RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9839
(197 letters)
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 87.4 bits (215), Expect = 2e-20
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDLDMEMPLSHYFIASSHNTY 113
+++EP+ + +S EGF+RYL ++N E + DM PLS YFI SSHNTY
Sbjct: 276 EKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLST-DMTQPLSAYFINSSHNTY 334
Query: 114 LTGHQLKGESSVDLYSQ 130
LT QL G SSV++Y Q
Sbjct: 335 LTAGQLAGTSSVEMYRQ 351
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 85.0 bits (209), Expect = 1e-19
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 46 RHGNHRRTQRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDLDMEMPLSHYF 105
++EP + LS EG +L +N A +++ DM PL+HYF
Sbjct: 264 PDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKLLLHH-DMTQPLNHYF 322
Query: 106 IASSHNTYLTGHQLKGESSVDLYSQ 130
I SSHNTYLT Q G SS ++Y Q
Sbjct: 323 INSSHNTYLTAGQFSGLSSAEMYRQ 347
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 83.5 bits (205), Expect = 4e-19
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 36 ELLEYGQLQFRHGNHRRTQRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDL 95
+ L + + + + L+ EG +LM ++N R+
Sbjct: 265 KTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMCEENNLTPMHRLDLGA- 323
Query: 96 DMEMPLSHYFIASSHNTYLTGHQLKGESSVDLYSQ 130
+M++ L+ Y+I SSHNTYLTGHQL G+SSV++Y Q
Sbjct: 324 NMKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYRQ 358
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 80.0 bits (196), Expect = 6e-18
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDLDMEMPLSHYFIASSHNTY 113
+R+EP ++Q ++ +GF YL+ D AF+ DM+ PLSHY ++SSHNTY
Sbjct: 124 ERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAHRRVYQ-DMDQPLSHYLVSSSHNTY 182
Query: 114 LTGHQLKGESSVDLYSQ 130
L QL G SS + Y +
Sbjct: 183 LLEDQLTGPSSTEAYIR 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.14
Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 44/154 (28%)
Query: 45 FRH-GNH-RRTQRHEPDSGLRSQHCLSFEGFAR-YLMDKDNFAFASERMCPDDLDMEMPL 101
+ H G+H + + E F +L +F F +++ D
Sbjct: 474 YSHIGHHLKNIEHPE-----------RMTLFRMVFL----DFRFLEQKIRHDSTAWNAS- 517
Query: 102 SHYFIASSHNTYLTGHQLKGESSVDLYSQFISDYNGEDHYFTRIGPGGLLNLDKIYKTHA 161
S NT QLK Y +I D D + R+ +L+ + +
Sbjct: 518 -----GSILNTL---QQLK------FYKPYICD---NDPKYERL-VNAILDFLPKIEENL 559
Query: 162 VMDRIASFHLHYHQR--EHDTNPV-RETMRQARR 192
+ + + + + + E +Q +R
Sbjct: 560 ICSK----YTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 28.3 bits (62), Expect = 2.1
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 21/88 (23%)
Query: 26 CPILYTTGCIELLEYGQLQFRHGNHRRTQRHEPDSGLRSQHCLSFEGFARYLMDKDNFAF 85
C IL TT ++ ++ L H H L S +YL
Sbjct: 266 CKILLTTRFKQVTDF--LSAATTTHISLDHHSM--TLTPDEVKSL--LLKYL-------- 311
Query: 86 ASERMCPDDLDMEM----PLSHYFIASS 109
P DL E+ P IA S
Sbjct: 312 ---DCRPQDLPREVLTTNPRRLSIIAES 336
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics,
joint center for structura genomics, JCSG, protein
structure initiative; 2.80A {Bacteroides vulgatus}
Length = 252
Score = 30.4 bits (68), Expect = 0.32
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 106 IASSHNTYLTGHQLKGESSVDLYSQFISDYNGEDHYFTRIGPGGLLNLDKIYKTHAVMDR 165
++S H Y + + +++++L + ++ DY+G D +F LLNL ++ A+ +
Sbjct: 150 VSSCHTYYNYDNNINYQANLNLQA-YVIDYDGVDSFFYF-----LLNLGQLRNRTALPND 203
Query: 166 I--------ASFHLHYHQREHDTNPVR 184
I +++++H + R D NPVR
Sbjct: 204 IGYCMNHGLSTYNVHANYRLDDENPVR 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.4
Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 44/141 (31%)
Query: 61 GLRSQHCLSFEGFARYLMDKDNFAFASERMCP----DDLDMEMPLSHYFIASSHNTYLTG 116
G+R ++ +D+ P +L E + + + N++L
Sbjct: 307 GVRCYEAYPNTSLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDY--VNKT-NSHL-- 360
Query: 117 HQLKGESSVDLYSQFISDYNGEDHYFTRIGP----GGL-LNLDKIYKTHAVMD--RI--- 166
V IS NG + GP GL L L K K + +D RI
Sbjct: 361 ---PAGKQV-----EISLVNGAKN-LVVSGPPQSLYGLNLTLRKA-KAPSGLDQSRIPFS 410
Query: 167 --------------ASFHLHY 173
+ FH H
Sbjct: 411 ERKLKFSNRFLPVASPFHSHL 431
Score = 28.1 bits (62), Expect = 2.3
Identities = 45/251 (17%), Positives = 70/251 (27%), Gaps = 104/251 (41%)
Query: 7 ELMGDSSDNHPACVRGQ-EMCPILYTTGCIELLEYGQLQFRHGNH-RRTQRHEPDS---- 60
++ DS +N + P+L + L Q+Q ++ +T H P
Sbjct: 322 SILEDSLEN------NEGVPSPMLSISN----LTQEQVQ----DYVNKTNSHLPAGKQVE 367
Query: 61 -GL---RSQHCLSFEGFARYLMDKDNFAFASERM-CPDDLD-MEMPLS-------HYFIA 107
L +S G + L + P LD +P S + F+
Sbjct: 368 ISLVNGAKNLVVS--GPPQSLY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 108 SS---HNTYLTG------HQLKGE----SSVDL----YSQFISDYNGED----------- 139
+ H+ L L ++ D+ Y F +G D
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF----DGSDLRVLSGSISER 478
Query: 140 -----------------HYFTRI---GPGGLLNLDKIYKTHAVMD----R-IASFHLHYH 174
T I GPGG L + TH D R I + L
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL--THRNKDGTGVRVIVAGTL--- 533
Query: 175 QREHDTNPVRE 185
D NP +
Sbjct: 534 ----DINPDDD 540
Score = 26.9 bits (59), Expect = 5.1
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 23/56 (41%)
Query: 101 LSH----YFIASSHNTYLTGHQLKGE-------------------SSVDLYSQFIS 133
LSH + + ++ QL+ + + +L +F+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Score = 26.9 bits (59), Expect = 5.5
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 74 ARYLMDK-DNFAFASERMCPDDLDMEMPLSHYFIASSHNTYLTGHQLK-------GESSV 125
A+ + ++ DN + D+ + P++ H G +++ E+ V
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTI----HFGGEKGKRIRENYSAMIFETIV 1697
Query: 126 DLYSQFISDYNGEDHYFTRI---GPGGLLNL 153
D + + + + T GLL+
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage
T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Length = 290
Score = 28.4 bits (64), Expect = 1.4
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 8 LMGDSSDNHP 17
+MGD DN
Sbjct: 197 IMGDLGDNIR 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.5
Identities = 5/14 (35%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 117 HQLKG-ESSVDLYS 129
LK ++S+ LY+
Sbjct: 20 QALKKLQASLKLYA 33
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 27.8 bits (61), Expect = 2.7
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 9/72 (12%)
Query: 84 AFASERMCPDDLDMEMP-LSHYFIASSHNTYLTGHQLKGESSVDLYSQFISDYNGEDHYF 142
+ + P + Y ++ L K Y QF +YF
Sbjct: 905 VRTAPNVQPKQCIVYFWDAHQYKGWKPYDI-LLIGMPKPLHLAGGYEQF-------RYYF 956
Query: 143 TRIGPGGLLNLD 154
P + +
Sbjct: 957 MNGSPAPVTDRG 968
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 27.5 bits (62), Expect = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 LMGDSSDNHP 17
L GD SDN P
Sbjct: 185 LTGDESDNLP 194
>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response
regulator, DNA binding domain; HET: DNA BRU; 1.60A
{Staphylococcus aureus}
Length = 103
Score = 25.9 bits (57), Expect = 4.7
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 104 YFIASSHNTYLTGHQLKGESSVDLYSQFISDYNGEDHYFTRIGPGGLLNLDKIYK 158
+F +S+ + L H + + + + + D F R ++N I
Sbjct: 26 FFESSTKSHRLIAHLDNRQIE---FYGNLKELSQLDDRFFRCHNSFVVNRHNIES 77
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 26.6 bits (58), Expect = 5.2
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERMCPDDLDMEMPLSHYFIASSHNTY 113
R + + + L + FAF+ + PD + +P H +S +Y
Sbjct: 97 NRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSY 156
Query: 114 LT-GHQLKGESSVDLYS 129
Q G + D YS
Sbjct: 157 GGFELQTPGPGNGDQYS 173
>3mf6_A Endo-1,4-beta-xylanase; peptide binding, jelly-role, designed,
computational, family thumb, glycosidase, hydrolase,
xylan degradation; 1.28A {Thermopolyspora flexuosa} PDB:
3mf9_A 3mfc_A 3mfa_A 1m4w_A* 3b5l_B 3zse_A* 1hix_A
Length = 193
Score = 26.0 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 100 PLSHYFIASSHNTYLTGHQLKGESSVD 126
PL Y I S TY KG + D
Sbjct: 86 PLVSYHIVESWGTYRPTGTYKGTVTTD 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,045,772
Number of extensions: 172614
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 22
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)