Query psy9841
Match_columns 125
No_of_seqs 105 out of 403
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:03:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 20.6 39 0.0013 26.5 1.6 34 31-64 158-200 (231)
2 3a5p_A Haemagglutinin I; lecti 18.9 29 0.00098 24.3 0.4 14 22-35 38-51 (104)
3 3r8n_B 30S ribosomal protein S 17.2 38 0.0013 26.3 0.7 24 41-64 169-192 (218)
4 2vqe_B 30S ribosomal protein S 17.2 37 0.0013 27.1 0.7 24 40-63 177-200 (256)
5 3e7j_A Heparinase II protein; 16.9 60 0.0021 29.3 2.1 26 33-59 178-203 (749)
6 3n91_A Uncharacterized protein 14.4 15 0.00052 30.4 -2.3 57 40-103 124-183 (323)
7 1vi6_A 30S ribosomal protein S 14.3 44 0.0015 25.9 0.4 24 40-63 134-157 (208)
8 2xzm_B RPS0E; ribosome, transl 11.7 64 0.0022 25.5 0.7 24 40-63 133-156 (241)
9 3bch_A 40S ribosomal protein S 11.0 64 0.0022 25.9 0.4 24 40-63 170-193 (253)
10 3j20_B 30S ribosomal protein S 9.9 73 0.0025 24.5 0.4 24 41-64 131-154 (202)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.56 E-value=39 Score=26.48 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCccccccc---------ccccchhhhhcccCCCCcccccccc
Q psy9841 31 PKTVFFWAP---------MFKWGLVIAGIGDLTRPAEKLSISQ 64 (125)
Q Consensus 31 p~T~hFWgP---------v~kWgi~iA~l~D~~rppe~IS~~m 64 (125)
|.-+..-.| ..+=|||+.|+.|.+-||+.|+.+-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 555555555 5789999999999999999998654
No 2
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=18.87 E-value=29 Score=24.33 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=11.0
Q ss_pred hhhhhCCCCCCccc
Q psy9841 22 RPLWEHPAGPKTVF 35 (125)
Q Consensus 22 ~~~~~~p~Gp~T~h 35 (125)
.+.--|+.||||+|
T Consensus 38 apitfseigpktvh 51 (104)
T 3a5p_A 38 APITFSEIGPKTVH 51 (104)
T ss_dssp CCEEEECCSCCCSS
T ss_pred cceeehhcCCceee
Confidence 34556889999999
No 3
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=17.24 E-value=38 Score=26.33 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.6
Q ss_pred cccchhhhhcccCCCCcccccccc
Q psy9841 41 FKWGLVIAGIGDLTRPAEKLSISQ 64 (125)
Q Consensus 41 ~kWgi~iA~l~D~~rppe~IS~~m 64 (125)
.+=+||+.||.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 567899999999999999987653
No 4
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=17.16 E-value=37 Score=27.08 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.9
Q ss_pred ccccchhhhhcccCCCCccccccc
Q psy9841 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 40 v~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
..|=|||+.|+.|.+-||+.|+.+
T Consensus 177 A~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 177 ARKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp HHHTTCCCEECCCTTSCGGGCSEE
T ss_pred HHHcCCCEEEEecCCCCchhcceE
Confidence 356799999999999999999865
No 5
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=16.93 E-value=60 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=21.8
Q ss_pred cccccccccccchhhhhcccCCCCccc
Q psy9841 33 TVFFWAPMFKWGLVIAGIGDLTRPAEK 59 (125)
Q Consensus 33 T~hFWgPv~kWgi~iA~l~D~~rppe~ 59 (125)
+.|.|.++++ |+.+|+|+=+...||.
T Consensus 178 ~~~NWn~vc~-Gll~aALAL~~d~pe~ 203 (749)
T 3e7j_A 178 GAASEWMIMR-DLLSVGIAIYDEFPEM 203 (749)
T ss_dssp SGGGTHHHHT-HHHHHHHHTTTTCTHH
T ss_pred CCChHHHHHH-HHHHHHHHHcCCcHHH
Confidence 7899999999 9999998766667765
No 6
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=14.43 E-value=15 Score=30.45 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=35.7
Q ss_pred ccccchhhhhcccCCCCcccccccc---chhHHHHhHHHhhhhheeeccchhhhhhhhhhhhhhhHH
Q psy9841 40 MFKWGLVIAGIGDLTRPAEKLSISQ---SSALAATGLIWSRYSLVIIPKNWSLFSVNMFVALPCVKL 103 (125)
Q Consensus 40 v~kWgi~iA~l~D~~rppe~IS~~m---t~aL~~tg~iw~Rys~~I~PrNy~L~a~n~~~~~~q~~q 103 (125)
-.+|.|||-=..+-.. .+.+++.- +...+--+ .|.|.|++|.|++++..|--.+.|+
T Consensus 124 ~~~YvLPL~I~s~~g~-dsIl~G~~~~~~p~~~~~~------~w~v~pkdyvLy~vky~N~y~G~Yl 183 (323)
T 3n91_A 124 SENYVIPLLMTNVQGA-DSILQGKPVVENPVLTNAG------DWSILPQNFVLYAVKYVNPWHGEYL 183 (323)
T ss_dssp SSCEEEEEEEEEEESS-SEECCCEESSSSCCTTCGG------GEEECCCSEEEEEEEEECTTCEEEE
T ss_pred CCeEEEEEEEEecCCC-ceeccCcccccCccccccc------ccccCCCcEEEEEEEEeccCceEEE
Confidence 6788888765433221 13333311 22222211 5899999999999999998888774
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=14.31 E-value=44 Score=25.92 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=21.1
Q ss_pred ccccchhhhhcccCCCCccccccc
Q psy9841 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 40 v~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
..|=|||+.|+.|.+-||+.|+..
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 467899999999999999998764
No 8
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=11.65 E-value=64 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.0
Q ss_pred ccccchhhhhcccCCCCccccccc
Q psy9841 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 40 v~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
..|=+||+-||.|.+-||+.|+..
T Consensus 133 A~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 133 ASYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp HTTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHHhCCCEEEEecCCCCcccccEE
Confidence 467899999999999999998764
No 9
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=10.96 E-value=64 Score=25.86 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.1
Q ss_pred ccccchhhhhcccCCCCccccccc
Q psy9841 40 MFKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 40 v~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
..|=|||+.||.|.+-||+.|+..
T Consensus 170 A~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 170 ASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEEcCCCCcccCceE
Confidence 468899999999999999998764
No 10
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=9.94 E-value=73 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.0
Q ss_pred cccchhhhhcccCCCCcccccccc
Q psy9841 41 FKWGLVIAGIGDLTRPAEKLSISQ 64 (125)
Q Consensus 41 ~kWgi~iA~l~D~~rppe~IS~~m 64 (125)
.|=+||+.||.|.+-||+.|+..-
T Consensus 131 ~~l~IP~Ial~DTn~~p~~Vd~~I 154 (202)
T 3j20_B 131 VEIGIPIVALVDTENLLSYVDLAI 154 (202)
T ss_dssp HHHTCCEEEEECTTCCCTTCCEEE
T ss_pred HHcCCCEEEEEcCCCCccccCEEE
Confidence 456899999999999999987643
Done!