Query psy9840
Match_columns 126
No_of_seqs 107 out of 434
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 9.9E-57 2.2E-61 333.2 1.6 104 17-120 2-105 (119)
2 KOG1589|consensus 100.0 3.6E-56 7.8E-61 328.0 2.6 111 12-123 2-112 (118)
3 KOG1590|consensus 100.0 2.4E-45 5.2E-50 274.6 4.1 101 20-120 10-113 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.9 0.00032 6.8E-09 47.5 0.6 69 44-114 13-86 (87)
5 KOG1623|consensus 92.7 0.12 2.6E-06 42.9 3.3 77 36-114 130-211 (243)
6 PF15048 OSTbeta: Organic solu 57.6 13 0.00027 28.4 3.1 43 76-118 23-68 (125)
7 KOG1623|consensus 35.7 41 0.00089 28.0 3.1 61 54-115 34-94 (243)
8 COG5557 Polysulphide reductase 32.0 24 0.00053 31.4 1.2 67 18-87 263-342 (401)
9 PF14795 Leucyl-specific: Leuc 29.4 19 0.0004 24.0 0.1 14 24-39 43-56 (56)
10 cd00928 Cyt_c_Oxidase_VIIa Cyt 20.1 45 0.00097 22.0 0.5 25 56-80 26-50 (55)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=9.9e-57 Score=333.20 Aligned_cols=104 Identities=58% Similarity=0.977 Sum_probs=100.4
Q ss_pred CcccchhhhhCCCCCCccccccccccchhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhh
Q psy9840 17 VPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFV 96 (126)
Q Consensus 17 ~p~~~~~~~~~paGp~T~hFWgP~~kWgl~lAgl~D~~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~~n~~~ 96 (126)
+|+.++++||||+||+|||||||++|||||||||+|++||||+||++||+|||+||+||||||++|+||||+||+||++|
T Consensus 2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 81 (119)
T PF03650_consen 2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN 81 (119)
T ss_pred hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccccCC
Q psy9840 97 AATSIYQLTRAYLYQQEQKVSSAL 120 (126)
Q Consensus 97 ~~~q~~Ql~R~~~y~~~~~~~~~~ 120 (126)
+++|+||++|+++|++.++++.++
T Consensus 82 ~~~q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 82 ATTQLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred HHHHHHHHHHHHHHHhhcCchhHH
Confidence 999999999999999988876643
No 2
>KOG1589|consensus
Probab=100.00 E-value=3.6e-56 Score=328.02 Aligned_cols=111 Identities=69% Similarity=1.139 Sum_probs=105.0
Q ss_pred hhhhcCcccchhhhhCCCCCCccccccccccchhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhh
Q psy9840 12 AVDRFVPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFS 91 (126)
Q Consensus 12 ~~~~~~p~~~~~~~~~paGp~T~hFWgP~~kWgl~lAgl~D~~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~ 91 (126)
..|+++ .++|++||||+||||||||||++|||||+|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+
T Consensus 2 ~~~~~~-~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~Lfs 80 (118)
T KOG1589|consen 2 AADKFV-AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFS 80 (118)
T ss_pred cHHHHH-HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhH
Confidence 467777 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhccccccccCCCCC
Q psy9840 92 VNVFVAATSIYQLTRAYLYQQEQKVSSALPAP 123 (126)
Q Consensus 92 ~n~~~~~~q~~Ql~R~~~y~~~~~~~~~~~~~ 123 (126)
||+|++++|+|||.|+++|++.++..+.++++
T Consensus 81 VN~f~~~tg~~QL~Ri~~y~~~~~~~~~~~~~ 112 (118)
T KOG1589|consen 81 VNFFVAITGIYQLTRIANYQQQQKALEGESEQ 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999888777766544
No 3
>KOG1590|consensus
Probab=100.00 E-value=2.4e-45 Score=274.60 Aligned_cols=101 Identities=23% Similarity=0.412 Sum_probs=93.1
Q ss_pred cchhhhhCCCCCC---ccccccccccchhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhh
Q psy9840 20 KARPLWEHPAGPK---TVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFV 96 (126)
Q Consensus 20 ~~~~~~~~paGp~---T~hFWgP~~kWgl~lAgl~D~~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~~n~~~ 96 (126)
++..+.+++-+++ |||||||++|||||||+|.||+|+||.||++||+|||+||.+||||+|.|+||||+||+||++|
T Consensus 10 ~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N 89 (132)
T KOG1590|consen 10 RFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATN 89 (132)
T ss_pred HHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhh
Confidence 4456667777765 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhccccccccCC
Q psy9840 97 AATSIYQLTRAYLYQQEQKVSSAL 120 (126)
Q Consensus 97 ~~~q~~Ql~R~~~y~~~~~~~~~~ 120 (126)
+.+|++|++|+++|+|....++++
T Consensus 90 ~taQ~~Qg~Rf~~~~Y~~~~~e~~ 113 (132)
T KOG1590|consen 90 ETAQLAQGSRFLNYNYGSTGEEKK 113 (132)
T ss_pred HHHHHHHHHHHHHHHhcccchhhc
Confidence 999999999999999987766653
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.89 E-value=0.00032 Score=47.54 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=59.5
Q ss_pred hhhhhhcccC-----CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhHHHHHHHHHHhhcccc
Q psy9840 44 GLVIAGIGDL-----TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQ 114 (126)
Q Consensus 44 gl~lAgl~D~-----~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~~n~~~~~~q~~Ql~R~~~y~~~~ 114 (126)
.+-++++.|+ +|..|.+|..+..+..+-+.+|.+|.+.+ +|+.++.+|++-...+.+|+.=++.|...+
T Consensus 13 ~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 13 IMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred HHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCCCC
Confidence 3444455554 79999999999999999999999999998 599999999999999999999888887654
No 5
>KOG1623|consensus
Probab=92.69 E-value=0.12 Score=42.87 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=65.3
Q ss_pred cccccccchhhhhhcccC-----CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhHHHHHHHHHHhh
Q psy9840 36 FWAPMFKWGLVIAGIGDL-----TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLY 110 (126)
Q Consensus 36 FWgP~~kWgl~lAgl~D~-----~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~~n~~~~~~q~~Ql~R~~~y 110 (126)
+-+-++|=....|+++|| +|..|.+....+.|+.+.+..|+=|.+.+ +|..+..-|+.-...++.|+.=+.+|
T Consensus 130 ~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y 207 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKY 207 (243)
T ss_pred hhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhc
Confidence 445556666667777887 58999999999999999999999999988 99999999999999999999988776
Q ss_pred cccc
Q psy9840 111 QQEQ 114 (126)
Q Consensus 111 ~~~~ 114 (126)
....
T Consensus 208 ~~~~ 211 (243)
T KOG1623|consen 208 PKTT 211 (243)
T ss_pred CCCc
Confidence 5544
No 6
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=57.59 E-value=13 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.5
Q ss_pred hhhhhee---ecccchhhhhhhhhhhHHHHHHHHHHhhcccccccc
Q psy9840 76 SRYSLVI---IPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQKVSS 118 (126)
Q Consensus 76 ~Rya~~I---~PrNy~L~~~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 118 (126)
|+|.+++ +|-||.+++--+.....++.-|.|-++-++..|..+
T Consensus 23 mlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~ 68 (125)
T PF15048_consen 23 MLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQP 68 (125)
T ss_pred HHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccccc
Confidence 5666665 799999999999999999999999999988777664
No 7
>KOG1623|consensus
Probab=35.66 E-value=41 Score=28.03 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhHHHHHHHHHHhhccccc
Q psy9840 54 TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQK 115 (126)
Q Consensus 54 ~rppe~IS~~mt~aL~~tg~iw~Rya~~I~PrNy~L~~~n~~~~~~q~~Ql~R~~~y~~~~~ 115 (126)
+|..|.+|.-=-..=.+-+++|+||.+...= .+++-.+|.+....+..=+.=++-|...++
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~~k~ 94 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAPKKK 94 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecCchh
Confidence 7889998876666666788999999965444 799999999999999988888877766544
No 8
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=31.98 E-value=24 Score=31.43 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=50.5
Q ss_pred cccchhhhhCCCCCCccccccccccchhhhhhccc---------CCCCccccccccchhHHHhhHHHhhhhheee----c
Q psy9840 18 PSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGD---------LTRPAEKLSISQSSALAATGLIWSRYSLVII----P 84 (126)
Q Consensus 18 p~~~~~~~~~paGp~T~hFWgP~~kWgl~lAgl~D---------~~rppe~IS~~mt~aL~~tg~iw~Rya~~I~----P 84 (126)
-...+.-|.+--+|-+.|||. ++=|.+|++|.+= +.++-..| .+.+++.+.|..+-||-+.|. |
T Consensus 263 e~~l~eala~vF~~~~g~Fls-v~Fwl~vl~g~a~pl~ll~~pk~~nd~r~l--~~a~~l~vf~~~~egwrl~i~gqv~~ 339 (401)
T COG5557 263 ELILREALALVFLPTAGDFLS-VMFWLEVLLGMAFPLVLLRVPKLRNDSRML--FLAALLAVFGVFCEGWRLTISGQVVA 339 (401)
T ss_pred hhHHHHHHHHhhcccchhHHH-HHHHHHHHHhcccceEEEEccccccceeee--eHHHHHHHHHHHhhcEEEEeeeEEec
Confidence 344566677777888999999 8889999997632 33343344 678899999999999988876 6
Q ss_pred ccc
Q psy9840 85 KNW 87 (126)
Q Consensus 85 rNy 87 (126)
.||
T Consensus 340 ~n~ 342 (401)
T COG5557 340 FNY 342 (401)
T ss_pred ccc
Confidence 775
No 9
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=29.42 E-value=19 Score=24.03 Aligned_cols=14 Identities=50% Similarity=1.101 Sum_probs=9.0
Q ss_pred hhhCCCCCCccccccc
Q psy9840 24 LWEHPAGPKTVFFWAP 39 (126)
Q Consensus 24 ~~~~paGp~T~hFWgP 39 (126)
+..|.-| |+|||-|
T Consensus 43 LR~hedG--~~h~WKP 56 (56)
T PF14795_consen 43 LRPHEDG--TLHFWKP 56 (56)
T ss_dssp EEE-TTS--SEEEEEE
T ss_pred cccCCCC--eEeecCC
Confidence 3345544 8999987
No 10
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=20.13 E-value=45 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred CccccccccchhHHHhhHHHhhhhh
Q psy9840 56 PAEKLSISQSSALAATGLIWSRYSL 80 (126)
Q Consensus 56 ppe~IS~~mt~aL~~tg~iw~Rya~ 80 (126)
+.|++-..-|.+||+-|..++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l 50 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLL 50 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 3478888999999999999987765
Done!