Query psy9841
Match_columns 125
No_of_seqs 105 out of 403
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 21:03:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 19.7 14 0.001 26.5 0.7 33 31-63 150-191 (218)
2 d2uubb1 c.23.15.1 (B:7-240) Ri 14.9 20 0.0014 26.1 0.5 23 41-63 172-194 (234)
3 d1l8na2 d.92.2.2 (A:4-142) alp 13.6 23 0.0017 23.2 0.5 36 88-125 102-139 (139)
4 d1qbaa4 d.92.2.1 (A:201-337) B 13.2 13 0.00092 23.6 -1.0 45 78-124 89-137 (137)
5 d2gsta1 a.45.1.1 (A:85-217) Cl 11.0 41 0.003 20.9 1.1 24 20-44 108-131 (133)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 9.4 73 0.0053 16.8 1.6 16 65-80 7-22 (32)
7 d2fhea1 a.45.1.1 (A:81-216) Cl 8.9 53 0.0039 20.8 1.1 25 20-45 107-131 (136)
8 d1v54j_ f.23.4.1 (J:) Mitochon 8.9 29 0.0021 20.8 -0.3 24 57-80 27-50 (58)
9 d2p8ia1 d.58.55.1 (A:1-115) Pu 8.6 62 0.0045 21.4 1.3 31 7-37 27-59 (115)
10 d1gsua1 a.45.1.1 (A:85-217) Cl 7.3 69 0.0051 19.8 1.1 25 20-45 108-132 (133)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=19.68 E-value=14 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCcccccccc---------cccchhhhhcccCCCCccccccc
Q psy9841 31 PKTVFFWAPM---------FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 31 p~T~hFWgPv---------~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
|.-+..-.|. .+=+||+.||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 6666666664 46789999999999999999865
No 2
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=14.89 E-value=20 Score=26.12 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.1
Q ss_pred cccchhhhhcccCCCCccccccc
Q psy9841 41 FKWGLVIAGIGDLTRPAEKLSIS 63 (125)
Q Consensus 41 ~kWgi~iA~l~D~~rppe~IS~~ 63 (125)
.+=+||+-||.|.+-+|+.|+.+
T Consensus 172 ~~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 172 RKLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHHTCCEEEEECTTSCGGGCSEE
T ss_pred HhhCCCEEEEeecCCCccCCcEE
Confidence 46789999999999999999864
No 3
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.59 E-value=23 Score=23.17 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=23.1
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccc--hhhhhhhcccCCCC
Q psy9841 88 SLFSVNMFVALPCVKLELEDLGEC--LSNLLAGIENQPRN 125 (125)
Q Consensus 88 ~L~a~n~~~~~~q~~ql~R~~~~~--~sq~~~~i~~~~~~ 125 (125)
.+.+.+-.-..-+.|.|.|.++-. +++. .|.++|+|
T Consensus 102 vI~G~~~~G~lYGvf~Ll~~lq~g~~l~~l--~i~~~Pkn 139 (139)
T d1l8na2 102 YIIGKTDAGVLYGVFHFLRLLQMGENIAQL--SIIEQPKN 139 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCCTTC--EEEECCSC
T ss_pred EEEecCCchhHHHHHHHHHHHHcCCCCCCC--ccccCCCC
Confidence 344555555667778888887543 3333 36899998
No 4
>d1qbaa4 d.92.2.1 (A:201-337) Bacterial chitobiase, Domain 2 {Serratia marcescens [TaxId: 615]}
Probab=13.19 E-value=13 Score=23.63 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=23.7
Q ss_pred hhheeeccchhhhhhhh---hhhhhhhHHHHhh-hccchhhhhhhcccCCC
Q psy9841 78 YSLVIIPKNWSLFSVNM---FVALPCVKLELED-LGECLSNLLAGIENQPR 124 (125)
Q Consensus 78 ys~~I~PrNy~L~a~n~---~~~~~q~~ql~R~-~~~~~sq~~~~i~~~~~ 124 (125)
|.+.|.+++-.+-+-+. +.++.-+.||... ....+ ... .|||.||
T Consensus 89 Y~L~i~~~~I~I~a~~~~G~~yglqTL~QLi~~~~~~~i-p~~-~I~D~PR 137 (137)
T d1qbaa4 89 YELKIGKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKI-ATL-DASDAPR 137 (137)
T ss_dssp EEEEECSSCEEEEESSHHHHHHHHHHHHHHSCSSSCCEE-EEE-EEEECCS
T ss_pred eEEEEeCCeEEEEECCHHHHHHHHHHHHHHHhccCCCcc-ccE-EEEeCCC
Confidence 77778887765554432 3444445555422 11111 111 3799997
No 5
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.98 E-value=41 Score=20.92 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=15.7
Q ss_pred cchhhhhCCCCCCcccccccccccc
Q psy9841 20 KARPLWEHPAGPKTVFFWAPMFKWG 44 (125)
Q Consensus 20 ~~~~~~~~p~Gp~T~hFWgPv~kWg 44 (125)
.+++.+.++.=++ .-|++|.++||
T Consensus 108 ~ik~yl~s~~~~~-~p~~~~~a~~~ 131 (133)
T d2gsta1 108 KISAYMKSSRYLS-TPIFSKLAQWS 131 (133)
T ss_dssp HHHHHHTSTTCCC-CCCSCTTSSSS
T ss_pred HHHHHHhCCCcCC-CCCCCcccCcC
Confidence 4566776664333 23669999997
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.36 E-value=73 Score=16.81 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.5
Q ss_pred chhHHHHhHHHhhhhh
Q psy9841 65 SSALAATGLIWSRYSL 80 (125)
Q Consensus 65 t~aL~~tg~iw~Rys~ 80 (125)
.+|+.-+|+||.-|.+
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 5788999999998865
No 7
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=8.90 E-value=53 Score=20.81 Aligned_cols=25 Identities=8% Similarity=-0.149 Sum_probs=17.7
Q ss_pred cchhhhhCCCCCCcccccccccccch
Q psy9841 20 KARPLWEHPAGPKTVFFWAPMFKWGL 45 (125)
Q Consensus 20 ~~~~~~~~p~Gp~T~hFWgPv~kWgi 45 (125)
.+++.+.|+. .+...+.+|.++||-
T Consensus 107 ~Ik~yl~S~~-~~~~P~~~~~a~~~~ 131 (136)
T d2fhea1 107 SIKAYMESNR-FIKWPLNGWHAQFGG 131 (136)
T ss_dssp HHHHHHTSSS-CCCSCSSCTTCSSSC
T ss_pred HHHHHHcCcc-cCCCCCCCCcCccCC
Confidence 4667777755 334668899999974
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.88 E-value=29 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.3
Q ss_pred ccccccccchhHHHHhHHHhhhhh
Q psy9841 57 AEKLSISQSSALAATGLIWSRYSL 80 (125)
Q Consensus 57 pe~IS~~mt~aL~~tg~iw~Rys~ 80 (125)
+|.|-..-|.+||+-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999999987764
No 9
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=8.63 E-value=62 Score=21.38 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=19.7
Q ss_pred HHHHhhhhhcCc--ccchhhhhCCCCCCccccc
Q psy9841 7 RAAISAVDRFVP--SKARPLWEHPAGPKTVFFW 37 (125)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~p~Gp~T~hFW 37 (125)
++++.++.+..+ -.+-+++..|+||-.+..|
T Consensus 27 ~~Lr~~i~~~f~~~~~~gr~~~kpVGPHp~~~~ 59 (115)
T d2p8ia1 27 WTLREQIEAHWSGKLQLGRFHERPVGPHPMWSY 59 (115)
T ss_dssp HHHHHHHHHHTTTCSEECCCBSSCCTTCSSEEE
T ss_pred HHHHHHHHHhcccceEEeecccCccCCCCCeEE
Confidence 345555555455 3346899999999755544
No 10
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.33 E-value=69 Score=19.76 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=14.9
Q ss_pred cchhhhhCCCCCCcccccccccccch
Q psy9841 20 KARPLWEHPAGPKTVFFWAPMFKWGL 45 (125)
Q Consensus 20 ~~~~~~~~p~Gp~T~hFWgPv~kWgi 45 (125)
.+++.+.|+.= +.--+++|++|||.
T Consensus 108 ~Ik~yl~s~~~-~~~P~~~~~~~~~~ 132 (133)
T d1gsua1 108 KISAYMRSGRF-MKAPIFWYTALWNN 132 (133)
T ss_dssp HHHHHHTSSSC-CCCCCSCTTCSSSC
T ss_pred HHHHHHcCCCc-CCCCCCCcccccCC
Confidence 34556666442 22335679999984
Done!