BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9839
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDL--DMEMPLSHYFIASSHN 111
+++EP+ + +S EGF+RYL ++N E + DL DM PLS YFI SSHN
Sbjct: 276 EKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEAL---DLSTDMTQPLSAYFINSSHN 332
Query: 112 TYLTGHQLKGESSVDLYSQ 130
TYLT QL G SSV++Y Q
Sbjct: 333 TYLTAGQLAGTSSVEMYRQ 351
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 67.4 bits (163), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDL--DMEMPLSHYFIASSHN 111
+++EP+ + +S EGF+RYL ++N E + DL DM PLS YFI SSHN
Sbjct: 278 EKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEAL---DLSTDMTQPLSAYFINSSHN 334
Query: 112 TYLTGHQLKGESSVDLYSQ 130
TYLT QL G SSV++Y Q
Sbjct: 335 TYLTAGQLAGTSSVEMYRQ 353
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 55 RHEPDSGLRSQHC-LSFEGFARYLMDKDNFAFASERMCPDDLDMEMPLSHYFIASSHNTY 113
++EP SG+ +Q LS EG +L +N A +++ DM PL+HYFI SSHNTY
Sbjct: 273 KYEP-SGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHH-DMTQPLNHYFINSSHNTY 330
Query: 114 LTGHQLKGESSVDLYSQFI 132
LT Q G SS ++Y Q +
Sbjct: 331 LTAGQFSGLSSAEMYRQVL 349
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDN--FAFASERMCPDDLDMEMPLSHYFIASSHN 111
+R+EP ++Q ++ +GF YL+ D F+ A R+ D M+ PLSHY ++SSHN
Sbjct: 122 ERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQD---MDQPLSHYLVSSSHN 178
Query: 112 TYLTGHQLKGESSVDLY 128
TYL QL G SS + Y
Sbjct: 179 TYLLEDQLTGPSSTEAY 195
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDN--FAFASERMCPDDLDMEMPLSHYFIASSHN 111
+R+EP ++Q ++ +GF YL+ D F+ A R+ D M+ PLSHY ++SSHN
Sbjct: 124 ERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQD---MDQPLSHYLVSSSHN 180
Query: 112 TYLTGHQLKGESSVDLY 128
TYL QL G SS + Y
Sbjct: 181 TYLLEDQLTGPSSTEAY 197
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 58.5 bits (140), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 68 LSFEGFARYLMDKDNFAFASERMCPDDL--DMEMPLSHYFIASSHNTYLTGHQLKGESSV 125
L+ EG +LM ++N R+ DL +M++ L+ Y+I SSHNTYLTGHQL G+SSV
Sbjct: 297 LTKEGLLYFLMCEENNLTPMHRL---DLGANMKLTLAAYYINSSHNTYLTGHQLTGKSSV 353
Query: 126 DLYSQFI 132
++Y Q +
Sbjct: 354 EIYRQVL 360
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 57.8 bits (138), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 68 LSFEGFARYLMDKDNFAFASERMCPDDL--DMEMPLSHYFIASSHNTYLTGHQLKGESSV 125
L+ EG +LM ++N R+ DL +M++ L+ Y+I SSHNTYLTGHQL G+SSV
Sbjct: 297 LTKEGLLYFLMCEENNLTPMHRL---DLGANMKLSLAAYYINSSHNTYLTGHQLTGKSSV 353
Query: 126 DLYSQFI 132
++Y Q +
Sbjct: 354 EIYRQVL 360
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 80 KDNFAFASERMCP--DDLDMEMPLSHYFIASSHNTYLTGHQLKGESSVDLYSQFISDYNG 137
+D AF ++ P D L + +S + Y T QL GE+ +Y + ++
Sbjct: 343 EDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSP 402
Query: 138 EDHYFTRIGPGGLLNLDKIY 157
+ T I PG + D +Y
Sbjct: 403 AVRWGTTILPGQAITWDHLY 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,294,713
Number of Sequences: 62578
Number of extensions: 260740
Number of successful extensions: 456
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 10
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)