Consensus 164 ~~v~L~v~R 172 (333)
..+.|.+.|
T Consensus 112 ~~v~l~v~R 120 (334)
T TIGR00225 112 TKVSLEILR 120 (334)
T ss_pred CEEEEEEEe
Confidence 667777776
No 90
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=88.19 E-value=0.79 Score=45.37 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=42.0
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
..|++|++|.+|| ||+. .+|++||+ +.+|+..+++...-.++++. .+..+.|.|.|
T Consensus 277 ~~Gv~V~~V~~~s---------pA~~-aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 277 LRGIVITGVDPNG---------PAAR-AGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred cccceEeecCCCC---------hHHH-CCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 3699999999966 4454 35799999 58999998887544455543 46678888887
No 91
>KOG3938|consensus
Probab=87.93 E-value=0.38 Score=46.36 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=45.4
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCc
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK 274 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~ 274 (333)
+--|||.|.+| +.-.+=--.|+||.|=+|||+++-+..|=|..++|+.-...
T Consensus 149 GyAFIKrIkeg---svidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 149 GYAFIKRIKEG---SVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred ceeeeEeecCC---chhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 34699999999 77766557999999999999999999999999999986543
No 92
>PRK10898 serine endoprotease; Provisional
Probab=87.63 E-value=1 Score=44.77 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=40.9
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
..|++|++|.+|| ||+. .+|++||+ +.+|+..+++...-..++.. .+..+.|.+.|
T Consensus 278 ~~Gv~V~~V~~~s---------pA~~-aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 278 LQGIVVNEVSPDG---------PAAK-AGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred CCeEEEEEECCCC---------hHHH-cCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4799999999965 5554 35799999 58999998776433344433 45668888887
No 93
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.51 E-value=1.1 Score=39.67 Aligned_cols=74 Identities=8% Similarity=0.003 Sum_probs=47.7
Q ss_pred CCCCCCeeehHHHHHHHHcCCEEEEecCccccccccccc-cccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhh
Q psy9829 7 SKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQ-FYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSR 81 (333)
Q Consensus 7 ~~~~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~-l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer 81 (333)
...++++|+. +++..+++|+++|+|-.......++... -..++||+.++.....+++..|..++.+.+..+.++
T Consensus 71 ~~g~~yg~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r 145 (186)
T PRK10078 71 ANGLYYGVGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLAR 145 (186)
T ss_pred HhCCccCCcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567889998 5999999999999986655444444432 123467777755555567866654444445555543
No 94
>KOG3651|consensus
Probab=87.18 E-value=1.8 Score=42.65 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=48.1
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh---c
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI---A 162 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~---~ 162 (333)
..-.|+||-|| .|+. |-+||-.|--+. ||..+++++.||- +.||+++|-|.+ .+.+.++ +
T Consensus 15 ~nliGISIGGG--apyC----PClYiVQvFD~t---------PAa~dG~i~~GDEi~avNg~svKGkt-KveVAkmIQ~~ 78 (429)
T KOG3651|consen 15 KNLIGISIGGG--APYC----PCLYIVQVFDKT---------PAAKDGRIRCGDEIVAVNGISVKGKT-KVEVAKMIQVS 78 (429)
T ss_pred ccceeEEecCC--CCcC----CeEEEEEeccCC---------chhccCccccCCeeEEecceeecCcc-HHHHHHHHHHh
Confidence 44678998776 4553 679999988854 6666778899999 589999999985 3344443 4
Q ss_pred CCceEEEE
Q psy9829 163 HNCISAQI 170 (333)
Q Consensus 163 g~~v~L~v 170 (333)
-+.|.+..
T Consensus 79 ~~eV~Ihy 86 (429)
T KOG3651|consen 79 LNEVKIHY 86 (429)
T ss_pred ccceEEEe
Confidence 44455544
No 95
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=86.32 E-value=1.1 Score=46.95 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=40.6
Q ss_pred ccccccc---CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCcc--CCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829 213 DFGIILG---NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP--TDGMSVKEARKLIDSSKEKLSLTIRREV 283 (333)
Q Consensus 213 d~G~~l~---~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~--~~~~s~~eA~~~l~~s~~~v~L~V~R~~ 283 (333)
..|+++. +..-|+.+.++ |+|.+- .|++||+|++|||.+ ++... +++.+.+.+-|..
T Consensus 452 ~LGl~v~~~~g~~~i~~V~~~---gPA~~A-Gl~~Gd~ivai~G~s~~l~~~~----------~~d~i~v~~~~~~ 513 (558)
T COG3975 452 YLGLKVKSEGGHEKITFVFPG---GPAYKA-GLSPGDKIVAINGISDQLDRYK----------VNDKIQVHVFREG 513 (558)
T ss_pred ccceEecccCCeeEEEecCCC---ChhHhc-cCCCccEEEEEcCccccccccc----------cccceEEEEccCC
Confidence 3455553 46789999999 777665 499999999999983 33333 4567777775543
No 96
>KOG1421|consensus
Probab=86.21 E-value=2 Score=46.37 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=79.6
Q ss_pred ceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh-cCCceEEEEEEeeccCCCCC--CCC
Q psy9829 109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI-AHNCISAQIKRTHFNYDQPE--KGE 184 (333)
Q Consensus 109 ~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~-~g~~v~L~v~R~~~~~~~p~--~~~ 184 (333)
-..|..+.+ +|||+..+ ++||+ |.||.+-.+++....+.|-. .|..++|+|.|-..+.+--. ...
T Consensus 304 mLvV~~vL~---------~gpa~k~L--e~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdl 372 (955)
T KOG1421|consen 304 MLVVETVLP---------EGPAEKKL--EPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDL 372 (955)
T ss_pred eEEEEEecc---------CCchhhcc--CCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccc
Confidence 456778888 56888876 99999 79998888777666666644 78889999988332110000 000
Q ss_pred CCCC-------CCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCC
Q psy9829 185 MSFR-------KGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257 (333)
Q Consensus 185 l~~~-------~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~ 257 (333)
.+.. -|-++|-+ .-...+ .|-+.+. |.||.+-. | +.+++-+ +. +-.|.+|||+.+.
T Consensus 373 h~itp~R~levcGav~hdl--------syq~ar--~y~lP~~-GvyVa~~~-g---sf~~~~~-~y-~~ii~~vanK~tP 435 (955)
T KOG1421|consen 373 HGITPDRFLEVCGAVFHDL--------SYQLAR--LYALPVE-GVYVASPG-G---SFRHRGP-RY-GQIIDSVANKPTP 435 (955)
T ss_pred cCCCCceEEEEcceEecCC--------CHHHHh--hcccccC-cEEEccCC-C---CccccCC-cc-eEEEEeecCCcCC
Confidence 0000 01111111 111111 1112333 79998866 5 5555443 33 8889999999988
Q ss_pred CC-CHHHHHHHHH
Q psy9829 258 GM-SVKEARKLID 269 (333)
Q Consensus 258 ~~-s~~eA~~~l~ 269 (333)
++ +..|+.+.|.
T Consensus 436 dLdaFidvlk~L~ 448 (955)
T KOG1421|consen 436 DLDAFIDVLKELP 448 (955)
T ss_pred CHHHHHHHHHhcc
Confidence 87 7777777763
No 97
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=85.37 E-value=3.4 Score=40.67 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=55.5
Q ss_pred HHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHhhccccccceeeEEEecccCCC
Q psy9829 22 MMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGAL 101 (333)
Q Consensus 22 V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~raer~~qE~G~~~g~~i~gg~d~p 101 (333)
+-++|+.++||.+.+++...-... |. +||| +.+.|..+-.+-..+...+.+-+.+ +.+.|-.--+.=.|+.|.-
T Consensus 155 ~~~~g~~vilD~Sg~~L~~~L~~~--P~--lIKP-N~~EL~~~~g~~~~~~~d~i~~a~~-l~~~g~~~ViVSlG~~Gal 228 (310)
T COG1105 155 LRQQGAKVILDTSGEALLAALEAK--PW--LIKP-NREELEALFGRELTTLEDVIKAARE-LLAEGIENVIVSLGADGAL 228 (310)
T ss_pred HHhcCCeEEEECChHHHHHHHccC--Cc--EEec-CHHHHHHHhCCCCCChHHHHHHHHH-HHHCCCCEEEEEecCcccE
Confidence 334599999999999997665555 65 8898 7888887766544433333333333 5555555555556788877
Q ss_pred CCCCCCCceEeE
Q psy9829 102 DLANYDPSTKPH 113 (333)
Q Consensus 102 ~~~~~D~~i~is 113 (333)
.+ +.+...|++
T Consensus 229 ~~-~~~~~~~a~ 239 (310)
T COG1105 229 LV-TAEGVYFAS 239 (310)
T ss_pred EE-ccCCeEEEe
Confidence 76 355666665
No 98
>KOG3129|consensus
Probab=84.72 E-value=2.4 Score=39.69 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=43.1
Q ss_pred EEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCC-CCHHHHHHHHHhcCC-ceEEEEeccCCC
Q psy9829 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDG-MSVKEARKLIDSSKE-KLSLTIRREVPR 285 (333)
Q Consensus 222 IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~-~s~~eA~~~l~~s~~-~v~L~V~R~~~~ 285 (333)
.+|.+|.|+ ++|+. +.||.||.|+.+.++...+ ..+.+-...-+...+ -+.++|.|...+
T Consensus 141 a~V~sV~~~---SPA~~-aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 141 AVVDSVVPG---SPADE-AGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred EEEeecCCC---Chhhh-hCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 689999999 66654 4699999999998865444 435554444454444 578889998765
No 99
>KOG0606|consensus
Probab=84.65 E-value=1.7 Score=49.09 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=45.6
Q ss_pred EEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 224 VKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 224 I~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
|-.|.+| +.| ...+|+.+|.|+-+||++..++.|.|-.++|-++..+|.+.+
T Consensus 662 v~sv~eg---sPA-~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t 713 (1205)
T KOG0606|consen 662 VGSVEEG---SPA-FEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT 713 (1205)
T ss_pred eeeecCC---CCc-cccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence 5677787 554 355899999999999999999999999999999999998877
No 100
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=83.97 E-value=2 Score=37.40 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=47.0
Q ss_pred CCCeeehHHHHHHHHcCCEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHHh
Q psy9829 10 CSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRS 80 (333)
Q Consensus 10 ~~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~rae 80 (333)
.++.++. .+...+++|+.+|+|...+....++.....-++||+.++.....++++.|.....+.+..+..
T Consensus 75 ~~~g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~ 144 (179)
T TIGR02322 75 LSYGIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLA 144 (179)
T ss_pred ccccChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556676 478888999999999987766665543223478999976655566887765444444444543
No 101
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=83.38 E-value=2.4 Score=41.94 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=45.5
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh--cCCceEEEEeccC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS--SKEKLSLTIRREV 283 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~--s~~~v~L~V~R~~ 283 (333)
.|+|+..+.+. +++. |.|+.||.|++|||.+.. +.+|....+++ ..+.|++...|..
T Consensus 130 ~gvyv~~v~~~---~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDN---SPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCC---cchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence 47999999998 6664 689999999999997654 56777777765 5578999999743
No 102
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=82.85 E-value=3.6 Score=33.17 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCceEeEecCCCCcccccCCCCCCCC------ccccccCCE-EEEceeeccCcchhhhhhh-hcCCceEEEEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKG------EMSFRKGDV-FHVIDTLHNGVVGSWQVFR-IAHNCISAQIKR 172 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g------~l~lr~gD~-I~Vnd~dv~gv~~a~~alr-~~g~~v~L~v~R 172 (333)
+.+.-|++|.+|.. +.|... -+.+++||+ +.||+..+.....-..+|. .++..|.|.|.+
T Consensus 11 ~~~y~I~~I~~gd~------~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 11 NGGYRIARIYPGDP------WNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp TTEEEEEEE-BS-T------TSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-
T ss_pred CCEEEEEEEeCCCC------CCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEEec
Confidence 46788999999743 233221 135699999 5899999887654445554 488899999976
No 103
>KOG4407|consensus
Probab=82.54 E-value=1.5 Score=50.24 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=50.1
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEE
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V 279 (333)
-.|||++|.+. +.|.-. .||-||+||.+|.....++--.+++..|+.....++|.|
T Consensus 143 eT~~~~eV~~n---~~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 143 ETIFIKEVQAN---GPAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred hhhhhhhhccC---ChhHHH-hhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 36999999999 665544 899999999999999999999999999999999988865
No 104
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=82.43 E-value=1.2 Score=43.17 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=40.3
Q ss_pred eEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEE
Q psy9829 110 TKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKR 172 (333)
Q Consensus 110 i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R 172 (333)
+.=-+|.||..+ .-....+||+||. +.+|+.++++...+.+++.. ....++|.|.|
T Consensus 206 l~GYrl~Pgkd~-------~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeR 264 (276)
T PRK09681 206 IVGYAVKPGADR-------SLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLR 264 (276)
T ss_pred ceEEEECCCCcH-------HHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEE
Confidence 444567777643 3355678899999 69999999888655555554 35568899988
No 105
>KOG1421|consensus
Probab=81.21 E-value=2.8 Score=45.34 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=45.3
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHh-cCCceEEEEeccCCC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS-SKEKLSLTIRREVPR 285 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~-s~~~v~L~V~R~~~~ 285 (333)
-+-|+.+.++ |.|. -.|++||.++++|+.++- ..+++.++|+. ....+.|+|+|....
T Consensus 304 mLvV~~vL~~---gpa~--k~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 304 MLVVETVLPE---GPAE--KKLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred eEEEEEeccC---Cchh--hccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEE
Confidence 4789999999 6654 359999999999976543 46777778865 566899999998763
No 106
>PF12812 PDZ_1: PDZ-like domain
Probab=76.27 E-value=4 Score=32.02 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=32.6
Q ss_pred ccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC
Q psy9829 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273 (333)
Q Consensus 214 ~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~ 273 (333)
+++.++ +.|+ ....| +++ ..+.+..|-+|.+|||+++.++ ++-++.+++..|
T Consensus 26 ~~~~~~-gv~v-~~~~g---~~~-~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 26 YGIPVG-GVYV-AVSGG---SLA-FAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred hCCCCC-EEEE-EecCC---Chh-hhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 445444 4455 55665 443 4455999999999999988765 444445544433
No 107
>KOG4371|consensus
Probab=74.48 E-value=3.2 Score=46.72 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=51.5
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 285 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~ 285 (333)
+...|+..+.. + |--..+|.+||.++.+||+-.++.-|.||+..+++-.++|.|-|+|..+.
T Consensus 1169 ~~~~~~~~~~~---~-~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1169 GRVCIKQLTSE---P-AISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPA 1230 (1332)
T ss_pred cceehhhcccC---C-CCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcc
Confidence 34566666654 2 33356799999999999999999999999999999999999999998654
No 108
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=72.78 E-value=7.1 Score=37.34 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=32.0
Q ss_pred CccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEee
Q psy9829 132 GEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRTH 174 (333)
Q Consensus 132 g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~~ 174 (333)
...+|+.||+ +++|++|.+.=...-.++++ ..+.++|.|.|+-
T Consensus 221 ~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G 266 (275)
T COG3031 221 YKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRG 266 (275)
T ss_pred hhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecC
Confidence 3456799999 99999998776444455555 5677889998854
No 109
>KOG1703|consensus
Probab=69.32 E-value=1.9 Score=44.67 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=54.6
Q ss_pred cCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCCCC
Q psy9829 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 286 (333)
Q Consensus 219 ~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~~~ 286 (333)
...|-|..+++++++..+ .+.++|.+..|++...+.|+|.+|+..++.+...+.+.+.|.....
T Consensus 20 ~~~l~~~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 83 (479)
T KOG1703|consen 20 LQPLRILRVTPGGKAADA----ELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSETSS 83 (479)
T ss_pred ccccceeccCCCCccccc----cccccccccccccccccccccccccCcccccccccccccccccccc
Confidence 345789999999554443 6889999999999999999999999999999999999999975443
No 110
>KOG1320|consensus
Probab=67.74 E-value=11 Score=39.19 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=44.5
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCC--ceEEEEeccCCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRREVPR 285 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~--~v~L~V~R~~~~ 285 (333)
.+++|..+.|+ +.+. .+.+.+||+|.+|||+...|..| -..+|+.|.. +|.++..|....
T Consensus 398 q~v~is~Vlp~---~~~~-~~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 398 QLVLVSQVLPG---SING-GYGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred eEEEEEEeccC---CCcc-cccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCccc
Confidence 35899999999 5543 35799999999999999888644 3667777764 777666555433
No 111
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=65.49 E-value=5.2 Score=28.58 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=19.5
Q ss_pred cccCCCCCCCCccccccCCEEEEc
Q psy9829 122 THFNYDQPEKGEMSFRKGDVFHVI 145 (333)
Q Consensus 122 ~~~~~~gpa~g~l~lr~gD~I~Vn 145 (333)
+.|+|.++....|+|+.||.|.|.
T Consensus 4 a~~d~~~~~~~~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 4 AIFDYVAEDPDELSFKKGDVIEVL 27 (55)
T ss_dssp ESSSBESSSTTB-EB-TTEEEEEE
T ss_pred EeEEECCCCCCceEEecCCEEEEE
Confidence 568899999999999999999885
No 112
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=62.59 E-value=14 Score=32.11 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=37.1
Q ss_pred CeEEEEEEccCcccCccccCCCCCC-CCEEEEeCCccCCCCCHHHHHHHHHhcCC-ceEEEEec
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAE-GDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIRR 281 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~-GD~Il~ING~~~~~~s~~eA~~~l~~s~~-~v~L~V~R 281 (333)
.+.-|.+|.|+ ++|+.-| |++ .|.|+.+++..+++. ++-.++++...+ .|.|.|-.
T Consensus 43 ~~~~Vl~V~p~---SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 43 EGWHVLRVAPN---SPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYN 100 (138)
T ss_dssp CEEEEEEE-TT---SHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEE
T ss_pred ceEEEeEecCC---CHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEE
Confidence 46889999999 8877665 888 699999999887753 444556666554 68888743
No 113
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=61.08 E-value=16 Score=36.33 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=42.3
Q ss_pred CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhh--hcCCceEEEEEEe
Q psy9829 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFR--IAHNCISAQIKRT 173 (333)
Q Consensus 108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr--~~g~~v~L~v~R~ 173 (333)
.|+|+..++. +.|+.|.+ ..||. +.|||..+......-.-++ ..|..|++..+|.
T Consensus 130 ~gvyv~~v~~---------~~~~~gkl--~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVID---------NSPFKGKL--EAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccC---------Ccchhcee--ccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEec
Confidence 5899999999 45778876 99999 6899999877654434443 3688899999873
No 114
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=58.33 E-value=10 Score=26.73 Aligned_cols=23 Identities=39% Similarity=0.881 Sum_probs=17.8
Q ss_pred ccCCCCCCCCccccccCCEEEEc
Q psy9829 123 HFNYDQPEKGEMSFRKGDVFHVI 145 (333)
Q Consensus 123 ~~~~~gpa~g~l~lr~gD~I~Vn 145 (333)
.|+|.+..+.+|.|++||.|.|.
T Consensus 2 l~~y~~~~~dELs~~~Gd~i~v~ 24 (49)
T PF14604_consen 2 LYDYEAQDPDELSFKKGDVITVL 24 (49)
T ss_dssp SSCBCSSSTTB-EB-TTEEEEEE
T ss_pred CccCCCCCcCEeeEcCCCEEEEE
Confidence 36788888999999999998873
No 115
>COG2985 Predicted permease [General function prediction only]
Probab=58.04 E-value=50 Score=34.79 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEEEEceeeccCcchhhh-hhhhcCCc--------eEEE
Q psy9829 99 GALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ-VFRIAHNC--------ISAQ 169 (333)
Q Consensus 99 d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I~Vnd~dv~gv~~a~~-alr~~g~~--------v~L~ 169 (333)
|-|-|. +.+||+|++..++.-.+ .+.+.-++.||.+.+++.+ ++.. +-+..|.. .+|.
T Consensus 221 d~p~l~--~~~v~~sRikrd~~~~~------p~~~~~i~~Gd~l~lVG~~-----~~l~r~~~~~G~evd~~~~~~~~l~ 287 (544)
T COG2985 221 DLPILR--QEGVYCSRIKRDGILAV------PDPDTIIQVGDELHLVGYP-----DALARLDLRIGKEVDDRLLLDTRLR 287 (544)
T ss_pred hccccc--CCceEEEEEecCCeeec------CCCCcccccCcEEEecCCh-----HHHHHHHHhccccccccccccccee
Confidence 457773 45999999999765433 3344457999999885555 2222 11222222 2233
Q ss_pred EEEeeccCCCCCCCCCCCCCCceeEEeeecCCCccccccceeecccccccCeEEEEEEccCcccCccccCCCCCCCCEEE
Q psy9829 170 IKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLL 249 (333)
Q Consensus 170 v~R~~~~~~~p~~~~l~~~~g~~~hv~~sl~~~~lG~~~~~~~d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il 249 (333)
..|-.--. ..++|.+. .|.+++- -+.||++|.-..-.=.+..|-.||-||++-
T Consensus 288 ~~rivVtn-----------------------~~vlGk~l---~~L~~~~-~g~~I~Ri~Ra~iElv~~~d~~lq~gDvl~ 340 (544)
T COG2985 288 TERVVVTN-----------------------ENVLGKRL---RDLNLTE-YGVFINRINRADIELVASDDVVLQKGDVLQ 340 (544)
T ss_pred eEEEEeec-----------------------hhhhccch---hhcCccc-cceeeeehhhcCccccCCcchhhhhcceee
Confidence 33321111 11223221 1222221 358999998885556778888999999664
Q ss_pred EeCCccCCCCCHHHHHHHHHhcCCceE
Q psy9829 250 KINNHPTDGMSVKEARKLIDSSKEKLS 276 (333)
Q Consensus 250 ~ING~~~~~~s~~eA~~~l~~s~~~v~ 276 (333)
+-| +--..+++.+.+.++..+++
T Consensus 341 -vvg---~~~~v~~~~~~lG~~~~~lq 363 (544)
T COG2985 341 -VVG---RARRVKAVADVLGNAQIKLQ 363 (544)
T ss_pred -ecc---chHHHHHHHHHhccccceee
Confidence 434 33456777777777655543
No 116
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=56.67 E-value=11 Score=25.52 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=21.1
Q ss_pred cccCCCCCCCCccccccCCEEEEcee
Q psy9829 122 THFNYDQPEKGEMSFRKGDVFHVIDT 147 (333)
Q Consensus 122 ~~~~~~gpa~g~l~lr~gD~I~Vnd~ 147 (333)
+.|+|.....+++.|++||.|.+-+.
T Consensus 7 a~~~~~~~~~~~l~~~~Gd~v~v~~~ 32 (58)
T smart00326 7 ALYDYTAQDPDELSFKKGDIITVLEK 32 (58)
T ss_pred EeeeeCCCCCCCCCCCCCCEEEEEEc
Confidence 45778888899999999999877443
No 117
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=53.63 E-value=12 Score=25.90 Aligned_cols=22 Identities=36% Similarity=0.869 Sum_probs=18.8
Q ss_pred ccCCCCCCCCccccccCCEEEE
Q psy9829 123 HFNYDQPEKGEMSFRKGDVFHV 144 (333)
Q Consensus 123 ~~~~~gpa~g~l~lr~gD~I~V 144 (333)
.|+|.+..+++++|+.||.|.|
T Consensus 3 lydf~~~~~~eLs~~~Gd~i~v 24 (48)
T PF00018_consen 3 LYDFDAEDPDELSFKKGDIIEV 24 (48)
T ss_dssp SSCBETSSTTBSEB-TTEEEEE
T ss_pred CeeeCCCCCCEEeEECCCEEEE
Confidence 5788999999999999999877
No 118
>KOG1738|consensus
Probab=52.15 E-value=15 Score=39.46 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=52.3
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~--~a~~alr~~g 163 (333)
..|+|+-|----|++| +||++.+++ ||+.+..|..||- +.+|+.-|.|-. .-|+.|+...
T Consensus 212 ~eglg~~I~Ssydg~h--------~~s~~~e~S---------pad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~ 274 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDGPH--------VTSKIFEQS---------PADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETP 274 (638)
T ss_pred ccCCceEEeeecCCce--------eccccccCC---------hHHHhhcccCccceeeecccccccchhHhHHhhcccCc
Confidence 6678888876555555 678888865 8899999999999 789999988864 4466777777
Q ss_pred CceEEEEEE
Q psy9829 164 NCISAQIKR 172 (333)
Q Consensus 164 ~~v~L~v~R 172 (333)
.-+.+.|+.
T Consensus 275 sgi~l~lkK 283 (638)
T KOG1738|consen 275 AGIELTLKK 283 (638)
T ss_pred ccceeeeec
Confidence 777766644
No 119
>KOG1320|consensus
Probab=50.89 E-value=29 Score=36.26 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=40.8
Q ss_pred CceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhhcCC--ceEEEEEE
Q psy9829 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIAHN--CISAQIKR 172 (333)
Q Consensus 108 ~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~g~--~v~L~v~R 172 (333)
-+..|+.|+||+ ++.+. .+++||+ ++||+..|.|.-+-..+++.+-. .+.++.+|
T Consensus 398 q~v~is~Vlp~~---------~~~~~-~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~ 455 (473)
T KOG1320|consen 398 QLVLVSQVLPGS---------INGGY-GLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRR 455 (473)
T ss_pred eEEEEEEeccCC---------Ccccc-cccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEec
Confidence 378999999965 45553 4799999 69999999998666677777544 45555555
No 120
>KOG1738|consensus
Probab=49.11 E-value=25 Score=37.80 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=53.8
Q ss_pred CeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccCC
Q psy9829 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 284 (333)
Q Consensus 220 ~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~~ 284 (333)
+.-+|+++.++ ++|..-..+..||.|+.||+...-+-.+.--++-+..+..-+.|+|.+.+.
T Consensus 225 g~h~~s~~~e~---Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 225 GPHVTSKIFEQ---SPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPV 286 (638)
T ss_pred CceeccccccC---ChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCC
Confidence 45678888998 888888899999999999998888999999999999999889888866543
No 121
>KOG3532|consensus
Probab=48.76 E-value=39 Score=36.99 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=45.5
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEeccC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREV 283 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~~ 283 (333)
.+-|-.+.|. .+|.+. .|.+||++.+|||++.. |..+|.+.++.....|...+.|..
T Consensus 399 ~v~v~tv~~n---s~a~k~-~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 399 AVKVCTVEDN---SLADKA-AFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSL 455 (1051)
T ss_pred EEEEEEecCC---ChhhHh-cCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeecc
Confidence 4567788888 555443 69999999999998754 678999999999998888777743
No 122
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.22 E-value=37 Score=33.18 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=41.3
Q ss_pred CCCceEeEecCCCCcccccCCCCCCCCccccccCCE-EEEceeeccCcchhhhhhhh--cCCceEEEEEEe
Q psy9829 106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRI--AHNCISAQIKRT 173 (333)
Q Consensus 106 ~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~--~g~~v~L~v~R~ 173 (333)
.+.|.+|..|.|||. |.. ..+++||. +.+|+..+.+...-..++.. .+..+.+.+.|.
T Consensus 268 ~~~G~~V~~v~~~sp---------a~~-agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 268 VAAGAVVLGVLPGSP---------AAK-AGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred CCCceEEEecCCCCh---------HHH-cCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEEC
Confidence 467899999999764 444 35799999 58888988887544343332 466788888773
No 123
>KOG3129|consensus
Probab=47.34 E-value=32 Score=32.41 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCceEeEecCCCCcccccCCCCCCCCccccccCCEEE
Q psy9829 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFH 143 (333)
Q Consensus 107 D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I~ 143 (333)
-|-.+|++|.||| ||+. .+||+||.|.
T Consensus 138 ~~Fa~V~sV~~~S---------PA~~-aGl~~gD~il 164 (231)
T KOG3129|consen 138 RPFAVVDSVVPGS---------PADE-AGLCVGDEIL 164 (231)
T ss_pred cceEEEeecCCCC---------hhhh-hCcccCceEE
Confidence 4578999999987 5565 4689999953
No 124
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=45.04 E-value=23 Score=36.23 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCCCCccccccCCE-EEEceeeccCcchhhhhhhhc-CCceEEEEEE
Q psy9829 128 QPEKGEMSFRKGDV-FHVIDTLHNGVVGSWQVFRIA-HNCISAQIKR 172 (333)
Q Consensus 128 gpa~g~l~lr~gD~-I~Vnd~dv~gv~~a~~alr~~-g~~v~L~v~R 172 (333)
.||.. ..|++||. +.+|+..++...+..++++.. +..+.|.|+|
T Consensus 124 SPAa~-AGLq~GDiIvsING~~V~s~~DL~~iL~~~~g~~V~LtV~R 169 (402)
T TIGR02860 124 SPGEE-AGIQIGDRILKINGEKIKNMDDLANLINKAGGEKLTLTIER 169 (402)
T ss_pred CHHHH-cCCCCCCEEEEECCEECCCHHHHHHHHHhCCCCeEEEEEEE
Confidence 35544 35899999 589999988876555666653 5668888877
No 125
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=44.20 E-value=44 Score=29.11 Aligned_cols=58 Identities=12% Similarity=-0.066 Sum_probs=37.0
Q ss_pred CCeeehHHHHHHHHcCCEEEEecCccccccccc-----cccccEEEEEecCchhhHHhhhcCC
Q psy9829 11 SGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNY-----AQFYPIVIFLRAETKSNVKELRAGI 68 (333)
Q Consensus 11 ~~~tsl~sVr~V~e~gkhCILDv~~~avk~L~~-----~~l~PivIfIkp~s~~~lk~lr~~~ 68 (333)
.+.+..+.++..+++|+.||+|......+.++. .....+.|++.+|...-.+++..|.
T Consensus 70 ~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 70 LEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 345567888999999999999965442222221 1123467888887654455666664
No 126
>KOG2856|consensus
Probab=43.87 E-value=9 Score=38.73 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=44.2
Q ss_pred ccccceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCc
Q psy9829 84 FPVGSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGV 152 (333)
Q Consensus 84 qE~G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv 152 (333)
.+-...||..-+-| |.++|. |.+-+..- .| +++.|+|+|....++.||.||.| ++-+-|-.|-
T Consensus 387 ~~s~np~~~t~~nG-dsnPfd--d~a~~g~~-v~--vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGW 450 (472)
T KOG2856|consen 387 DESPNPFGWTPSNG-DSNPFD--DDAKGGDF-VR--VRALYDYAGQEGDELSFKAGDELEKLEEEDEQGW 450 (472)
T ss_pred cccCCCCCcCCCCC-CCCCCc--ccccCCce-ee--EEeeeccCcccccchhhccccHhhhcCCcccccc
Confidence 34466889888888 888884 44332221 23 67789999999999999999997 4545554443
No 127
>PRK03818 putative transporter; Validated
Probab=42.75 E-value=1e+02 Score=32.65 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=24.3
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEeC
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKIN 252 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~IN 252 (333)
+++|..|.-++..-.+..|-+|+.||+++-+-
T Consensus 316 Gv~VlaI~R~g~~l~~~~d~~Lq~GD~LlVvG 347 (552)
T PRK03818 316 GVVISRLNRAGVELVASPDLSLQFGDILNLVG 347 (552)
T ss_pred CeEEEEEeECCeecCCCCCCEEecCCEEEEEE
Confidence 57888888775444456688999999999863
No 128
>PRK04972 putative transporter; Provisional
Probab=41.59 E-value=1.2e+02 Score=32.10 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=23.4
Q ss_pred eEEEEEEccCcccCccccCCCCCCCCEEEEe
Q psy9829 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKI 251 (333)
Q Consensus 221 ~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~I 251 (333)
+++|..|.-+...-....|-+|+.||+++-.
T Consensus 328 gv~Vl~I~R~g~~~~~~~~~~L~~GD~LlVv 358 (558)
T PRK04972 328 GCFLNRVIRSQIEMPIDDNVVLNKGDVLQVS 358 (558)
T ss_pred CeEEEEEecCCcccCCCCCCEecCCCEEEEE
Confidence 5888888875443445568889999999876
No 129
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=41.53 E-value=44 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEE
Q psy9829 240 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 277 (333)
Q Consensus 240 g~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L 277 (333)
+.+.+||+|+-|+-.-+.+-|..+|.++++.++-.+.-
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~ 154 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKY 154 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEE
Confidence 46778999999999999999999999999999876543
No 130
>KOG2199|consensus
Probab=40.81 E-value=18 Score=37.03 Aligned_cols=25 Identities=28% Similarity=0.675 Sum_probs=23.1
Q ss_pred cccccCCCCCCCCccccccCCEEEE
Q psy9829 120 HLTHFNYDQPEKGEMSFRKGDVFHV 144 (333)
Q Consensus 120 ~a~~~~~~gpa~g~l~lr~gD~I~V 144 (333)
+++.|+++.+.+++|+|+.||+|.|
T Consensus 218 VRALYDFeAaE~nELsFkaGdIItV 242 (462)
T KOG2199|consen 218 VRALYDFEAAEDNELSFKAGDIITV 242 (462)
T ss_pred hhhhhcccccCCCccceecCcEEEE
Confidence 5678999999999999999999998
No 131
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=35.40 E-value=39 Score=22.53 Aligned_cols=23 Identities=39% Similarity=0.873 Sum_probs=18.7
Q ss_pred cccCCCCCCCCccccccCCEEEE
Q psy9829 122 THFNYDQPEKGEMSFRKGDVFHV 144 (333)
Q Consensus 122 ~~~~~~gpa~g~l~lr~gD~I~V 144 (333)
+.++|....++.+.|++||.+.+
T Consensus 4 a~~~~~~~~~~~l~~~~Gd~v~v 26 (54)
T cd00174 4 ALYDYDARDPDELSFKKGDIIEV 26 (54)
T ss_pred EEEeeCCCCCCCCCCCCCCEEEE
Confidence 34667777788899999999877
No 132
>KOG3812|consensus
Probab=33.89 E-value=93 Score=31.48 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=44.1
Q ss_pred EEEEec-CccccccccccccccEEEEEecCchhhHHhh-hcCCCcchhhHHHHH---hhccccccceeeEEEe
Q psy9829 28 HGLLDI-TPNAVDRLNYAQFYPIVIFLRAETKSNVKEL-RAGIPKYHTNLARQR---SRVLFPVGSTFVGSVL 95 (333)
Q Consensus 28 hCILDv-~~~avk~L~~~~l~PivIfIkp~s~~~lk~l-r~~~~Es~~ki~~ra---er~~qE~G~~~g~~i~ 95 (333)
-.+||. ..+.=.+|....|-||++|||..|.+.|.+| |.+.+...+-++.+. ++..|+.-.+|...+-
T Consensus 264 LvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~Fdvild 336 (475)
T KOG3812|consen 264 LVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILD 336 (475)
T ss_pred EEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeec
Confidence 345553 2223346777889999999999999888866 334444444454443 5566777777776653
No 133
>PRK15279 type III secretion protein SopE; Provisional
Probab=31.86 E-value=9 Score=35.35 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred CcccccCCCCCCCCccccccCCE---E--EEceeeccCc
Q psy9829 119 SHLTHFNYDQPEKGEMSFRKGDV---F--HVIDTLHNGV 152 (333)
Q Consensus 119 ~~a~~~~~~gpa~g~l~lr~gD~---I--~Vnd~dv~gv 152 (333)
..+|||+.+++++|+.-|-.+|+ + +.|++|..|-
T Consensus 61 ~~~ThfhRG~AsegRavLt~k~VK~fmlq~L~sldirg~ 99 (240)
T PRK15279 61 SSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGS 99 (240)
T ss_pred CCCceeecCccccccccCChHHHHHHHHHHhhhhcccCc
Confidence 35799999999999988888876 2 6888888764
No 134
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=28.96 E-value=44 Score=25.54 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHh
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDS 270 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~ 270 (333)
.+++||-||-=.|..++-++.+||+.+++.
T Consensus 37 ~v~~Gd~VLVHaG~Ai~~ideeeA~e~l~~ 66 (68)
T PF01455_consen 37 DVKVGDYVLVHAGFAIEKIDEEEAEETLDL 66 (68)
T ss_dssp SB-TT-EEEEETTEEEEEE-HHHHHHHHHH
T ss_pred CCCCCCEEEEecChhheeCCHHHHHHHHHH
Confidence 388999999999999999999999998863
No 135
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.60 E-value=97 Score=28.17 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE---EEEecc
Q psy9829 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS---LTIRRE 282 (333)
Q Consensus 242 L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~---L~V~R~ 282 (333)
+.+||+++-|+-.-+.+-|..+|.++++.++..+. ..|.|.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~ 157 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKS 157 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEec
Confidence 67899999999999999999999999999987653 345565
No 136
>KOG3542|consensus
Probab=28.11 E-value=36 Score=37.31 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=44.8
Q ss_pred cceeeEEEecccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcc--hhhhhhhhcC
Q psy9829 87 GSTFVGSVLGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVV--GSWQVFRIAH 163 (333)
Q Consensus 87 G~~~g~~i~gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~--~a~~alr~~g 163 (333)
...|-|...||... -.||||..|.||+-| |+. +||-||.| -||+....+++ .|++.|+..
T Consensus 547 e~pl~f~L~GGsEk------GfgifV~~V~pgskA--------a~~--GlKRgDqilEVNgQnfenis~~KA~eiLrnn- 609 (1283)
T KOG3542|consen 547 EDPLMFRLVGGSEK------GFGIFVAEVFPGSKA--------ARE--GLKRGDQILEVNGQNFENISAKKAEEILRNN- 609 (1283)
T ss_pred cCCceeEeccCccc------cceeEEeeecCCchH--------HHh--hhhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence 34677788887643 358999999999876 333 46999995 68887777774 334444421
Q ss_pred CceEEEEEE
Q psy9829 164 NCISAQIKR 172 (333)
Q Consensus 164 ~~v~L~v~R 172 (333)
-.++|.||-
T Consensus 610 thLtltvKt 618 (1283)
T KOG3542|consen 610 THLTLTVKT 618 (1283)
T ss_pred ceEEEEEec
Confidence 124555543
No 137
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.71 E-value=1.1e+02 Score=28.43 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=36.0
Q ss_pred CCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE---EEEecc
Q psy9829 240 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS---LTIRRE 282 (333)
Q Consensus 240 g~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~---L~V~R~ 282 (333)
|...+|++|+-|.-..|-+.|.-||..+|+..+..|. ..|.|+
T Consensus 107 G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~ 152 (201)
T COG0461 107 GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ 152 (201)
T ss_pred ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc
Confidence 4455899999999999999999999999999888664 345665
No 138
>PRK08356 hypothetical protein; Provisional
Probab=25.68 E-value=25 Score=31.30 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=17.5
Q ss_pred cEEEEEecCchhhHHhhhcCCCc
Q psy9829 48 PIVIFLRAETKSNVKELRAGIPK 70 (333)
Q Consensus 48 PivIfIkp~s~~~lk~lr~~~~E 70 (333)
..+|||.+|.....++++.|..+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~ 138 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAE 138 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCc
Confidence 57899999876667788777654
No 139
>KOG2921|consensus
Probab=25.25 E-value=80 Score=32.50 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=42.9
Q ss_pred cccCCCCCCCCCCceEeEecCCCCcccccCCCCCCCCccccccCCEE-EEceeeccCcchhhhhhhh
Q psy9829 96 GARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVF-HVIDTLHNGVVGSWQVFRI 161 (333)
Q Consensus 96 gg~d~p~~~~~D~~i~is~i~~g~~a~~~~~~gpa~g~l~lr~gD~I-~Vnd~dv~gv~~a~~alr~ 161 (333)
+=.=.|-|++ -.|+-|+.|.. .-|.-|..+|.+||.| .+++..|+.+.+=|..++.
T Consensus 209 pViLsPfya~-g~gV~Vtev~~---------~Spl~gprGL~vgdvitsldgcpV~~v~dW~ecl~t 265 (484)
T KOG2921|consen 209 PVILSPFYAH-GEGVTVTEVPS---------VSPLFGPRGLSVGDVITSLDGCPVHKVSDWLECLAT 265 (484)
T ss_pred hHhhchhhhc-CceEEEEeccc---------cCCCcCcccCCccceEEecCCcccCCHHHHHHHHHh
Confidence 3344577774 58999999988 4577887789999996 7999999998655556654
No 140
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=24.96 E-value=1.3e+02 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCce
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 275 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v 275 (333)
.+..|++|+-|+-.-+.|-|..+|.++|+..+-.+
T Consensus 114 ~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 114 LFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVV 148 (206)
T ss_pred ccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 35689999999999999999999999999987654
No 141
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=24.20 E-value=1.1e+02 Score=31.97 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=39.2
Q ss_pred ccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEE---EEeccC
Q psy9829 237 AGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL---TIRREV 283 (333)
Q Consensus 237 a~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L---~V~R~~ 283 (333)
-..|.+.+||+|+-|+-.-+.+.|..||.++++..+-.|.- .|.|..
T Consensus 385 ~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~ 434 (477)
T PRK05500 385 LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ 434 (477)
T ss_pred eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc
Confidence 34678999999999999999999999999999998876643 355653
No 142
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=23.46 E-value=1.3e+02 Score=26.97 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCce
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKL 275 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v 275 (333)
.+..|++++-|+-.-+.+-|..+|.++|++.+-.+
T Consensus 103 ~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~v 137 (176)
T PRK13812 103 RLDEGEEVVVLEDIATTGQSAVDAVEALREAGATV 137 (176)
T ss_pred cCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeE
Confidence 57789999999999999999999999999988664
No 143
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=22.95 E-value=2e+02 Score=26.01 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=32.0
Q ss_pred HcC-CEEEEecCccccccccccccccEEEEEecCchhhHHhhhcCCCcchhhHHHHH
Q psy9829 24 DRG-RHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQR 79 (333)
Q Consensus 24 e~g-khCILDv~~~avk~L~~~~l~PivIfIkp~s~~~lk~lr~~~~Es~~ki~~ra 79 (333)
+++ +.+++|+. -+........+..+|+|.+|....++++..|...+.+.+..|.
T Consensus 112 ~~~~~vvv~e~p--LL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri 166 (208)
T PRK14731 112 RRGKRILVKEAA--ILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRRI 166 (208)
T ss_pred hcCCCEEEEEee--eeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344 45666644 2222222345578899999888888888777555444444444
No 144
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=22.08 E-value=1.4e+02 Score=26.26 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=32.0
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS 276 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~ 276 (333)
.+.+|++|+-|+-....+-|..+|.++|+.++..+.
T Consensus 104 ~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~ 139 (173)
T TIGR00336 104 ELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVA 139 (173)
T ss_pred CCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEE
Confidence 467899999999999999999999999999877653
No 145
>PHA02757 hypothetical protein; Provisional
Probab=21.04 E-value=90 Score=24.11 Aligned_cols=28 Identities=7% Similarity=0.293 Sum_probs=22.7
Q ss_pred eehHHHHHHHHcCCEEEEecCccccccc
Q psy9829 14 IRLSAIRDMMDRGRHGLLDITPNAVDRL 41 (333)
Q Consensus 14 tsl~sVr~V~e~gkhCILDv~~~avk~L 41 (333)
+.-..+++++++.|.||+.+++.+=..+
T Consensus 33 v~Qe~~~eildkdK~CiiE~de~sGml~ 60 (75)
T PHA02757 33 VDQEKANEILDKDKACIIEIDEDSGMLF 60 (75)
T ss_pred ccHHHHHHHhcccceEEEEEcCCCCcEE
Confidence 3667899999999999999998754433
No 146
>KOG1945|consensus
Probab=20.51 E-value=68 Score=32.38 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=57.8
Q ss_pred cccccccCeEEEEEEccCcccCccccCCCCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceEEEEecc
Q psy9829 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282 (333)
Q Consensus 213 d~G~~l~~~IfI~~I~~g~~ag~Aa~dg~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~L~V~R~ 282 (333)
++|+.. .+||++.+.+| +.-.++++-.+-|......+..+..|.-.-+....+.+...+++..-+.
T Consensus 124 k~~~~e-~~~~~~sa~sg---~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~~n~~s~~~ 189 (377)
T KOG1945|consen 124 KSGLEE-LGIFVKSATSG---GAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSRVNFTSPTE 189 (377)
T ss_pred hccchh-hcceeeccccc---ccccccccccccccccccccCCCCCcchhhhhcccccchhccCCcccch
Confidence 556544 37999999999 9999999999999999999999999999999999999999988876443
No 147
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=20.47 E-value=1.4e+02 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.0
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHh
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDS 270 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~ 270 (333)
..++||-||-=.|...+-++.+||+..++.
T Consensus 35 ~~~vGD~VLVH~G~Ai~~ide~eA~e~l~~ 64 (76)
T TIGR00074 35 EVKVGDYVLVHVGFAISVLDEEEARETLDA 64 (76)
T ss_pred CCCCCCEEEEecChhhhhCCHHHHHHHHHH
Confidence 477999999999999999999999998864
No 148
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=20.01 E-value=1.6e+02 Score=26.70 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCceE
Q psy9829 241 QLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLS 276 (333)
Q Consensus 241 ~L~~GD~Il~ING~~~~~~s~~eA~~~l~~s~~~v~ 276 (333)
.+.+||+|+-|+-.-+.+-|..++.++++..+..+.
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vv 148 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVA 148 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEE
Confidence 366899999999999999999999999999987653
Done!