RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9841
         (125 letters)



>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 338

 Score = 24.7 bits (53), Expect = 4.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 88  SLFSVNMFVALPCVKLELEDLGECLSN 114
           S+ + + F+  PC   E     +C   
Sbjct: 275 SILNPDGFLGYPCSSYEKFQQNDCFPC 301


>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Dog (Canis familiaris) [TaxId: 9615]}
          Length = 337

 Score = 23.6 bits (50), Expect = 9.5
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 88  SLFSVNMFVALPCVKLELEDLGECLSN 114
           S+ + + F + PC      +  +C   
Sbjct: 274 SILNPDGFASYPCASYRAFESNKCFPC 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 452,040
Number of extensions: 17907
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)