BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9843
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 110/171 (64%), Gaps = 18/171 (10%)
Query: 9 GCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGF 68
G S N R E+ E + PDE+L K+++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+
Sbjct: 68 GTTASGGENER-EDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGY 126
Query: 69 VSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTI 127
VS+KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ +
Sbjct: 127 VSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKML 186
Query: 128 V-----------AINIPPESATI-----ELVAEMFKPCGEIALIRLLRPGK 162
+ A+ P ++ + E + ++F G I+ +R+L+PG+
Sbjct: 187 LVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGR 237
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 18/168 (10%)
Query: 12 TSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSL 71
TS N R E+ E + PDE+L ++++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+VS+
Sbjct: 71 TSGGENDR-EDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 129
Query: 72 KLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTIV-- 128
KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ ++
Sbjct: 130 KLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVY 189
Query: 129 ---------AINIPPESATI-----ELVAEMFKPCGEIALIRLLRPGK 162
A+ P ++ + E + ++F G I+ +R+L+PG+
Sbjct: 190 DLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGR 237
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 100/177 (56%), Gaps = 10/177 (5%)
Query: 1 MNKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKH 60
++ EK+ DT+ S ++ E + L + QVEF+F D N+ KD F+
Sbjct: 9 IDTEKMSSVGDTACADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSI 68
Query: 61 VKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQ 120
++++++G++ + ++++F R+K+L+ D +++A AL S +++N++GT+IRR +PL +
Sbjct: 69 IEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPK 128
Query: 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRH---FSF 174
SRT V + + P++ T + +F CG + I + R Y +TRH F+F
Sbjct: 129 DVDSRT-VYVELLPKTVTHIWLERVFSKCGHVVYISIPR------YKSTRHSKGFAF 178
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ T + +F CG + I +
Sbjct: 92 SVVELDLEGTRIRRKKPLGERPKDEEERTVY-VELLPKNVTHSWIERVFGKCGNVVYISI 150
Query: 158 LRPGKYTKYGNTRHFSF 174
Y G+ + F+F
Sbjct: 151 PH---YKSTGDPKGFAF 164
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT V + + P++ T + +F CG + I +
Sbjct: 93 SVVELDLEGTRIRRKKPLGERPKDEEERT-VYVELLPKNVTHSWIERVFGKCGNVVYISI 151
Query: 158 LRPGKYTKYGNTRHFSF 174
Y G+ + F+F
Sbjct: 152 PH---YKSTGDPKGFAF 165
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + +++ ++G++ + L++SF ++K ++ D +++A A+ S
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNS 99
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++IN GTKIRR PL Q SRT V + + P++ T + +F G + + +
Sbjct: 100 SVVEINLSGTKIRRRFPLGEKPQDVDSRT-VYVELLPKNVTHSWIERVFGKYGMVVYVSI 158
Query: 158 LRPGKYTKYGNTRHFSF 174
R Y G+ + F+F
Sbjct: 159 PR---YKSTGDPKGFAF 172
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT V + + P++ + +F CG + I +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERT-VYVELLPKNVNHSWIERVFGKCGNVVYISI 156
Query: 158 LRPGKYTKYGNTRHFSF 174
Y G+ + F+F
Sbjct: 157 PH---YKSTGDPKGFAF 170
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT V + + P++ + +F CG + I +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERT-VYVELLPKNVNHSWIERVFGKCGNVVYISI 156
Query: 158 LRPGKYTKYGNTRHFSF 174
Y G+ + F+F
Sbjct: 157 PH---YKSTGDPKGFAF 170
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRR--VDPLP----AYDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRR--VDPLP----AYDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P ++A ++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAA-LDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 10/131 (7%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L I Q+E+YF D N+ +D FL + + ++ EG+V + ++ +FKR+K LS+D +V+ A
Sbjct: 43 LEASTIRQLEYYFGDANLARDKFLQEQISKD-EGWVPVDVLLTFKRLKSLSEDKKVIVDA 101
Query: 94 LAKSEK--LQINEQGTKIRR--VDPLPAYDQTTP----SRTIVAINIPPESAT-IELVAE 144
+ KS++ ++++E K+RR PLP ++ T RT+ PE T + + E
Sbjct: 102 IEKSDEGLIEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEEGTQMSELLE 161
Query: 145 MFKPCGEIALI 155
F+P +I I
Sbjct: 162 FFEPFEKITNI 172
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
II QVE+YF D N+ +D FL + + +N++G+V L ++ +FKR+ LS D + AL KS
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 98 EK--LQINEQGTKIRR--VDPLPAYDQ----TTPSRTIVAINIPPESATIELV 142
E+ ++I+E +RR P+P +++ RT A P +S EL+
Sbjct: 114 EEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELL 166
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAF 92
D +I +Q+E+YF D N+ +D FL + + + +G+V L+ + F R+ L+ D+ +
Sbjct: 12 DSDTKICEQIEYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLSKLTTDFNTILQ 70
Query: 93 ALAKS--EKLQINEQGTKIRR--VDPLPAYD---QTTPSRTIVAINIPPESATIELVAEM 145
AL KS E L+INE+ KIRR PLP + + + V I P SA ++ V E
Sbjct: 71 ALKKSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYIKGFPTSAILDDVKEW 130
Query: 146 FKPCGEIALIRLLR 159
K G I I++ R
Sbjct: 131 LKDKGPIENIQMRR 144
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSEK--LQINEQGTKIRR--VDPLP----AYDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ ++++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSEK--LQINEQGTKIRR--VDPLP----AYDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ ++++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
++ QVEFYFSD N+ D FL ++N +G+V ++ I++FKR++ + + AL KS
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRF-QPLEAIVNALRKS 124
Query: 98 -EKLQINEQGTKIRRVDPLPAYD-QTTPSRTIVAINIPPESATIELVAEMF--KPCGEIA 153
E L+++E G K+RR+ PL D ++ R++ E ++ E F + G I+
Sbjct: 125 PELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPIS 184
Query: 154 LIRLLR 159
+R+ R
Sbjct: 185 AVRMRR 190
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 8 PGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEG 67
P + KP SR + + P+ + R + QVEFYFS+ N D FL ++N +G
Sbjct: 5 PQQEEQEKPQSRRNSFAVIEFTPE--VLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DG 61
Query: 68 FVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTP---- 123
+V + I++F R+K +V+ AL SE L+++ G ++R PL
Sbjct: 62 WVPISTIATFNRMKKYRPVDKVIE-ALRSSEILEVSADGENVKRRVPLDLTAARNARIEQ 120
Query: 124 -SRTIVAINIPPESATIELVAEM-------FKPCGEIALIRLLRPGKYTKYGNT 169
RT+ +N P E + E+ FK GEI +RL R + K+ T
Sbjct: 121 NQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNKKFNGT 174
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAF 92
DL +I +Q+E+YF D N+ +D FL + V + G+V L+ + F R+ L+ D+ ++
Sbjct: 11 DLDTKICEQIEYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRLSKLTTDFNIILQ 69
Query: 93 ALAKS--EKLQINEQGTKIRR--VDPLPA----YDQTTPSRTIVAINIPPESATIELVAE 144
AL KS E L+INE+ KIRR PLP Y + R+ V I P ++ + E
Sbjct: 70 ALKKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRS-VYIKGFPTITNLDEIKE 128
Query: 145 MFKPCGEIALIRLLR 159
G I I++ R
Sbjct: 129 WLNDKGPIENIQMRR 143
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + ++ F+ + +++ + +K L+ D ++
Sbjct: 117 EDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FIPIWTVANMEEIKKLTTDPDLIL 174
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 175 EVLRSSPMVQVDEKGEKVR-----PSHK-----RCIVILREIPETTPIEEVKGLFK 220
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + ++ FV + +++ + +K L+ + ++
Sbjct: 113 EDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FVPIWTVANMEEIKKLTTNTDLIL 170
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ +E V +FK
Sbjct: 171 EVLRSSPMVQVDEKGEKVR-----PSHK-----RCIVILREIPETTPVEEVKALFK 216
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QVE+YFS +N+ D FL + K + EG++ + LI+SF RV L+ D V+ A+ +S
Sbjct: 733 IKKQVEYYFSVDNLTGDFFLRR--KMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKES 790
Query: 98 EKLQINEQGTKIR 110
+KL++ E G K+R
Sbjct: 791 DKLELFE-GYKVR 802
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAF 92
D+ + Q+E+YFS EN+ KD FL KH+ + EG+V L ++SF R+K S D ++
Sbjct: 324 DVQAFLTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHA 381
Query: 93 ALAKSEKLQI 102
A S+ + +
Sbjct: 382 ACKASDIIDV 391
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 15/102 (14%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 374 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQALTTDISL 431
Query: 90 VAFALAKSEKLQINEQGTKIRRVD-----PLPA-----YDQT 121
+ AL S+ +++ E+ K+RR + PLP Y QT
Sbjct: 432 IFAALKDSKVVEMVEE--KVRRREEPEKWPLPGPPIVDYSQT 471
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 13/100 (13%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 399 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQALTTDISL 456
Query: 90 VAFALAKSEKLQINEQGTKIRRVD-----PLPA---YDQT 121
+ AL S+ ++I ++ K+RR + PLP Y QT
Sbjct: 457 IFAALKDSKVVEIVDE--KVRRREEPEKWPLPPIVDYSQT 494
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 13 SAKPNSRSENE---EIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFV 69
SA P S N E P + P + L + + Q+E+YFS EN+ D +LL + ++ +V
Sbjct: 245 SADPQQGSHNAAGGEEPNI-PLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ--YV 301
Query: 70 SLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIR 110
+ ++ F V+ L+ D ++ L +S +Q++++G ++R
Sbjct: 302 PIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR 342
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L + I Q+E+YFS EN+ +D FL K +++GF+ + LI+ F+RV+ L+ + ++ A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFL--RGKMDEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 94 LAKSEKLQI 102
L S +++I
Sbjct: 273 LKDSTEVEI 281
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLS 84
I +Q+EFYFS+EN+ D FL K+ +GF+ + LI F R+ +LS
Sbjct: 275 IKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLS 321
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLS 84
I Q+E+YFS+EN+ D +L K +K+GF L LIS F RV ++S
Sbjct: 265 IARQIEYYFSEENLTVDNYL--RSKLSKDGFAPLSLISKFYRVVNMS 309
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 29 KPD--EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86
+PD ED + + +EF S EN+ D +L+ + ++ +V + +++ +K LS D
Sbjct: 149 QPDSQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQ--YVPITTVANLDHIKKLSTD 206
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMF 146
++ L +Q++E+G K+R +R IV + ES +E V +F
Sbjct: 207 VDLIVEVLRSLPLVQVDEKGEKVR----------PNQNRCIVILREISESTPVEEVEALF 256
Query: 147 K 147
K
Sbjct: 257 K 257
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 17 NSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISS 76
N NE P + ED + + +EF S EN+ D +L+ + ++ +V + +++
Sbjct: 143 NDTGGNESQP--ESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQ--YVPITTVAN 198
Query: 77 FKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPES 136
+K LS D ++ L +Q++E+G K+R +R IV + ES
Sbjct: 199 LDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVR----------PNQNRCIVILREISES 248
Query: 137 ATIELVAEMFK 147
+E V +FK
Sbjct: 249 TPVEEVEALFK 259
>sp|Q8BHR2|ENOX1_MOUSE Ecto-NOX disulfide-thiol exchanger 1 OS=Mus musculus GN=Enox1 PE=1
SV=1
Length = 643
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 114 PLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156
P P+ + P V + PE+AT E++ E+F+ CG+I IR
Sbjct: 130 PPPSTRERPPGCKTVFVGGLPENATEEIIQEVFEQCGDITAIR 172
>sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1
SV=1
Length = 643
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 114 PLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156
P P+ + P V + PE+AT E++ E+F+ CG+I IR
Sbjct: 130 PPPSTRERPPGCKTVFVGGLPENATEEIIQEVFEQCGDITAIR 172
>sp|Q44315|TREY_ARTSQ Maltooligosyl trehalose synthase OS=Arthrobacter sp. (strain Q36)
GN=treY PE=1 SV=1
Length = 775
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 87 WRVVAFAL-AKSEKLQI------NEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATI 139
W+ +A A A E+LQ E G DP PA+++ + + P A +
Sbjct: 527 WQAIAGAWPASRERLQYYALKAAREAGNSTNWTDPAPAFEEKLKAAVDAVFDNPAVQAEV 586
Query: 140 ELVAEMFKPCG-----EIALIRLLRPGKYTKYGNT 169
E + E+ +P G L++L PG Y T
Sbjct: 587 EALVELLEPYGASNSLAAKLVQLTMPGVPDVYQGT 621
>sp|Q9L888|ALR_MYCAV Alanine racemase OS=Mycobacterium avium GN=alr PE=3 SV=2
Length = 388
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 117 AYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNT 169
A+D P + ++ PE + LV M C +AL++ +R G+ YG+T
Sbjct: 225 AFDMVRPGIAVYGLSPVPELGDMGLVPAMTVKC-TVALVKSIRAGESVSYGHT 276
>sp|A0QKR9|ALR_MYCA1 Alanine racemase OS=Mycobacterium avium (strain 104) GN=alr PE=3
SV=1
Length = 388
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 117 AYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNT 169
A+D P + ++ PE + LV M C +AL++ +R G+ YG+T
Sbjct: 225 AFDMVRPGIAVYGLSPVPELGDMGLVPAMTVKC-TVALVKSIRAGESVSYGHT 276
>sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
OS=Dictyostelium discoideum GN=hibA PE=3 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 67 GFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRT 126
GF+ L + + + + K ++ F ++K ++ E+G KI PA
Sbjct: 26 GFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANS---PA---EVAKEA 79
Query: 127 IVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161
V + + P SA ++ V CGE + + +RPG
Sbjct: 80 DVIVTMLPASAHVKNVY-----CGENGIFQTVRPG 109
>sp|Q4R5F5|IFIT1_MACFA Interferon-induced protein with tetratricopeptide repeats 1
OS=Macaca fascicularis GN=IFIT1 PE=2 SV=1
Length = 478
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 27 FVKPDE--DLTKRIIDQVEFYFSDENIVKDAFL--LKHVK-RNKEGFVSLKLISSFKRVK 81
F++ DE DL R++DQ+EF + N+ L +KH+K +N+E SLK + +
Sbjct: 26 FIEDDEMPDLENRVLDQIEFLDTKYNVGIHNLLAYVKHLKGQNEEALKSLKEAEDLMQKE 85
Query: 82 HLSK 85
H ++
Sbjct: 86 HANQ 89
>sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1
SV=2
Length = 610
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156
P V + PE+ T +++ E+F+ CGEI IR
Sbjct: 125 PGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 158
>sp|Q8R0Z2|ENOX2_MOUSE Ecto-NOX disulfide-thiol exchanger 2 OS=Mus musculus GN=Enox2 PE=2
SV=1
Length = 598
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156
P V + PE+ T +++ E+F+ CGEI IR
Sbjct: 96 PGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 129
>sp|Q8R4R6|NUP53_MOUSE Nucleoporin NUP53 OS=Mus musculus GN=Nup35 PE=1 SV=2
Length = 325
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 57 LLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQI--NEQGTKIRRVDP 114
+LKHV N ++ ++ S + K LSKD R+ ++ K I N R V
Sbjct: 198 ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNVMENSDRGVLS 257
Query: 115 LPAYDQTTPSRTIVAINIPPESATIELVAEM 145
P+ TTP RT + P +S + V+ M
Sbjct: 258 SPSLAFTTPIRT---LGTPTQSGSTPRVSTM 285
>sp|Q8TX56|SYFB_METKA Phenylalanine--tRNA ligase beta subunit OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=pheT PE=3 SV=1
Length = 590
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 7 PPGCDTSAKPNSRSENEEIPFVKPDEDLT-KRIIDQVEFYFSDENIVKDAFLLKHVKRNK 65
PP A PN RS E P P E++T ++ + E ++V D + ++
Sbjct: 151 PPLRYFLADPNDRSWAFE-PLDHPGEEMTPAEVLRRHEKGRQYAHLVSDG---APILADE 206
Query: 66 EGFVSLKLISSFKRVKHLS-----------KDWRVVAFALAKSEKLQINEQGTKIRRVDP 114
EG +S + + +R + DWR V AL + E+G +I V+
Sbjct: 207 EGVISFPPVINSERTRVTQDTTDLLIDVTGTDWRSVLDAL-HVIVCNLAERGAEILTVEI 265
Query: 115 LPAYDQTTPSRTIVAINIPPESA 137
L AY++TTP+ + ++P A
Sbjct: 266 LGAYERTTPTMELDVWDVPVSEA 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,442,074
Number of Sequences: 539616
Number of extensions: 2497736
Number of successful extensions: 6293
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6235
Number of HSP's gapped (non-prelim): 51
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)