Query psy9840
Match_columns 126
No_of_seqs 107 out of 434
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 21:02:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9840.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9840hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 15.3 21 0.0015 25.6 0.7 33 31-63 150-191 (218)
2 d2fhea1 a.45.1.1 (A:81-216) Cl 15.1 37 0.0027 21.7 1.9 26 19-45 106-131 (136)
3 d2gsta1 a.45.1.1 (A:85-217) Cl 13.6 46 0.0034 20.7 2.1 25 19-44 107-131 (133)
4 d2p8ia1 d.58.55.1 (A:1-115) Pu 13.5 34 0.0024 22.7 1.3 31 7-37 27-59 (115)
5 d1gsua1 a.45.1.1 (A:85-217) Cl 12.0 52 0.0038 20.4 1.9 26 19-45 107-132 (133)
6 d2uubb1 c.23.15.1 (B:7-240) Ri 11.2 29 0.0021 25.1 0.5 23 41-63 172-194 (234)
7 d1v54j_ f.23.4.1 (J:) Mitochon 10.7 22 0.0016 21.4 -0.4 24 57-80 27-50 (58)
8 d2e74f1 f.23.25.1 (F:1-32) Pet 9.9 66 0.0048 16.9 1.5 16 65-80 7-22 (32)
9 d2c4ja1 a.45.1.1 (A:86-218) Cl 7.9 96 0.007 19.2 2.0 25 19-44 107-131 (133)
10 d3gtub1 a.45.1.1 (B:85-224) Cl 6.3 39 0.0028 21.1 -0.7 7 38-44 129-135 (140)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=15.29 E-value=21 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCcccccccc---------ccchhhhhhcccCCCCccccccc
Q psy9840 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (126)
Q Consensus 31 p~T~hFWgP~---------~kWgl~lAgl~D~~rppe~IS~~ 63 (126)
|.-++.-.|. .+=+||+.||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 6666666664 45789999999999999999765
No 2
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=15.05 E-value=37 Score=21.66 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=18.4
Q ss_pred ccchhhhhCCCCCCccccccccccchh
Q psy9840 19 SKARPLWEHPAGPKTVFFWAPMFKWGL 45 (126)
Q Consensus 19 ~~~~~~~~~paGp~T~hFWgP~~kWgl 45 (126)
+.++++.+|+. .....+.+|.++||-
T Consensus 106 P~Ik~yl~S~~-~~~~P~~~~~a~~~~ 131 (136)
T d2fhea1 106 PSIKAYMESNR-FIKWPLNGWHAQFGG 131 (136)
T ss_dssp HHHHHHHTSSS-CCCSCSSCTTCSSSC
T ss_pred HHHHHHHcCcc-cCCCCCCCCcCccCC
Confidence 45677777754 334668899999974
No 3
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.62 E-value=46 Score=20.70 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=16.2
Q ss_pred ccchhhhhCCCCCCccccccccccch
Q psy9840 19 SKARPLWEHPAGPKTVFFWAPMFKWG 44 (126)
Q Consensus 19 ~~~~~~~~~paGp~T~hFWgP~~kWg 44 (126)
+.++++.+++.=++ .-|.+|.++||
T Consensus 107 P~ik~yl~s~~~~~-~p~~~~~a~~~ 131 (133)
T d2gsta1 107 KKISAYMKSSRYLS-TPIFSKLAQWS 131 (133)
T ss_dssp HHHHHHHTSTTCCC-CCCSCTTSSSS
T ss_pred HHHHHHHhCCCcCC-CCCCCcccCcC
Confidence 45677776654323 23669999997
No 4
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=13.47 E-value=34 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=21.8
Q ss_pred HHHHhhhhhcCc--ccchhhhhCCCCCCccccc
Q psy9840 7 RAAISAVDRFVP--SKARPLWEHPAGPKTVFFW 37 (126)
Q Consensus 7 ~~~~~~~~~~~p--~~~~~~~~~paGp~T~hFW 37 (126)
..|+.++..-++ -.+-+++..|+||-.+..|
T Consensus 27 ~~Lr~~i~~~f~~~~~~gr~~~kpVGPHp~~~~ 59 (115)
T d2p8ia1 27 WTLREQIEAHWSGKLQLGRFHERPVGPHPMWSY 59 (115)
T ss_dssp HHHHHHHHHHTTTCSEECCCBSSCCTTCSSEEE
T ss_pred HHHHHHHHHhcccceEEeecccCccCCCCCeEE
Confidence 456666666666 3457999999999766544
No 5
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.98 E-value=52 Score=20.43 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=15.8
Q ss_pred ccchhhhhCCCCCCccccccccccchh
Q psy9840 19 SKARPLWEHPAGPKTVFFWAPMFKWGL 45 (126)
Q Consensus 19 ~~~~~~~~~paGp~T~hFWgP~~kWgl 45 (126)
+.++++.+++. .+.--+++|++|||.
T Consensus 107 P~Ik~yl~s~~-~~~~P~~~~~~~~~~ 132 (133)
T d1gsua1 107 EKISAYMRSGR-FMKAPIFWYTALWNN 132 (133)
T ss_dssp HHHHHHHTSSS-CCCCCCSCTTCSSSC
T ss_pred HHHHHHHcCCC-cCCCCCCCcccccCC
Confidence 34566666644 222335679999984
No 6
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=11.24 E-value=29 Score=25.13 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=19.7
Q ss_pred ccchhhhhhcccCCCCccccccc
Q psy9840 41 FKWGLVIAGIGDLTRPAEKLSIS 63 (126)
Q Consensus 41 ~kWgl~lAgl~D~~rppe~IS~~ 63 (126)
.+=+||+-||.|.+-+|+.|+.+
T Consensus 172 ~~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 172 RKLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHHTCCEEEEECTTSCGGGCSEE
T ss_pred HhhCCCEEEEeecCCCccCCcEE
Confidence 36789999999999999998753
No 7
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.75 E-value=22 Score=21.36 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.2
Q ss_pred ccccccccchhHHHhhHHHhhhhh
Q psy9840 57 AEKLSISQSSALAATGLIWSRYSL 80 (126)
Q Consensus 57 pe~IS~~mt~aL~~tg~iw~Rya~ 80 (126)
+|.|-.+-|.+||+-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999999887764
No 8
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.90 E-value=66 Score=16.89 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.4
Q ss_pred chhHHHhhHHHhhhhh
Q psy9840 65 SSALAATGLIWSRYSL 80 (126)
Q Consensus 65 t~aL~~tg~iw~Rya~ 80 (126)
.+|+.-+|+||.-|.+
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 5788899999998865
No 9
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.92 E-value=96 Score=19.17 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.8
Q ss_pred ccchhhhhCCCCCCccccccccccch
Q psy9840 19 SKARPLWEHPAGPKTVFFWAPMFKWG 44 (126)
Q Consensus 19 ~~~~~~~~~paGp~T~hFWgP~~kWg 44 (126)
+.+++..+++.= ....+.+|+++||
T Consensus 107 P~ik~yl~s~~~-~~~p~~~~~a~~g 131 (133)
T d2c4ja1 107 EKISAYMKSSRF-LPRPVFSKMAVWG 131 (133)
T ss_dssp HHHHHHHHSTTC-CCCCSSCTTCSSS
T ss_pred HHHHHHHhCccc-CCCCCCCcccccC
Confidence 356677766432 2355889999998
No 10
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=39 Score=21.12 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=5.4
Q ss_pred cccccch
Q psy9840 38 APMFKWG 44 (126)
Q Consensus 38 gP~~kWg 44 (126)
+|.++||
T Consensus 129 ~~~~~~~ 135 (140)
T d3gtub1 129 NKMAQWG 135 (140)
T ss_dssp CTTSSSS
T ss_pred CCccccC
Confidence 7778886
Done!