RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9829
(333 letters)
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 75.0 bits (185), Expect = 2e-17
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ LG++IFVKE+T + L EGD++LKIN T+ MS+ +ARKLI+ S+
Sbjct: 14 EYGLRLGSQIFVKEMTR---TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR 70
Query: 273 EKLSLTIRREVPRPTAYQ 290
KL L + R++ +
Sbjct: 71 GKLQLVVLRDLEHHHHHH 88
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 73.6 bits (181), Expect = 9e-17
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ L + IFVKE++ ++ +A + EGDV+LKIN T+ MS+ +A+ LI+ SK
Sbjct: 16 EYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 72
Query: 273 EKLSLTIRREVPRPT 287
KL + ++R+
Sbjct: 73 GKLKMVVQRDERATL 87
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 72.7 bits (179), Expect = 1e-16
Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
++G+ L + IFVKE++ ++ +A + EGDV+LKIN T+ MS+ +A+ LI+ SK
Sbjct: 14 EYGLRLASHIFVKEIS---QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK 70
Query: 273 EKLSLTIRRE 282
KL + ++R+
Sbjct: 71 GKLKMVVQRD 80
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 71.1 bits (173), Expect = 8e-14
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
+E + ++R++ ++G+H +LD++ NAV RL A +PI IF+R + N
Sbjct: 595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLEN 654
Query: 61 VKELRAGI 68
V E+ I
Sbjct: 655 VLEINKRI 662
Score = 47.2 bits (111), Expect = 4e-06
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
IF+ ++ A+A +L D +L +N ++ A + + + + L
Sbjct: 88 DPSIFITKIIP---GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 144
Query: 279 IRREVPRPTAYQESTTLPGKENNYMDPLSTNYS-----SQNLYVQPPTRGGP 325
+ R P E + G + + ++YV GG
Sbjct: 145 VMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGA 196
Score = 41.4 bits (96), Expect = 3e-04
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK 274
G G IF+ + + + +L +GD +L +N S ++A + ++ +
Sbjct: 326 GGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT 382
Query: 275 LSLTIRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQN 314
+++ + + P + E+ +E L + +S
Sbjct: 383 VTIIAQYK-PEEYSRFEAKIHDLREQLMNSSLGSGTASLR 421
Score = 35.7 bits (81), Expect = 0.023
Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
N I+V ++ A+ +L GD +L +N+ + + ++A + ++ + + L
Sbjct: 183 DNSIYVTKIIE---GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK 239
Query: 279 IRREVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTR 322
+ + + + + ++SS P
Sbjct: 240 VAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAM 283
Score = 33.0 bits (74), Expect = 0.14
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 122 THFNYDQPEK-----GEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNC-------ISAQ 169
F+YD+ + +SFR GDV HVID G WQ R+ + I ++
Sbjct: 432 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDA---GDEEWWQARRVHSDSETDDIGFIPSK 488
Query: 170 IKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILG 219
+ + + + + G L V +V IILG
Sbjct: 489 RRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILG 538
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 69.9 bits (170), Expect = 1e-13
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
+ ++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL ++K
Sbjct: 264 PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQG 323
Query: 61 VKELRAGIPK 70
VK +R +
Sbjct: 324 VKTMRMRLCP 333
Score = 55.2 bits (132), Expect = 1e-08
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
+ + RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 101 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIG 151
Score = 53.3 bits (127), Expect = 4e-08
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
Y + + THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 94 VYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 153
Score = 40.2 bits (93), Expect = 6e-04
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
+ GN IFV V ++ A L EGD +L++NN + +EA +
Sbjct: 23 LRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 78
Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKENNYM 303
+ +TI + + Y+ ++ Y+
Sbjct: 79 PKGEEVTILAQ-KKKDVYRRIVESDVGDSFYI 109
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 68.4 bits (166), Expect = 5e-13
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 MMEESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSN 60
+ ++ SGIIRL I+ ++D+ +H LLD+TPNAVDRLNYAQ+YPIV+FL ++K
Sbjct: 256 PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQG 315
Query: 61 VKELRAGIPK 70
VK +R +
Sbjct: 316 VKTMRMRLCP 325
Score = 54.9 bits (131), Expect = 1e-08
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 162 AHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
+ + RTHF Y++ +SF KG+VF V+DTL+NG +GSW RI
Sbjct: 92 ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIG 143
Score = 54.2 bits (129), Expect = 3e-08
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
Y + + THF Y++ +SF KG+VF V+DTL+NG +GSW RI N
Sbjct: 86 VYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKN 145
Score = 38.0 bits (87), Expect = 0.004
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
+ GN IFV V ++ A L EGD +L++NN + +EA +
Sbjct: 15 LRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 70
Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKENNYMDP 305
+ +TI + + Y+ ++ Y+
Sbjct: 71 PKGEEVTILAQ-KKKDVYRRIVESDVGDSFYIRT 103
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 61.3 bits (149), Expect = 5e-11
Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 14 IRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAG 67
++++R++ ++G+H +LD++ NA+ RL AQ YP+ +F++ ++ +V E+
Sbjct: 177 TSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRR 230
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 172 RTHFNYD------QPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
R F+YD P +G + F+ GD+ HV + + WQ R+
Sbjct: 9 RALFDYDPNRDDGLPSRG-LPFKHGDILHVTNASDD---EWWQARRVL 52
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 122 THFNYD------QPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
F+YD P +G + F+ GD+ HV + + WQ R+ +
Sbjct: 10 ALFDYDPNRDDGLPSRG-LPFKHGDILHVTNASDD---EWWQARRVLGD 54
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 56.6 bits (137), Expect = 9e-11
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + R+ + A L GDV+ I+ T M+ EA+ I
Sbjct: 17 FRLVGGKDFEQPLAIS----RVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIK 72
Query: 270 SSKEKLSLTIRREVPR 285
+ L+LT+ R
Sbjct: 73 GCTDNLTLTVARSEHE 88
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 56.2 bits (136), Expect = 2e-10
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + +T A +A GD +L I+ ++ EA+ I
Sbjct: 17 FRLQGGKDFNVPLSISRLT----PGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIR 72
Query: 270 SSKEKLSLTIRREVPR 285
+ E+LSL + R +
Sbjct: 73 ACGERLSLGLSRAITS 88
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 56.2 bits (136), Expect = 2e-10
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + + A + GDV+L I+ GM+ EA+ I
Sbjct: 19 FRLQGGKDFNMPLTISSLKD----GGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74
Query: 270 SSKEKLSLTIRREVPRPTAYQESTT 294
+ L++T++R + S+
Sbjct: 75 ACTGSLNMTLQRASAAAKSEPVSSG 99
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 55.7 bits (135), Expect = 2e-10
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + + A + GDV+L I+ GM+ EA+ I
Sbjct: 17 FRLQGGKDFNMPLTISSLKD----GGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Query: 270 SSKEKLSLTIRRE 282
L++T++RE
Sbjct: 73 GCTGSLNMTLQRE 85
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 59.0 bits (143), Expect = 3e-10
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 15 RLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELR 65
+ ++R++ ++G+H +LD++ NAV RL A +PI IF+R + NV E+
Sbjct: 183 SVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233
Score = 43.2 bits (102), Expect = 6e-05
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 172 RTHFNYDQ------PEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID 213
R F+YD+ + +SFR GDV HVID G WQ R+
Sbjct: 5 RALFDYDKTKDCGFLSQA-LSFRFGDVLHVIDA---GDEEWWQARRVH 48
Score = 40.5 bits (95), Expect = 5e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 122 THFNYDQ------PEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHN 164
F+YD+ + +SFR GDV HVID G WQ R+ +
Sbjct: 6 ALFDYDKTKDCGFLSQA-LSFRFGDVLHVIDA---GDEEWWQARRVHSD 50
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 54.9 bits (133), Expect = 4e-10
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + +T + A QL++GD+++ I+ TD M+ EA+ I
Sbjct: 15 FRLQGGKDFNMPLTISRIT----PGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70
Query: 270 SSKEKLSLTIRR 281
S+ LSLT+++
Sbjct: 71 SASYNLSLTLQK 82
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 57.5 bits (139), Expect = 4e-10
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
G+ + + ++ + + T L GD LL I+N D S+++A +++ ++ + L
Sbjct: 134 GDPLVISDIKK---GSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190
Query: 279 IRRE 282
IR++
Sbjct: 191 IRKD 194
Score = 41.7 bits (98), Expect = 1e-04
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 212 IDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
+ L + + + ++ + L GD ++ IN PT+ + +EA +L+ S
Sbjct: 28 VFATETLSSPPLISYIEA---DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 84
Query: 272 KEKLSLTIRREVPRP 286
+T+ E
Sbjct: 85 SITSKVTLEIEFDVA 99
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 54.6 bits (132), Expect = 5e-10
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G I V +V A L GD+++ IN +GM EA+ I
Sbjct: 16 FRITGGRDFHTPIMVTKVA----ERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR 71
Query: 270 SSKEKLSLTIRR 281
S L L + R
Sbjct: 72 QSPSPLRLQLDR 83
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 55.1 bits (133), Expect = 5e-10
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ GI + + +T + A L GDV+L I+ T+ M+ +A+ I
Sbjct: 19 FRLSGGIDFNQPLVITRITP----GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK 74
Query: 270 SSKEKLSLTIRREVPRP 286
++ +L L I R R
Sbjct: 75 AASYQLCLKIDRAETRL 91
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 58.7 bits (141), Expect = 5e-10
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 4 ESDSKKCSGIIRLSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKE 63
S + S II+L +R + ++ +H LLD+TP+A++RLNY Q+YPIV+F E++ +K
Sbjct: 176 VSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKA 235
Query: 64 LRAGIPK 70
LR +
Sbjct: 236 LRQWLAP 242
Score = 51.7 bits (123), Expect = 9e-08
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVV------GSWQVFRID 213
RTHF + + F +GDVFHV+DTLH G G W R+
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMG 55
Score = 48.3 bits (114), Expect = 1e-06
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 122 THFNYDQPEKGEMSFRKGDVFHVIDTLHNGVV------GSWQ 157
THF + + F +GDVFHV+DTLH G G W
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWL 50
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 54.2 bits (131), Expect = 7e-10
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FR+ G + + V + A L GD++ IN T+ M+ EA+ I
Sbjct: 22 FRLVGGRDFSAPLTISRVHA----GSKAALAALCPGDLIQAINGESTELMTHLEAQNRIK 77
Query: 270 SSKEKLSLTIRR 281
+ L+L++
Sbjct: 78 GCHDHLTLSVSS 89
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 53.5 bits (129), Expect = 2e-09
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G I V +VT A L GD+++ IN + M EA+ I
Sbjct: 20 FRISGGRDFHTPIIVTKVT----ERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR 75
Query: 270 SSKEKLSLTIRRE 282
S L L + R
Sbjct: 76 QSASPLRLQLDRS 88
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 54.0 bits (130), Expect = 7e-09
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V ++ A+ +L GD +L +N+ + + ++A + ++ + + L + +
Sbjct: 132 IYVTKIIE---GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
Query: 282 EVPRPTA 288
T
Sbjct: 189 PSNAETM 195
Score = 46.3 bits (110), Expect = 3e-06
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 205 GSWQVFRID-------FGIIL-----------GNKIFVKEVTHRLDNNASAGTHQLAEGD 246
GS + I G + IF+ ++ + A+A +L D
Sbjct: 2 GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKI---IPGGAAAQDGRLRVND 58
Query: 247 VLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPGKE 299
+L +N ++ A + + + + L + R P E + G +
Sbjct: 59 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 52.0 bits (125), Expect = 3e-08
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + V + + GD LL ++ G + EA ++ ++ +L I
Sbjct: 137 VVITCVRP---GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY 193
Query: 282 EVP 284
+V
Sbjct: 194 DVS 196
Score = 45.9 bits (109), Expect = 5e-06
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
+ GI K V + +A + QL GD + +N E L+
Sbjct: 23 LTVSGGIDKDGKPRVSNL---RQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79
Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLPGKE 299
+ E++ L + E+P + S E
Sbjct: 80 NVGERVVLEVEYELPPVSIQGSSVMFRTVE 109
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 50.1 bits (120), Expect = 5e-08
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
TL I G +++ +V DN +A +A GD + +N
Sbjct: 24 TLQKDAQNLIG-ISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLPG 297
G + E K+I K ++++ + P + PG
Sbjct: 80 GKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 49.2 bits (118), Expect = 6e-08
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ V+ + L + + +L GD++L IN T G++ +A + I + +L L IRR
Sbjct: 40 LAVRGL---LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
Query: 282 EVPRPTA 288
+ P++
Sbjct: 97 PLSGPSS 103
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 48.1 bits (115), Expect = 1e-07
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F + G+ + V ++ D +A + ++ GD L+ IN P G +EA LI
Sbjct: 25 FTLKGGLEHCEPLTVSKIE---DGGKAALSQKMRTGDELVNINGTPLYGSR-QEALILIK 80
Query: 270 SSKEKLSLTIRREVPRPTA 288
S L L +RR P++
Sbjct: 81 GSFRILKLIVRRRNSGPSS 99
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 47.4 bits (113), Expect = 2e-07
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 213 DFGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
D+G + + V VT +A L GD +L++NN P + +S + A ++
Sbjct: 22 DYGFHISESLPLTVVAVTA--GGSAHGK---LFPGDQILQMNNEPAEDLSWERAVDILRE 76
Query: 271 SKEKLSLTIRREVPRP 286
+++ LS+T+ R
Sbjct: 77 AEDSLSITVVRCTSSG 92
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 49.5 bits (118), Expect = 3e-07
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ ++ +L GD++ K N +G+ + L + K+S+ + R
Sbjct: 138 CTIADLIQ---GQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194
Query: 282 EVPRPTAYQES 292
P+PT E+
Sbjct: 195 --PKPTLRTEA 203
Score = 29.9 bits (67), Expect = 0.87
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 218 LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSV---KEARKLIDSSKEK 274
+ + V A +L D + IN P S+ K + + ++
Sbjct: 43 VTTGCVITHV---YPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKA 99
Query: 275 LSLTIRREVPRPTAYQ 290
++LT+ R P
Sbjct: 100 VTLTVFRADPPELEKF 115
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ ++ + A+A +L D +L++N + A + + + + L +RR
Sbjct: 36 IFITKI---IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRR 92
Query: 282 EVPRPTAYQ 290
P P
Sbjct: 93 RQPPPEETS 101
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 46.9 bits (112), Expect = 3e-07
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 191 DVFHVIDTLHNGVVGSWQVFRIDFGIILGNK-----IFVKEVTHRLDNNASAGTHQLAEG 245
++ V LH G GI L + +F+ ++ L+ +A +L+
Sbjct: 3 EILQV--ALHKRDSGE------QLGIKLVRRTDEPGVFILDL---LEGGLAAQDGRLSSN 51
Query: 246 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 284
D +L IN H + + A ++I +S E+++LTI R
Sbjct: 52 DRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGK 90
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 47.0 bits (112), Expect = 3e-07
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 214 FGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
G+ + N+ + ++ + +L GD++ K N +G+ + L
Sbjct: 16 LGLSLSPNEIGCTIADL---IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72
Query: 271 SKEKLSLTIRREVPRPTAYQESTTLP 296
+ K+S+ + R P+P + + +P
Sbjct: 73 ANGKVSMEVTR--PKPGSGGSGSLVP 96
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 46.1 bits (110), Expect = 5e-07
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 214 FGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
G+ + N+ + ++ +L GD++ K N +G+ + + L
Sbjct: 22 LGLSLSPNEIGCTIADLIQ---GQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78
Query: 271 SKEKLSLTIRREVPRPTAY 289
+ K+S+ + R P+P A
Sbjct: 79 ANGKVSMEVTR--PKPAAA 95
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 46.6 bits (111), Expect = 6e-07
Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V ++ ++ A+ +L GD LL +N+ + ++ +EA + ++ + + L + +
Sbjct: 35 IYVTKI---IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
Query: 282 EVPRPTAYQES 292
+
Sbjct: 92 PTSMYISRHHH 102
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 46.6 bits (111), Expect = 6e-07
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 185 MSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK-----IFVKEVTHRLDNNASAG 238
+ F+ D + V L G G FG + G + ++V + ++ +
Sbjct: 18 LYFQSMDFYTV--ELERGAKG--------FGFSLRGGREYNMDLYVLRLA---EDGPAER 64
Query: 239 THQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPR 285
+ ++ GD +L+IN T M A +LI + ++ L ++R
Sbjct: 65 SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETS 111
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 46.7 bits (111), Expect = 7e-07
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + + + + L GD +L I+ + S+ EA KL+ S EK+ L I
Sbjct: 44 ITIDRIKP---ASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100
Query: 282 EVPRPTAYQESTTLP 296
+ S+
Sbjct: 101 VPQSQRPLRPSSGPS 115
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 46.1 bits (110), Expect = 7e-07
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + EV + A+ +L GD +L++N + EA ++ + +++ LT+ R
Sbjct: 32 IIIHEV---YEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYR 88
Query: 282 EVP 284
+
Sbjct: 89 DEA 91
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 45.8 bits (109), Expect = 8e-07
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK-----IFVKEVTHRLDNNASAGT 239
S + D F V + G G FG I G + ++V + ++ +
Sbjct: 6 SGQDFDYFTV--DMEKGAKG--------FGFSIRGGREYKMDLYVLRLA---EDGPAIRN 52
Query: 240 HQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAY 289
++ GD +++IN T M+ A +LI S ++ L ++R +
Sbjct: 53 GRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 45.8 bits (109), Expect = 9e-07
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFV ++ +D+ +A L D ++++N + +A + ++KE + + + R
Sbjct: 43 IFVSKI---VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
Query: 282 EVPRP 286
P
Sbjct: 100 RTSGP 104
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 45.6 bits (109), Expect = 1e-06
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK V + A+ ++ +GD +L +N +G + K+A + + ++ + + L + +
Sbjct: 35 IYVKAV---IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91
Query: 282 EVPRPT 287
PT
Sbjct: 92 GQS-PT 96
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 190 GDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK---IFVKEVTHRLDNNASAGTHQLAEG 245
G V V L N G G I+G K + V+ + + + +L G
Sbjct: 14 GHVEEV--ELINDGSG--------LGFGIVGGKTSGVVVRTI---VPGGLADRDGRLQTG 60
Query: 246 DVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 294
D +LKI GM+ ++ +++ + + + + R+ + +
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPS 109
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 45.5 bits (108), Expect = 1e-06
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V + +N A+A +L EGD +L +N + ++A L ++ +SL ++
Sbjct: 49 IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105
Query: 282 EVPRPTA 288
+
Sbjct: 106 RLQVQNG 112
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 45.4 bits (108), Expect = 1e-06
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ V+ A + GD LL++N G EA + + + + + + R
Sbjct: 48 IFISRVSE----EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
Query: 282 EVPRPTA 288
E +
Sbjct: 104 ESGPSSG 110
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V + +N A+A +L EGD +L +N + ++A L ++ +SL ++
Sbjct: 39 IYVSRI---KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Query: 282 EVP 284
+
Sbjct: 96 RLE 98
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 45.0 bits (107), Expect = 2e-06
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+K V L+++ + L GD +++++ S ++A + I + + ++
Sbjct: 41 IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
Query: 282 EVPRP 286
+
Sbjct: 98 IISTR 102
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFV + + A+ L GD +L IN A L+ ++ ++L + R
Sbjct: 40 IFVSRI---AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
Query: 282 EVPRPTAY 289
E +
Sbjct: 97 EAGSGPSS 104
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 45.0 bits (107), Expect = 2e-06
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK V + A+ ++ +GD +L +N +G + K+A + + ++ + + L + +
Sbjct: 44 IYVKAV---IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 100
Query: 282 EVPRP 286
Sbjct: 101 GQSPT 105
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 45.6 bits (108), Expect = 2e-06
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 189 KGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNK----IFVKEVTHRLDNNASAGTHQLAE 244
KG H L G F ++ G++ + +K + + + +A ++
Sbjct: 16 KGKFIHT--KLRKSSRG------FGFTVVGGDEPDEFLQIKSL---VLDGPAALDGKMET 64
Query: 245 GDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 294
GDV++ +N+ G + + K+ S + L + R P P + T
Sbjct: 65 GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNT 116
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 45.0 bits (107), Expect = 2e-06
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ + +A T +L GD ++ I T+GM+ +A L+ ++ + + +
Sbjct: 55 IFIAMM---HPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111
Query: 282 EVPRPTA 288
Sbjct: 112 GGDVSET 118
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 45.1 bits (107), Expect = 2e-06
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
++ ++ L ++ T +L EG +L+ N P + +E + +I + + +R
Sbjct: 51 AYIAKI---LPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107
Query: 282 EVPRPT 287
++
Sbjct: 108 DLNMSG 113
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
++++ + L + +A +L+ GD +L++N G+ A LI +K+ + +
Sbjct: 38 LYIQTL---LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94
Query: 282 EVPRPTAYQESTT 294
S
Sbjct: 95 SDVETAKKIHSGP 107
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/63 (19%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK + + +A+A ++ D +L++++ GM+ + +++ ++ + L + R
Sbjct: 46 IYVKSL---IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
Query: 282 EVP 284
+P
Sbjct: 103 RLP 105
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 46.5 bits (110), Expect = 3e-06
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 19/114 (16%)
Query: 108 PSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG----- 154
P P ++ +Y++ EM+ GDV V++ G
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPAS 61
Query: 155 ------SWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
S + + Y E E+S +G+ VI L +G
Sbjct: 62 FLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115
Score = 33.4 bits (76), Expect = 0.064
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ + + ++ Y E E+S +G+ VI L +G
Sbjct: 71 ETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 44.7 bits (106), Expect = 3e-06
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFVK V + A+ ++ D+L++++ G++ A ++ ++K ++ I R
Sbjct: 37 IFVKTV---TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 93
Query: 282 EVPRPTAYQEST 293
E P +
Sbjct: 94 ERPGEQSEVAQL 105
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 44.0 bits (104), Expect = 3e-06
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 213 DFGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
DFG I + IFV V + + A QL D ++ INN KE + +
Sbjct: 18 DFGFTIKWDIPGIFVASV----EAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMA 73
Query: 270 SSKE--KLSLTIRR 281
++E L + +RR
Sbjct: 74 KAQETGHLVMDVRR 87
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 44.7 bits (106), Expect = 3e-06
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 189 KGDVFHVIDTLHNGVVGSWQVFRIDFGI-ILGNK------IFVKEVTHRLDNNASAGTHQ 241
G++ + L G G+ + GNK IFV + +A +
Sbjct: 23 PGELHII--ELEKDKNG--------LGLSLAGNKDRSRMSIFVVGI---NPEGPAAADGR 69
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRP 286
+ GD LL+INN G S + A +I ++ K+ L R
Sbjct: 70 MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 44.2 bits (105), Expect = 3e-06
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFVK V + A+ ++ D +++++ G++ A ++ ++K + I R
Sbjct: 42 IFVKTV---TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
Query: 282 EVPRPTAY 289
E P +
Sbjct: 99 EKPSGPSS 106
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 44.4 bits (105), Expect = 3e-06
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
TL I G +++ +V DN +A +A GD + +N
Sbjct: 29 TLQKDAQNLIG-ISIGGGAQYCPCLYIVQV---FDNTPAALDGTVAAGDEITGVNGRSIK 84
Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVP 284
G + E K+I K ++++ +
Sbjct: 85 GKTKVEVAKMIQEVKGEVTIHYNKLQY 111
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 43.9 bits (104), Expect = 3e-06
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273
F I + + V+ V D+ A L + D +L++N P + E I S
Sbjct: 18 FTICCDSPVRVQAV----DSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS 73
Query: 274 KLSLTIRREVPRP 286
++ L + R VP+
Sbjct: 74 EIILLVWRMVPQV 86
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 4e-06
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 198 TLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTD 257
+ G F + G G IFV +V +SA L GD + ++N +
Sbjct: 15 RVEKSPAGRLG-FSVRGGSEHGLGIFVSKVEE----GSSAERAGLCVGDKITEVNGLSLE 69
Query: 258 GMSVKEARKLIDSSKEKLSLTIRREVPRPTA 288
++ A K++ SS L + +RR P++
Sbjct: 70 STTMGSAVKVLTSSSR-LHMMVRRMGSGPSS 99
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 44.3 bits (105), Expect = 4e-06
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + EV + A+A +L GD +L++N S +EA + + +K+ L + R
Sbjct: 45 IVIHEV---YEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101
Query: 282 EVPRPTAYQESTT 294
+ + +
Sbjct: 102 DEAHYRDEESGPS 114
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 43.8 bits (104), Expect = 4e-06
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
I + I + +T + T + GD +L IN+ G + EA L+
Sbjct: 20 ITISGTEEPFDPIIISSLTK---GGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Query: 270 SSKEKLSLTIRREVPRPTA 288
+ E ++L I+++ A
Sbjct: 77 MAGETVTLKIKKQTDAQPA 95
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 44.5 bits (105), Expect = 4e-06
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F + G + V V A +L EGD ++ IN + + I
Sbjct: 31 FNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88
Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLPG 297
+S E+ S + V RP A + G
Sbjct: 89 ASCERHSGELMLLV-RPNAVYDVVEESG 115
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 44.8 bits (106), Expect = 4e-06
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIR 280
+ + + AS + + GD +L++ G++ EA +I + + +++ IR
Sbjct: 59 LTINRI---FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
Query: 281 REVPRPTAYQEST 293
R+ + +
Sbjct: 116 RKSLQSKETTAAG 128
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 43.8 bits (104), Expect = 4e-06
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + V + + GD LL ++ G + EA ++ ++ +L I
Sbjct: 34 VVITSV---RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEY 90
Query: 282 EVPRPT 287
+V
Sbjct: 91 DVSETA 96
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 44.5 bits (105), Expect = 5e-06
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 203 VVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVK 262
+ V G+ IF+ + + T LA D +L++N G S+
Sbjct: 48 IRDGSSVRVTPHGLEKVPGIFISRLVP---GGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104
Query: 263 EARKLIDSSKEKLSLTIRREVPR 285
+ ++ ++ L +T+R R
Sbjct: 105 QVTDMMIANSRNLIITVRPANQR 127
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 43.9 bits (104), Expect = 5e-06
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ +V A+ +L G LL++N G++ EA +L+ S + L++ +
Sbjct: 46 IFISKV---SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102
Query: 282 EVPRP 286
Sbjct: 103 GFESG 107
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 44.0 bits (104), Expect = 5e-06
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+K+V L+++ + T+ L GD +L+++ S EA + I ++ + ++
Sbjct: 52 IFIKQV---LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
Query: 282 EVPRP 286
P
Sbjct: 109 LSSTP 113
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 43.9 bits (104), Expect = 6e-06
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V ++ +D A+ +L GD LL +NN+ + ++ +EA ++ ++ E + L + +
Sbjct: 56 IYVTKI---IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
Query: 282 EVP 284
Sbjct: 113 PTT 115
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 43.2 bits (102), Expect = 6e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFV V ++ L GD +++ N + + +A L+ + + + L I R
Sbjct: 37 IFVTRV---QPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
Query: 282 EVP 284
EV
Sbjct: 92 EVS 94
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 43.2 bits (102), Expect = 6e-06
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 218 LGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSL 277
L + + H + + L+ GD L IN G+ + + + +K + S+
Sbjct: 35 LLPTAVIANLLH---GGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSV 91
Query: 278 TIRREVPRP 286
T+ P
Sbjct: 92 TLSIVHCPP 100
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 46.1 bits (108), Expect = 7e-06
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 213 DFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
G + N I L A + G +++IN + ++ + + +S
Sbjct: 309 QLGFSVQNGIICS-----LMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 363
Query: 273 EKLSLTI-RREVPRPTAYQESTTL 295
++ + + R QE+
Sbjct: 364 GEIHMKTMPAAMFRLLTGQETPLY 387
Score = 41.5 bits (96), Expect = 2e-04
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 221 KIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLT 278
+ + + + +A + +L+ GD ++ IN G+ + + +I K ++ L
Sbjct: 233 TVILANMMN---GGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289
Query: 279 IRREVPRPT 287
I P T
Sbjct: 290 IVSCPPVTT 298
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 43.0 bits (102), Expect = 8e-06
Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFVK + ++A ++ GD ++ ++ G + ++A +++ + + + LT+ R
Sbjct: 35 IFVKSI---TKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91
Query: 282 EVP 284
Sbjct: 92 RGE 94
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 42.7 bits (101), Expect = 8e-06
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I++ ++ ++ A+ +L GD LL +NN + +EA + ++ + + L + +
Sbjct: 35 IYITKI---IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 43.2 bits (102), Expect = 8e-06
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
+ + + + A+ + L EGD +L+IN G V E L+ L+
Sbjct: 47 MDSVIISRIVK---GGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Query: 279 IRREVPRPTA 288
+ +
Sbjct: 104 LIPSSGPSSG 113
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 43.1 bits (102), Expect = 8e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + +V L + G QL E D + +N D + A + + S + +TIRR
Sbjct: 41 IVISDV---LKGGPAEG--QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Query: 282 EVPRP 286
+
Sbjct: 96 KKGGG 100
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 43.5 bits (103), Expect = 9e-06
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK V A++ +L GD ++ +N +G++ +EA ++ +K ++L +
Sbjct: 55 IYVKTV---FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111
Query: 282 EVP 284
Sbjct: 112 SDE 114
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 43.7 bits (103), Expect = 9e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
I G G I++ V + A L GD +L++N + EA +L+
Sbjct: 36 LTIRGGAEYGLGIYITGVDP----GSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK 91
Query: 270 SSKEKLSLTIRREVPRPTAYQESTTLP 296
SS+ L LT++ P A
Sbjct: 92 SSRH-LILTVKDVGRLPHARTTVDETK 117
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 43.2 bits (102), Expect = 1e-05
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)
Query: 186 SFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNK----IFVKEVTHRLDNNASAGTHQ 241
S KG TL +G F II G++ + VK V + + +A +
Sbjct: 14 SQLKGTFLST--TLKKSNMG------FGFTIIGGDEPDEFLQVKSV---IPDGPAAQDGK 62
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRREVPRPTAYQESTT 294
+ GDV++ IN G + + KL S + ++L + R P P ++
Sbjct: 63 METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I V V N ++ + +G+ +L IN G + +A ++ ++E I
Sbjct: 44 ITVHRV---FPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100
Query: 282 EVPRPTAYQESTT 294
P A + +
Sbjct: 101 RKLTPEAMPDLNS 113
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 42.8 bits (101), Expect = 1e-05
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFV V ++ L GD +++ N + + +A L+ + + + L I R
Sbjct: 45 IFVTRV---QPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
Query: 282 EVP 284
EV
Sbjct: 100 EVS 102
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 42.7 bits (101), Expect = 1e-05
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G G I + V + ++ +L GD L+ ++ P G + + L+
Sbjct: 24 FRILGGDEPGQPILIGAV---IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80
Query: 270 SSKE--KLSLTIRREVPRP 286
+ +++LT+RR+V
Sbjct: 81 HAARNGQVNLTVRRKVLSG 99
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 42.7 bits (101), Expect = 1e-05
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
G I+G + IFV + L + + +L GD +L +N + ++A +
Sbjct: 28 LGFNIVGGEDGEGIFVSFI---LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL 84
Query: 269 DSSKEKLSLTIRREVPRPTAYQESTTLPG 297
+ + +++ + + ++ S G
Sbjct: 85 KRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F I G + I++ V + + L GD LL +N +G ++A +L+
Sbjct: 20 FNIMGGKEQNSPIYISRV---IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 76
Query: 270 SSKEKLSLTIRR 281
+++ + L +R
Sbjct: 77 AAQGSVKLVVRS 88
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 42.4 bits (100), Expect = 2e-05
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+K V L+++ + L GD +++++ S ++A + I + + ++
Sbjct: 61 IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
Query: 282 EVP 284
+
Sbjct: 118 IIS 120
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
++VK + L D LL++N+ T LI S KL L I R
Sbjct: 34 VYVKNIRP----AGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 42.1 bits (99), Expect = 2e-05
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
I+ G K I+V +VT + A L GD LL+ N + ++AR +I
Sbjct: 34 ISIVSGEKGGIYVSKVTV----GSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ 89
Query: 272 KEKLSLTIRREVPRPTAYQESTT 294
+ +++ + P +Q S+
Sbjct: 90 CDTITILAQY---NPHVHQLSSH 109
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 42.9 bits (101), Expect = 3e-05
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 214 FGIIL---GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI-D 269
G+ L N IFV+ V N+ A L GD +L+IN G S +A K++
Sbjct: 18 IGLRLKSIDNGIFVQLVQA----NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 73
Query: 270 SSKEKLSLTIRR 281
+ EK+++TIR
Sbjct: 74 AFGEKITMTIRD 85
Score = 35.6 bits (82), Expect = 0.009
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 229 HRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
+ ++SA + L + +IN G+ + ++ +S +++TI
Sbjct: 112 TSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 41.6 bits (98), Expect = 3e-05
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
G I + E+ + L GD +L +N KEA ++ + ++
Sbjct: 34 GVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90
Query: 279 IRREVPRPTAYQE 291
+ +
Sbjct: 91 VVYVALEHHHHHH 103
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 41.1 bits (97), Expect = 3e-05
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + ++ A+ T L GD +L +N + EA + + + +++ L ++
Sbjct: 32 ILISKI---FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 41.2 bits (97), Expect = 3e-05
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
V + H L GD +L+IN SV + +K + +K +SL
Sbjct: 35 KQSCTVARILH---GGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK 91
Query: 279 IRR 281
+
Sbjct: 92 VIP 94
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/87 (14%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
G I+G + IF+ + L + + +L +GD +L +N S ++A +
Sbjct: 27 LGFNIVGGEDGEGIFISFI---LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83
Query: 269 DSSKEKLSLTIRREVPRPTAYQESTTL 295
++ + +++ + + + ++ ++ +
Sbjct: 84 KNAGQTVTIIAQYKPEEYSRFEANSRV 110
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 41.1 bits (97), Expect = 3e-05
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ V+ A + GD LL++N G EA + + + + + + R
Sbjct: 36 IFISRVSE----EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 91
Query: 282 EVPRP 286
E
Sbjct: 92 ERETS 96
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 40.8 bits (96), Expect = 3e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
N V + H L GD + +IN +V++ +K++ + ++
Sbjct: 24 LNHCIVARIMH---GGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK 80
Query: 279 IRREVPRPTAYQE 291
I VP +Y+E
Sbjct: 81 I---VP---SYRE 87
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIR 280
IFV+E+ + + + +L E D +L IN ++ ++A ++ +K+ + L I
Sbjct: 51 IFVQEI---QEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIA 107
Query: 281 REVPRPTAYQ 290
R P Y+
Sbjct: 108 RG-SLPQYYK 116
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 41.7 bits (98), Expect = 4e-05
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ V V A+ + +GD ++ IN ++ EA + + + I
Sbjct: 45 VVVSAVYE---GGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDL 101
Query: 282 EVPR--PTAYQESTTL 295
V P Y + T
Sbjct: 102 VVAVCPPKEYDDELTF 117
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 41.1 bits (97), Expect = 4e-05
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 214 FGI-ILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI 268
G I+G + IF+ + L + + +L +GD +L +N S ++A +
Sbjct: 24 LGFNIVGGEXGEGIFISFI---LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80
Query: 269 DSSKEKLSLTIRREVPRPTAYQES 292
++ + +++ + + P + E+
Sbjct: 81 KNAGQTVTIIAQYK-PEEYSRFEA 103
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 43.0 bits (101), Expect = 4e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
+ G+ G +F+ + A + L GD +++IN + + +E LI
Sbjct: 100 LSVRGGLEFGCGLFISHLIK----GGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR 155
Query: 270 SSKEKLSLTIRREVPRPTAYQESTTL 295
+ K +S+ +R P L
Sbjct: 156 TEKT-VSIKVRHIGLIPVKSSPDEPL 180
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 41.2 bits (97), Expect = 4e-05
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F I G G I+V V + + A L GD +L++N+ ++ EA K +
Sbjct: 25 FSIRGGSEHGVGIYVSLV----EPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK 80
Query: 270 SSKEKLSLTIRR--EVPRPT 287
SK+ L L++ + P+
Sbjct: 81 GSKK-LVLSVYSAGRISGPS 99
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 41.6 bits (97), Expect = 4e-05
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
+++V V A L GD +L+INN D ++ + + L +
Sbjct: 43 IRRLYVNSVKE----TGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVR 98
Query: 279 IRREVPRPT 287
E+
Sbjct: 99 TYPELEEGV 107
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 40.9 bits (96), Expect = 6e-05
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + +D + + +L GD +L +N M + KLI + ++L I
Sbjct: 45 HKIGRI---IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101
Query: 282 EVPRPTAYQEST 293
+ + S+
Sbjct: 102 QEELNSPSGPSS 113
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 41.3 bits (97), Expect = 6e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTI 279
F+ +V + + L GD +L+ N G + +E +I SK ++ L +
Sbjct: 67 AFITKV---KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVV 123
Query: 280 RREVPRP 286
R P
Sbjct: 124 SRSGPSS 130
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 40.9 bits (96), Expect = 6e-05
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + +V L + G L E D ++ +N P + + A + + S + ++ ++R
Sbjct: 48 IVISDV---LPGGPADG--LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
Query: 282 EVPRPTA 288
A
Sbjct: 103 PRKVQVA 109
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 40.2 bits (94), Expect = 8e-05
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F + G + V V A +L EGD ++ IN + + I
Sbjct: 33 FNVKGGYDQKMPVIVSRVAP--GTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90
Query: 270 SSKEKLSLTIRREVPRP 286
+S E+ S + V RP
Sbjct: 91 ASCERHSGELMLLV-RP 106
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 40.4 bits (95), Expect = 8e-05
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK V + A+ +LA GD LL ++ G+S + A +L+ + ++L + +
Sbjct: 40 IYVKSV---VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
Query: 282 EVP 284
+
Sbjct: 97 QGA 99
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 40.0 bits (94), Expect = 9e-05
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+K + + ++ + +L GD +L +N + + LI + K+ L I+
Sbjct: 39 IFIKGI---VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 40.2 bits (94), Expect = 9e-05
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+++ V D A L GD L+++N + ++ +I L + +
Sbjct: 47 QYLESV----DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
Query: 282 EVPRP 286
P
Sbjct: 103 VTRHP 107
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 40.0 bits (94), Expect = 9e-05
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
I V + A+ + + GD L ++N P + +E +++ S+ ++ I
Sbjct: 30 IIVARIMR---GGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 40.4 bits (95), Expect = 9e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTI 279
I+VK + L A+ +L GD L+++N G S +E L+ S+K + +SL +
Sbjct: 41 IYVKNI---LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
Query: 280 RREVPRP 286
R+
Sbjct: 98 FRQEEAF 104
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHP-TDGMSVKEARKLIDSSKEKLSLTIR 280
IFVK+V + + +L E D +L IN+ P +S ++A L+ + L L +
Sbjct: 56 IFVKDV---QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112
Query: 281 REVPRPT 287
RE
Sbjct: 113 REPVHTK 119
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
+ IFVK+V A L GD ++K+N G + + LI +S L L+
Sbjct: 60 MDTIFVKQV----KEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
Query: 279 IRREVPRPTA 288
+ + P++
Sbjct: 116 VMPKDSGPSS 125
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 40.6 bits (95), Expect = 1e-04
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + ++ + A+ + + GD++L +N+ P +S A +++ + + +
Sbjct: 35 VIISDL---IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 91
Query: 282 EVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTR 322
P TT G ++ PPT+
Sbjct: 92 RGPEGFTTHLETTFTGDGTPKTIRVTQPLG-------PPTK 125
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 41.3 bits (96), Expect = 1e-04
Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 8/139 (5%)
Query: 71 YHTNLARQRSRVLFPVGSTFVGSVLGARGALDLANYDPSTKPHSK-STGSHLTHFNYDQP 129
Y ++R+ + L +G+ L R + Y + + + + H +
Sbjct: 15 YFPGMSREEAHKLLGEPQVSIGTFLM-RDSSRPGEYSLTVREADEGNAVCHYLIERGEPK 73
Query: 130 EKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTH------FNYDQPEKG 183
E G + + + + ++A K F + +
Sbjct: 74 EDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERET 133
Query: 184 EMSFRKGDVFHVIDTLHNG 202
++ F +G+ ++ +
Sbjct: 134 DLPFEQGERLEILSKTNQD 152
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 40.2 bits (94), Expect = 1e-04
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 214 FGIILGNK-IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
+I + + + ++ A+A L GDVL+ + + G +++E KL+ +
Sbjct: 42 LVVIQNGPYLQISHL---INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT 98
Query: 273 --EKLSLTIRR-EVPRPTAYQEST 293
L + R + P +Q+S
Sbjct: 99 IGTVLQIKAYRGFLEIPQEWQDSG 122
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 39.3 bits (92), Expect = 1e-04
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
F+K + + GD + IN G + K + K++ T++
Sbjct: 30 AFIKRIKD---GGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKL 86
Query: 282 EVPR 285
P+
Sbjct: 87 IEPK 90
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 40.7 bits (95), Expect = 2e-04
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IFVK VT + A+ ++ D+L++++ G++ A ++ ++K ++ I R
Sbjct: 113 IFVKTVT---EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Query: 282 E 282
E
Sbjct: 170 E 170
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 39.3 bits (92), Expect = 2e-04
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE 273
F I + + V+ V D+ A L + D +L++N P + E I S
Sbjct: 30 FTICCDSPVRVQAV----DSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPS 85
Query: 274 KLSLTIRREVPRPTA 288
++ L + R +
Sbjct: 86 EIILLVWRVSGPSSG 100
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 39.8 bits (93), Expect = 2e-04
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 214 FGIILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
+ GN IFV V ++ A L EGD +L++NN + +EA +
Sbjct: 43 LRLAGGNDVGIFVAGVLE----DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 98
Query: 272 KEKLSLTIRREVPRPTAYQE 291
+ +TI + + Y+
Sbjct: 99 PKGEEVTILAQ-KKKDVYRR 117
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 39.6 bits (92), Expect = 2e-04
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+++ V D A L GD L+++N + ++ +I L + +
Sbjct: 67 QYLESV----DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 122
Query: 282 EVPRP 286
P
Sbjct: 123 VTRHP 127
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 39.3 bits (92), Expect = 2e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+V V + ++ GD+LL ++ +S EA L+ + + L
Sbjct: 55 IYVISV---EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111
Query: 282 EVP 284
Sbjct: 112 VKE 114
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 214 FGIILGNK----IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
F ++ G++ + +K + + + +A ++ GDV++ +N+ G + + K+
Sbjct: 15 FTVVGGDEPDEFLQIKSL---VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
Query: 270 SSK--EKLSLTIRR 281
S + L + R
Sbjct: 72 SIPIGASVDLELCR 85
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
FRI G G I++ + + A+ +L GD L+ ++ P G S + +L+
Sbjct: 17 FRILGGNEPGEPIYIGHI---VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73
Query: 270 SSKEK--LSLTIRRE 282
+ ++ ++LT+R+
Sbjct: 74 QAAKQGHVNLTVRQT 88
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 38.9 bits (91), Expect = 2e-04
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ +V ++ A L EGD +L +N+ + +A +++ +++E +S+ +R
Sbjct: 43 IFISKV----IPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRVRF 97
Query: 282 EVPRPTA 288
P++
Sbjct: 98 -FSGPSS 103
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 39.0 bits (91), Expect = 3e-04
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 210 FRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID 269
I G G I + E+ + L GD +L +N KEA ++
Sbjct: 43 ISITGGKEHGVPILISEI---HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99
Query: 270 SSKEKLSLTIR 280
+ ++ +
Sbjct: 100 QQRGEIEFEVV 110
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+FV ++ + + +L +GD +L +N + + L+ S ++L + R
Sbjct: 31 VFVSDI---VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
Query: 282 E 282
Sbjct: 88 I 88
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 41.0 bits (95), Expect = 3e-04
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 15 RLSAIRDMMDRGRHGLLDI-TPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK 70
+ I ++ + +LD T N +L+ PIV++++ + ++ L K
Sbjct: 218 EIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK 274
Score = 36.0 bits (82), Expect = 0.013
Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 24/148 (16%)
Query: 172 RTHFNYDQPEKGE-------MSFRKGDVFHVIDTLHNGVVGSWQVFRI-----DFGIILG 219
RT+ +Y + + +SF D HV + +N W + R+ + G I
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNN----DWWIGRLVKEGCEIGFIPS 97
Query: 220 NKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNH--PTDGMSVKEARKLIDSS------ 271
H + K H P D + L+ S
Sbjct: 98 PVKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEV 157
Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKE 299
+ + + + + S T +
Sbjct: 158 TDMMQKALFDFLKHRFEGRISITRVTAD 185
Score = 31.7 bits (71), Expect = 0.32
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 122 THFNYDQPEKGE-------MSFRKGDVFHVIDTLHNGVVGSWQVFRI 161
T+ +Y + + +SF D HV + +N W + R+
Sbjct: 43 TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNN----DWWIGRL 85
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 38.9 bits (91), Expect = 3e-04
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK--LSLTI 279
I+VK + L A+ +L GD L+++N G S +E L+ S+K + +SL +
Sbjct: 60 IYVKNI---LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
Query: 280 RRE 282
R+
Sbjct: 117 FRQ 119
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 38.0 bits (89), Expect = 4e-04
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+++ V + + A L GD L+++N + + ++ I ++ + L +
Sbjct: 29 QYIRLV----EPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84
Query: 282 E 282
Sbjct: 85 P 85
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 39.1 bits (91), Expect = 4e-04
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + ++ + L GD ++ IN PT+ + +EA +L+ S +T+
Sbjct: 47 PLISYI---EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103
Query: 282 EVPRPTAYQEST 293
E + S+
Sbjct: 104 EFDVAESVIPSS 115
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 39.0 bits (91), Expect = 4e-04
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I+VK V +A+ + D ++ ++ G + + +++ ++ + + LT+ R
Sbjct: 48 IYVKSVIP---GSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
Query: 282 EVPRPTAYQESTTLP 296
+
Sbjct: 105 RKTSSSTSPLEPPSD 119
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 38.0 bits (89), Expect = 4e-04
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+++ V D + A L D L+++N +G+ E I + +++ L +
Sbjct: 30 QYIRSV----DPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85
Query: 282 EVPR 285
R
Sbjct: 86 PSTR 89
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 39.2 bits (91), Expect = 4e-04
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLID-SSKEKLSLTIR 280
I+V V A L GD ++++N ++ +ARK + S+E + L +
Sbjct: 66 IYVTRV----SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121
Query: 281 REVPRPTAYQESTT 294
R+ + Q +
Sbjct: 122 RQSLQKAVQQSMLS 135
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 38.6 bits (89), Expect = 4e-04
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
+ VKEV + + + + GD +L+IN P + V+E I + + L L
Sbjct: 43 ATTVQVKEV--NRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLL 100
Query: 279 IRREVPRPTAYQES 292
I + P P +S
Sbjct: 101 IEHD-PVPQRLDQS 113
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 38.2 bits (89), Expect = 5e-04
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
G +++ EV + +L GD L+ IN G+S +EA+ +I +K +
Sbjct: 40 GPLVYIHEV---IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 96
Query: 279 IRREVPRP 286
R
Sbjct: 97 WEIAFIRS 104
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 37.8 bits (88), Expect = 5e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
G ++ + + H A L GD++ ++N P G + ++L+ ++ + L
Sbjct: 28 GGELVIARILH---GGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILK 83
Query: 279 IRREVPRPTA 288
I + P++
Sbjct: 84 I---LSGPSS 90
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 37.3 bits (87), Expect = 5e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 108 PSTKPHSKSTGSHLTHF----NYDQPEKGEMSFRKGDVFHVIDTLHNG 151
T G+ +T F +Y+ + ++SF KG+ F ++++
Sbjct: 2 SMTGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGD 49
Score = 35.4 bits (82), Expect = 0.002
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y+ + ++SF KG+ F ++++
Sbjct: 22 YDYEAITEDDLSFHKGEKFQILNSSEGD 49
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 37.8 bits (88), Expect = 7e-04
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-----KEKLS 276
+ + ++ QL G V+L++N G +EA ++I + ++ +
Sbjct: 34 PRIVTI---QRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYID 90
Query: 277 LTIRREVPRPTA 288
+ P++
Sbjct: 91 FLVTEFNSGPSS 102
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 37.8 bits (88), Expect = 7e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 214 FGIIL-GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK 272
+G L K + ++ + A L +GD +L+IN D + +L+ S
Sbjct: 15 YGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74
Query: 273 EKLSLTIRRE 282
++L +
Sbjct: 75 NSVTLLVLDG 84
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 37.9 bits (88), Expect = 7e-04
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI--DSS 271
FG + + ++V LD+ G L +GD++ +I + ++ + +++
Sbjct: 25 FGFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV 81
Query: 272 KEKLSLTIRREVPRPTAYQESTTLPGKEN 300
+ L I R P P+ + + G
Sbjct: 82 GADVPLLILRGGP-PSPTKTAKMGSGSGQ 109
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 37.4 bits (87), Expect = 8e-04
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
L GD++ IN G+ + +L+ S K+SL
Sbjct: 52 LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTAL 92
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 37.8 bits (88), Expect = 8e-04
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 213 DFGIIL-GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
++G L K + ++ + A L +GD +L+IN D + +L+ S
Sbjct: 26 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 85
Query: 272 KEKLSLTIRRE 282
++L +
Sbjct: 86 GNSVTLLVLDG 96
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 36.6 bits (85), Expect = 8e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F Y E+SFR+GDV + + HNG+ G
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRG 55
Score = 36.6 bits (85), Expect = 8e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F Y E+SFR+GDV + + HNG+ G
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRG 55
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
F+KEV A L + DV++++N ++ I SS + ++L +
Sbjct: 29 SFIKEV----QKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLS 276
G VK++ +D+ S G L EGD+++++N ++ + ++ S +++
Sbjct: 26 GGGQRVKQI---VDSPRSRG---LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79
Query: 277 LTIRRE 282
L ++R+
Sbjct: 80 LLVQRQ 85
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 37.9 bits (88), Expect = 0.001
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMS-------VKEARKLIDSSKEK 274
IF+K + H A+ +L D L+ +N G S ++ + + + +
Sbjct: 57 IFIKSIIH---GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGM 113
Query: 275 LSLTIRRE 282
+ L I R
Sbjct: 114 IQLVILRR 121
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK 274
+K++ + + A L D+++ +N + + ++I ++
Sbjct: 24 AGPEQKGQIIKDI----EPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ 79
Query: 275 LSLT-IRREVPRP 286
+L + +E+ RP
Sbjct: 80 TTLLVLDKELERP 92
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ + ++ + A+ + + GD++L +N+ P +S A +++ + + +
Sbjct: 28 VIISDL---IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 84
Query: 282 EVPRPTAYQESTTLPG 297
P TT G
Sbjct: 85 RGPEGFTTHLETTFTG 100
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 213 DFGIIL--GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLI-D 269
D G L + V + D SA EGD ++ I +++ E KL+
Sbjct: 35 DLGFTLRGNAPVQVHFL----DPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKS 90
Query: 270 SSKEKLSLTIRREVPRPT 287
++++ + + + T
Sbjct: 91 FGEDEIEMKVVSLLDEVT 108
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 39.2 bits (92), Expect = 0.001
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 245 GDVLLKINNHPTDGMSVKEARKLIDSSK-EKLSLTIRRE 282
GDV++ ++ GMS+ + L+ ++ + +
Sbjct: 120 GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 36.5 bits (84), Expect = 0.001
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 219 GNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLT 278
+++V V A L GD +L+INN D ++ + + S+ L L
Sbjct: 34 IRRLYVNSVKE----TGLASKKGLKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLL 87
Query: 279 IRR 281
+R
Sbjct: 88 VRT 90
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 36.6 bits (85), Expect = 0.001
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
F++ V D ++ A L D ++++N +G + I + ++ L +
Sbjct: 35 QFIRSV----DPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVD 90
Query: 282 E 282
Sbjct: 91 R 91
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
V V +A + +GD +L++N +G + K+ LI + +++L LT+
Sbjct: 45 QHVSAV----LPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
Query: 282 EVPRP 286
Sbjct: 101 VESES 105
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 154
++Y E++ +GD+ V ++ G G
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEG 52
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 205
++Y E++ +GD+ V ++ G G
Sbjct: 13 YDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEG 52
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 37.2 bits (86), Expect = 0.002
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
F++ V D ++ A L D ++++N +G + I + ++ L +
Sbjct: 35 QFIRSV----DPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVD 90
Query: 282 EVPRPTAYQESTTLPGKEN 300
+++ +P +E+
Sbjct: 91 R-ETDEFFKKCRVIPSQEH 108
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 36.6 bits (85), Expect = 0.002
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEAR---KLIDSSKEKLSLT 278
I++ + A A ++ GD+LL++N+ + MS +A + I + LT
Sbjct: 35 IYIGSIMK---GGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLT 91
Query: 279 IRREVPRP 286
+ +
Sbjct: 92 VAKSGGGS 99
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 35.8 bits (83), Expect = 0.002
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ +P+ GE++FRKGDV +++
Sbjct: 24 CEHTRPKPGELAFRKGDVVTILE 46
Score = 35.8 bits (83), Expect = 0.002
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ +P+ GE++FRKGDV +++
Sbjct: 24 CEHTRPKPGELAFRKGDVVTILE 46
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 116 STGSHLTH----FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
S+GS + ++ E+ F +GD+ ++ D G G
Sbjct: 2 SSGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 52
Score = 34.9 bits (81), Expect = 0.003
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
+ ++ E+ F +GD+ ++ D G G
Sbjct: 14 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 52
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+Y E+SF+KG + HNG+ G
Sbjct: 16 FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDG 54
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+Y E+SF+KG + HNG+ G
Sbjct: 16 FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDG 54
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 35.4 bits (82), Expect = 0.002
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y + E++ +KGD+ ++++ N G
Sbjct: 9 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 47
Score = 35.4 bits (82), Expect = 0.002
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y + E++ +KGD+ ++++ N G
Sbjct: 9 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 47
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 35.5 bits (82), Expect = 0.002
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
T Y + + E+SF G V++ +G
Sbjct: 12 MTCSAYQKVQDSEISFPAGVEVQVLEKQESG 42
Score = 34.4 bits (79), Expect = 0.005
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
Y + + E+SF G V++ +G
Sbjct: 15 SAYQKVQDSEISFPAGVEVQVLEKQESG 42
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+Y E+SF+KG + HNG+ G
Sbjct: 13 FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDG 51
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+Y E+SF+KG + HNG+ G
Sbjct: 13 FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDG 51
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F++D E GE+ FR+GD HV+D +G G
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTG 47
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F++D E GE+ FR+GD HV+D +G G
Sbjct: 9 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTG 47
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKE-KLSLTIR 280
I ++ + + + + + L GD L+ +N + D S+ EA +++ + + L I
Sbjct: 46 IVIRSL---VADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGIC 102
Query: 281 R 281
Sbjct: 103 S 103
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 35.3 bits (82), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 175 FNYD-QPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID----FGIILGNKIFVKEVT 228
Y P+ E+SF KGD+F V + L +G W G+I+ + V+EV+
Sbjct: 14 LPYTKVPDTDEISFLKGDMFIVHNELEDG----WMWVTNLRTDEQGLIVED--LVEEVS 66
Score = 32.3 bits (74), Expect = 0.028
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 124 FNYD-QPEKGEMSFRKGDVFHVIDTLHNG 151
Y P+ E+SF KGD+F V + L +G
Sbjct: 14 LPYTKVPDTDEISFLKGDMFIVHNELEDG 42
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 35.5 bits (82), Expect = 0.002
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 108 PSTKPHSKSTGSHLTHF----NYDQPEKGEMSFRKGDVFHVID 146
S P + GS +Y+ ++SF+KGD V++
Sbjct: 12 NSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLE 54
Score = 35.5 bits (82), Expect = 0.003
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y+ ++SF+KGD V++
Sbjct: 32 YDYEAIHHEDLSFQKGDQMVVLE 54
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
FN++ + EMSFRKG+ ++
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLR 35
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
FN++ + EMSFRKG+ ++
Sbjct: 13 FNFNGDTQVEMSFRKGERITLLR 35
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 34.9 bits (81), Expect = 0.002
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ YD ++SF+KG+ V++
Sbjct: 14 YPYDGIHPDDLSFKKGEKMKVLE 36
Score = 34.9 bits (81), Expect = 0.002
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ YD ++SF+KG+ V++
Sbjct: 14 YPYDGIHPDDLSFKKGEKMKVLE 36
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F++ K E++F+ GDV ++ + G G
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 49
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F++ K E++F+ GDV ++ + G G
Sbjct: 11 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 49
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 35.3 bits (82), Expect = 0.003
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 214 FGI-ILGNK-IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS 271
+G + G + V + A L GD +L +N S ++ KLI
Sbjct: 15 YGFTLSGQAPCVLSCV----MRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC 70
Query: 272 KEKLSLTIRREV 283
L + I V
Sbjct: 71 SGVLHMVIAEGV 82
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
FV V ++ A L GD + +N +G+ +E +I +S L L
Sbjct: 39 TFVARV----HESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 35.1 bits (81), Expect = 0.003
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F+Y ++SFR GD V+DT H G
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEG 41
Score = 35.1 bits (81), Expect = 0.003
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
F+Y ++SFR GD V+DT H G
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEG 41
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
F+ EV D A + GD L+ + +G+ +E I +SLT+
Sbjct: 32 QFLWEV----DPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVD 87
Query: 282 E 282
Sbjct: 88 P 88
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F++ E+ +KGD+ ++ + H+G VG
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVG 52
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F++ E+ +KGD+ ++ + H+G VG
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVG 52
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 34.9 bits (81), Expect = 0.003
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 10/41 (24%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT----------LHNGVVG 154
+N+ + ++ F KGDV ++ G G
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREG 58
Score = 34.9 bits (81), Expect = 0.003
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 10/41 (24%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT----------LHNGVVG 205
+N+ + ++ F KGDV ++ G G
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREG 58
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 35.9 bits (83), Expect = 0.003
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
IF+ V + + L GD ++++N + KEA ++ SS+ L+++I
Sbjct: 43 IFISHVKP----GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVA 97
Query: 282 EVPRPTAYQESTT 294
R + +
Sbjct: 98 AAGRELFMTDRSG 110
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 0.003
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+++ E+SFR GDVFHV
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEEQW 44
Score = 34.7 bits (80), Expect = 0.003
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+++ E+SFR GDVFHV
Sbjct: 17 WDFKSRTDEELSFRAGDVFHVARKEEQW 44
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ YD + E+SF D+ +I +G
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKEDPSG 39
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ YD + E+SF D+ +I +G
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKEDPSG 39
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 34.9 bits (81), Expect = 0.004
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ +GE+ F++GD+ + + + +G G
Sbjct: 14 YDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSG 52
Score = 34.9 bits (81), Expect = 0.004
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ +GE+ F++GD+ + + + +G G
Sbjct: 14 YDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSG 52
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 35.5 bits (82), Expect = 0.004
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
+ ++ ++ A L GDVL IN T+G + K+ LI SS L++
Sbjct: 50 TLICKI----QEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 36.7 bits (86), Expect = 0.004
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL-------RAETKSNVKELRA 66
L IR + ++G +LD+ P A+ L A+F P V+F+ +++ L+
Sbjct: 86 LETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQK 143
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 35.1 bits (81), Expect = 0.004
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++Y+ ++SF KG+ F +++
Sbjct: 13 YDYNATRWTDLSFHKGEKFQILEFGPGD 40
Score = 35.1 bits (81), Expect = 0.004
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y+ ++SF KG+ F +++
Sbjct: 13 YDYNATRWTDLSFHKGEKFQILEFGPGD 40
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 34.6 bits (80), Expect = 0.004
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y + E++ +KGD+ ++++ N G
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 50
Score = 34.6 bits (80), Expect = 0.004
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y + E++ +KGD+ ++++ N G
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 50
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 34.5 bits (80), Expect = 0.004
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
+Y ++ ++SF +G+ ++ G G
Sbjct: 14 ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCG 52
Score = 34.5 bits (80), Expect = 0.004
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
+Y ++ ++SF +G+ ++ G G
Sbjct: 14 ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCG 52
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
NY + E E+S + G+V VI+ +G
Sbjct: 15 SNYKKQENSELSLQAGEVVDVIEKNESG 42
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
NY + E E+S + G+V VI+ +G
Sbjct: 15 SNYKKQENSELSLQAGEVVDVIEKNESG 42
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 34.2 bits (79), Expect = 0.004
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+Y+ G++ F KG+ +++
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILE 35
Score = 34.2 bits (79), Expect = 0.004
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+Y+ G++ F KG+ +++
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILE 35
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 34.1 bits (79), Expect = 0.004
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
FN+ Q + E+SF KGDV HV HNG G
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 49
Score = 34.1 bits (79), Expect = 0.004
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
FN+ Q + E+SF KGDV HV HNG G
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 49
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+++ E GE++F++GDV +I+ N G
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRG 47
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+++ E GE++F++GDV +I+ N G
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRG 47
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 34.6 bits (80), Expect = 0.004
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVGSW 156
F+Y + E++F K + ++ + G W
Sbjct: 13 FDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLW 53
Score = 34.6 bits (80), Expect = 0.004
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVGSW 207
F+Y + E++F K + ++ + G W
Sbjct: 13 FDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLW 53
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 116 STGSHLTH----FNYDQPEKGEMSFRKGDVFHVID 146
S+GS FN++ + EMSFRKG+ ++
Sbjct: 2 SSGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLR 36
Score = 34.5 bits (80), Expect = 0.005
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
FN++ + EMSFRKG+ ++
Sbjct: 14 FNFNGDTQVEMSFRKGERITLLR 36
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 35.1 bits (81), Expect = 0.005
Identities = 5/50 (10%), Positives = 18/50 (36%)
Query: 230 RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
L A + G +++IN ++ ++ ++ ++ +
Sbjct: 37 SLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 36.8 bits (86), Expect = 0.005
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 16 LSAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFL 53
+ + + + +LDI P + + A+ P ++F+
Sbjct: 100 FETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFI 137
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 35.1 bits (81), Expect = 0.005
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y ++SF+KGD V++
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE 32
Score = 35.1 bits (81), Expect = 0.005
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y ++SF+KGD V++
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLE 32
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+Y+ + ++ F++GD+ V+ + G VG
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVG 50
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+Y+ + ++ F++GD+ V+ + G VG
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVG 50
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 33.9 bits (78), Expect = 0.005
Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 101 LDLANYDPSTKPHSKSTGSHLTH----FNYDQPEKGEMSFRKGDVFHVID 146
+D + P+ +G+ ++Y + E++ +KGD+ +++
Sbjct: 1 MDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLN 50
Score = 33.9 bits (78), Expect = 0.005
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E++ +KGD+ +++
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLN 50
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 34.1 bits (79), Expect = 0.005
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ +GE+ F++GD+ + + + +G G
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESG 48
Score = 34.1 bits (79), Expect = 0.005
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ +GE+ F++GD+ + + + +G G
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESG 48
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 37.0 bits (85), Expect = 0.005
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I + ++ A+ T L GD +L +N + EA + + + +++ L ++
Sbjct: 105 ILISKI---FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 161
Query: 282 EVPRPTAYQESTTLP 296
++ S
Sbjct: 162 MKEVSPYFKNSAGGT 176
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 34.2 bits (79), Expect = 0.005
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 154
++Y E++F +G + H + +
Sbjct: 14 YDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQ 53
Score = 34.2 bits (79), Expect = 0.005
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 205
++Y E++F +G + H + +
Sbjct: 14 YDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQ 53
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 34.4 bits (79), Expect = 0.006
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ +Y + ++ F++G V++ NG
Sbjct: 14 VSIADY-EGDEETAGFQEGVSMEVLERNPNG 43
Score = 34.4 bits (79), Expect = 0.006
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 126 YD-QPEKGEMSFRKGDVFHVIDTLHNG 151
D + ++ F++G V++ NG
Sbjct: 17 ADYEGDEETAGFQEGVSMEVLERNPNG 43
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 34.2 bits (79), Expect = 0.006
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID--------TLHNGVVG 154
++ D + E+SF + ++ V D NG G
Sbjct: 14 YDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETG 52
Score = 34.2 bits (79), Expect = 0.006
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID--------TLHNGVVG 205
++ D + E+SF + ++ V D NG G
Sbjct: 14 YDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETG 52
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 34.1 bits (79), Expect = 0.006
Identities = 2/23 (8%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E ++ +G + +++
Sbjct: 9 YDFQATEAHDLRLERGQEYIILE 31
Score = 34.1 bits (79), Expect = 0.006
Identities = 2/23 (8%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E ++ +G + +++
Sbjct: 9 YDFQATEAHDLRLERGQEYIILE 31
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 33.7 bits (78), Expect = 0.006
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
+ ++ E+ F +GD+ ++ D G G
Sbjct: 10 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 48
Score = 33.7 bits (78), Expect = 0.006
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
+ ++ E+ F +GD+ ++ D G G
Sbjct: 10 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 48
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 34.6 bits (80), Expect = 0.006
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTA 288
+ EGD ++K+N S E KLI S ++LT+ P++
Sbjct: 47 VKEGDRIIKVNGTMVTNSSHLEVVKLIKSG-AYVALTLLGSSSGPSS 92
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 33.8 bits (78), Expect = 0.006
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 154
++Y ++ RKGD + +++ NG G
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEG 54
Score = 33.8 bits (78), Expect = 0.006
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID---------TLHNGVVG 205
++Y ++ RKGD + +++ NG G
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEG 54
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 34.2 bits (79), Expect = 0.006
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ GE+ FR+GD+ + + + +G G
Sbjct: 20 YDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSG 58
Score = 34.2 bits (79), Expect = 0.006
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ GE+ FR+GD+ + + + +G G
Sbjct: 20 YDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSG 58
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 33.7 bits (78), Expect = 0.006
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
FN+ Q + E+SF KGDV HV HNG G
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
Score = 33.7 bits (78), Expect = 0.006
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
FN+ Q + E+SF KGDV HV HNG G
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTG 51
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 33.7 bits (78), Expect = 0.007
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+++ +S KG+ V+ HNG
Sbjct: 12 YDFVASGDNTLSITKGEKLRVLGYNHNG 39
Score = 33.7 bits (78), Expect = 0.007
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+++ +S KG+ V+ HNG
Sbjct: 12 YDFVASGDNTLSITKGEKLRVLGYNHNG 39
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 33.8 bits (78), Expect = 0.007
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 157
++ E+SFRKGD+ V++ G+ G W
Sbjct: 10 YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWL 43
Score = 33.8 bits (78), Expect = 0.007
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 208
++ E+SFRKGD+ V++ G+ G W
Sbjct: 10 YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWL 43
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 33.7 bits (78), Expect = 0.008
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ E E++F+ G++ V+D ++ G
Sbjct: 12 YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTG 50
Score = 33.7 bits (78), Expect = 0.008
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ E E++F+ G++ V+D ++ G
Sbjct: 12 YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTG 50
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.9 bits (86), Expect = 0.008
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 230 RLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ A L +GDV++ N ++ E RK++DS L+L I+R
Sbjct: 389 NVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR 438
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 33.8 bits (78), Expect = 0.008
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
Y K E+ F KG VI G
Sbjct: 15 QPYTSQSKDEIGFEKGVTVEVIRKNLEG 42
Score = 33.8 bits (78), Expect = 0.008
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
Y K E+ F KG VI G
Sbjct: 15 QPYTSQSKDEIGFEKGVTVEVIRKNLEG 42
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 33.8 bits (78), Expect = 0.008
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 157
++ E++F +GD+ +++ G W+
Sbjct: 14 YDNCPDCSDELAFSRGDILTILEQHVPESEGWWK 47
Score = 33.8 bits (78), Expect = 0.008
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 208
++ E++F +GD+ +++ G W+
Sbjct: 14 YDNCPDCSDELAFSRGDILTILEQHVPESEGWWK 47
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 33.7 bits (78), Expect = 0.008
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
NY G++ F KGDV + L NGV G
Sbjct: 14 CNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSG 52
Score = 33.7 bits (78), Expect = 0.008
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
NY G++ F KGDV + L NGV G
Sbjct: 14 CNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSG 52
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 33.8 bits (78), Expect = 0.008
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F++ K E++F+ GDV ++ + G G
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 63
Score = 33.8 bits (78), Expect = 0.008
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F++ K E++F+ GDV ++ + G G
Sbjct: 25 FDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATG 63
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 34.8 bits (80), Expect = 0.008
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 214 FGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSS-K 272
F + + V + D + SA EGD ++ I ++V E KL+ S
Sbjct: 30 FTLRGNTPVQVHFL----DPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85
Query: 273 EKLSLTIRREVPR-PTAYQESTTLPG 297
E++ + + + + + +S G
Sbjct: 86 EEVEMKVVSLLDSTSSMHNKSGPSSG 111
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 154
F+++ ++ ++ F+KGD+ + D G G
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 47
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 205
F+++ ++ ++ F+KGD+ + D G G
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 47
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 33.9 bits (78), Expect = 0.009
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y+ + ++SF KG+ F +++
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILN 34
Score = 33.9 bits (78), Expect = 0.009
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y+ + ++SF KG+ F +++
Sbjct: 12 YDYEARTEDDLSFHKGEKFQILN 34
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 126 YD---QPEKGEMSFRKGDVFHVIDTLHNG 151
YD E+ +KGDV ++ +G
Sbjct: 7 YDFPGSGSPSELPLKKGDVIYITREEPSG 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 177 YD---QPEKGEMSFRKGDVFHVIDTLHNG 202
YD E+ +KGDV ++ +G
Sbjct: 7 YDFPGSGSPSELPLKKGDVIYITREEPSG 35
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 36.5 bits (85), Expect = 0.009
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 232 DNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
+ A L + DV++ +N + S+ E RK++ + ++L I R
Sbjct: 371 VKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVR 418
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 33.4 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y + E++FR+G++ H+I
Sbjct: 13 FPYTGTNEDELTFREGEIIHLIS 35
Score = 33.4 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y + E++FR+G++ H+I
Sbjct: 13 FPYTGTNEDELTFREGEIIHLIS 35
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++YD E++F++GD V G
Sbjct: 10 YDYDAQTGDELTFKEGDTIIVHQKDPAG 37
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++YD E++F++GD V G
Sbjct: 10 YDYDAQTGDELTFKEGDTIIVHQKDPAG 37
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 34.4 bits (79), Expect = 0.009
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 108 PSTKPHSKSTGSHLTHF----NYDQPEKGEMSFRKGDVFHVID 146
+ + +T F +Y+ ++SF+KG+ F +I+
Sbjct: 14 VVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIIN 56
Score = 34.4 bits (79), Expect = 0.010
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y+ ++SF+KG+ F +I+
Sbjct: 34 YDYEARTTEDLSFKKGERFQIIN 56
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F++ E++ +KGD+ ++ + H+G +G
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLG 46
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F++ E++ +KGD+ ++ + H+G +G
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLG 46
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 33.4 bits (77), Expect = 0.010
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
+ Y E G+++F +G+ V
Sbjct: 15 YPYSSVEPGDLTFTEGEEILVTQK 38
Score = 33.4 bits (77), Expect = 0.010
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT 198
+ Y E G+++F +G+ V
Sbjct: 15 YPYSSVEPGDLTFTEGEEILVTQK 38
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 35.9 bits (82), Expect = 0.010
Identities = 12/105 (11%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
F++ V D ++ A L D ++++N +G + I + ++ L +
Sbjct: 35 QFIRSV----DPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVD 90
Query: 282 EVPRPTAYQESTTLPGKENNYMDPLSTNYSSQNLYVQPPTRGGPS 326
+ + + + + PL +++ + +
Sbjct: 91 --RETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAE 133
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 33.4 bits (77), Expect = 0.010
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 157
++Y+ E+SF +G + +++ + G W+
Sbjct: 15 YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWE 48
Score = 33.4 bits (77), Expect = 0.010
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQ 208
++Y+ E+SF +G + +++ + G W+
Sbjct: 15 YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWE 48
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 34.3 bits (79), Expect = 0.011
Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 215 GIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEK 274
+K++ + + A L D+++ +N + + ++I ++
Sbjct: 25 AGPEQKGQIIKDI----EPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ 80
Query: 275 LSLTI 279
+L +
Sbjct: 81 TTLLV 85
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 33.3 bits (77), Expect = 0.011
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 116 STGSHLTH----FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
S+GS Y E+ +KG+ V+ +G
Sbjct: 2 SSGSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDG 41
Score = 33.0 bits (76), Expect = 0.016
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
Y E+ +KG+ V+ +G
Sbjct: 14 HTYSAHRPEELDLQKGEGIRVLGKYQDG 41
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 33.9 bits (78), Expect = 0.011
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E++ R+ + + ++D
Sbjct: 26 YDYQTNDPQELALRRNEEYCLLD 48
Score = 33.9 bits (78), Expect = 0.011
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E++ R+ + + ++D
Sbjct: 26 YDYQTNDPQELALRRNEEYCLLD 48
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 33.6 bits (77), Expect = 0.012
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ E E++F+ G++ V+D ++ +G
Sbjct: 24 YDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIG 62
Score = 33.6 bits (77), Expect = 0.012
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ E E++F+ G++ V+D ++ +G
Sbjct: 24 YDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIG 62
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 36.1 bits (84), Expect = 0.012
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 232 DNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
N++ + GD+++ N P VK + + K++L + + R
Sbjct: 394 SENSAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLR 441
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 33.0 bits (76), Expect = 0.012
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVGSW 156
F+Y + E++F K + ++ + G W
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLW 50
Score = 33.0 bits (76), Expect = 0.012
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVGSW 207
F+Y + E++F K + ++ + G W
Sbjct: 10 FDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLW 50
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 33.0 bits (76), Expect = 0.012
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++Y E+ GD+ VI +G
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDG 42
Score = 33.0 bits (76), Expect = 0.012
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y E+ GD+ VI +G
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDG 42
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 33.4 bits (77), Expect = 0.013
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ + E+ FRK D+ +I NG+ G
Sbjct: 14 LDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRG 52
Score = 33.4 bits (77), Expect = 0.013
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ + E+ FRK D+ +I NG+ G
Sbjct: 14 LDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRG 52
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 33.5 bits (77), Expect = 0.013
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 156
+ + E+S +++ W
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGNTEW 52
Score = 33.5 bits (77), Expect = 0.013
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 207
+ + E+S +++ W
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGNTEW 52
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 33.0 bits (76), Expect = 0.013
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++ + G+++F+KG++ VI+ +G
Sbjct: 17 GDFTAQQVGDLTFKKGEILLVIEKKPDG 44
Score = 33.0 bits (76), Expect = 0.013
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++ + G+++F+KG++ VI+ +G
Sbjct: 17 GDFTAQQVGDLTFKKGEILLVIEKKPDG 44
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 33.6 bits (77), Expect = 0.013
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+K ++ GD+ V NG
Sbjct: 25 RVPCAYDKTALALEVGDIVKVTRMNING 52
Score = 33.6 bits (77), Expect = 0.013
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+K ++ GD+ V NG
Sbjct: 25 RVPCAYDKTALALEVGDIVKVTRMNING 52
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 34.4 bits (79), Expect = 0.013
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
I++ E+ N+ +A ++ EGD +++IN A + +K L R
Sbjct: 50 IYISEI---DPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARP 106
Query: 282 EVPRPTAYQESTTLPG 297
E+ + + + P
Sbjct: 107 ELQLDEGWMDDDSGPS 122
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 33.0 bits (76), Expect = 0.013
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ + E ++ R GD+ +++
Sbjct: 14 YKFVPQENEDLEMRPGDIITLLE 36
Score = 33.0 bits (76), Expect = 0.013
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ + E ++ R GD+ +++
Sbjct: 14 YKFVPQENEDLEMRPGDIITLLE 36
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 33.0 bits (76), Expect = 0.013
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y + E++ +KGD+ ++++ NG G
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQG 51
Score = 33.0 bits (76), Expect = 0.013
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y + E++ +KGD+ ++++ NG G
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQG 51
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 32.9 bits (76), Expect = 0.013
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
+ +D + G++ + GD +++ L NG G
Sbjct: 9 YQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTG 47
Score = 32.9 bits (76), Expect = 0.013
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
+ +D + G++ + GD +++ L NG G
Sbjct: 9 YQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTG 47
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++++ E+ E+ FR G+V V+D
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLD 30
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++++ E+ E+ FR G+V V+D
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLD 30
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 32.6 bits (75), Expect = 0.014
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID----------TLHNGVVG 154
++YD E+ E+SF+ GD + L +G +G
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLG 50
Score = 32.6 bits (75), Expect = 0.014
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID----------TLHNGVVG 205
++YD E+ E+SF+ GD + L +G +G
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLG 50
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 32.5 bits (75), Expect = 0.015
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E G++ FRKGDV ++
Sbjct: 10 YSFAGEESGDLPFRKGDVITILK 32
Score = 32.5 bits (75), Expect = 0.015
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E G++ FRKGDV ++
Sbjct: 10 YSFAGEESGDLPFRKGDVITILK 32
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (76), Expect = 0.015
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL----------HNGVVG 154
+N+ + E+S R+GDV + + NG +G
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIG 54
Score = 33.1 bits (76), Expect = 0.015
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL----------HNGVVG 205
+N+ + E+S R+GDV + + NG +G
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIG 54
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 33.1 bits (76), Expect = 0.015
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 124 FNYD-QPEKGEMSFRKGDVFHVIDTLHNG 151
+++ E+ +KGD+ + +G
Sbjct: 9 YDFPGSGSSSELPLKKGDIVFISRDEPSG 37
Score = 33.1 bits (76), Expect = 0.015
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 175 FNYD-QPEKGEMSFRKGDVFHVIDTLHNG 202
+++ E+ +KGD+ + +G
Sbjct: 9 YDFPGSGSSSELPLKKGDIVFISRDEPSG 37
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 32.5 bits (74), Expect = 0.017
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRID--FGIILGNKIFVKEVT 228
F Y + E+S G V++ +G W + G N +V E
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDG----WWRGSYNGQIGWFPSN--YVLEEV 57
Score = 28.3 bits (63), Expect = 0.49
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F Y + E+S G V++ +G
Sbjct: 8 FAYVAEREDELSLVXGSRVTVMEXCSDG 35
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 33.1 bits (76), Expect = 0.017
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y + E++ +KGD+ ++++ N G
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 62
Score = 33.1 bits (76), Expect = 0.017
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y + E++ +KGD+ ++++ N G
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 62
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 33.5 bits (77), Expect = 0.017
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTTLP 296
+ D L+++N + S +E + + S ++ + + + E + P
Sbjct: 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK-ETDKRHVEQKSGP 103
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 33.1 bits (76), Expect = 0.018
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+++ E++F+ GDV V+D +
Sbjct: 17 WDHVTMANRELAFKAGDVIKVLDASNKD 44
Score = 33.1 bits (76), Expect = 0.018
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+++ E++F+ GDV V+D +
Sbjct: 17 WDHVTMANRELAFKAGDVIKVLDASNKD 44
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 32.1 bits (74), Expect = 0.019
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F+Y E++ G++ I G
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGG 35
Score = 32.1 bits (74), Expect = 0.019
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
F+Y E++ G++ I G
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGG 35
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 32.7 bits (75), Expect = 0.019
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E+SF++GD+ V++
Sbjct: 16 YDFKATADDELSFKRGDILKVLN 38
Score = 32.7 bits (75), Expect = 0.019
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E+SF++GD+ V++
Sbjct: 16 YDFKATADDELSFKRGDILKVLN 38
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 33.1 bits (76), Expect = 0.019
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 214 FGI-ILGNK--IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDS 270
FG I + VK++ G L EGD++++IN +S E ++
Sbjct: 23 FGFTIADSPTGQRVKQIL------DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKD 76
Query: 271 SK--EKLSLTIRREVPRPTA 288
+ SL I R +
Sbjct: 77 CPIGSETSLIIHRGSGPSSG 96
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 32.7 bits (75), Expect = 0.019
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
FN+ Q + E+S KGD+ +V NG G
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTG 55
Score = 32.7 bits (75), Expect = 0.019
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
FN+ Q + E+S KGD+ +V NG G
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTG 55
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 32.3 bits (74), Expect = 0.020
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E++ +KGD+ +++
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLN 30
Score = 32.3 bits (74), Expect = 0.020
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E++ +KGD+ +++
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLN 30
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.7 bits (75), Expect = 0.021
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++++ + G+++F+ GD VI
Sbjct: 24 YSFEGQQPGDLNFQAGDRITVIS 46
Score = 32.7 bits (75), Expect = 0.021
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++++ + G+++F+ GD VI
Sbjct: 24 YSFEGQQPGDLNFQAGDRITVIS 46
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 32.2 bits (74), Expect = 0.021
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 154
F+++ ++ ++ F+KGD+ + D G G
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 49
Score = 32.2 bits (74), Expect = 0.021
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 205
F+++ ++ ++ F+KGD+ + D G G
Sbjct: 10 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 49
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 33.2 bits (76), Expect = 0.022
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ + + E+SFRKG+ +I
Sbjct: 24 YTFKGDLEVELSFRKGEHICLIR 46
Score = 33.2 bits (76), Expect = 0.022
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ + + E+SFRKG+ +I
Sbjct: 24 YTFKGDLEVELSFRKGEHICLIR 46
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 32.1 bits (74), Expect = 0.022
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ + E++ + GD +++D
Sbjct: 9 YDFMAESQDELTIKSGDKVYILD 31
Score = 32.1 bits (74), Expect = 0.022
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ + E++ + GD +++D
Sbjct: 9 YDFMAESQDELTIKSGDKVYILD 31
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 32.6 bits (75), Expect = 0.022
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ Y + E+ R+GD V+ +G
Sbjct: 14 YQYRPQNEDELELREGDRVDVMQQCDDG 41
Score = 32.6 bits (75), Expect = 0.022
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ Y + E+ R+GD V+ +G
Sbjct: 14 YQYRPQNEDELELREGDRVDVMQQCDDG 41
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 33.4 bits (76), Expect = 0.023
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQV-----FRIDFGIILG--NKIFV 224
+Y P+ ++ +G V +V L W + D LG V
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85
Query: 225 KEVT 228
+E
Sbjct: 86 REDQ 89
Score = 31.5 bits (71), Expect = 0.11
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQV 158
+Y P+ ++ +G V +V L W
Sbjct: 29 QDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGG 63
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 32.2 bits (74), Expect = 0.023
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y + E+ + GD+ + +
Sbjct: 14 FEYIPQNEDELELKVGDIIDINE 36
Score = 32.2 bits (74), Expect = 0.023
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y + E+ + GD+ + +
Sbjct: 14 FEYIPQNEDELELKVGDIIDINE 36
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 32.2 bits (74), Expect = 0.024
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y + E+ + GD+ + +
Sbjct: 8 FEYIPQNEDELELKVGDIIDINE 30
Score = 32.2 bits (74), Expect = 0.024
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y + E+ + GD+ + +
Sbjct: 8 FEYIPQNEDELELKVGDIIDINE 30
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 32.3 bits (74), Expect = 0.025
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++++ E E++F+ G++ V+D + +G
Sbjct: 24 YDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIG 62
Score = 32.3 bits (74), Expect = 0.025
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++++ E E++F+ G++ V+D + +G
Sbjct: 24 YDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIG 62
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 33.9 bits (77), Expect = 0.026
Identities = 4/23 (17%), Positives = 16/23 (69%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ ++ E+S ++GD+ +++
Sbjct: 12 YDFCARDRSELSLKEGDIIKILN 34
Score = 33.9 bits (77), Expect = 0.026
Identities = 4/23 (17%), Positives = 16/23 (69%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ ++ E+S ++GD+ +++
Sbjct: 12 YDFCARDRSELSLKEGDIIKILN 34
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 33.2 bits (76), Expect = 0.026
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y + E+SF KG + +V++ NGV G
Sbjct: 41 YDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTG 79
Score = 33.2 bits (76), Expect = 0.026
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y + E+SF KG + +V++ NGV G
Sbjct: 41 YDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTG 79
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 32.2 bits (74), Expect = 0.026
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+Y E+ + GD+ V+ + NG G
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTG 52
Score = 32.2 bits (74), Expect = 0.026
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+Y E+ + GD+ V+ + NG G
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTG 52
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 32.3 bits (74), Expect = 0.026
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E++ R + ++++D
Sbjct: 27 YDYQTNDPQELALRCDEEYYLLD 49
Score = 32.3 bits (74), Expect = 0.026
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E++ R + ++++D
Sbjct: 27 YDYQTNDPQELALRCDEEYYLLD 49
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 32.3 bits (74), Expect = 0.028
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL-------HNGVVG 154
++ + ++F K D+ V++ +G G
Sbjct: 17 CSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRG 54
Score = 32.3 bits (74), Expect = 0.028
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL-------HNGVVG 205
++ + ++F K D+ V++ +G G
Sbjct: 17 CSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRG 54
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 31.8 bits (73), Expect = 0.030
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLH---------NGVVG 154
++YD E++ R G++ + L NG G
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRG 47
Score = 31.8 bits (73), Expect = 0.030
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLH---------NGVVG 205
++YD E++ R G++ + L NG G
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRG 47
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 33.1 bits (75), Expect = 0.030
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVT 228
+N+ ++S + GDV + +T + G ++ GI + I +KEVT
Sbjct: 66 YNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVT 119
Score = 31.2 bits (70), Expect = 0.16
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 108 PSTKPHSKSTGSHLTH----FNYDQPEKGEMSFRKGDVFHVIDT 147
+ S S+G H +N+ ++S + GDV + +T
Sbjct: 46 SGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET 89
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 32.4 bits (74), Expect = 0.030
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+Y P+ FR+G+ VI
Sbjct: 24 SDYPSPDISPPIFRRGEKLRVIS 46
Score = 32.4 bits (74), Expect = 0.030
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+Y P+ FR+G+ VI
Sbjct: 24 SDYPSPDISPPIFRRGEKLRVIS 46
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 32.3 bits (74), Expect = 0.031
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+Y+ + + F++ D+ +
Sbjct: 17 KDYNVSDTSLLPFKRNDIITITF 39
Score = 32.3 bits (74), Expect = 0.031
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+Y+ + + F++ D+ +
Sbjct: 17 KDYNVSDTSLLPFKRNDIITITF 39
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 32.3 bits (74), Expect = 0.031
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTI 279
L + +IN G+ + ++ +S +++TI
Sbjct: 41 LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 31.9 bits (73), Expect = 0.031
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y + +++F K V
Sbjct: 14 FPYKSDYEDDLNFEKDQEIIVTS 36
Score = 31.9 bits (73), Expect = 0.031
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y + +++F K V
Sbjct: 14 FPYKSDYEDDLNFEKDQEIIVTS 36
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 34.6 bits (78), Expect = 0.031
Identities = 16/94 (17%), Positives = 34/94 (36%)
Query: 109 STKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISA 168
+P + S L + + + + TL V S Q + A
Sbjct: 75 PAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEA 134
Query: 169 QIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ R F+++ ++ ++ F+KGD+ + D
Sbjct: 135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 168
Score = 34.2 bits (77), Expect = 0.054
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ F+++ ++ ++ F+KGD+ + D
Sbjct: 122 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 168
Score = 29.9 bits (66), Expect = 1.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 123 HFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ +K ++ G++ V +G
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINVSG 273
Score = 29.9 bits (66), Expect = 1.1
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 174 HFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ +K ++ G++ V +G
Sbjct: 245 KRVPNAYDKTALALEVGELVKVTKINVSG 273
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 31.9 bits (73), Expect = 0.032
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ + + E++F KG+ VI+
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIE 35
Score = 31.9 bits (73), Expect = 0.032
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ + + E++F KG+ VI+
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIE 35
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 32.5 bits (74), Expect = 0.034
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 156
+++ E+SFR GD+ ++ V W
Sbjct: 24 YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGW 56
Score = 32.5 bits (74), Expect = 0.034
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 207
+++ E+SFR GD+ ++ V W
Sbjct: 24 YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGW 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 31.9 bits (73), Expect = 0.034
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 121 LTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ +K ++ GD+ V NG
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNING 37
Score = 31.9 bits (73), Expect = 0.036
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+K ++ GD+ V NG
Sbjct: 10 RVPCAYDKTALALEVGDIVKVTRMNING 37
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 31.9 bits (73), Expect = 0.035
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ +K ++ G++ V +G
Sbjct: 15 RVPNAYDKTALALEVGELVKVTKINVSG 42
Score = 31.9 bits (73), Expect = 0.035
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ +K ++ G++ V +G
Sbjct: 15 RVPNAYDKTALALEVGELVKVTKINVSG 42
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 32.4 bits (74), Expect = 0.035
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ + + E++F KG+ VI+
Sbjct: 24 YPFSSVTEEELNFEKGETMEVIE 46
Score = 32.4 bits (74), Expect = 0.035
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ + + E++F KG+ VI+
Sbjct: 24 YPFSSVTEEELNFEKGETMEVIE 46
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 34.1 bits (77), Expect = 0.036
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 148 LHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
L V S Q + A+ R F+++ ++ ++ F+KGD+ + D
Sbjct: 116 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 170
Score = 32.6 bits (73), Expect = 0.12
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ F+++ ++ ++ F+KGD+ + D
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 170
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 32.4 bits (74), Expect = 0.038
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
FNY + E+S KG V++ +G
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDG 51
Score = 32.4 bits (74), Expect = 0.038
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
FNY + E+S KG V++ +G
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDG 51
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 31.9 bits (73), Expect = 0.039
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y+ E++ ++GD+ +I+
Sbjct: 14 FPYEAQNDDELTIKEGDIVTLIN 36
Score = 31.9 bits (73), Expect = 0.039
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y+ E++ ++GD+ +I+
Sbjct: 14 FPYEAQNDDELTIKEGDIVTLIN 36
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 33.9 bits (77), Expect = 0.040
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E+SF++GD+ V++
Sbjct: 7 YDFKATADDELSFKRGDILKVLN 29
Score = 33.9 bits (77), Expect = 0.040
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E+SF++GD+ V++
Sbjct: 7 YDFKATADDELSFKRGDILKVLN 29
Score = 29.7 bits (66), Expect = 0.99
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ + F++D E GE+ FR+GD HV+D
Sbjct: 148 LRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN 192
Score = 29.3 bits (65), Expect = 1.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ F++D E GE+ FR+GD HV+D
Sbjct: 153 QVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN 192
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 31.9 bits (73), Expect = 0.040
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + ++ E+SF++G + +VI
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIK 46
Score = 31.9 bits (73), Expect = 0.040
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + ++ E+SF++G + +VI
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIK 46
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 32.3 bits (74), Expect = 0.041
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTI 279
++V V + A+ L GD + I+ P + + ++ + + +++ +T
Sbjct: 7 VYVMSVLP--NMPAAGR---LEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTF 59
Query: 280 RRE 282
R+
Sbjct: 60 IRD 62
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 32.1 bits (73), Expect = 0.043
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ ++ EMSF GD+ V +
Sbjct: 12 YPFEARNHDEMSFNSGDIIQVDE 34
Score = 32.1 bits (73), Expect = 0.043
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ ++ EMSF GD+ V +
Sbjct: 12 YPFEARNHDEMSFNSGDIIQVDE 34
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (73), Expect = 0.043
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y+ E++ ++GD+ +I+
Sbjct: 16 FPYEAQNDDELTIKEGDIVTLIN 38
Score = 31.9 bits (73), Expect = 0.043
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y+ E++ ++GD+ +I+
Sbjct: 16 FPYEAQNDDELTIKEGDIVTLIN 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.044
Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 71/202 (35%)
Query: 1 MMEESDSKKCSGIIRL-----SAIRDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRA 55
M+ E+ ++ R GLL T + Q P + L
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-------QFTQ--P-ALTL-M 1739
Query: 56 ETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVG-SVLG--------ARGALDLAN- 105
E K+ ++L +S+ L P +TF G S LG A + + +
Sbjct: 1740 E-KAAFEDL--------------KSKGLIPADATFAGHS-LGEYAALASLA-DVMSIESL 1782
Query: 106 ---------YDPSTKPHSKSTGSHLTHFNYD----QPEKGEMSFRKGDVFHVIDTL---H 149
P + S NY P + SF + + +V++ +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRS-----NYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 150 NGVVGSWQVFRIA-HNCISAQI 170
+V I +N + Q
Sbjct: 1838 GWLV------EIVNYNVENQQY 1853
Score = 30.0 bits (67), Expect = 1.5
Identities = 74/429 (17%), Positives = 117/429 (27%), Gaps = 167/429 (38%)
Query: 3 EESDSKKCSGIIR------LSAIRDMMDRGRHGLLDITPNAVD----RLNYAQF------ 46
++ K +I+ + A R + L AV +L A F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----RAVGEGNAQL-VAIFGGQGNT 166
Query: 47 --YPIVIF--LRA--ET-KSNVKELRAGIPKYHTNLARQRSRV--LFPVG---------- 87
Y F LR +T V +L + + L R +F G
Sbjct: 167 DDY----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 88 -----STFVGSV---LGARGALDLANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKG 139
++ S+ G + LA+Y + K + G ++ KG
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL-------------KG 269
Query: 140 DVFHVIDTLHNGVV--------GSWQVF-RIAHNCISA--QI-KRTHFNY---------- 177
H G+V SW+ F I+ I R + Y
Sbjct: 270 ATGHS-----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 178 -DQPEKGE-----M----SFRKGDVFHVID--------------TLHNG----VV----- 204
D E E M + + V ++ +L NG VV
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 205 ----------------GSWQVFRIDFG---IILGNK---IFV-------KEVTHRLDNNA 235
G Q RI F + N+ + + ++ +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 236 SAGTHQLAEGDVLLKINNHPT-DGMSVKEARKLIDSSKEKLSLTIRRE-VPRPTAYQEST 293
D ++I + T DG + R L S E++ I R V T Q
Sbjct: 444 VKNNVSFNAKD--IQIPVYDTFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 294 T--L---PG 297
T L PG
Sbjct: 499 THILDFGPG 507
Score = 28.1 bits (62), Expect = 4.8
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 29/99 (29%)
Query: 12 GIIRLSAI-RDMMDRGRHGLLDITPNAVDRLNYAQFYPIVIFLRAETKSNVKELRAGIPK 70
G+ A+ RD + R +G++ I P V E V E
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRV-----------AASFSQEALQYVVE------- 1831
Query: 71 YHTNLARQRSRVLFPV-----GSTFVGSVLGARGALDLA 104
+ ++ ++ V +V + G ALD
Sbjct: 1832 ---RVGKRTGWLVEIVNYNVENQQYVAA--GDLRALDTV 1865
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 31.2 bits (71), Expect = 0.048
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 RTHFNYD-QPEKGEMSFRKGDVFHVIDTLHNG 202
R Y P+ E+SF KGD+F V + L +G
Sbjct: 9 RAILPYTKVPDTDEISFLKGDMFIVHNELEDG 40
Score = 30.9 bits (70), Expect = 0.074
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 124 FNYD-QPEKGEMSFRKGDVFHVIDTLHNG 151
Y P+ E+SF KGD+F V + L +G
Sbjct: 12 LPYTKVPDTDEISFLKGDMFIVHNELEDG 40
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 31.0 bits (71), Expect = 0.050
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++YD E E++F + D I+
Sbjct: 7 YDYDAAEDNELTFVENDKIINIE 29
Score = 31.0 bits (71), Expect = 0.050
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++YD E E++F + D I+
Sbjct: 7 YDYDAAEDNELTFVENDKIINIE 29
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 31.5 bits (72), Expect = 0.050
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ + E++ + GD +++D
Sbjct: 13 YDFMAESQDELTIKSGDKVYILD 35
Score = 31.5 bits (72), Expect = 0.050
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ + E++ + GD +++D
Sbjct: 13 YDFMAESQDELTIKSGDKVYILD 35
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 31.5 bits (72), Expect = 0.051
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++ E++F +G+V V
Sbjct: 17 YDCQADNDDELTFIEGEVIIVTG 39
Score = 31.5 bits (72), Expect = 0.051
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++ E++F +G+V V
Sbjct: 17 YDCQADNDDELTFIEGEVIIVTG 39
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 32.1 bits (73), Expect = 0.052
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 14/45 (31%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID--------------TLHNGVVG 154
F+Y+ E++ R+GD V+ L +G VG
Sbjct: 36 FDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVG 80
Score = 32.1 bits (73), Expect = 0.052
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 14/45 (31%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID--------------TLHNGVVG 205
F+Y+ E++ R+GD V+ L +G VG
Sbjct: 36 FDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVG 80
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 31.6 bits (72), Expect = 0.057
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
+++ + E++ KGD+ + + NG G
Sbjct: 14 YSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKG 52
Score = 31.6 bits (72), Expect = 0.057
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
+++ + E++ KGD+ + + NG G
Sbjct: 14 YSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKG 52
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 31.7 bits (72), Expect = 0.061
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
F+Y E+ + GD+ V+ + NG G
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTG 63
Score = 31.7 bits (72), Expect = 0.061
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
F+Y E+ + GD+ V+ + NG G
Sbjct: 25 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTG 63
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 31.0 bits (71), Expect = 0.064
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++Y E+SF D+ I+ + +G
Sbjct: 16 YDYQAAGDDEISFDPDDIITNIEMIDDG 43
Score = 31.0 bits (71), Expect = 0.064
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y E+SF D+ I+ + +G
Sbjct: 16 YDYQAAGDDEISFDPDDIITNIEMIDDG 43
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 31.2 bits (71), Expect = 0.069
Identities = 4/22 (18%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 126 YD-QPEKGEMSFRKGDVFHVID 146
E++ +KGD+ +++
Sbjct: 7 PPYSAGGREVTMKKGDILTLLN 28
Score = 31.2 bits (71), Expect = 0.069
Identities = 4/22 (18%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 177 YD-QPEKGEMSFRKGDVFHVID 197
E++ +KGD+ +++
Sbjct: 7 PPYSAGGREVTMKKGDILTLLN 28
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 31.1 bits (71), Expect = 0.071
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F Y+ E++ ++GD+ +I+
Sbjct: 9 FPYEAQNDDELTIKEGDIVTLIN 31
Score = 31.1 bits (71), Expect = 0.071
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F Y+ E++ ++GD+ +I+
Sbjct: 9 FPYEAQNDDELTIKEGDIVTLIN 31
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 31.2 bits (71), Expect = 0.072
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F + + +KGD+ +I G
Sbjct: 18 FTPSPYDTDSLKLKKGDIIDIISKPPMG 45
Score = 31.2 bits (71), Expect = 0.072
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
F + + +KGD+ +I G
Sbjct: 18 FTPSPYDTDSLKLKKGDIIDIISKPPMG 45
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 31.5 bits (72), Expect = 0.072
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTI 279
I+ V + A + GD ++ + S ++ I S K +K++L I
Sbjct: 3 IYASSVVE--NMPAKGK---IEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKI 55
Query: 280 RRE 282
RE
Sbjct: 56 ERE 58
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 32.1 bits (73), Expect = 0.074
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
L G V+ IN PT ++ + + E +++T +
Sbjct: 42 LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQG 82
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 31.1 bits (71), Expect = 0.076
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++++ +G +S +G+ +++
Sbjct: 14 YHFEGSSEGTISMAEGEDLSLME 36
Score = 31.1 bits (71), Expect = 0.076
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++++ +G +S +G+ +++
Sbjct: 14 YHFEGSSEGTISMAEGEDLSLME 36
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 33.5 bits (77), Expect = 0.081
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+N+ + ++ F KGDV ++ +
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTKDP 45
Score = 33.5 bits (77), Expect = 0.081
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+N+ + ++ F KGDV ++ +
Sbjct: 18 YNFHGTAEQDLPFCKGDVLTIVAVTKDP 45
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 33.4 bits (75), Expect = 0.081
Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 43 YAQFYPIVIFLRAETKSNVKELRAGIPKYHTNLARQRSRVLFPVGSTFVGSVLGARGALD 102
Y QF+ + L + L ++V V + A A
Sbjct: 61 YRQFHALQSKLEERF-----GPDSKSSALAXTLPTLPAKVYVGVKQEIAEMRIPALNAY- 114
Query: 103 LANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIA 162
+ P + F Y P E + V S +
Sbjct: 115 --MKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQ----ALRRLRPRTRKVKSVSPQGNS 168
Query: 163 HNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ ++A F++ K E++F+ GDV ++ ++
Sbjct: 169 VDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD 208
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 30.7 bits (70), Expect = 0.090
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F+Y ++ E+ +K + ++D
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLD 36
Score = 30.7 bits (70), Expect = 0.090
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F+Y ++ E+ +K + ++D
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLD 36
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 33.6 bits (77), Expect = 0.090
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+++ +S KG+ V+ HNG
Sbjct: 50 YDFVASGDNTLSITKGEKLRVLGYNHNG 77
Score = 33.6 bits (77), Expect = 0.090
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+++ +S KG+ V+ HNG
Sbjct: 50 YDFVASGDNTLSITKGEKLRVLGYNHNG 77
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 30.7 bits (70), Expect = 0.090
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 116 STGSHLTH----FNYDQPEKGEMSFRKGDVFHVID 146
S+GS + ++ E++ +G+ V+D
Sbjct: 2 SSGSSGLKMQVLYEFEARNPRELTVVQGEKLEVLD 36
Score = 30.7 bits (70), Expect = 0.095
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ ++ E++ +G+ V+D
Sbjct: 14 YEFEARNPRELTVVQGEKLEVLD 36
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 33.3 bits (75), Expect = 0.092
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F + + ++ F +G+ ++ +
Sbjct: 154 FKFTGERETDLPFEQGERLEILSKTNQD 181
Score = 33.3 bits (75), Expect = 0.092
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
F + + ++ F +G+ ++ +
Sbjct: 154 FKFTGERETDLPFEQGERLEILSKTNQD 181
Score = 28.6 bits (63), Expect = 2.8
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 107 DPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ +P + + + ++ +KG V + NG
Sbjct: 239 NIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNG 283
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 31.3 bits (71), Expect = 0.093
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+Y +SF +GD+ ++
Sbjct: 15 RSYITDNCSLLSFHRGDLIKLLP 37
Score = 31.3 bits (71), Expect = 0.093
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+Y +SF +GD+ ++
Sbjct: 15 RSYITDNCSLLSFHRGDLIKLLP 37
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 31.0 bits (70), Expect = 0.095
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 126 YD---QPEKGEMSFRKGDVFHVIDTLHNG 151
D + ++ R GDV V++ +G
Sbjct: 25 KDFWNLHDPTALNVRAGDVITVLEQHPDG 53
Score = 31.0 bits (70), Expect = 0.095
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 177 YD---QPEKGEMSFRKGDVFHVIDTLHNG 202
D + ++ R GDV V++ +G
Sbjct: 25 KDFWNLHDPTALNVRAGDVITVLEQHPDG 53
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 30.7 bits (70), Expect = 0.10
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E+S K +V V++
Sbjct: 14 YDFTARNANELSVLKDEVLEVLE 36
Score = 30.7 bits (70), Expect = 0.10
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E+S K +V V++
Sbjct: 14 YDFTARNANELSVLKDEVLEVLE 36
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 30.3 bits (69), Expect = 0.10
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E+S K DV ++D
Sbjct: 8 YDFVARNSSELSVMKDDVLEILD 30
Score = 30.3 bits (69), Expect = 0.10
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E+S K DV ++D
Sbjct: 8 YDFVARNSSELSVMKDDVLEILD 30
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 30.8 bits (70), Expect = 0.11
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 154
++Y E+SF D+ I+ + G G
Sbjct: 24 YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG 62
Score = 30.8 bits (70), Expect = 0.11
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTL--------HNGVVG 205
++Y E+SF D+ I+ + G G
Sbjct: 24 YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG 62
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ Y+ E+S GD+ VI
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIR 29
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ Y+ E+S GD+ VI
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIR 29
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 30.3 bits (69), Expect = 0.12
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ E+SF G VF +
Sbjct: 17 YACKAEHDSELSFTAGTVFDNVH 39
Score = 30.3 bits (69), Expect = 0.12
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ E+SF G VF +
Sbjct: 17 YACKAEHDSELSFTAGTVFDNVH 39
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 30.5 bits (69), Expect = 0.12
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
Y ++S G + ++ +G
Sbjct: 14 SAYVASGSEQLSLAPGQLILILKKNTSG 41
Score = 30.5 bits (69), Expect = 0.12
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
Y ++S G + ++ +G
Sbjct: 14 SAYVASGSEQLSLAPGQLILILKKNTSG 41
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 30.9 bits (70), Expect = 0.12
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E+ +K + ++D
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLD 60
Score = 30.9 bits (70), Expect = 0.12
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E+ +K + ++D
Sbjct: 38 WDYTAQQDQELDIKKNERLWLLD 60
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 30.9 bits (70), Expect = 0.12
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSKE--KLSLTIRRE 282
L +GD+ + +N L S E ++SLT+ R+
Sbjct: 37 LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERD 77
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 30.3 bits (69), Expect = 0.12
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E+ +K + ++D
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLD 33
Score = 30.3 bits (69), Expect = 0.12
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E+ +K + ++D
Sbjct: 11 WDYTAQQDQELDIKKNERLWLLD 33
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 31.0 bits (70), Expect = 0.13
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 242 LAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
L +GD+ + +N L S ++SLT+ R+
Sbjct: 55 LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERD 95
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 32.8 bits (75), Expect = 0.13
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKG 183
++Y+ + ++SF+KG+ +++ G W +AH+ + Q NY P
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTE----GDW---WLAHSLSTGQTGYIPSNYVAPSDS 61
Query: 184 EMSF 187
+
Sbjct: 62 IQAE 65
Score = 32.8 bits (75), Expect = 0.16
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 207
++Y+ + ++SF+KG+ +++ G W
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTE----GDW 37
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 30.4 bits (69), Expect = 0.13
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ E+S ++ DV V+D
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLD 37
Score = 30.4 bits (69), Expect = 0.13
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ E+S ++ DV V+D
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLD 37
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 30.2 bits (68), Expect = 0.15
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 130 EKGEMSFRKGDVFHVIDTLHNG 151
E++ +KGD+ ++++ +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKD 25
Score = 30.2 bits (68), Expect = 0.15
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 181 EKGEMSFRKGDVFHVIDTLHNG 202
E++ +KGD+ ++++ +
Sbjct: 4 GPREVTMKKGDILTLLNSTNKD 25
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 30.7 bits (70), Expect = 0.16
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 222 IFVKEVTHRLDNNASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTI 279
++V V D+ +A L GD++ +I+ + S +E I S K + + +
Sbjct: 9 VYVMSVK---DDVPAAD--VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINY 61
Query: 280 RR 281
+
Sbjct: 62 KH 63
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 29.8 bits (68), Expect = 0.17
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
F + K E+ G++ V+
Sbjct: 14 FGFVPETKEELQVMPGNIVFVLK 36
Score = 29.8 bits (68), Expect = 0.17
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
F + K E+ G++ V+
Sbjct: 14 FGFVPETKEELQVMPGNIVFVLK 36
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 32.0 bits (72), Expect = 0.17
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHN 150
+Y+ G++ F KG+ +++
Sbjct: 19 HSYEPSHDGDLGFEKGEQLRILEQSGE 45
Score = 32.0 bits (72), Expect = 0.17
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHN 201
+Y+ G++ F KG+ +++
Sbjct: 19 HSYEPSHDGDLGFEKGEQLRILEQSGE 45
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y ++ E+SFR GD +
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQ 35
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y ++ E+SFR GD +
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQ 35
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 30.1 bits (68), Expect = 0.19
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++YD E+S +V V
Sbjct: 24 YDYDAANSTELSLLADEVITVFS 46
Score = 30.1 bits (68), Expect = 0.19
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++YD E+S +V V
Sbjct: 24 YDYDAANSTELSLLADEVITVFS 46
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 30.7 bits (70), Expect = 0.22
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRR 281
G + +GD+++K+N P S E ++ + + L L +RR
Sbjct: 49 QRGG---IQDGDIIVKVNGRPLVDSS--ELQEAVLTES-PLLLEVRR 89
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 30.6 bits (70), Expect = 0.26
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
A+ L + DV+ K+++ + + + + + + + +T R
Sbjct: 70 ANGH---LEKYDVITKVDDKEIASST--DLQSALYNHSIGDTIKITYYRN 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.29
Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 45/178 (25%)
Query: 120 HLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQ 179
H H + D E GE ++ D+ V + F +C D
Sbjct: 1 HHHHHHMDF-ETGEHQYQYKDILSVFE----------DAFVDNFDC-----------KDV 38
Query: 180 PEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL--GNKI---FVKEVTHRLDNN 234
+ + K ++ H+I + R+ F +L ++ FV+EV L N
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS----GTLRL-FWTLLSKQEEMVQKFVEEV---LRIN 90
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSV-KEARKLIDSSKEKLSLTIRREVPRPTAYQE 291
+ P+ + E R + + + + + V R Y +
Sbjct: 91 YKFLMSPIKT------EQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLK 139
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 31.7 bits (70), Expect = 0.32
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT----------LHNGVVG 154
++Y+ E E+SF+ GD ++ L NG VG
Sbjct: 435 YDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVG 475
Score = 31.7 bits (70), Expect = 0.32
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT----------LHNGVVG 205
++Y+ E E+SF+ GD ++ L NG VG
Sbjct: 435 YDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVG 475
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 29.2 bits (66), Expect = 0.32
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 126 YD---QPEKGEMSFRKGDVFHVID 146
YD +P E++ +G++ V +
Sbjct: 16 YDFAAEPGNNELTVTEGEIITVTN 39
Score = 29.2 bits (66), Expect = 0.32
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 177 YD---QPEKGEMSFRKGDVFHVID 197
YD +P E++ +G++ V +
Sbjct: 16 YDFAAEPGNNELTVTEGEIITVTN 39
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 31.5 bits (70), Expect = 0.34
Identities = 10/99 (10%), Positives = 22/99 (22%)
Query: 104 ANYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAH 163
Y S + N + ++ + + + +
Sbjct: 175 VPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQ 234
Query: 164 NCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
N +K ++ GD+ V NG
Sbjct: 235 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNING 273
Score = 29.2 bits (64), Expect = 1.7
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 105 NYDPSTKPHSKSTGSHLTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
P+ + T +++ + ++ F+KG++ +I+
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ 159
Score = 28.8 bits (63), Expect = 2.2
Identities = 6/47 (12%), Positives = 20/47 (42%)
Query: 156 WQVFRIAHNCISAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ + + RT +++ + ++ F+KG++ +I+
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ 159
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 30.0 bits (68), Expect = 0.37
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
AG L GDV+L I V+ A + ++ + +L++ IRR
Sbjct: 49 HRAG---LRPGDVILAIGEQM-----VQNAEDVYEAVRTQSQLAVQIRRG 90
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 29.2 bits (66), Expect = 0.40
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
++Y + E++ + +V VI+
Sbjct: 20 YSYKASQPDELTIEEHEVLEVIE 42
Score = 29.2 bits (66), Expect = 0.40
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
++Y + E++ + +V VI+
Sbjct: 20 YSYKASQPDELTIEEHEVLEVIE 42
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 28.8 bits (65), Expect = 0.41
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 132 GEMSFRKGDVFHVIDTL--------HNGVVG 154
E++ +KGD+ ++++ N G
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQG 34
Score = 28.8 bits (65), Expect = 0.41
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 183 GEMSFRKGDVFHVIDTL--------HNGVVG 205
E++ +KGD+ ++++ N G
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQG 34
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 29.4 bits (66), Expect = 0.46
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 3/53 (5%)
Query: 107 DPSTKPHSKSTGSHLTH---FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 156
S+ +H T + Y E+ GD + W
Sbjct: 3 SGSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGW 55
Score = 26.7 bits (59), Expect = 4.0
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSW 207
+ Y E+ GD + W
Sbjct: 23 YPYTPQNDDELELVPGDFIFMSPMEQTSTSEGW 55
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 28.9 bits (65), Expect = 0.49
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 154
+ + E++ ++ DV V+ L +G G
Sbjct: 24 KAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETG 63
Score = 28.9 bits (65), Expect = 0.49
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 205
+ + E++ ++ DV V+ L +G G
Sbjct: 24 KAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETG 63
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 31.1 bits (70), Expect = 0.55
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+++ + E+ F+ GDV V+D +
Sbjct: 37 WDHVTMDDQELGFKAGDVIEVMDATNRE 64
Score = 31.1 bits (70), Expect = 0.55
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+++ + E+ F+ GDV V+D +
Sbjct: 37 WDHVTMDDQELGFKAGDVIEVMDATNRE 64
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 29.3 bits (65), Expect = 0.69
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
+Y + E+ + GDV VI
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPF 74
Score = 29.3 bits (65), Expect = 0.69
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT 198
+Y + E+ + GDV VI
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPF 74
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 30.8 bits (70), Expect = 0.71
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
++Y+ ++SF+KGD V++
Sbjct: 15 YDYEAIHHEDLSFQKGDQMVVLEE 38
Score = 30.8 bits (70), Expect = 0.71
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT 198
++Y+ ++SF+KGD V++
Sbjct: 15 YDYEAIHHEDLSFQKGDQMVVLEE 38
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 27.5 bits (62), Expect = 0.87
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++++ E+ +GD+ + G
Sbjct: 8 YDFEPENDNELRLAEGDIVFISYKHGQG 35
Score = 27.5 bits (62), Expect = 0.87
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++++ E+ +GD+ + G
Sbjct: 8 YDFEPENDNELRLAEGDIVFISYKHGQG 35
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 29.9 bits (68), Expect = 0.94
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVPRPTAYQESTT 294
+ G L E DV++ IN + + +I L++ +RR
Sbjct: 268 EAGG---LKENDVIISINGQSVVSAN--DVSDVIKRES-TLNMVVRRGNEDIMITVIPEE 321
Query: 295 LPGKENNYM 303
+ E+++
Sbjct: 322 IDPLEHHHH 330
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 28.7 bits (64), Expect = 0.95
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 9/43 (20%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDT---------LHNGVVG 205
T + E+ F++G + V +G
Sbjct: 29 LTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLG 71
Score = 28.3 bits (63), Expect = 1.3
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 17/48 (35%)
Query: 124 FNYD--------QPEKGEMSFRKGDVFHVIDT---------LHNGVVG 154
F+YD + E+ F++G + V +G
Sbjct: 24 FDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLG 71
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 27.7 bits (62), Expect = 1.1
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++++ E+ +GD+ + G
Sbjct: 12 YDFEPENDNELRLAEGDIVFISYKHGQG 39
Score = 27.7 bits (62), Expect = 1.1
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++++ E+ +GD+ + G
Sbjct: 12 YDFEPENDNELRLAEGDIVFISYKHGQG 39
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+ Y Q + E++ GD ++
Sbjct: 8 YAYVQKDDDEITITPGDKISLVA 30
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+ Y Q + E++ GD ++
Sbjct: 8 YAYVQKDDDEITITPGDKISLVA 30
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 27.2 bits (61), Expect = 1.2
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 118 GSHLTH---FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
GS TH F + + E+ D V +
Sbjct: 1 GSEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDY 37
Score = 27.2 bits (61), Expect = 1.5
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 167 SAQIKRTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
S Q R F + + E+ D V +
Sbjct: 2 SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDY 37
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 29.8 bits (67), Expect = 1.2
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 23/138 (16%)
Query: 176 NYDQPEKG---EMSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIIL------GNKIFVKE 226
+Y Q + + + F ID+L + + S + D+ + +
Sbjct: 40 DYFQKPEAFLKKAVASMDNGFSKIDSLLDEPIPS---YGFDYTLYKVLDNDTAYNALISY 96
Query: 227 VTHRLDNN--ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRREVP 284
V + + AG L G ++ +N E L+ S +L + + +EV
Sbjct: 97 V---VPGSPAEEAG---LQRGHWIMMMNGDYITKKVESE---LLQGSTRQLQIGVYKEVV 147
Query: 285 RPTAYQESTTLPGKENNY 302
+P E
Sbjct: 148 GEDGEVTGGVVPIGETTM 165
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
A+AG + +G V+ K+++ P + + S ++LT +
Sbjct: 256 ANAG---VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDP 300
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 126 YD---QPEKGEMSFRKGDVFHVID 146
YD + + E++ +KGD+ ++
Sbjct: 14 YDFVPENPEMEVALKKGDLMAILS 37
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 177 YD---QPEKGEMSFRKGDVFHVID 197
YD + + E++ +KGD+ ++
Sbjct: 14 YDFVPENPEMEVALKKGDLMAILS 37
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 127 DQPEKGEMSFRKGDVFHVIDTLH---------NGVVG 154
+ + E++F GD+ V + NG G
Sbjct: 24 NVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKG 60
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 178 DQPEKGEMSFRKGDVFHVIDTLH---------NGVVG 205
+ + E++F GD+ V + NG G
Sbjct: 24 NVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKG 60
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 28.5 bits (63), Expect = 2.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
+N+ ++S + GDV + +T
Sbjct: 24 YNFQGSGAPQLSLQIGDVVRIQET 47
Score = 28.5 bits (63), Expect = 2.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDT 198
+N+ ++S + GDV + +T
Sbjct: 24 YNFQGSGAPQLSLQIGDVVRIQET 47
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 28.9 bits (63), Expect = 2.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDT 198
+ +Y + E+ + GDV VI
Sbjct: 146 QAQHDYTATDTDELQLKAGDVVLVIPF 172
Score = 28.1 bits (61), Expect = 3.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDT 147
+Y + E+ + GDV VI
Sbjct: 149 HDYTATDTDELQLKAGDVVLVIPF 172
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 26.9 bits (60), Expect = 2.3
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
R F + + E+ D V +
Sbjct: 10 RAIFRFVPRHEDELELEVDDPLLVELQAEDY 40
Score = 26.5 bits (59), Expect = 3.5
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
F + + E+ D V +
Sbjct: 13 FRFVPRHEDELELEVDDPLLVELQAEDY 40
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 28.0 bits (62), Expect = 2.3
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
+ + E+ G+ +
Sbjct: 10 YEFKAERDDELDVSPGENLSICAHYDYE 37
Score = 28.0 bits (62), Expect = 2.3
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
+ + E+ G+ +
Sbjct: 10 YEFKAERDDELDVSPGENLSICAHYDYE 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.0 bits (64), Expect = 2.5
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 185 MSFRKGDVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAE 244
S+ G F D +G + F++D + K + + ++ + +
Sbjct: 720 HSYEMGGTFTDKDPFRSGRIACD--FKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT 777
Query: 245 GDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
G ++ I+ S R L + + + + +
Sbjct: 778 GYLIEDIDGETVGAGS-NIYRVLSEKAGTSARIRLSGK 814
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 26.9 bits (60), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 172 RTHFNYD-QPEKGEMSFRKGDVFHVID 197
+T F + K +SF +GDV ++
Sbjct: 11 KTIFPHTAGNNKTLLSFAQGDVLTLLI 37
Score = 26.6 bits (59), Expect = 3.3
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 124 FNYD-QPEKGEMSFRKGDVFHVID 146
F + K +SF +GDV ++
Sbjct: 14 FPHTAGNNKTLLSFAQGDVLTLLI 37
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 27.1 bits (60), Expect = 2.7
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 126 YD---QPEKGEMSFRKGDVFHVID 146
YD + + E++ +KGD+ ++
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILS 44
Score = 27.1 bits (60), Expect = 2.7
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 177 YD---QPEKGEMSFRKGDVFHVID 197
YD + + E++ +KGD+ ++
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILS 44
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 126 YD---QPEKGEMSFRKGDVFHVIDTLHNGVVGS--WQV 158
YD + + E++ +KGD+ ++ S W+V
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 177 YD---QPEKGEMSFRKGDVFHVIDTLHNGVVGS--WQV 209
YD + + E++ +KGD+ ++ S W+V
Sbjct: 21 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 27.1 bits (60), Expect = 4.1
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVID 146
+++ + E++ G+ +
Sbjct: 12 YDFKAEKADELTTYVGENLFICA 34
Score = 27.1 bits (60), Expect = 4.1
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVID 197
+++ + E++ G+ +
Sbjct: 12 YDFKAEKADELTTYVGENLFICA 34
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 28.3 bits (63), Expect = 4.2
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNGVVGSWQVFRIAHNCISAQIKRTHFNYDQPEKG 183
++Y+ + ++SF+KG+ +++ G W +AH+ + Q NY P
Sbjct: 92 YDYESRTETDLSFKKGERLQIVNNTE----GDW---WLAHSLSTGQTGYIPSNYVAPSDS 144
Query: 184 EMSF 187
+
Sbjct: 145 IQAE 148
Score = 28.3 bits (63), Expect = 4.5
Identities = 5/28 (17%), Positives = 16/28 (57%)
Query: 175 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y+ + ++SF+KG+ +++
Sbjct: 92 YDYESRTETDLSFKKGERLQIVNNTEGD 119
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 28.0 bits (63), Expect = 4.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
AG L GDV+L I V+ A + ++ + +L++ IRR
Sbjct: 270 HRAG---LRPGDVILAIGEQM-----VQNAEDVYEAVRTQSQLAVQIRRG 311
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.2 bits (58), Expect = 4.9
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 9/33 (27%)
Query: 131 KGEMSFRKGDVFHVIDTLH---------NGVVG 154
KG ++ R GDV V + G G
Sbjct: 28 KGRLALRAGDVVMVYGPMDDQGFYYGELGGHRG 60
Score = 26.2 bits (58), Expect = 4.9
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 9/33 (27%)
Query: 182 KGEMSFRKGDVFHVIDTLH---------NGVVG 205
KG ++ R GDV V + G G
Sbjct: 28 KGRLALRAGDVVMVYGPMDDQGFYYGELGGHRG 60
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 27.8 bits (62), Expect = 5.4
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 172 RTHFNYDQPEKGEMSFRKGDVFHVIDTLHNG 202
++Y E++F KG + +V++
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPD 36
Score = 27.4 bits (61), Expect = 7.2
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 124 FNYDQPEKGEMSFRKGDVFHVIDTLHNG 151
++Y E++F KG + +V++
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPD 36
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 26.1 bits (57), Expect = 6.0
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSKEKLSLTIRRE 282
A A +A G L ++ T + + E ++T+
Sbjct: 16 AEAQ---IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF 60
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
{Thalictrum flavum} PDB: 2vne_A*
Length = 201
Score = 27.3 bits (60), Expect = 6.3
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 191 DVFHVIDTLHNGVVGSWQVFRIDFGIILGNKIFVKEVTHRLDNNASAGTHQLAEGDVL 248
F ++ + +G VG+ + + F KE +DN Q+ EG L
Sbjct: 63 GAFEKLEIIGDGGVGT--ILDMTFVPGEFPH-EYKEKFILVDNEHRLKKVQMIEGGYL 117
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein,
jelly roll, viral beta barrel, viral protein; 1.65A
{Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1
PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A
1w8x_A
Length = 394
Score = 27.4 bits (60), Expect = 8.0
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 106 YDPSTKPHSKSTGSHLTHFNYDQPEKGEMS-------FRKGDVFHVID---TLHNGVVGS 155
YDP + H++++G HL N + +S + GDV +VID T+ G G
Sbjct: 101 YDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGE 160
Query: 156 WQVF 159
++
Sbjct: 161 LTMY 164
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 27.1 bits (61), Expect = 8.3
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 235 ASAGTHQLAEGDVLLKINNHPTDGMSVKEARKLIDSSK--EKLSLTIRRE 282
A+AG + D+++ ++N P E + + + + + R+
Sbjct: 258 ANAG---IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRD 302
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,151,778
Number of extensions: 313429
Number of successful extensions: 1229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 581
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)