Query psy9841
Match_columns 125
No_of_seqs 105 out of 403
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:03:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 5E-54 1.1E-58 319.0 3.2 99 17-115 2-100 (119)
2 KOG1589|consensus 100.0 1.2E-52 2.5E-57 310.2 2.7 104 12-116 2-105 (118)
3 KOG1590|consensus 100.0 4.7E-43 1E-47 263.0 3.3 96 20-115 10-108 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.1 0.0015 3.2E-08 44.1 0.1 68 45-114 14-86 (87)
5 KOG1623|consensus 84.7 0.67 1.4E-05 38.5 2.1 78 36-115 130-212 (243)
6 PF14795 Leucyl-specific: Leuc 30.0 18 0.00039 24.3 0.1 14 24-39 43-56 (56)
7 KOG1623|consensus 24.2 76 0.0016 26.5 2.8 60 54-114 34-93 (243)
8 PRK05299 rpsB 30S ribosomal pr 17.2 51 0.0011 27.2 0.4 33 31-63 158-199 (258)
9 CHL00067 rps2 ribosomal protei 17.0 52 0.0011 26.6 0.4 33 31-63 162-203 (230)
10 TIGR01011 rpsB_bact ribosomal 16.4 56 0.0012 26.3 0.4 33 31-63 156-197 (225)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=5e-54 Score=319.03 Aligned_cols=99 Identities=54% Similarity=0.898 Sum_probs=97.3
Q ss_pred CcccchhhhhCCCCCCcccccccccccchhhhhcccCCCCccccccccchhHHHHhHHHhhhhheeeccchhhhhhhhhh
Q psy9841 17 VPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNMFV 96 (125)
Q Consensus 17 ~~~~~~~~~~~p~Gp~T~hFWgPv~kWgi~iA~l~D~~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~ 96 (125)
+|+.++++|+||+||||||||||++|||||||||+|++||||+||++||+|||+||+||||||++|+||||+||+||++|
T Consensus 2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 81 (119)
T PF03650_consen 2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN 81 (119)
T ss_pred hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhhhccchhhh
Q psy9841 97 ALPCVKLELEDLGECLSNL 115 (125)
Q Consensus 97 ~~~q~~ql~R~~~~~~sq~ 115 (125)
+++|+||++|+++|+++|.
T Consensus 82 ~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 82 ATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999987
No 2
>KOG1589|consensus
Probab=100.00 E-value=1.2e-52 Score=310.22 Aligned_cols=104 Identities=63% Similarity=1.043 Sum_probs=99.2
Q ss_pred hhhhcCcccchhhhhCCCCCCcccccccccccchhhhhcccCCCCccccccccchhHHHHhHHHhhhhheeeccchhhhh
Q psy9841 12 AVDRFVPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFS 91 (125)
Q Consensus 12 ~~~~~~~~~~~~~~~~p~Gp~T~hFWgPv~kWgi~iA~l~D~~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a 91 (125)
..|+++ +++|++||||+||||||||||++|||||+|||+|++||||+||+.|++||++||+||+|||++|+||||+||+
T Consensus 2 ~~~~~~-~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~Lfs 80 (118)
T KOG1589|consen 2 AADKFV-AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFS 80 (118)
T ss_pred cHHHHH-HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhH
Confidence 356677 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHhhhccchhhhh
Q psy9841 92 VNMFVALPCVKLELEDLGECLSNLL 116 (125)
Q Consensus 92 ~n~~~~~~q~~ql~R~~~~~~sq~~ 116 (125)
||+|++++|+|||.|+++|+..|..
T Consensus 81 VN~f~~~tg~~QL~Ri~~y~~~~~~ 105 (118)
T KOG1589|consen 81 VNFFVAITGIYQLTRIANYQQQQKA 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999777663
No 3
>KOG1590|consensus
Probab=100.00 E-value=4.7e-43 Score=262.95 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=90.4
Q ss_pred cchhhhhCCCCCC---cccccccccccchhhhhcccCCCCccccccccchhHHHHhHHHhhhhheeeccchhhhhhhhhh
Q psy9841 20 KARPLWEHPAGPK---TVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNMFV 96 (125)
Q Consensus 20 ~~~~~~~~p~Gp~---T~hFWgPv~kWgi~iA~l~D~~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~ 96 (125)
.+..+.+|+-+++ ||||||||+|||||||+|.||+|+||.|||+||+|||+||.+||||+|.|+||||+||+||++|
T Consensus 10 ~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N 89 (132)
T KOG1590|consen 10 RFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATN 89 (132)
T ss_pred HHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhh
Confidence 3456778888886 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhhhccchhhh
Q psy9841 97 ALPCVKLELEDLGECLSNL 115 (125)
Q Consensus 97 ~~~q~~ql~R~~~~~~sq~ 115 (125)
..+|++|++|.++|.+.-.
T Consensus 90 ~taQ~~Qg~Rf~~~~Y~~~ 108 (132)
T KOG1590|consen 90 ETAQLAQGSRFLNYNYGST 108 (132)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999998765
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.13 E-value=0.0015 Score=44.12 Aligned_cols=68 Identities=13% Similarity=0.276 Sum_probs=57.4
Q ss_pred hhhhhcccC-----CCCccccccccchhHHHHhHHHhhhhheeeccchhhhhhhhhhhhhhhHHHHhhhccchhh
Q psy9841 45 LVIAGIGDL-----TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNMFVALPCVKLELEDLGECLSN 114 (125)
Q Consensus 45 i~iA~l~D~-----~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~~~~q~~ql~R~~~~~~sq 114 (125)
+-++++.++ +|..|.+|..+..+..+-+.+|.+|.+.+ +|+.++.+|++-...+++++.=++.|...+
T Consensus 14 ~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 14 MFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred HHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCCCC
Confidence 344445453 78999999999999999999999999998 599999999999999999998777766543
No 5
>KOG1623|consensus
Probab=84.66 E-value=0.67 Score=38.51 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=63.6
Q ss_pred ccccccccchhhhhcccC-----CCCccccccccchhHHHHhHHHhhhhheeeccchhhhhhhhhhhhhhhHHHHhhhcc
Q psy9841 36 FWAPMFKWGLVIAGIGDL-----TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNMFVALPCVKLELEDLGE 110 (125)
Q Consensus 36 FWgPv~kWgi~iA~l~D~-----~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~~~~q~~ql~R~~~~ 110 (125)
+-+-++|=..-.|+++|+ +|..|.+..+.+.|+.+.+..|+=|.+.+ +|..+..-|+.-...++.|+.-+..|
T Consensus 130 ~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y 207 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKY 207 (243)
T ss_pred hhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhc
Confidence 455566666666777776 58899999999999999999999999999 89999988998888888888866666
Q ss_pred chhhh
Q psy9841 111 CLSNL 115 (125)
Q Consensus 111 ~~sq~ 115 (125)
.-++.
T Consensus 208 ~~~~~ 212 (243)
T KOG1623|consen 208 PKTTE 212 (243)
T ss_pred CCCcc
Confidence 55553
No 6
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=30.01 E-value=18 Score=24.25 Aligned_cols=14 Identities=50% Similarity=1.101 Sum_probs=9.2
Q ss_pred hhhCCCCCCccccccc
Q psy9841 24 LWEHPAGPKTVFFWAP 39 (125)
Q Consensus 24 ~~~~p~Gp~T~hFWgP 39 (125)
+..|.-| |+|||-|
T Consensus 43 LR~hedG--~~h~WKP 56 (56)
T PF14795_consen 43 LRPHEDG--TLHFWKP 56 (56)
T ss_dssp EEE-TTS--SEEEEEE
T ss_pred cccCCCC--eEeecCC
Confidence 3345555 8999987
No 7
>KOG1623|consensus
Probab=24.24 E-value=76 Score=26.50 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=47.0
Q ss_pred CCCccccccccchhHHHHhHHHhhhhheeeccchhhhhhhhhhhhhhhHHHHhhhccchhh
Q psy9841 54 TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNMFVALPCVKLELEDLGECLSN 114 (125)
Q Consensus 54 ~rppe~IS~~mt~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~~~~q~~ql~R~~~~~~sq 114 (125)
+|..|.+|+-=-..=.+-+++|+||.+...= .+++-.+|.+....+..-+.=.+-|...+
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~~k 93 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAPKK 93 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecCch
Confidence 7888998877666666788999999965544 79999999999888887776666665554
No 8
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=17.20 E-value=51 Score=27.21 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCcccccccc---------cccchhhhhcccCCCCccccccc
Q psy9841 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 p~T~hFWgPv---------~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
|.-+..-.|. .+=+||+.|+.|.+-+|+.|+.+
T Consensus 158 Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~Idyp 199 (258)
T PRK05299 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYP 199 (258)
T ss_pred CCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCccccee
Confidence 5555555554 45689999999999999998764
No 9
>CHL00067 rps2 ribosomal protein S2
Probab=17.05 E-value=52 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCcccccccc---------cccchhhhhcccCCCCccccccc
Q psy9841 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 p~T~hFWgPv---------~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
|.-+..-.|. .+=+||+.|+.|.+-+|+.|+.+
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idyp 203 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIP 203 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCcccccee
Confidence 6666666665 46899999999999999998754
No 10
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=16.39 E-value=56 Score=26.32 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=26.1
Q ss_pred CCcccccccc---------cccchhhhhcccCCCCccccccc
Q psy9841 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 p~T~hFWgPv---------~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
|.-+.+-.|. .+=+||+-|+.|.+-+|+.|+.+
T Consensus 156 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idyp 197 (225)
T TIGR01011 156 PDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYP 197 (225)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCccccee
Confidence 5566666665 45789999999999999998764
Done!