RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9841
         (125 letters)



>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
           phosphotransferase; HET: SEP; 2.40A {Oryctolagus
           cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
           PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
          Length = 561

 Score = 30.1 bits (68), Expect = 0.16
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 11  SAVDRFVPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAG 49
            A+DR   +    L+E P G K  FF   M    L + G
Sbjct: 338 GALDRVANATKIALYETPTGWK--FFGNLMDASKLSLCG 374


>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
           isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
           c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
          Length = 572

 Score = 29.8 bits (67), Expect = 0.21
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 11  SAVDRFVPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAG 49
            A+D+        L+E P G K  FF   M    + + G
Sbjct: 355 GALDKVAAKNGIKLFETPTGWK--FFGNLMDAGLINLCG 391


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.43
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 28/89 (31%)

Query: 45  LVIAGIGDLTRP------------AEKLSISQSSALAA--TGLIWSRY-SLVIIPKN--- 86
             ++ I +  R              +KL+    S+L           +  L + P +   
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 87  --------W--SLFSVNMFVALPCVKLEL 105
                   W   + S  M V     K  L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL 416


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.53
 Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 28/66 (42%)

Query: 25   WEHPAGP--KTVF-----------FWAPMFKWGL-----VIAGIGDLTRPAEKLSISQSS 66
            +    G    T F            +  +   GL       AG           S+ + +
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG----------HSLGEYA 1768

Query: 67   ALAATG 72
            ALA+  
Sbjct: 1769 ALASLA 1774


>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
           PDB: 3f5m_A*
          Length = 487

 Score = 25.4 bits (56), Expect = 6.1
 Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 2/36 (5%)

Query: 18  PSKARPLWEHPAGP-KTVFFWAPMFKWGLVIAGIGD 52
           P    PL    A     + F       G+V  G G 
Sbjct: 74  PVSVSPLLCELAAARSRIHFNPTETTIGIVTCG-GI 108


>1uth_A LYSR-type regulatory protein; transcription regulation,
          transcriptional regulator; 2.2A {Burkholderia SP} SCOP:
          c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
          Length = 315

 Score = 24.9 bits (55), Expect = 8.1
 Identities = 6/20 (30%), Positives = 12/20 (60%), Gaps = 3/20 (15%)

Query: 53 LTRPAEKLSISQ---SSALA 69
          ++   EKL ++Q   S++L 
Sbjct: 31 VSTAGEKLGLTQPAVSNSLK 50


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,880,693
Number of extensions: 96827
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)