Query psy9840
Match_columns 126
No_of_seqs 107 out of 434
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 18.5 46 0.0016 26.1 1.5 34 31-64 158-200 (231)
2 3a5p_A Haemagglutinin I; lecti 17.4 33 0.0011 23.9 0.4 14 23-36 39-52 (104)
3 3r8n_B 30S ribosomal protein S 13.5 54 0.0018 25.4 0.7 24 41-64 169-192 (218)
4 2peb_A Putative dioxygenase; s 13.1 67 0.0023 23.2 1.1 29 6-34 26-54 (122)
5 2vqe_B 30S ribosomal protein S 13.1 55 0.0019 26.1 0.7 24 40-63 177-200 (256)
6 3e7j_A Heparinase II protein; 13.1 94 0.0032 28.0 2.3 26 33-59 178-203 (749)
7 2izx_A CAMP-dependent protein 12.6 93 0.0032 17.4 1.4 26 75-100 14-39 (41)
8 2p8i_A Putative dioxygenase; Y 11.3 92 0.0031 22.2 1.3 29 6-34 27-57 (117)
9 3n91_A Uncharacterized protein 11.0 33 0.0011 28.4 -1.2 24 79-102 159-182 (323)
10 1vi6_A 30S ribosomal protein S 10.8 65 0.0022 24.9 0.4 24 40-63 134-157 (208)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=18.48 E-value=46 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.0
Q ss_pred CCccccccc---------cccchhhhhhcccCCCCcccccccc
Q psy9840 31 PKTVFFWAP---------MFKWGLVIAGIGDLTRPAEKLSISQ 64 (126)
Q Consensus 31 p~T~hFWgP---------~~kWgl~lAgl~D~~rppe~IS~~m 64 (126)
|.-+..-.| ..|=+||+.|+.|.+-||+.|+.+-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 555555555 5788999999999999999997654
No 2
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=17.37 E-value=33 Score=23.91 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=10.6
Q ss_pred hhhhCCCCCCcccc
Q psy9840 23 PLWEHPAGPKTVFF 36 (126)
Q Consensus 23 ~~~~~paGp~T~hF 36 (126)
+.--+..||||+|=
T Consensus 39 pitfseigpktvhq 52 (104)
T 3a5p_A 39 PITFSEIGPKTVHQ 52 (104)
T ss_dssp CEEEECCSCCCSSS
T ss_pred ceeehhcCCceeee
Confidence 44457899999993
No 3
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=13.46 E-value=54 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred ccchhhhhhcccCCCCcccccccc
Q psy9840 41 FKWGLVIAGIGDLTRPAEKLSISQ 64 (126)
Q Consensus 41 ~kWgl~lAgl~D~~rppe~IS~~m 64 (126)
.+=+||+.||.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 466899999999999999987654
No 4
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=13.11 E-value=67 Score=23.15 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHhhhhhcCcccchhhhhCCCCCCcc
Q psy9840 6 YRAAISAVDRFVPSKARPLWEHPAGPKTV 34 (126)
Q Consensus 6 y~~~~~~~~~~~p~~~~~~~~~paGp~T~ 34 (126)
-++|+.++..-++-.+-+++..|+||-.+
T Consensus 26 A~~Lre~i~~~F~l~vgr~h~~pVGPHp~ 54 (122)
T 2peb_A 26 AARVREGLGARFEVQLGRWFDKPIGPHPK 54 (122)
T ss_dssp HHHHHHHHHHHSCCEEEEEESSCCTTCSS
T ss_pred HHHHHHHHHHhcCeeecCCccccCCCCCC
Confidence 35666666666677788999999999643
No 5
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=13.10 E-value=55 Score=26.08 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.5
Q ss_pred cccchhhhhhcccCCCCccccccc
Q psy9840 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (126)
Q Consensus 40 ~~kWgl~lAgl~D~~rppe~IS~~ 63 (126)
..|=+||+.||.|.+-||+.|+.+
T Consensus 177 A~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 177 ARKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp HHHTTCCCEECCCTTSCGGGCSEE
T ss_pred HHHcCCCEEEEecCCCCchhcceE
Confidence 356799999999999999998754
No 6
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=13.08 E-value=94 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=21.6
Q ss_pred ccccccccccchhhhhhcccCCCCccc
Q psy9840 33 TVFFWAPMFKWGLVIAGIGDLTRPAEK 59 (126)
Q Consensus 33 T~hFWgP~~kWgl~lAgl~D~~rppe~ 59 (126)
+.|.|.++++ |+.+|+|+=+...||.
T Consensus 178 ~~~NWn~vc~-Gll~aALAL~~d~pe~ 203 (749)
T 3e7j_A 178 GAASEWMIMR-DLLSVGIAIYDEFPEM 203 (749)
T ss_dssp SGGGTHHHHT-HHHHHHHHTTTTCTHH
T ss_pred CCChHHHHHH-HHHHHHHHHcCCcHHH
Confidence 7899999999 9999998766666765
No 7
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=12.62 E-value=93 Score=17.41 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.5
Q ss_pred HhhhhheeecccchhhhhhhhhhhHH
Q psy9840 75 WSRYSLVIIPKNWSLFSVNVFVAATS 100 (126)
Q Consensus 75 w~Rya~~I~PrNy~L~~~n~~~~~~q 100 (126)
++|-.+.-+|.|.+-|+.+.|....+
T Consensus 14 ~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 14 YTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 56778888999999999998876543
No 8
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=11.31 E-value=92 Score=22.20 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHhhhhhcCc--ccchhhhhCCCCCCcc
Q psy9840 6 YRAAISAVDRFVP--SKARPLWEHPAGPKTV 34 (126)
Q Consensus 6 y~~~~~~~~~~~p--~~~~~~~~~paGp~T~ 34 (126)
-++|+.++..-++ -.+-+++..|+||-.+
T Consensus 27 A~~Lre~i~~~F~~~l~vgr~~~~pVGPHp~ 57 (117)
T 2p8i_A 27 AWTLREQIEAHWSGKLQLGRFHERPVGPHPM 57 (117)
T ss_dssp HHHHHHHHHHHTTTCSEECCCBSSCCTTCSS
T ss_pred HHHHHHHHHHhccccEeEecCccccCCCCCC
Confidence 3567777776674 4566899999999654
No 9
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=11.01 E-value=33 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.2
Q ss_pred hheeecccchhhhhhhhhhhHHHH
Q psy9840 79 SLVIIPKNWSLFSVNVFVAATSIY 102 (126)
Q Consensus 79 a~~I~PrNy~L~~~n~~~~~~q~~ 102 (126)
.|.|+|++|.|+++...|--.|.|
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Y 182 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEY 182 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEE
Confidence 589999999999999999877766
No 10
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=10.77 E-value=65 Score=24.92 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=20.8
Q ss_pred cccchhhhhhcccCCCCccccccc
Q psy9840 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (126)
Q Consensus 40 ~~kWgl~lAgl~D~~rppe~IS~~ 63 (126)
..|=+||+.|+.|.+-||+.|+..
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 457899999999999999998754
Done!