Query psy9843
Match_columns 175
No_of_seqs 138 out of 658
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 21:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855|consensus 100.0 1.8E-37 3.9E-42 275.5 11.9 143 28-173 134-277 (484)
2 cd08032 LARP_7 La RNA-binding 100.0 4.2E-34 9.2E-39 205.4 7.2 80 32-111 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 100.0 1.5E-33 3.2E-38 200.5 6.2 76 36-111 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 100.0 6.1E-33 1.3E-37 196.0 6.0 74 36-111 2-75 (75)
5 smart00715 LA Domain in the RN 100.0 9E-33 2E-37 197.8 6.6 80 32-112 1-80 (80)
6 cd08029 LA_like_fungal La-moti 100.0 9.6E-33 2.1E-37 195.9 5.9 75 36-111 2-76 (76)
7 cd08036 LARP_5 La RNA-binding 100.0 7.4E-33 1.6E-37 195.0 5.1 74 36-111 2-75 (75)
8 cd08028 LARP_3 La RNA-binding 100.0 3.1E-32 6.7E-37 195.8 6.5 79 32-111 2-82 (82)
9 cd08031 LARP_4_5_like La RNA-b 100.0 6.1E-32 1.3E-36 191.3 6.3 74 36-111 2-75 (75)
10 cd08030 LA_like_plant La-motif 100.0 6.7E-32 1.4E-36 196.9 5.5 77 35-111 2-90 (90)
11 cd08037 LARP_1 La RNA-binding 100.0 6.5E-31 1.4E-35 185.0 6.1 72 36-111 2-73 (73)
12 cd08038 LARP_2 La RNA-binding 100.0 1.1E-30 2.3E-35 183.9 6.4 72 36-111 2-73 (73)
13 cd08034 LARP_1_2 La RNA-bindin 100.0 1.7E-30 3.7E-35 183.1 6.1 72 36-111 2-73 (73)
14 cd07323 LAM LA motif RNA-bindi 100.0 2.4E-30 5.2E-35 183.1 6.2 74 36-111 2-75 (75)
15 PF05383 La: La domain; Inter 99.9 4.2E-27 9.1E-32 160.5 4.2 60 38-97 1-61 (61)
16 KOG4213|consensus 99.9 3.8E-24 8.3E-29 172.8 3.7 128 31-163 10-145 (205)
17 KOG2591|consensus 99.9 1.6E-21 3.5E-26 178.2 9.8 119 24-155 86-207 (684)
18 COG5193 LHP1 La protein, small 99.6 5.7E-16 1.2E-20 137.7 1.4 124 38-161 75-220 (438)
19 KOG2590|consensus 98.9 2.3E-10 5.1E-15 104.1 1.9 79 33-118 299-386 (448)
20 COG5193 LHP1 La protein, small 98.9 4.7E-10 1E-14 100.3 2.3 61 35-97 271-331 (438)
21 PF14259 RRM_6: RNA recognitio 97.6 7.8E-05 1.7E-09 49.9 3.4 43 127-174 1-43 (70)
22 PF00076 RRM_1: RNA recognitio 97.6 5.5E-05 1.2E-09 49.7 2.4 33 127-160 1-33 (70)
23 smart00362 RRM_2 RNA recogniti 97.5 0.00016 3.4E-09 46.4 4.0 35 126-161 1-35 (72)
24 TIGR01622 SF-CC1 splicing fact 97.3 0.00038 8.3E-09 62.3 5.8 49 121-174 86-135 (457)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.3 0.00028 6.2E-09 60.8 4.5 45 125-174 270-315 (352)
26 PLN03134 glycine-rich RNA-bind 97.3 0.00049 1.1E-08 53.8 5.0 48 123-174 33-80 (144)
27 TIGR01659 sex-lethal sex-letha 97.2 0.001 2.2E-08 59.1 6.7 82 85-174 157-239 (346)
28 cd00590 RRM RRM (RNA recogniti 96.9 0.0014 3.1E-08 42.1 4.0 39 126-165 1-39 (74)
29 TIGR01645 half-pint poly-U bin 96.9 0.0051 1.1E-07 58.6 8.6 85 86-174 158-250 (612)
30 TIGR01628 PABP-1234 polyadenyl 96.8 0.0043 9.2E-08 57.5 7.9 47 123-174 177-223 (562)
31 TIGR01659 sex-lethal sex-letha 96.7 0.0026 5.7E-08 56.5 5.4 48 122-174 105-153 (346)
32 TIGR01628 PABP-1234 polyadenyl 96.6 0.0069 1.5E-07 56.1 7.5 46 124-174 285-330 (562)
33 TIGR01661 ELAV_HUD_SF ELAV/HuD 96.6 0.0095 2.1E-07 51.3 7.7 82 86-174 54-135 (352)
34 TIGR01648 hnRNP-R-Q heterogene 96.5 0.0066 1.4E-07 57.5 6.9 56 114-174 46-103 (578)
35 COG0724 RNA-binding proteins ( 96.5 0.0042 9E-08 48.9 4.5 46 124-174 115-161 (306)
36 smart00360 RRM RNA recognition 96.4 0.0036 7.7E-08 39.7 2.8 32 130-162 2-33 (71)
37 TIGR01642 U2AF_lg U2 snRNP aux 96.3 0.018 3.9E-07 52.3 8.3 46 124-174 295-341 (509)
38 TIGR01622 SF-CC1 splicing fact 96.3 0.0048 1E-07 55.3 4.4 47 124-174 186-232 (457)
39 PF09421 FRQ: Frequency clock 96.1 0.0069 1.5E-07 60.1 4.6 51 62-112 472-523 (989)
40 TIGR01645 half-pint poly-U bin 95.8 0.012 2.6E-07 56.2 4.6 46 124-174 107-153 (612)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 95.8 0.013 2.8E-07 53.8 4.6 38 123-160 274-311 (481)
42 KOG0113|consensus 95.5 0.016 3.4E-07 51.0 3.8 47 123-174 100-147 (335)
43 KOG0126|consensus 95.3 0.0045 9.7E-08 51.2 -0.1 48 123-174 34-81 (219)
44 KOG0122|consensus 95.2 0.026 5.7E-07 48.4 4.1 47 123-174 188-235 (270)
45 KOG0114|consensus 94.9 0.038 8.3E-07 42.1 3.9 35 124-159 18-52 (124)
46 KOG0130|consensus 94.5 0.051 1.1E-06 43.2 4.0 49 122-174 70-118 (170)
47 KOG0144|consensus 94.5 0.014 3E-07 53.6 0.7 111 36-174 49-169 (510)
48 PF01885 PTS_2-RNA: RNA 2'-pho 94.0 0.093 2E-06 42.9 4.7 51 63-113 27-82 (186)
49 PF14605 Nup35_RRM_2: Nup53/35 93.8 0.069 1.5E-06 35.0 2.8 32 125-158 2-33 (53)
50 KOG0145|consensus 93.7 0.1 2.2E-06 45.6 4.4 71 86-160 92-162 (360)
51 KOG0117|consensus 93.5 0.11 2.3E-06 48.1 4.5 35 125-160 260-294 (506)
52 KOG0148|consensus 93.2 0.12 2.7E-06 45.1 4.3 38 122-160 162-199 (321)
53 KOG0110|consensus 93.1 0.051 1.1E-06 52.4 1.9 44 126-174 615-659 (725)
54 KOG2278|consensus 93.0 0.17 3.8E-06 41.6 4.6 51 63-113 29-83 (207)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 93.0 0.14 3E-06 47.0 4.6 35 124-159 394-430 (481)
56 KOG0108|consensus 92.3 0.16 3.6E-06 46.7 4.1 46 125-174 19-64 (435)
57 KOG4207|consensus 92.2 0.14 3.1E-06 43.3 3.2 45 125-174 14-59 (256)
58 TIGR01648 hnRNP-R-Q heterogene 92.0 0.77 1.7E-05 43.8 8.2 35 124-159 233-269 (578)
59 KOG0127|consensus 91.9 0.28 6E-06 46.5 5.0 38 123-161 291-328 (678)
60 PLN03213 repressor of silencin 91.8 0.24 5.1E-06 46.7 4.4 37 123-160 9-45 (759)
61 KOG4206|consensus 91.7 0.2 4.3E-06 42.3 3.5 36 125-161 10-49 (221)
62 KOG0116|consensus 91.2 0.22 4.8E-06 45.7 3.6 35 124-159 288-322 (419)
63 TIGR01642 U2AF_lg U2 snRNP aux 90.1 0.39 8.5E-06 43.6 4.2 28 121-149 172-199 (509)
64 PRK00819 RNA 2'-phosphotransfe 89.7 0.7 1.5E-05 37.7 4.9 49 63-113 28-78 (179)
65 KOG0117|consensus 89.5 1.3 2.8E-05 41.1 7.0 58 113-174 70-129 (506)
66 smart00361 RRM_1 RNA recogniti 89.4 0.31 6.8E-06 32.9 2.3 35 139-174 2-41 (70)
67 KOG0145|consensus 88.9 0.58 1.3E-05 41.0 4.1 37 124-161 40-77 (360)
68 KOG1548|consensus 87.9 0.55 1.2E-05 42.2 3.5 27 125-152 135-161 (382)
69 KOG0132|consensus 86.6 0.75 1.6E-05 45.2 3.8 51 108-159 402-455 (894)
70 PF13893 RRM_5: RNA recognitio 86.2 0.71 1.5E-05 29.4 2.4 20 142-161 1-20 (56)
71 KOG4660|consensus 85.2 0.75 1.6E-05 43.4 2.9 42 121-163 72-113 (549)
72 KOG0144|consensus 84.8 1.1 2.3E-05 41.6 3.7 41 122-163 32-72 (510)
73 KOG0127|consensus 84.5 1 2.2E-05 42.8 3.5 46 124-174 117-162 (678)
74 PF08777 RRM_3: RNA binding mo 84.3 1.4 3E-05 32.7 3.5 34 126-160 3-36 (105)
75 KOG0123|consensus 83.5 1.4 3E-05 39.7 3.9 46 124-174 167-212 (369)
76 KOG0148|consensus 83.1 1.2 2.7E-05 39.0 3.2 44 126-174 64-108 (321)
77 KOG0123|consensus 82.4 1.2 2.6E-05 40.1 3.0 48 122-174 268-315 (369)
78 KOG0125|consensus 82.1 1.6 3.4E-05 39.2 3.5 38 124-162 96-133 (376)
79 PTZ00315 2'-phosphotransferase 81.7 2.9 6.2E-05 40.1 5.3 51 63-113 400-456 (582)
80 KOG0124|consensus 80.9 2.2 4.8E-05 39.0 4.1 35 125-160 211-245 (544)
81 KOG4205|consensus 80.6 3.5 7.5E-05 36.5 5.2 46 124-174 97-143 (311)
82 KOG4208|consensus 79.1 2.2 4.8E-05 35.8 3.3 45 126-174 51-96 (214)
83 KOG0153|consensus 78.3 3.2 6.9E-05 37.5 4.2 38 121-159 225-262 (377)
84 KOG0121|consensus 76.6 2.7 5.8E-05 33.3 2.9 42 123-165 35-77 (153)
85 KOG0131|consensus 75.8 1.9 4.2E-05 35.7 2.0 37 124-161 9-45 (203)
86 KOG4209|consensus 75.5 2.2 4.7E-05 36.1 2.3 51 120-174 97-147 (231)
87 KOG0149|consensus 75.5 3.7 8.1E-05 35.2 3.7 45 125-174 13-58 (247)
88 PF08675 RNA_bind: RNA binding 70.0 5 0.00011 29.3 2.8 27 126-153 10-36 (87)
89 KOG0111|consensus 69.1 2.7 5.9E-05 36.0 1.5 39 122-161 8-46 (298)
90 PF05172 Nup35_RRM: Nup53/35/4 68.1 4.2 9E-05 30.2 2.1 32 123-156 5-36 (100)
91 KOG0147|consensus 68.1 3.9 8.5E-05 38.7 2.4 45 125-174 279-324 (549)
92 KOG0107|consensus 67.4 11 0.00024 31.2 4.6 35 124-159 10-44 (195)
93 KOG0533|consensus 66.9 5.9 0.00013 33.9 3.1 34 125-159 84-117 (243)
94 KOG0415|consensus 66.1 7.4 0.00016 35.6 3.6 45 115-160 230-274 (479)
95 KOG2590|consensus 62.8 2 4.4E-05 39.8 -0.5 72 30-103 93-169 (448)
96 KOG0146|consensus 62.3 8.8 0.00019 33.9 3.3 47 123-174 18-64 (371)
97 KOG4454|consensus 59.2 3.5 7.5E-05 35.3 0.3 39 123-162 8-46 (267)
98 KOG4307|consensus 58.1 14 0.00031 36.5 4.2 44 125-169 868-912 (944)
99 KOG0124|consensus 56.2 7.7 0.00017 35.6 2.0 46 125-174 114-159 (544)
100 KOG1190|consensus 52.6 17 0.00037 33.8 3.6 38 123-161 27-64 (492)
101 KOG4212|consensus 51.0 13 0.00029 34.8 2.7 40 122-162 534-573 (608)
102 KOG0110|consensus 46.2 20 0.00044 35.1 3.2 40 122-162 383-422 (725)
103 PF15513 DUF4651: Domain of un 45.4 16 0.00036 25.0 1.8 18 139-156 8-25 (62)
104 KOG4661|consensus 45.2 19 0.00042 34.9 2.8 35 124-159 405-439 (940)
105 KOG4212|consensus 44.4 30 0.00065 32.6 3.9 40 123-163 43-83 (608)
106 KOG1190|consensus 44.3 29 0.00062 32.3 3.7 38 125-162 298-335 (492)
107 KOG2891|consensus 43.8 16 0.00035 32.5 2.0 52 124-175 149-218 (445)
108 COG5175 MOT2 Transcriptional r 40.3 24 0.00051 32.2 2.5 37 124-160 114-155 (480)
109 KOG0151|consensus 40.3 42 0.00092 33.3 4.3 57 104-161 143-210 (877)
110 KOG3152|consensus 36.3 40 0.00088 29.4 3.2 34 126-160 76-109 (278)
111 KOG4210|consensus 35.7 30 0.00064 30.1 2.4 36 123-159 183-219 (285)
112 KOG1995|consensus 34.3 27 0.00059 31.5 1.9 29 124-153 66-94 (351)
113 PF10309 DUF2414: Protein of u 34.3 45 0.00099 22.7 2.6 22 126-149 7-28 (62)
114 COG1859 KptA RNA:NAD 2'-phosph 32.3 67 0.0015 27.1 3.9 50 62-113 53-104 (211)
115 KOG0129|consensus 31.2 55 0.0012 31.1 3.5 42 123-165 369-412 (520)
116 KOG0146|consensus 29.5 60 0.0013 28.8 3.2 36 122-158 283-318 (371)
117 KOG0147|consensus 27.9 13 0.00029 35.3 -1.1 39 121-160 176-214 (549)
118 PF07292 NID: Nmi/IFP 35 domai 27.7 1.6E+02 0.0034 21.4 4.7 59 88-147 8-74 (88)
119 KOG1457|consensus 27.2 99 0.0021 26.8 4.0 37 124-161 34-72 (284)
120 KOG4211|consensus 26.9 85 0.0018 29.7 3.9 39 124-164 10-49 (510)
121 smart00027 EH Eps15 homology d 25.4 57 0.0012 22.9 2.0 50 44-95 2-51 (96)
122 PHA02672 ORF110 EEV glycoprote 24.6 25 0.00054 28.3 0.0 31 53-86 42-72 (166)
123 PF04059 RRM_2: RNA recognitio 23.3 1.4E+02 0.003 21.9 3.8 33 125-158 2-36 (97)
124 PF04963 Sigma54_CBD: Sigma-54 22.3 82 0.0018 25.5 2.6 46 28-75 11-59 (194)
125 KOG4285|consensus 21.6 99 0.0022 27.8 3.1 36 125-162 198-233 (350)
126 KOG4676|consensus 21.1 25 0.00053 32.6 -0.7 40 125-165 152-191 (479)
No 1
>KOG1855|consensus
Probab=100.00 E-value=1.8e-37 Score=275.46 Aligned_cols=143 Identities=52% Similarity=0.912 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCc
Q psy9843 28 VKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGT 107 (175)
Q Consensus 28 ~~~~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~ 107 (175)
.++.|++..+|.+||||||||.||.+|.||++.|+++.+|||||++|++|+|||+||.|+.+|+.||+.|..|+|||||+
T Consensus 134 ~~lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgk 213 (484)
T KOG1855|consen 134 LILSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGK 213 (484)
T ss_pred ccccHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCC-CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCC
Q psy9843 108 KIRRVDPLPAYDQ-TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFS 173 (175)
Q Consensus 108 ~VRR~~plp~~~~-~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~ 173 (175)
+|||..|||+.+. +...|||+++++|.+ ...|.|..+|+.+|.|.+||+|+|| .+| .|.|+|.
T Consensus 214 KVrRisPlp~~~~eel~srtivaenLP~D-h~~enl~kiFg~~G~IksIRIckPg-aip-~d~r~~~ 277 (484)
T KOG1855|consen 214 KVRRISPLPEFDEEELPSRTIVAENLPLD-HSYENLSKIFGTVGSIKSIRICKPG-AIP-EDVRGFP 277 (484)
T ss_pred eeeecCCCCCccccccccceEEEecCCcc-hHHHHHHHHhhcccceeeeeecCCC-CCC-cccccCC
Confidence 9999999999875 478899999999986 6789999999999999999999999 999 8888763
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=100.00 E-value=4.2e-34 Score=205.39 Aligned_cols=80 Identities=36% Similarity=0.713 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 32 e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
.+++++|++||||||||+||++|.||+++|.++++|||||++|++|||||+|+.|.+.|++||+.|+.|||++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57889999999999999999999999999988899999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=100.00 E-value=1.5e-33 Score=200.49 Aligned_cols=76 Identities=66% Similarity=1.112 Sum_probs=74.6
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++|.++++|||||++|++|||||+|+.|.+.|++||+.|+.|||++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.98 E-value=6.1e-33 Score=196.04 Aligned_cols=74 Identities=30% Similarity=0.555 Sum_probs=71.7
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|||||+||.|++.|++||+.|+.|||+|||++||.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 68999999999999999999999999 689999999999999999999999999999999999999999999984
No 5
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.97 E-value=9e-33 Score=197.75 Aligned_cols=80 Identities=48% Similarity=0.798 Sum_probs=76.9
Q ss_pred HHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 32 e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
+++.++|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+++.|.+.|++||+.|+.|||++||++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 467899999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred C
Q psy9843 112 V 112 (175)
Q Consensus 112 ~ 112 (175)
+
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 5
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=9.6e-33 Score=195.89 Aligned_cols=75 Identities=41% Similarity=0.661 Sum_probs=72.6
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++|.++++|||||++|++|||||+|+.+ +.|++||+.|+.|||++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 689999999999999999999999999899999999999999999999865 999999999999999999999998
No 7
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=7.4e-33 Score=194.98 Aligned_cols=74 Identities=24% Similarity=0.507 Sum_probs=71.6
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
+.|++||||||||+||++|.||+++| +++|||||++|++|||||+||.|.+.|++||+.|+.||||++|++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 67999999999999999999999999 679999999999999999999999999999999999999999999984
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.97 E-value=3.1e-32 Score=195.80 Aligned_cols=79 Identities=44% Similarity=0.764 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCC--ceEEeecCcEE
Q psy9843 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSE--KLQINEQGTKI 109 (175)
Q Consensus 32 e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~--~lev~edg~~V 109 (175)
+++..+|++||||||||+||++|.||+++|.++ +|||||++|++|||||+++.|.+.|++||+.|+ .|||++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 568899999999999999999999999999754 999999999999999999999999999999999 99999999999
Q ss_pred Ee
Q psy9843 110 RR 111 (175)
Q Consensus 110 RR 111 (175)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.1e-32 Score=191.30 Aligned_cols=74 Identities=34% Similarity=0.667 Sum_probs=71.6
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|+|||+|+.|.+.|++||+.|+.|||++||++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999999 579999999999999999999999999999999999999999999984
No 10
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.7e-32 Score=196.95 Aligned_cols=77 Identities=43% Similarity=0.721 Sum_probs=73.6
Q ss_pred HHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCC------------HHHHHHHHhcCCceEE
Q psy9843 35 TKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD------------WRVVAFALAKSEKLQI 102 (175)
Q Consensus 35 ~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d------------~~~i~~Al~~S~~lev 102 (175)
.++|++||||||||+||++|+||+++|.++++|||||++|++|||||+|+.+ .+.|++||+.|+.|||
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eecCcEEEe
Q psy9843 103 NEQGTKIRR 111 (175)
Q Consensus 103 ~edg~~VRR 111 (175)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 11
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=6.5e-31 Score=184.99 Aligned_cols=72 Identities=39% Similarity=0.680 Sum_probs=68.8
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|||||+|+.|.+.|++||+.|+.||++++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999999 689999999999999999999999999999999999999977 7775
No 12
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.1e-30 Score=183.91 Aligned_cols=72 Identities=39% Similarity=0.672 Sum_probs=68.6
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|||||+|+.|.+.|++||+.|+.||+++| +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999999 689999999999999999999999999999999999999977 6765
No 13
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=1.7e-30 Score=183.06 Aligned_cols=72 Identities=36% Similarity=0.632 Sum_probs=69.0
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|+|||+++.|.+.|++||+.|+.|||++ ++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999999 68999999999999999999999999999999999999998 58885
No 14
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=2.4e-30 Score=183.11 Aligned_cols=74 Identities=46% Similarity=0.783 Sum_probs=72.2
Q ss_pred HHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcEEEe
Q psy9843 36 KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR 111 (175)
Q Consensus 36 ~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~VRR 111 (175)
++|++||||||||+||++|.||+++| +++|||||++|++|+||++++.|.+.|++||+.|..||++++|++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 67999999999999999999999999 789999999999999999999999999999999999999999999997
No 15
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.93 E-value=4.2e-27 Score=160.52 Aligned_cols=60 Identities=45% Similarity=0.712 Sum_probs=55.3
Q ss_pred HHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhc-CCHHHHHHHHhcC
Q psy9843 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLS-KDWRVVAFALAKS 97 (175)
Q Consensus 38 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt-~d~~~i~~Al~~S 97 (175)
|++||||||||+||++|+||+++|..++||||||++|++|+|||+++ .|.+.|++||+.|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999998889999999999999999999 8999999999987
No 16
>KOG4213|consensus
Probab=99.89 E-value=3.8e-24 Score=172.83 Aligned_cols=128 Identities=30% Similarity=0.535 Sum_probs=112.9
Q ss_pred CHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCC--ceEEeecCcE
Q psy9843 31 DEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSE--KLQINEQGTK 108 (175)
Q Consensus 31 ~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~--~lev~edg~~ 108 (175)
..++.++|+.||||||+|.||++|+||++++.+..+|||||.+++.|+|+..+++|.+.|++||+.|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 45667889999999999999999999999997788999999999999999999999999999999875 7999999999
Q ss_pred EEeC--CCCCCCC----CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCC
Q psy9843 109 IRRV--DPLPAYD----QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163 (175)
Q Consensus 109 VRR~--~plp~~~----~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~ 163 (175)
+||. .|||+.. .....|++|.+ |. ...++++..|-+ |++.+|.|+|.+.+
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~t-d~ql~~l~qw~~--~k~~nv~mr~~~~k 145 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--IT-DDQLDDLNQWAS--GKGHNVKMRRHGNK 145 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CC-HHHHHHHHHHhc--ccceEeeccccCCC
Confidence 9997 5888753 23457999999 43 368999999988 99999999997665
No 17
>KOG2591|consensus
Probab=99.85 E-value=1.6e-21 Score=178.24 Aligned_cols=119 Identities=30% Similarity=0.577 Sum_probs=102.5
Q ss_pred CCCCCCCCHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEe
Q psy9843 24 EIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQIN 103 (175)
Q Consensus 24 ~~~~~~~~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~ 103 (175)
+.+..+.+.++++.+++|||||||.+||..|.||..+| ++|.||||.+|+.|+.|++|++|+++|+++|+.|+.|+|+
T Consensus 86 ~~~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQM--DSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvD 163 (684)
T KOG2591|consen 86 EPPSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQM--DSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVD 163 (684)
T ss_pred CCCCCccchhHHHHHHHHHHHhhccccccchhhhhhhc--ccccccchhhhccchhhhhhccchHHHHHHHhcCCCceec
Confidence 34444556699999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred ecCcEEEeCCCCCCCCCCCCCceEE-EecCCCCCCCHHHHHHHhcc--CCcccEE
Q psy9843 104 EQGTKIRRVDPLPAYDQTTPSRTIV-AINIPPESATIELVAEMFKP--CGEIALI 155 (175)
Q Consensus 104 edg~~VRR~~plp~~~~~~~~rtv~-v~~~p~~~~t~e~i~~~F~~--~G~V~~V 155 (175)
|.|.+||. ...|+|+ ++.+| ++..+|+|+.+|+. |-++...
T Consensus 164 ekgekVrp----------~~kRcIvilREIp-ettp~e~Vk~lf~~encPk~isc 207 (684)
T KOG2591|consen 164 EKGEKVRP----------NHKRCIVILREIP-ETTPIEVVKALFKGENCPKVISC 207 (684)
T ss_pred cCcccccc----------CcceeEEEEeecC-CCChHHHHHHHhccCCCCCceee
Confidence 99999996 3346655 56666 45889999999997 4444443
No 18
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=5.7e-16 Score=137.74 Aligned_cols=124 Identities=30% Similarity=0.419 Sum_probs=108.9
Q ss_pred HHhhhhhhcc-----CCCCCcchHHHHhhccC--CCCceeHHHHhcchhhhhhcCCHHHHHHHHhcC---CceEEeecCc
Q psy9843 38 IIDQVEFYFS-----DENIVKDAFLLKHVKRN--KEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS---EKLQINEQGT 107 (175)
Q Consensus 38 I~~QvEfYFS-----d~NL~~D~fL~~~~~~~--~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S---~~lev~edg~ 107 (175)
+..|+||||| |.|+++|+||+....++ .+|||||.++++|+||+..+...+.+..|++.| ..++++.+|.
T Consensus 75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgs 154 (438)
T COG5193 75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGS 154 (438)
T ss_pred cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccc
Confidence 8899999999 99999999999877543 389999999999999999999999999999999 7899999999
Q ss_pred EEEeCCCCCCCCC---CCCCceEEEecCCCCCC-------CHHHHHHHhcc--CCcccEEEeeCCC
Q psy9843 108 KIRRVDPLPAYDQ---TTPSRTIVAINIPPESA-------TIELVAEMFKP--CGEIALIRLLRPG 161 (175)
Q Consensus 108 ~VRR~~plp~~~~---~~~~rtv~v~~~p~~~~-------t~e~i~~~F~~--~G~V~~Vrl~r~~ 161 (175)
.+||+.++..... ....|.+|+.+|+.++. +.++++.+|.+ +|++.+||++|..
T Consensus 155 n~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~ 220 (438)
T COG5193 155 NKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDW 220 (438)
T ss_pred cccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhh
Confidence 9999887765432 34579999999998753 25799999999 7899999999975
No 19
>KOG2590|consensus
Probab=98.95 E-value=2.3e-10 Score=104.08 Aligned_cols=79 Identities=33% Similarity=0.526 Sum_probs=66.1
Q ss_pred HHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEee--------
Q psy9843 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINE-------- 104 (175)
Q Consensus 33 ~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~e-------- 104 (175)
...+.+.+|||||||.+||.+|.|+++ |||||.+|++|+||..++.|+++|.+||+.+..|++--
T Consensus 299 ~~~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d~~~r~~~ 371 (448)
T KOG2590|consen 299 NVIAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGDLERRGGD 371 (448)
T ss_pred ccccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccchhhhcccc
Confidence 336889999999999999999999865 66889999999999999999999999999999888642
Q ss_pred -cCcEEEeCCCCCCC
Q psy9843 105 -QGTKIRRVDPLPAY 118 (175)
Q Consensus 105 -dg~~VRR~~plp~~ 118 (175)
.|.+++|+.+.-..
T Consensus 372 ~~g~~~~ra~~~s~l 386 (448)
T KOG2590|consen 372 RWGNHVSRAKESSPL 386 (448)
T ss_pred cccceecccccCCcc
Confidence 34566666655443
No 20
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.7e-10 Score=100.30 Aligned_cols=61 Identities=34% Similarity=0.572 Sum_probs=56.5
Q ss_pred HHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcC
Q psy9843 35 TKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97 (175)
Q Consensus 35 ~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S 97 (175)
...+.+|||||||..||..|.|||++++ .+||||++.|..|.|...+..|..++..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~--kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFK--KAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhh--hcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 5678889999999999999999999995 569999999999999999999999999998875
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.57 E-value=7.8e-05 Score=49.86 Aligned_cols=43 Identities=28% Similarity=0.527 Sum_probs=34.3
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 127 IVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 127 v~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
|||.++|.. ++.++|.++|+.||.|..|++.+.....+ |++||
T Consensus 1 v~i~nlp~~-~~~~~l~~~f~~~g~v~~v~~~~~~~~~~----~~~a~ 43 (70)
T PF14259_consen 1 VYISNLPPS-TTEEDLRNFFSRFGPVEKVRLIKNKDGQS----RGFAF 43 (70)
T ss_dssp EEEESSTTT---HHHHHHHCTTSSBEEEEEEEESTTSSE----EEEEE
T ss_pred CEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEeeecccc----CCEEE
Confidence 789999985 89999999999999999999998655444 66654
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.55 E-value=5.5e-05 Score=49.75 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=30.7
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 127 IVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 127 v~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
|||.++|.+ +|.++|+++|++||.|..+.+.+.
T Consensus 1 l~v~nlp~~-~t~~~l~~~f~~~g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPD-VTEEELRDFFSQFGKIESIKVMRN 33 (70)
T ss_dssp EEEESETTT-SSHHHHHHHHHTTSTEEEEEEEEE
T ss_pred cEEcCCCCc-CCHHHHHHHHHHhhhccccccccc
Confidence 799999985 999999999999999999998876
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=97.50 E-value=0.00016 Score=46.40 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=31.7
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
||++.++|.. .+.++|+++|.+||.|..+++.+..
T Consensus 1 ~v~i~~l~~~-~~~~~l~~~~~~~g~v~~~~~~~~~ 35 (72)
T smart00362 1 TLFVGNLPPD-VTEEDLKELFSKFGPIESVKIPKDT 35 (72)
T ss_pred CEEEcCCCCc-CCHHHHHHHHHhcCCEEEEEEecCC
Confidence 5899999975 8999999999999999999988765
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.33 E-value=0.00038 Score=62.34 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=40.8
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
....+||||.++|.. ++.++|+++|+.||.|..|++.+... .. -|+|||
T Consensus 86 ~~~~~~l~V~nlp~~-~~~~~l~~~F~~~G~v~~v~i~~d~~~~~----skg~af 135 (457)
T TIGR01622 86 ERDDRTVFVLQLALK-ARERDLYEFFSKVGKVRDVQCIKDRNSRR----SKGVAY 135 (457)
T ss_pred ccCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCC----cceEEE
Confidence 456789999999975 89999999999999999999987532 33 378876
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.31 E-value=0.00028 Score=60.79 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=39.1
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
++|+|.++|.+ ++.++|.++|++||.|..|++.+.. ...+ |+|+|
T Consensus 270 ~~lfV~NL~~~-~~e~~L~~~F~~fG~v~~v~i~~d~~t~~s----kG~aF 315 (352)
T TIGR01661 270 YCIFVYNLSPD-TDETVLWQLFGPFGAVQNVKIIRDLTTNQC----KGYGF 315 (352)
T ss_pred cEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEeEcCCCCCc----cceEE
Confidence 47999999975 8999999999999999999988754 4555 89887
No 26
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.26 E-value=0.00049 Score=53.82 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|++.++... ..-|+|+|
T Consensus 33 ~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaF 80 (144)
T PLN03134 33 MSTKLFIGGLSWG-TDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGF 80 (144)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEE
Confidence 3568999999975 899999999999999999999875432 12377876
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.17 E-value=0.001 Score=59.08 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CC
Q psy9843 85 KDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KY 163 (175)
Q Consensus 85 ~d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~ 163 (175)
.+.+....|++.-.-.++. +..|+-...-+.. ......+|||.++|.. +|.++|+++|++||.|..+++.+.. ..
T Consensus 157 ~~~e~A~~Ai~~LnG~~l~--gr~i~V~~a~p~~-~~~~~~~lfV~nLp~~-vtee~L~~~F~~fG~V~~v~i~~d~~tg 232 (346)
T TIGR01659 157 GSEADSQRAIKNLNGITVR--NKRLKVSYARPGG-ESIKDTNLYVTNLPRT-ITDDQLDTIFGKYGQIVQKNILRDKLTG 232 (346)
T ss_pred ccHHHHHHHHHHcCCCccC--Cceeeeecccccc-cccccceeEEeCCCCc-ccHHHHHHHHHhcCCEEEEEEeecCCCC
Confidence 3677778888754444443 3333322111221 1234568999999975 8999999999999999999988754 33
Q ss_pred CCCCCCccCCC
Q psy9843 164 TKYGNTRHFSF 174 (175)
Q Consensus 164 ~p~~~~~~~~~ 174 (175)
.| |+|+|
T Consensus 233 ~~----kG~aF 239 (346)
T TIGR01659 233 TP----RGVAF 239 (346)
T ss_pred cc----ceEEE
Confidence 44 67765
No 28
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.92 E-value=0.0014 Score=42.08 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=33.3
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
+|++.++|.. .+.++|+++|..||.|..+.+.+.....|
T Consensus 1 ~i~i~~l~~~-~~~~~i~~~~~~~g~i~~~~~~~~~~~~~ 39 (74)
T cd00590 1 TLFVGNLPPD-VTEEDLRELFSKFGKVESVRIVRDKDTKS 39 (74)
T ss_pred CEEEeCCCCc-cCHHHHHHHHHhcCCEEEEEEeeCCCCCc
Confidence 4899999985 89999999999999999999997654433
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=96.86 E-value=0.0051 Score=58.64 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=56.8
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCC--------CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEe
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD--------QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~--------~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl 157 (175)
+.+....|++.-.-..+..-.-+|+|-...+... .....++|||.++|.+ ++.++|+++|+.||.|..+++
T Consensus 158 s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~-vteedLk~lFs~FG~I~svrl 236 (612)
T TIGR01645 158 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPD-LSETDIKSVFEAFGEIVKCQL 236 (612)
T ss_pred cHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCC-CCHHHHHHHHhhcCCeeEEEE
Confidence 5677788887655555552222344433222111 1123479999999975 899999999999999999999
Q ss_pred eCCCCCCCCCCCccCCC
Q psy9843 158 LRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 158 ~r~~~~~p~~~~~~~~~ 174 (175)
.+..... .-|+|+|
T Consensus 237 ~~D~~tg---ksKGfGF 250 (612)
T TIGR01645 237 ARAPTGR---GHKGYGF 250 (612)
T ss_pred EecCCCC---CcCCeEE
Confidence 8754322 2488876
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=96.84 E-value=0.0043 Score=57.47 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=39.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ +|.++|+++|+.||.|..+++.+.....+ |+|+|
T Consensus 177 ~~~~l~V~nl~~~-~tee~L~~~F~~fG~i~~~~i~~~~~g~~----~G~af 223 (562)
T TIGR01628 177 KFTNLYVKNLDPS-VNEDKLRELFAKFGEITSAAVMKDGSGRS----RGFAF 223 (562)
T ss_pred CCCeEEEeCCCCc-CCHHHHHHHHHhcCCEEEEEEEECCCCCc----ccEEE
Confidence 3468999999975 89999999999999999999988655444 77776
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.74 E-value=0.0026 Score=56.52 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|+.||.|..|+|.+.. .... |+|+|
T Consensus 105 ~~~~~LfVgnLp~~-~te~~L~~lF~~~G~V~~v~i~~d~~tg~s----rGyaF 153 (346)
T TIGR01659 105 NSGTNLIVNYLPQD-MTDRELYALFRTIGPINTCRIMRDYKTGYS----FGYAF 153 (346)
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCcc----CcEEE
Confidence 35689999999986 9999999999999999999988743 3333 77776
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=96.61 E-value=0.0069 Score=56.08 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=39.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..+|||.+++.+ ++.++|+++|++||.|..+++.++....+ |+|+|
T Consensus 285 ~~~l~V~nl~~~-~~~~~L~~~F~~~G~i~~~~i~~d~~g~~----~g~gf 330 (562)
T TIGR01628 285 GVNLYVKNLDDT-VTDEKLRELFSECGEITSAKVMLDEKGVS----RGFGF 330 (562)
T ss_pred CCEEEEeCCCCc-cCHHHHHHHHHhcCCeEEEEEEECCCCCc----CCeEE
Confidence 468999999975 89999999999999999999988755555 78776
No 33
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=96.59 E-value=0.0095 Score=51.32 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=54.3
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
+.+....||..-....+. |..|+=...-|.. .....++|||.++|.. ++.++|+++|++||.|..+++++.....+
T Consensus 54 ~~~~A~~Ai~~l~g~~l~--g~~i~v~~a~~~~-~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~ 129 (352)
T TIGR01661 54 RPEDAEKAVNSLNGLRLQ--NKTIKVSYARPSS-DSIKGANLYVSGLPKT-MTQHELESIFSPFGQIITSRILSDNVTGL 129 (352)
T ss_pred cHHHHHHHHhhcccEEEC--CeeEEEEeecccc-cccccceEEECCcccc-CCHHHHHHHHhccCCEEEEEEEecCCCCC
Confidence 567777888755555544 3333321111121 1234568999999975 89999999999999999999887543222
Q ss_pred CCCCccCCC
Q psy9843 166 YGNTRHFSF 174 (175)
Q Consensus 166 ~~~~~~~~~ 174 (175)
-|+|+|
T Consensus 130 ---~~g~~f 135 (352)
T TIGR01661 130 ---SKGVGF 135 (352)
T ss_pred ---cCcEEE
Confidence 367765
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.54 E-value=0.0066 Score=57.53 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=44.8
Q ss_pred CCCCCCC--CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 114 PLPAYDQ--TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 114 plp~~~~--~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
|.|.|+. ....++|+|.++|.+ ++.++|.++|++||.|..++|.++....+ |+|+|
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~-~tEd~L~~~F~~~G~I~~vrl~~D~sG~s----RGfaF 103 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRD-LYEDELVPLFEKAGPIYELRLMMDFSGQN----RGYAF 103 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCC-CCHHHHHHHHHhhCCEEEEEEEECCCCCc----cceEE
Confidence 5555542 123579999999985 99999999999999999999988754555 88887
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.49 E-value=0.0042 Score=48.87 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=39.6
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
.++|||.++|.+ .+-++|.++|+.||.|..|++.+.. ... .|+|+|
T Consensus 115 ~~~l~v~nL~~~-~~~~~l~~~F~~~g~~~~~~~~~d~~~~~----~~g~~~ 161 (306)
T COG0724 115 NNTLFVGNLPYD-VTEEDLRELFKKFGPVKRVRLVRDRETGK----SRGFAF 161 (306)
T ss_pred CceEEEeCCCCC-CCHHHHHHHHHhcCceeEEEeeeccccCc----cCceEE
Confidence 489999999975 9999999999999999999998864 333 488886
No 36
>smart00360 RRM RNA recognition motif.
Probab=96.35 E-value=0.0036 Score=39.69 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=26.9
Q ss_pred ecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 130 INIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 130 ~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
.++|.. .+.++|+.+|++||.|..+.+++...
T Consensus 2 ~~l~~~-~~~~~l~~~f~~~g~v~~~~i~~~~~ 33 (71)
T smart00360 2 GNLPPD-VTEEELRELFSKFGKIESVRLVRDKD 33 (71)
T ss_pred CCCCcc-cCHHHHHHHHHhhCCEeEEEEEeCCC
Confidence 467764 89999999999999999999887543
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.34 E-value=0.018 Score=52.28 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=38.5
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
.++|||.++|.. ++.++|+++|+.||.|..+.+.+. ....+ ++|+|
T Consensus 295 ~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~----~g~af 341 (509)
T TIGR01642 295 KDRIYIGNLPLY-LGEDQIKELLESFGDLKAFNLIKDIATGLS----KGYAF 341 (509)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCCc----CeEEE
Confidence 479999999975 999999999999999999998764 33334 78877
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.30 E-value=0.0048 Score=55.30 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=38.8
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.++|||.++|.. ++.++|+++|++||.|..|++.+..... .-|+|+|
T Consensus 186 ~~~l~v~nl~~~-~te~~l~~~f~~~G~i~~v~~~~d~~~g---~~~g~af 232 (457)
T TIGR01622 186 FLKLYVGNLHFN-ITEQELRQIFEPFGDIEDVQLHRDPETG---RSKGFGF 232 (457)
T ss_pred CCEEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCC---ccceEEE
Confidence 589999999975 8999999999999999999988754431 1377776
No 39
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=96.11 E-value=0.0069 Score=60.07 Aligned_cols=51 Identities=29% Similarity=0.435 Sum_probs=46.8
Q ss_pred ccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHh-cCCceEEeecCcEEEeC
Q psy9843 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALA-KSEKLQINEQGTKIRRV 112 (175)
Q Consensus 62 ~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~-~S~~lev~edg~~VRR~ 112 (175)
..+.+|||-|.+|++.-.+--+..+.+.|..|+. .|+.+||+.||.+||=+
T Consensus 472 ~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWR 523 (989)
T PF09421_consen 472 HPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWR 523 (989)
T ss_pred CcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeec
Confidence 4478999999999999999999999999999997 59999999999999954
No 40
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=95.79 E-value=0.012 Score=56.18 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
.++|||.++|.+ ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 107 ~~rLfVGnLp~~-~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgks----kGfAF 153 (612)
T TIGR01645 107 MCRVYVGSISFE-LREDTIRRAFDPFGPIKSINMSWDPATGKH----KGFAF 153 (612)
T ss_pred CCEEEEcCCCCC-CCHHHHHHHHHccCCEEEEEEeecCCCCCc----CCeEE
Confidence 478999999975 8999999999999999999987743 3334 88887
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=95.78 E-value=0.013 Score=53.82 Aligned_cols=38 Identities=11% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..++|||.++|.+.+|.++|.++|+.||.|..|++.+.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 34699999999745899999999999999999998864
No 42
>KOG0113|consensus
Probab=95.46 E-value=0.016 Score=50.99 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=40.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
+-+|++|-.++-+ ++...|+..|+.||.|..|+|.+..- .-| |+|||
T Consensus 100 Py~TLFv~RLnyd-T~EskLrreF~~YG~IkrirlV~d~vTgks----kGYAF 147 (335)
T KOG0113|consen 100 PYKTLFVARLNYD-TSESKLRREFEKYGPIKRIRLVRDKVTGKS----KGYAF 147 (335)
T ss_pred ccceeeeeecccc-ccHHHHHHHHHhcCcceeEEEeeecccCCc----cceEE
Confidence 4689999999986 78999999999999999999998633 444 99998
No 43
>KOG0126|consensus
Probab=95.29 E-value=0.0045 Score=51.21 Aligned_cols=48 Identities=33% Similarity=0.378 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+.--||+-|+|-+ .|..+|-..|++||.|+.|-+.|.....- -++|||
T Consensus 34 dsA~Iyiggl~~~-LtEgDil~VFSqyGe~vdinLiRDk~TGK---SKGFaF 81 (219)
T KOG0126|consen 34 DSAYIYIGGLPYE-LTEGDILCVFSQYGEIVDINLIRDKKTGK---SKGFAF 81 (219)
T ss_pred cceEEEECCCccc-ccCCcEEEEeeccCceEEEEEEecCCCCc---ccceEE
Confidence 3457999999986 89999999999999999999888644322 489987
No 44
>KOG0122|consensus
Probab=95.16 E-value=0.026 Score=48.40 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=40.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
+..||-|.+++.+ ++.++|+++|.+||.|..|-+-|++. ..+ |+|||
T Consensus 188 D~~tvRvtNLsed-~~E~dL~eLf~~fg~i~rvylardK~TG~~----kGFAF 235 (270)
T KOG0122|consen 188 DEATVRVTNLSED-MREDDLEELFRPFGPITRVYLARDKETGLS----KGFAF 235 (270)
T ss_pred ccceeEEecCccc-cChhHHHHHhhccCccceeEEEEccccCcc----cceEE
Confidence 4568999999975 99999999999999999999888644 555 99998
No 45
>KOG0114|consensus
Probab=94.92 E-value=0.038 Score=42.09 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=31.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
.|-+||.++|-. .|-|++=++|.+||.|.+||+=-
T Consensus 18 nriLyirNLp~~-ITseemydlFGkyg~IrQIRiG~ 52 (124)
T KOG0114|consen 18 NRILYIRNLPFK-ITSEEMYDLFGKYGTIRQIRIGN 52 (124)
T ss_pred heeEEEecCCcc-ccHHHHHHHhhcccceEEEEecC
Confidence 478999999975 99999999999999999999853
No 46
>KOG0130|consensus
Probab=94.54 E-value=0.051 Score=43.21 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+...-|+|.++.++ +|.++|...|..||+|.+|.+--.-+ . +++|+||+
T Consensus 70 VEGwIi~VtgvHeE-atEedi~d~F~dyGeiKNihLNLDRR--t-Gy~KGYaL 118 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEE-ATEEDIHDKFADYGEIKNIHLNLDRR--T-GYVKGYAL 118 (170)
T ss_pred eeeEEEEEeccCcc-hhHHHHHHHHhhcccccceeeccccc--c-ccccceee
Confidence 34567789999976 89999999999999999999765433 2 56888875
No 47
>KOG0144|consensus
Probab=94.46 E-value=0.014 Score=53.63 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=71.2
Q ss_pred HHHHhhhhhhcc--CCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc-------eEEe-ec
Q psy9843 36 KRIIDQVEFYFS--DENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK-------LQIN-EQ 105 (175)
Q Consensus 36 ~~I~~QvEfYFS--d~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~-------lev~-ed 105 (175)
..|+.-.|-|=. .-||.||+--. -+.|+.-| .|...| +-+..+.||-.-.. |+|- .|
T Consensus 49 ~dlr~lFe~yg~V~einl~kDk~t~-----~s~gcCFv----~~~trk----~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 49 KDLRELFEKYGNVYEINLIKDKSTG-----QSKGCCFV----KYYTRK----EADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred HHHHHHHHHhCceeEEEeecccccC-----cccceEEE----EeccHH----HHHHHHHHhhcccccCCCCcceeecccc
Confidence 345555555521 45788886433 34576532 333322 34555667764332 3332 22
Q ss_pred CcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 106 GTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 106 g~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+++-| -.++|-++|--++.. .|..+|+++|++||.|..++|.|....+. |+++|
T Consensus 116 ~E~er----------~~~e~KLFvg~lsK~-~te~evr~iFs~fG~Ied~~ilrd~~~~s----RGcaF 169 (510)
T KOG0144|consen 116 GERER----------IVEERKLFVGMLSKQ-CTENEVREIFSRFGHIEDCYILRDPDGLS----RGCAF 169 (510)
T ss_pred hhhhc----------cccchhhhhhhcccc-ccHHHHHHHHHhhCccchhhheecccccc----cceeE
Confidence 22211 134577888888864 89999999999999999999999999999 99887
No 48
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=94.04 E-value=0.093 Score=42.88 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=35.8
Q ss_pred cCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc--eEEe---ecCcEEEeCC
Q psy9843 63 RNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK--LQIN---EQGTKIRRVD 113 (175)
Q Consensus 63 ~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~--lev~---edg~~VRR~~ 113 (175)
.+++|||+|+.|+...+++....+.+.|.+.++.++. .++. .++.+||-+.
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 3789999999999999999888889999999998764 6776 6678999764
No 49
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.78 E-value=0.069 Score=35.01 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=28.7
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
+.|.|.|||++ ..+.|...|..||+|..+.+.
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcC
Confidence 68999999974 788999999999999998887
No 50
>KOG0145|consensus
Probab=93.67 E-value=0.1 Score=45.56 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=47.4
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
+..+-.+|+..-.-|.+. .+.|+=...-|..+. +..-.+||.|+|.+ +|+.+++.+|++||.|..-|+.-+
T Consensus 92 ~p~DAe~AintlNGLrLQ--~KTIKVSyARPSs~~-Ik~aNLYvSGlPkt-MtqkelE~iFs~fGrIItSRiL~d 162 (360)
T KOG0145|consen 92 RPKDAEKAINTLNGLRLQ--NKTIKVSYARPSSDS-IKDANLYVSGLPKT-MTQKELEQIFSPFGRIITSRILVD 162 (360)
T ss_pred ChHHHHHHHhhhcceeec--cceEEEEeccCChhh-hcccceEEecCCcc-chHHHHHHHHHHhhhhhhhhhhhh
Confidence 455666666655555554 233443333344332 33457999999975 999999999999999987776653
No 51
>KOG0117|consensus
Probab=93.48 E-value=0.11 Score=48.09 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=31.0
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
+-+||++++.+ +|.|.|++.|+.||.|..|..+|+
T Consensus 260 KvLYVRNL~~~-tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 260 KVLYVRNLMES-TTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred eeeeeeccchh-hhHHHHHHHHHhccceEEeecccc
Confidence 57999999975 899999999999999999987743
No 52
>KOG0148|consensus
Probab=93.24 E-value=0.12 Score=45.07 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=33.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
.+-.|||+=+++.- .|.+.++..|++||.|.-||+-+.
T Consensus 162 p~NtsVY~G~I~~~-lte~~mr~~Fs~fG~I~EVRvFk~ 199 (321)
T KOG0148|consen 162 PDNTSVYVGNIASG-LTEDLMRQTFSPFGPIQEVRVFKD 199 (321)
T ss_pred CCCceEEeCCcCcc-ccHHHHHHhcccCCcceEEEEecc
Confidence 34589999999973 899999999999999999999863
No 53
>KOG0110|consensus
Probab=93.12 E-value=0.051 Score=52.36 Aligned_cols=44 Identities=39% Similarity=0.581 Sum_probs=38.1
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
-|+|+++|-+ ++..+|+.+|++||.+..||++.. ++.. .|+|+|
T Consensus 615 KIlVRNipFe-At~rEVr~LF~aFGqlksvRlPKK~~k~a----~rGF~F 659 (725)
T KOG0110|consen 615 KILVRNIPFE-ATKREVRKLFTAFGQLKSVRLPKKIGKGA----HRGFGF 659 (725)
T ss_pred eeeeeccchH-HHHHHHHHHHhcccceeeeccchhhcchh----hcccee
Confidence 5899999986 899999999999999999999986 3333 488887
No 54
>KOG2278|consensus
Probab=93.03 E-value=0.17 Score=41.58 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=40.8
Q ss_pred cCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc----eEEeecCcEEEeCC
Q psy9843 63 RNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK----LQINEQGTKIRRVD 113 (175)
Q Consensus 63 ~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~----lev~edg~~VRR~~ 113 (175)
.++|||||+..+++.|+.+.....+++|.++.+.... +..-+++.+||-.+
T Consensus 29 m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndKqRF~l~d~~~el~IrAnQ 83 (207)
T KOG2278|consen 29 MRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDKQRFSLIDEAGELLIRANQ 83 (207)
T ss_pred ccCCCceEHHHHhccchhcccCCcHHHHHHHHhccccceEEeecCCCcEEEEecC
Confidence 3689999999999999999999899999999997663 32224556788653
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=93.02 E-value=0.14 Score=47.03 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=30.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCc--ccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGE--IALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~--V~~Vrl~r 159 (175)
.++|+|.++|.+ ++.++|+++|+.||. |..|++..
T Consensus 394 s~~L~v~NLp~~-~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 394 SATLHLSNIPLS-VSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred CcEEEEecCCCC-CCHHHHHHHHHhcCCccceEEEEec
Confidence 469999999975 899999999999998 88888753
No 56
>KOG0108|consensus
Probab=92.33 E-value=0.16 Score=46.72 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=40.2
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
++|+|-++|-+ ++.|+|..+|+..|.|..+|+-.+.+..- .|+|+|
T Consensus 19 ~~v~vgnip~~-~se~~l~~~~~~~g~v~s~~~v~D~~tG~---~~G~~f 64 (435)
T KOG0108|consen 19 SSVFVGNIPYE-GSEEQLLSIFSGVGPVLSFRLVYDRETGK---PKGFGF 64 (435)
T ss_pred cceEecCCCCc-ccHHHHHHHHhccCccceeeecccccCCC---cCceee
Confidence 89999999986 89999999999999999999887655433 599987
No 57
>KOG4207|consensus
Probab=92.19 E-value=0.14 Score=43.29 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.3
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
-++-|.++.-. ++.++|..+|++||.|--|-|+|+ ....+ |+|||
T Consensus 14 ~SLkVdNLTyR-Tspd~LrrvFekYG~vgDVyIPrdr~Tr~s----RgFaF 59 (256)
T KOG4207|consen 14 TSLKVDNLTYR-TSPDDLRRVFEKYGRVGDVYIPRDRYTRQS----RGFAF 59 (256)
T ss_pred eeEEecceecc-CCHHHHHHHHHHhCcccceecccccccccc----cceeE
Confidence 36778888654 789999999999999999999995 34455 99998
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=92.01 E-value=0.77 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=31.2
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccC--CcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPC--GEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~--G~V~~Vrl~r 159 (175)
.++|||.++|.. ++.|+|+++|++| |.|..|++.+
T Consensus 233 ~k~LfVgNL~~~-~tee~L~~~F~~f~~G~I~rV~~~r 269 (578)
T TIGR01648 233 VKILYVRNLMTT-TTEEIIEKSFSEFKPGKVERVKKIR 269 (578)
T ss_pred ccEEEEeCCCCC-CCHHHHHHHHHhcCCCceEEEEeec
Confidence 479999999974 8999999999999 9999998653
No 59
>KOG0127|consensus
Probab=91.89 E-value=0.28 Score=46.55 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=34.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
..+||+|.++|-+ +|-|+|.+.|+.||.|.+++++...
T Consensus 291 ~~~tVFvRNL~fD-~tEEel~~~fskFG~v~ya~iV~~k 328 (678)
T KOG0127|consen 291 EGKTVFVRNLPFD-TTEEELKEHFSKFGEVKYAIIVKDK 328 (678)
T ss_pred ccceEEEecCCcc-ccHHHHHHHHHhhccceeEEEEecc
Confidence 3589999999986 8999999999999999999988743
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=91.79 E-value=0.24 Score=46.72 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..-+|||=|++.+ ++.++|++.|++||.|..|.|+|.
T Consensus 9 ~gMRIYVGNLSyd-VTEDDLravFSeFGsVkdVEIpRE 45 (759)
T PLN03213 9 GGVRLHVGGLGES-VGRDDLLKIFSPMGTVDAVEFVRT 45 (759)
T ss_pred cceEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEecc
Confidence 3468999999975 999999999999999999999876
No 61
>KOG4206|consensus
Probab=91.67 E-value=0.2 Score=42.29 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=31.8
Q ss_pred ceEEEecCCCCCCCHHHHHH----HhccCCcccEEEeeCCC
Q psy9843 125 RTIVAINIPPESATIELVAE----MFKPCGEIALIRLLRPG 161 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~----~F~~~G~V~~Vrl~r~~ 161 (175)
.|+||.++.. ....++|+. +|++||+|..|+.+++.
T Consensus 10 ~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~ 49 (221)
T KOG4206|consen 10 GTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTP 49 (221)
T ss_pred ceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCC
Confidence 4999999985 489999998 99999999999988753
No 62
>KOG0116|consensus
Probab=91.18 E-value=0.22 Score=45.68 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=30.8
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..+|||.++|.+ ++.++|+++|+.||.|...+|..
T Consensus 288 ~~~i~V~nlP~d-a~~~~l~~~Fk~FG~Ik~~~I~v 322 (419)
T KOG0116|consen 288 GLGIFVKNLPPD-ATPAELEEVFKQFGPIKEGGIQV 322 (419)
T ss_pred ccceEeecCCCC-CCHHHHHHHHhhcccccccceEE
Confidence 457999999986 89999999999999998887655
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=90.07 E-value=0.39 Score=43.56 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.6
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPC 149 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~ 149 (175)
....|+|||-++|.. +|.++|.++|+.|
T Consensus 172 ~~~~r~lyVgnLp~~-~t~~~l~~~F~~~ 199 (509)
T TIGR01642 172 TRQARRLYVGGIPPE-FVEEAVVDFFNDL 199 (509)
T ss_pred CccccEEEEeCCCCC-CCHHHHHHHHHHH
Confidence 356799999999985 8999999999975
No 64
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=89.65 E-value=0.7 Score=37.69 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=38.5
Q ss_pred cCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc--eEEeecCcEEEeCC
Q psy9843 63 RNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK--LQINEQGTKIRRVD 113 (175)
Q Consensus 63 ~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~--lev~edg~~VRR~~ 113 (175)
.+++|||+|+.|+...+.+....+.+.|.+....++. .+++ +.+||-..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~q 78 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQ 78 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEecc
Confidence 3789999999999887755444578999999998875 5665 67999764
No 65
>KOG0117|consensus
Probab=89.50 E-value=1.3 Score=41.12 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=45.9
Q ss_pred CCCCCCCCC--CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 113 DPLPAYDQT--TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 113 ~plp~~~~~--~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
-|-|.|+.. ...+-|||=++|.+ +..|+|.-+|.+-|+|--+||.. ++.+ ++=|+|||
T Consensus 70 gPpP~weg~~p~~G~EVfvGkIPrD-~~EdeLvplfEkiG~I~elRLMm--D~~s-G~nRGYAF 129 (506)
T KOG0117|consen 70 GPPPGWEGPPPPRGCEVFVGKIPRD-VFEDELVPLFEKIGKIYELRLMM--DPFS-GDNRGYAF 129 (506)
T ss_pred CCCCcccCCCCCCCceEEecCCCcc-ccchhhHHHHHhccceeeEEEee--cccC-CCCcceEE
Confidence 355666532 23468999999976 99999999999999999999776 4455 66799998
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=89.42 E-value=0.31 Score=32.85 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=25.1
Q ss_pred HHHHHHHhc----cCCcccEEE-eeCCCCCCCCCCCccCCC
Q psy9843 139 IELVAEMFK----PCGEIALIR-LLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 139 ~e~i~~~F~----~~G~V~~Vr-l~r~~~~~p~~~~~~~~~ 174 (175)
.++|.++|+ .||.|..|. +..+....+ +..|+|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~-~~~rG~~f 41 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYE-NHKRGNVY 41 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCC-CCCcEEEE
Confidence 357888888 999999985 666554443 44688876
No 67
>KOG0145|consensus
Probab=88.87 E-value=0.58 Score=40.97 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=29.9
Q ss_pred Cce-EEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 124 SRT-IVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 124 ~rt-v~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.|| ++|-=+|. .+|.||++.+|++.|+|++..+.|++
T Consensus 40 skTNLIvNYLPQ-~MTqdE~rSLF~SiGeiEScKLvRDK 77 (360)
T KOG0145|consen 40 SKTNLIVNYLPQ-NMTQDELRSLFGSIGEIESCKLVRDK 77 (360)
T ss_pred ccceeeeeeccc-ccCHHHHHHHhhcccceeeeeeeecc
Confidence 455 44555565 69999999999999999999999854
No 68
>KOG1548|consensus
Probab=87.94 E-value=0.55 Score=42.21 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=24.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcc
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEI 152 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V 152 (175)
..|||.|+|.+ .|++++.++|+.||-|
T Consensus 135 t~VYVsgLP~D-iT~dE~~~~~sKcGiI 161 (382)
T KOG1548|consen 135 TSVYVSGLPLD-ITVDEFAEVMSKCGII 161 (382)
T ss_pred ceEEecCCCCc-ccHHHHHHHHHhcceE
Confidence 36999999986 9999999999999976
No 69
>KOG0132|consensus
Probab=86.64 E-value=0.75 Score=45.22 Aligned_cols=51 Identities=33% Similarity=0.425 Sum_probs=39.2
Q ss_pred EEEeCCCCCCCCC---CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 108 KIRRVDPLPAYDQ---TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 108 ~VRR~~plp~~~~---~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
+=||+.-||.... .+-.||+.|-+++. .++.++|..+|+.||.|.+|-|.-
T Consensus 402 reRr~kglP~I~pd~isV~SrTLwvG~i~k-~v~e~dL~~~feefGeiqSi~li~ 455 (894)
T KOG0132|consen 402 RERRKKGLPTIPPDHISVCSRTLWVGGIPK-NVTEQDLANLFEEFGEIQSIILIP 455 (894)
T ss_pred cccccccCCCCCCcceeEeeeeeeeccccc-hhhHHHHHHHHHhcccceeEeecc
Confidence 4455555554332 24579999999997 499999999999999999998764
No 70
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=86.22 E-value=0.71 Score=29.37 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=16.6
Q ss_pred HHHHhccCCcccEEEeeCCC
Q psy9843 142 VAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 142 i~~~F~~~G~V~~Vrl~r~~ 161 (175)
|.++|++||+|..|.+.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~ 20 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK 20 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS
T ss_pred ChHHhCCcccEEEEEEEeCC
Confidence 56899999999999998765
No 71
>KOG4660|consensus
Probab=85.20 E-value=0.75 Score=43.42 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=36.6
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~ 163 (175)
+..+||++|-++|.. ++-++|..+|+.||+|.-||+-+..+.
T Consensus 72 ~~~~~~L~v~nl~~~-Vsn~~L~~~f~~yGeir~ir~t~~~~~ 113 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRS-VSNDTLLRIFGAYGEIREIRETPNKRG 113 (549)
T ss_pred cCccceEEEEecCCc-CCHHHHHHHHHhhcchhhhhcccccCc
Confidence 467899999999975 999999999999999999998765543
No 72
>KOG0144|consensus
Probab=84.80 E-value=1.1 Score=41.60 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=34.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~ 163 (175)
.+.--++|-.+|.. ++..+|+++|++||.|..|-++|++..
T Consensus 32 ~~~vKlfVgqIprt-~sE~dlr~lFe~yg~V~einl~kDk~t 72 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRT-ASEKDLRELFEKYGNVYEINLIKDKST 72 (510)
T ss_pred chhhhheeccCCcc-ccHHHHHHHHHHhCceeEEEeeccccc
Confidence 34456889999975 999999999999999999999987653
No 73
>KOG0127|consensus
Probab=84.48 E-value=1 Score=42.84 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=37.3
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..-++|.++|-. ..-++|+.+|+.||.|.-|-|||.++.- +.+|+|
T Consensus 117 k~rLIIRNLPf~-~k~~dLk~vFs~~G~V~Ei~IP~k~dgk----lcGFaF 162 (678)
T KOG0127|consen 117 KWRLIIRNLPFK-CKKPDLKNVFSNFGKVVEIVIPRKKDGK----LCGFAF 162 (678)
T ss_pred cceEEeecCCcc-cCcHHHHHHHhhcceEEEEEcccCCCCC----ccceEE
Confidence 557899999964 6677999999999999999999754433 358887
No 74
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=84.26 E-value=1.4 Score=32.69 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=21.2
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
.|.+.|++.+ ++.++|++.|+.||.|.+|-+.+.
T Consensus 3 il~~~g~~~~-~~re~iK~~f~~~g~V~yVD~~~G 36 (105)
T PF08777_consen 3 ILKFSGLGEP-TSREDIKEAFSQFGEVAYVDFSRG 36 (105)
T ss_dssp EEEEEE--SS---HHHHHHHT-SS--EEEEE--TT
T ss_pred EEEEecCCCC-cCHHHHHHHHHhcCCcceEEecCC
Confidence 4678887764 789999999999999999998764
No 75
>KOG0123|consensus
Probab=83.51 E-value=1.4 Score=39.67 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=38.0
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.-++|+++++. +.+.+.|..+|+.||.|.++.+.+.....+ |+|.|
T Consensus 167 ~t~v~vk~~~~-~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~----~~~gf 212 (369)
T KOG0123|consen 167 FTNVYVKNLEE-DSTDEELKDLFSAYGSITSVAVMRDSIGKS----KGFGF 212 (369)
T ss_pred hhhhheecccc-ccchHHHHHhhcccCcceEEEEeecCCCCC----CCccc
Confidence 34789999985 489999999999999999999887655556 67765
No 76
>KOG0148|consensus
Probab=83.14 E-value=1.2 Score=39.03 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=34.7
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
-|.|..|-.+ .+-|.|++-|.+||+|+..|+.|+ ...-+ |+|.|
T Consensus 64 hvfvgdls~e-I~~e~lr~aF~pFGevS~akvirD~~T~Ks----KGYgF 108 (321)
T KOG0148|consen 64 HVFVGDLSPE-IDNEKLREAFAPFGEVSDAKVIRDMNTGKS----KGYGF 108 (321)
T ss_pred eEEehhcchh-cchHHHHHHhccccccccceEeecccCCcc----cceeE
Confidence 4567777665 889999999999999999998775 44444 77776
No 77
>KOG0123|consensus
Probab=82.39 E-value=1.2 Score=40.06 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
....++|+++++. ..+.+.+.+.|+.||+|.++++.......+ ++|.|
T Consensus 268 ~~~~nl~vknld~-~~~~e~L~~~f~~~GeI~s~kv~~~~~g~s----kG~gf 315 (369)
T KOG0123|consen 268 LQGANLYVKNLDE-TLSDEKLRKIFSSFGEITSAKVMVDENGKS----KGFGF 315 (369)
T ss_pred ccccccccccCcc-ccchhHHHHHHhcccceeeEEEEeccCCCc----cceEE
Confidence 3456899999875 489999999999999999999887654444 55544
No 78
>KOG0125|consensus
Probab=82.06 E-value=1.6 Score=39.24 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=32.9
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
.+.++|.++|-. .-..+|+++|.+||+|..|.|.-..|
T Consensus 96 pkRLhVSNIPFr-FRdpDL~aMF~kfG~VldVEIIfNER 133 (376)
T KOG0125|consen 96 PKRLHVSNIPFR-FRDPDLRAMFEKFGKVLDVEIIFNER 133 (376)
T ss_pred CceeEeecCCcc-ccCccHHHHHHhhCceeeEEEEeccC
Confidence 478999999975 77789999999999999999986544
No 79
>PTZ00315 2'-phosphotransferase; Provisional
Probab=81.67 E-value=2.9 Score=40.06 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=41.1
Q ss_pred cCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc--eEEe---ecC-cEEEeCC
Q psy9843 63 RNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK--LQIN---EQG-TKIRRVD 113 (175)
Q Consensus 63 ~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~--lev~---edg-~~VRR~~ 113 (175)
-+++|||+|+.|+.-.+.+....+.+.|.+.+++++. .+++ ++| .+||-..
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 4789999999999988887666689999999998874 7777 455 4799753
No 80
>KOG0124|consensus
Probab=80.91 E-value=2.2 Score=39.00 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.5
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
-.|||...+++ .+.++|++.|+.||+|.+-.+-|.
T Consensus 211 nRiYVaSvHpD-LSe~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 211 NRIYVASVHPD-LSETDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred heEEeeecCCC-ccHHHHHHHHHhhcceeeEEeecc
Confidence 36999999986 899999999999999999998873
No 81
>KOG4205|consensus
Probab=80.58 E-value=3.5 Score=36.51 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=36.1
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
.+.|.|-++|.. .+.++++.+|.+||.|.-+-+..+ ....| |+|.|
T Consensus 97 tkkiFvGG~~~~-~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~----rgFgf 143 (311)
T KOG4205|consen 97 TKKIFVGGLPPD-TTEEDFKDYFEQFGKVADVVIMYDKTTSRP----RGFGF 143 (311)
T ss_pred eeEEEecCcCCC-CchHHHhhhhhccceeEeeEEeeccccccc----cccee
Confidence 457899999975 899999999999998877776554 34444 77765
No 82
>KOG4208|consensus
Probab=79.12 E-value=2.2 Score=35.82 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=32.7
Q ss_pred eEEEecCCCCCCCHHHHHHHhccC-CcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPC-GEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~-G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
-+|+...|- -...-++..+|.++ |.|..+||-|..+..- =|||||
T Consensus 51 ~~~~~~~p~-g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGN---SKgYAF 96 (214)
T KOG4208|consen 51 VVYVDHIPH-GFFETEILNYFRQFGGTVTRFRLSRNKRTGN---SKGYAF 96 (214)
T ss_pred ceeeccccc-chhHHHHhhhhhhcCCeeEEEEeecccccCC---cCceEE
Confidence 356666654 35667999999998 7889999977655332 499998
No 83
>KOG0153|consensus
Probab=78.25 E-value=3.2 Score=37.47 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
+...+|+||.++-. ..+..+|...|-+||.|.+|++.-
T Consensus 225 D~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~ 262 (377)
T KOG0153|consen 225 DTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP 262 (377)
T ss_pred ccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec
Confidence 34568999999976 489999999999999999999553
No 84
>KOG0121|consensus
Probab=76.61 E-value=2.7 Score=33.29 Aligned_cols=42 Identities=31% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTK 165 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p 165 (175)
...||||-++.- .++.|.|=++|+.+|.|..|=|=-. .++.|
T Consensus 35 ~S~tvyVgNlSf-yttEEqiyELFs~cG~irriiMGLdr~kktp 77 (153)
T KOG0121|consen 35 KSCTVYVGNLSF-YTTEEQIYELFSKCGDIRRIIMGLDRFKKTP 77 (153)
T ss_pred hcceEEEeeeee-eecHHHHHHHHHhccchheeEeccccCCcCc
Confidence 457999999875 4789999999999999998887543 34444
No 85
>KOG0131|consensus
Probab=75.77 E-value=1.9 Score=35.75 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.3
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.-|||+-+++.. ++-+-|-++|-+.|+|..|+|+|..
T Consensus 9 d~tiyvgnld~k-vs~~~l~EL~iqagpVv~i~iPkDr 45 (203)
T KOG0131|consen 9 DATLYVGNLDEK-VSEELLYELFIQAGPVVNLHIPKDR 45 (203)
T ss_pred CceEEEecCCHH-HHHHHHHHHHHhcCceeeeecchhh
Confidence 459999999964 8999999999999999999999864
No 86
>KOG4209|consensus
Probab=75.53 E-value=2.2 Score=36.10 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 120 ~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...+.++|++.+..- ..|.++++.-|+.||.|..|-|+.+....+ .|+|+|
T Consensus 97 ~~~d~~sv~v~nvd~-~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~---~k~~~y 147 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDF-LVTLTKIELHFESCGGINRVTVPKDKFRGH---PKGFAY 147 (231)
T ss_pred hccCCceEEEecccc-ccccchhhheeeccCCccceeeeccccCCC---cceeEE
Confidence 346778999999876 478888999999999999888887644432 488875
No 87
>KOG0149|consensus
Probab=75.46 E-value=3.7 Score=35.18 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEE-eeCCCCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIR-LLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vr-l~r~~~~~p~~~~~~~~~ 174 (175)
--|+|=|++=+ .+-|.++++|++||+|+..- +......-+ |+|-|
T Consensus 13 TKifVggL~w~-T~~~~l~~yFeqfGeI~eavvitd~~t~rs----kGyGf 58 (247)
T KOG0149|consen 13 TKIFVGGLAWE-THKETLRRYFEQFGEIVEAVVITDKNTGRS----KGYGF 58 (247)
T ss_pred EEEEEcCcccc-cchHHHHHHHHHhCceEEEEEEeccCCccc----cceee
Confidence 35889999865 67899999999999986655 443222233 66655
No 88
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=70.03 E-value=5 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=19.3
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCccc
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIA 153 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~ 153 (175)
-|+--.||.+ +...+|-.+|++||.|.
T Consensus 10 HVFhltFPke-WK~~DI~qlFspfG~I~ 36 (87)
T PF08675_consen 10 HVFHLTFPKE-WKTSDIYQLFSPFGQIY 36 (87)
T ss_dssp CEEEEE--TT---HHHHHHHCCCCCCEE
T ss_pred eEEEEeCchH-hhhhhHHHHhccCCcEE
Confidence 4677779986 89999999999999874
No 89
>KOG0111|consensus
Probab=69.06 E-value=2.7 Score=36.05 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
...||+||-|+-.+ ++.--|.+.|-+||.|.-|+++-..
T Consensus 8 ~~KrtlYVGGlade-VtekvLhaAFIPFGDI~dIqiPlDy 46 (298)
T KOG0111|consen 8 NQKRTLYVGGLADE-VTEKVLHAAFIPFGDIKDIQIPLDY 46 (298)
T ss_pred ccceeEEeccchHH-HHHHHHHhccccccchhhcccccch
Confidence 46799999999864 8888899999999999999988653
No 90
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=68.12 E-value=4.2 Score=30.17 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEE
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vr 156 (175)
..+.|.|-|||+. ....|.+.|++||.|....
T Consensus 5 ~~~wVtVFGfp~~--~~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 5 SETWVTVFGFPPS--ASNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp GCCEEEEE---GG--GHHHHHHHHHCCS-EECEE
T ss_pred CCeEEEEEccCHH--HHHHHHHHHHhcceEEEee
Confidence 4568999999974 7889999999999987665
No 91
>KOG0147|consensus
Probab=68.09 E-value=3.9 Score=38.70 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=36.1
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
+.+||-+++.. ++.+.+..+|++||.|..|.+.+.- .... |+|.|
T Consensus 279 ~rl~vgnLHfN-ite~~lr~ifepfg~Ie~v~l~~d~~tG~s----kgfGf 324 (549)
T KOG0147|consen 279 RRLYVGNLHFN-ITEDMLRGIFEPFGKIENVQLTKDSETGRS----KGFGF 324 (549)
T ss_pred hhhhhcccccC-chHHHHhhhccCcccceeeeeccccccccc----cCcce
Confidence 34899999874 8999999999999999999988754 3333 67765
No 92
>KOG0107|consensus
Probab=67.44 E-value=11 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
.+-|||=+++.. ++-.+|+..|..||.+-.|=|-+
T Consensus 10 ~~kVYVGnL~~~-a~k~eLE~~F~~yG~lrsvWvAr 44 (195)
T KOG0107|consen 10 NTKVYVGNLGSR-ATKRELERAFSKYGPLRSVWVAR 44 (195)
T ss_pred CceEEeccCCCC-cchHHHHHHHHhcCcceeEEEee
Confidence 467999999975 89999999999999998776544
No 93
>KOG0533|consensus
Probab=66.94 E-value=5.9 Score=33.92 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.7
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
-.|+|.++|.. ++-++|+++|..||.+..+.+-.
T Consensus 84 ~~v~v~NL~~~-V~~~Dl~eLF~~~~~~~r~~vhy 117 (243)
T KOG0533|consen 84 TKVNVSNLPYG-VIDADLKELFAEFGELKRVAVHY 117 (243)
T ss_pred ceeeeecCCcC-cchHHHHHHHHHhccceEEeecc
Confidence 47999999975 89999999999999887776544
No 94
>KOG0415|consensus
Probab=66.07 E-value=7.4 Score=35.55 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 115 LPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 115 lp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
||..+...+.--++|-.+-+- +|-|+|+-+|+.||+|.+-.+.|.
T Consensus 230 lpdAd~~PPeNVLFVCKLNPV-TtDeDLeiIFSrFG~i~sceVIRD 274 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPV-TTDEDLEIIFSRFGKIVSCEVIRD 274 (479)
T ss_pred CcccccCCCcceEEEEecCCc-ccccchhhHHhhcccceeeeEEec
Confidence 555443334445666666654 578899999999999988777764
No 95
>KOG2590|consensus
Probab=62.82 E-value=2 Score=39.84 Aligned_cols=72 Identities=19% Similarity=0.107 Sum_probs=60.3
Q ss_pred CCHHHHHHHHh--hhhhhccCCCCCcchHHHHhhccCCCC---ceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEe
Q psy9843 30 PDEDLTKRIID--QVEFYFSDENIVKDAFLLKHVKRNKEG---FVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQIN 103 (175)
Q Consensus 30 ~~e~l~~~I~~--QvEfYFSd~NL~~D~fL~~~~~~~~~g---~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~ 103 (175)
|...+.+.+.. +.+||++-.++++|.|+...+. ..| +.+++.+.+|.+....+++...+..++..|...+..
T Consensus 93 ps~~l~e~~~~~k~~s~~~~~~~~~~~~~~~~k~~--~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa~~~~~ 169 (448)
T KOG2590|consen 93 PSPPLKEYSKSDKKKSWPASKPFTPRDSFKGSKPT--NTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSASSNPV 169 (448)
T ss_pred ccccccccccccccccCcccCCCCccccccCCCcc--ccCCCccCCCccccccccccCcccccccccCcCCCCCcCCcC
Confidence 55556665555 9999999999999999999884 555 889999999999999999999999999886655544
No 96
>KOG0146|consensus
Probab=62.33 E-value=8.8 Score=33.90 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+.|.++|--+.. ....|+|+++|.+||.+..+-+.|.-+..+ |+-||
T Consensus 18 ~drklfvgml~k-qq~e~dvrrlf~pfG~~~e~tvlrg~dg~s----KGCAF 64 (371)
T KOG0146|consen 18 DDRKLFVGMLNK-QQSEDDVRRLFQPFGNIEECTVLRGPDGNS----KGCAF 64 (371)
T ss_pred cchhhhhhhhcc-cccHHHHHHHhcccCCcceeEEecCCCCCC----CCceE
Confidence 456666655554 367899999999999999999988666555 66554
No 97
>KOG4454|consensus
Probab=59.25 E-value=3.5 Score=35.32 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
..|||||-++-.+ ++.|-|.++|-.-|+|..|-|+...+
T Consensus 8 ~drtl~v~n~~~~-v~eelL~ElfiqaGPV~kv~ip~~~d 46 (267)
T KOG4454|consen 8 MDRTLLVQNMYSG-VSEELLSELFIQAGPVYKVGIPSGQD 46 (267)
T ss_pred hhhHHHHHhhhhh-hhHHHHHHHhhccCceEEEeCCCCcc
Confidence 3689999999864 99999999999999999999988654
No 98
>KOG4307|consensus
Probab=58.14 E-value=14 Score=36.48 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=36.3
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCc-ccEEEeeCCCCCCCCCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGE-IALIRLLRPGKYTKYGNT 169 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~-V~~Vrl~r~~~~~p~~~~ 169 (175)
|-|-+.++|-+ +++++|-+||..|-. .-+|++++..+..|-+|.
T Consensus 868 ~V~~~~n~Pf~-v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~ 912 (944)
T KOG4307|consen 868 RVLSCNNFPFD-VTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGEC 912 (944)
T ss_pred eEEEecCCCcc-ccHHHHHHHhcccccCCCceeEeecCCCCcccce
Confidence 45668899975 999999999999985 588999999888885553
No 99
>KOG0124|consensus
Probab=56.19 E-value=7.7 Score=35.62 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=34.1
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+.|||-.+.-+ ...|.|+.-|.+||+|.+|-|-- +++. .--|+|||
T Consensus 114 cRvYVGSIsfE-l~EDtiR~AF~PFGPIKSInMSW--Dp~T-~kHKgFAF 159 (544)
T KOG0124|consen 114 CRVYVGSISFE-LREDTIRRAFDPFGPIKSINMSW--DPAT-GKHKGFAF 159 (544)
T ss_pred HheeeeeeEEE-echHHHHhhccCCCCcceeeccc--cccc-ccccceEE
Confidence 45777666544 67789999999999999999876 3333 33578887
No 100
>KOG1190|consensus
Probab=52.62 E-value=17 Score=33.75 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
..|-|.++++|-| .+.+++-+++.+||+|+.+-|.+..
T Consensus 27 pSkV~HlRnlp~e-~tE~elI~Lg~pFG~vtn~~~lkGk 64 (492)
T KOG1190|consen 27 PSKVVHLRNLPWE-VTEEELISLGLPFGKVTNLLMLKGK 64 (492)
T ss_pred CcceeEeccCCcc-ccHHHHHHhcccccceeeeeeeccc
Confidence 4678999999976 8999999999999999999988753
No 101
>KOG4212|consensus
Probab=51.00 E-value=13 Score=34.81 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=34.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
..+++|+|+++|-+ .|.+-|+.-|..||.|.++-|.-+|.
T Consensus 534 rKa~qIiirNlP~d-fTWqmlrDKfre~G~v~yadime~Gk 573 (608)
T KOG4212|consen 534 RKACQIIIRNLPFD-FTWQMLRDKFREIGHVLYADIMENGK 573 (608)
T ss_pred ccccEEEEecCCcc-ccHHHHHHHHHhccceehhhhhccCC
Confidence 34678999999986 99999999999999999988754444
No 102
>KOG0110|consensus
Probab=46.18 E-value=20 Score=35.12 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=33.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
.+.+-|.+.++|-. ...+++...|..||.|..|-|++.|.
T Consensus 383 rs~~vil~kNlpa~-t~~~elt~~F~~fG~i~rvllp~~G~ 422 (725)
T KOG0110|consen 383 RSDTVILVKNLPAG-TLSEELTEAFLRFGEIGRVLLPPGGT 422 (725)
T ss_pred hhcceeeeccCccc-cccHHHHHHhhcccccceeecCcccc
Confidence 44567889999975 78899999999999999998885554
No 103
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.42 E-value=16 Score=24.99 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=14.5
Q ss_pred HHHHHHHhccCCcccEEE
Q psy9843 139 IELVAEMFKPCGEIALIR 156 (175)
Q Consensus 139 ~e~i~~~F~~~G~V~~Vr 156 (175)
+++|+++|+..|.|..+=
T Consensus 8 ~~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHHhcCcEEEEE
Confidence 568999999999875443
No 104
>KOG4661|consensus
Probab=45.17 E-value=19 Score=34.93 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=27.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
.|.+.|.|+... +-.-+|+++|++||+|+-..+.-
T Consensus 405 gRNlWVSGLSst-TRAtDLKnlFSKyGKVvGAKVVT 439 (940)
T KOG4661|consen 405 GRNLWVSGLSST-TRATDLKNLFSKYGKVVGAKVVT 439 (940)
T ss_pred ccceeeeccccc-hhhhHHHHHHHHhcceeceeeee
Confidence 478889999743 44669999999999998776653
No 105
>KOG4212|consensus
Probab=44.37 E-value=30 Score=32.58 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhcc-CCcccEEEeeCCCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKP-CGEIALIRLLRPGKY 163 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~-~G~V~~Vrl~r~~~~ 163 (175)
..|+|||.++|-+ +..++|+.+|.. .|+|++|.+.-+-..
T Consensus 43 r~R~vfItNIpyd-~rWqdLKdLvrekvGev~yveLl~D~~G 83 (608)
T KOG4212|consen 43 RDRSVFITNIPYD-YRWQDLKDLVREKVGEVEYVELLFDESG 83 (608)
T ss_pred ccceEEEecCcch-hhhHhHHHHHHHhcCceEeeeeecccCC
Confidence 4589999999986 899999999986 789999998765433
No 106
>KOG1190|consensus
Probab=44.27 E-value=29 Score=32.32 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=33.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
..+.+.++-++..|.|.|--+|+-||.|..|.|.+.+.
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 46778899888899999999999999999999998655
No 107
>KOG2891|consensus
Probab=43.80 E-value=16 Score=32.51 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=36.2
Q ss_pred CceEEEecCCCCC-----------CCHHHHHHHhccCCcccEEE--eeCCCC-----CCCCCCCccCCCC
Q psy9843 124 SRTIVAINIPPES-----------ATIELVAEMFKPCGEIALIR--LLRPGK-----YTKYGNTRHFSFG 175 (175)
Q Consensus 124 ~rtv~v~~~p~~~-----------~t~e~i~~~F~~~G~V~~Vr--l~r~~~-----~~p~~~~~~~~~~ 175 (175)
.-|||..++|-.+ ++.+-+...|..||.|.+|- ||.|-+ +++=-...+|.||
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g 218 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFG 218 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccC
Confidence 3599999998543 45678999999999998877 444422 3331236778777
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=40.34 E-value=24 Score=32.22 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred CceEEEecCCCCCCCHH-----HHHHHhccCCcccEEEeeCC
Q psy9843 124 SRTIVAINIPPESATIE-----LVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e-----~i~~~F~~~G~V~~Vrl~r~ 160 (175)
.--|||.|+|+.-+..+ .=.++|++||+|..|-+-+.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk 155 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK 155 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccc
Confidence 34689999998633222 23579999999999888753
No 109
>KOG0151|consensus
Probab=40.32 E-value=42 Score=33.30 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=43.4
Q ss_pred ecCcEEEeCCCCCCCC----------C-CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 104 EQGTKIRRVDPLPAYD----------Q-TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 104 edg~~VRR~~plp~~~----------~-~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.|....+|-.|+|..- . +.....+|+-++++. ++-+.+-..|+.||+|+.|++.-|-
T Consensus 143 ~d~~~s~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnps-v~E~~ll~tfGrfgPlasvKimwpR 210 (877)
T KOG0151|consen 143 SDSAVSSRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPS-VDENFLLRTFGRFGPLASVKIMWPR 210 (877)
T ss_pred cCcchhhccCCCccccCCCCCCCcCCCCCCcccceeeecCCcc-ccHHHHHHHhcccCcccceeeeccc
Confidence 3445677777777531 1 233467999999985 8999999999999999999987653
No 110
>KOG3152|consensus
Probab=36.33 E-value=40 Score=29.40 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
-||+..+|+. +...-++++|+.||.|=.|=+-.+
T Consensus 76 VvylS~IPp~-m~~~rlReil~~yGeVGRvylqpE 109 (278)
T KOG3152|consen 76 VVYLSNIPPY-MDPVRLREILSQYGEVGRVYLQPE 109 (278)
T ss_pred EEEeccCCCc-cCHHHHHHHHHhccccceEEecch
Confidence 6899999985 999999999999999987776543
No 111
>KOG4210|consensus
Probab=35.71 E-value=30 Score=30.13 Aligned_cols=36 Identities=36% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCceEE-EecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIV-AINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~-v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...+++ +.+++- .++.++|...|..+|.|..||++-
T Consensus 183 ~s~~~~~~~~~~f-~~~~d~~~~~~~~~~~i~~~r~~~ 219 (285)
T KOG4210|consen 183 PSDTIFFVGELDF-SLTRDDLKEHFVSSGEITSVRLPT 219 (285)
T ss_pred ccccceeeccccc-ccchHHHhhhccCcCcceeeccCC
Confidence 345777 888886 489999999999999999999764
No 112
>KOG1995|consensus
Probab=34.35 E-value=27 Score=31.54 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.2
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCccc
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIA 153 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~ 153 (175)
.-||+|+++|. ..+.+.|.++|.++|.|.
T Consensus 66 ~~ti~v~g~~d-~~~~~~~~~~f~qcg~ik 94 (351)
T KOG1995|consen 66 NETIFVWGCPD-SVCENDNADFFLQCGVIK 94 (351)
T ss_pred cccceeeccCc-cchHHHHHHHHhhcceec
Confidence 45999999996 589999999999999764
No 113
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=34.27 E-value=45 Score=22.66 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=20.0
Q ss_pred eEEEecCCCCCCCHHHHHHHhccC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPC 149 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~ 149 (175)
.|++.|+. .++-++|+++|+.|
T Consensus 7 avhirGvd--~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 7 AVHIRGVD--ELSTDDIKAYFSEY 28 (62)
T ss_pred eEEEEcCC--CCCHHHHHHHHHHh
Confidence 69999985 59999999999999
No 114
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=32.35 E-value=67 Score=27.07 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred ccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCc--eEEeecCcEEEeCC
Q psy9843 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEK--LQINEQGTKIRRVD 113 (175)
Q Consensus 62 ~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~--lev~edg~~VRR~~ 113 (175)
..+.+||++|+.++.-.|-.---.+.+.|..+++.++. .++++ .+||-+.
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~Rf~l~~--~~IRA~y 104 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKE--GKIRARY 104 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCceeEecc--cceeecc
Confidence 34789999999998886665444578888888888775 77775 5888653
No 115
>KOG0129|consensus
Probab=31.21 E-value=55 Score=31.06 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhc-cCCcccEEEeeCC-CCCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFK-PCGEIALIRLLRP-GKYTK 165 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~-~~G~V~~Vrl~r~-~~~~p 165 (175)
..|||.|=++|.- ++-++|..+|+ -||.|.+|-|-=+ .-+-|
T Consensus 369 prrTVFVGgvprp-l~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 369 PRRTVFVGGLPRP-LTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred ccceEEecCCCCc-chHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 4589999999975 89999999999 6999999998654 33444
No 116
>KOG0146|consensus
Probab=29.54 E-value=60 Score=28.82 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
.+.+.++|.-+|.| ..-.||..+|-+||.|.+..+-
T Consensus 283 PeGCNlFIYHLPQE-FgDaEliQmF~PFGhivSaKVF 318 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQE-FGDAELIQMFLPFGHIVSAKVF 318 (371)
T ss_pred CCcceEEEEeCchh-hccHHHHHHhccccceeeeeee
Confidence 35688999999986 8889999999999999887743
No 117
>KOG0147|consensus
Probab=27.95 E-value=13 Score=35.28 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
+.+.|||.+..+... .+.-+|.+||+.+|+|--||+...
T Consensus 176 ERd~Rtvf~~qla~r-~~pRdL~efFs~~gkVrdVriI~D 214 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARR-NPPRDLEEFFSIVGKVRDVRIIGD 214 (549)
T ss_pred HHhHHHHHHHHHhhc-CCchhHHHHHHhhcCcceeEeecc
Confidence 456789998888754 677799999999999999997753
No 118
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.73 E-value=1.6e+02 Score=21.39 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCceEEeecCcEEE-eCCCCCCCC-------CCCCCceEEEecCCCCCCCHHHHHHHhc
Q psy9843 88 RVVAFALAKSEKLQINEQGTKIR-RVDPLPAYD-------QTTPSRTIVAINIPPESATIELVAEMFK 147 (175)
Q Consensus 88 ~~i~~Al~~S~~lev~edg~~VR-R~~plp~~~-------~~~~~rtv~v~~~p~~~~t~e~i~~~F~ 147 (175)
+.|++-|-.-..-.|.-++..++ +..|+.... ...+.|||.+.|+|. ....|+++....
T Consensus 8 ~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~-~l~ee~l~D~Le 74 (88)
T PF07292_consen 8 EGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPD-VLDEEELRDKLE 74 (88)
T ss_pred HHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCC-CCChhhheeeEE
Confidence 44555555555444443444444 334544332 145789999999997 578888776443
No 119
>KOG1457|consensus
Probab=27.15 E-value=99 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=28.0
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCc--ccEEEeeCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGE--IALIRLLRPG 161 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~--V~~Vrl~r~~ 161 (175)
-||++|.|+|.+ +..-||-.+|..|-- -..+++--.+
T Consensus 34 VRTLFVSGLP~D-vKpREiynLFR~f~GYEgslLK~Tsk~ 72 (284)
T KOG1457|consen 34 VRTLFVSGLPND-VKPREIYNLFRRFHGYEGSLLKYTSKG 72 (284)
T ss_pred cceeeeccCCcc-cCHHHHHHHhccCCCccceeeeeccCC
Confidence 599999999975 899999999999743 3445544333
No 120
>KOG4211|consensus
Probab=26.94 E-value=85 Score=29.72 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=29.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYT 164 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~ 164 (175)
..-|-+.++|=. +|.++|..||+.++ |.++-+.|. |++.
T Consensus 10 ~~~vr~rGLPws-at~~ei~~Ff~~~~-I~~~~~~r~~Gr~s 49 (510)
T KOG4211|consen 10 AFEVRLRGLPWS-ATEKEILDFFSNCG-IENLEIPRRNGRPS 49 (510)
T ss_pred ceEEEecCCCcc-ccHHHHHHHHhcCc-eeEEEEeccCCCcC
Confidence 346788999964 89999999999998 555665554 6643
No 121
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=25.35 E-value=57 Score=22.93 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=26.4
Q ss_pred hhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHh
Q psy9843 44 FYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALA 95 (175)
Q Consensus 44 fYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~ 95 (175)
+|+|++.+..=.-....+..+.+|++....+..+=| .+..+.+.+.+.++
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~--~~~~~~~ev~~i~~ 51 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILL--KSGLPQTLLAKIWN 51 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHH--HcCCCHHHHHHHHH
Confidence 344444333222233455556789998887776632 23334455555444
No 122
>PHA02672 ORF110 EEV glycoprotein; Provisional
Probab=24.55 E-value=25 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.0
Q ss_pred cchHHHHhhccCCCCceeHHHHhcchhhhhhcCC
Q psy9843 53 KDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86 (175)
Q Consensus 53 ~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d 86 (175)
+|.||.+-. .+||||++.++=.+-=-+++.+
T Consensus 42 k~~f~~~AC---~~GWvp~dd~CyLnT~~q~s~~ 72 (166)
T PHA02672 42 TDFFLKEAC---ENGWVPIKDLCVLNTHVITNVT 72 (166)
T ss_pred hhhhhhhhh---hcCCeeccCEEEEecceeeccc
Confidence 577887766 6899999998887655555444
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=23.30 E-value=1.4e+02 Score=21.91 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=23.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccC--CcccEEEee
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPC--GEIALIRLL 158 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~--G~V~~Vrl~ 158 (175)
.||-++++|.. .|.+.|.+++... |..-.+=||
T Consensus 2 TTvMirNIPn~-~t~~~L~~~l~~~~~g~yDF~YLP 36 (97)
T PF04059_consen 2 TTVMIRNIPNK-YTQEMLIQILDEHFKGKYDFFYLP 36 (97)
T ss_pred eeEEEecCCCC-CCHHHHHHHHHHhccCcceEEEee
Confidence 38999999975 8988888877763 554444444
No 124
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=22.27 E-value=82 Score=25.49 Aligned_cols=46 Identities=20% Similarity=0.464 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHhhhhhhccCCC-CCcchHHHHhhccCCCCce--eHHHHh
Q psy9843 28 VKPDEDLTKRIIDQVEFYFSDEN-IVKDAFLLKHVKRNKEGFV--SLKLIS 75 (175)
Q Consensus 28 ~~~~e~l~~~I~~QvEfYFSd~N-L~~D~fL~~~~~~~~~g~V--pl~~i~ 75 (175)
....+.+.+.+..|+...+.+.. ..-=.||-..+ +.+||+ ++..++
T Consensus 11 ~~~~~sL~e~L~~Ql~~~~l~~~~~~ia~~lI~~L--D~~GyL~~~~~eia 59 (194)
T PF04963_consen 11 IAAEESLYEHLLEQLNLSPLSEEEREIAEYLIDNL--DDDGYLTESLEEIA 59 (194)
T ss_dssp --------HHHHHHHHHH---TCCHHHHHHHCCCB--TTTSTCSS-HHHHH
T ss_pred cccccCHHHHHHHHHcCcccCHHHHHHHHHHHHcC--CCCCccCCCHHHHH
Confidence 34567788999999988654432 22233444444 678997 455554
No 125
>KOG4285|consensus
Probab=21.59 E-value=99 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=28.2
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~ 162 (175)
-=|-|-|||+- ...-|...|+.||.|+..-+.+.|.
T Consensus 198 ~WVTVfGFppg--~~s~vL~~F~~cG~Vvkhv~~~ngN 233 (350)
T KOG4285|consen 198 TWVTVFGFPPG--QVSIVLNLFSRCGEVVKHVTPSNGN 233 (350)
T ss_pred ceEEEeccCcc--chhHHHHHHHhhCeeeeeecCCCCc
Confidence 45778899974 5667999999999998887776554
No 126
>KOG4676|consensus
Probab=21.07 E-value=25 Score=32.58 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=33.6
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
||++|..|+.+ +-+.++-+.|..+|.|.+.++.-.....|
T Consensus 152 Rt~~v~sl~~~-~~l~e~~e~f~r~Gev~ya~~ask~~s~~ 191 (479)
T KOG4676|consen 152 RTREVQSLISA-AILPESGESFERKGEVSYAHTASKSRSSS 191 (479)
T ss_pred hhhhhhcchhh-hcchhhhhhhhhcchhhhhhhhccCCCcc
Confidence 89999999975 88999999999999999988876544444
Done!