RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9839
         (197 letters)



>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 349

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query: 96  DMEMPLSHYFIASSHNTYLTGHQLKGESSVDLYSQ 130
           DM  PL+HYFI SSHNTYLT  Q  G SS ++Y Q
Sbjct: 2   DMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQ 36


>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 100 PLSHYFIASSHNTYLTGHQLKGESSVDLYSQ 130
           PLSHY ++SSHNTYL   QL G SS + Y +
Sbjct: 3   PLSHYLVSSSHNTYLLEDQLTGPSSTEAYIR 33


>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific
          phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 94

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 54 QRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASER 89
          +R+EP    ++Q  ++ +GF  YL+  D  AF+   
Sbjct: 52 ERYEPSETAKAQRQMTKDGFLMYLLSADGNAFSLAH 87


>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 170

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 50  HRRTQRHEPDSGLRSQHCLSFEGFARYLMDKDNFAFASERM 90
                ++EP      +  LS EG   +L   +N   A +++
Sbjct: 127 QGLIDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKL 167


>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
           {Bacillus cereus [TaxId: 1396]}
          Length = 296

 Score = 32.9 bits (74), Expect = 0.020
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 94  DLDMEMPLSHYFIASSHNTY 113
            +   +PL+   I  +H++ 
Sbjct: 16  PIPDSIPLARISIPGTHDSG 35


>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 274

 Score = 29.4 bits (65), Expect = 0.26
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 94  DLDMEMPLSHYFIASSHNTY 113
            L     L+   I  +H+T 
Sbjct: 9   ALPDTTNLAALSIPGTHDTM 28


>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5
          [TaxId: 10726]}
          Length = 105

 Score = 26.5 bits (58), Expect = 1.1
 Identities = 5/18 (27%), Positives = 6/18 (33%)

Query: 8  LMGDSSDNHPACVRGQEM 25
          +MGD  DN          
Sbjct: 13 IMGDLGDNIRGVEGIGAK 30


>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA
          polymerase Taq {Thermus aquaticus [TaxId: 271]}
          Length = 116

 Score = 25.9 bits (56), Expect = 2.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 8  LMGDSSDNHPACVR 21
          L GD SDN P    
Sbjct: 12 LTGDESDNLPGVKG 25


>d1xyna_ b.29.1.11 (A:) Xylanase II {Trichoderma reesei, xynI
           [TaxId: 51453]}
          Length = 178

 Score = 24.2 bits (53), Expect = 8.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 100 PLSHYFIASSHNTYLTGHQLKGESSVD 126
           PL  Y+I   ++ Y     +KG  + D
Sbjct: 72  PLVEYYIMEDNHNYPAQGTVKGTVTSD 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,720
Number of extensions: 32537
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 17
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)