Query psy9843
Match_columns 175
No_of_seqs 138 out of 658
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 3.1E-37 1.1E-41 248.5 11.4 141 28-174 6-154 (193)
2 1s29_A LA protein; winged heli 100.0 9.6E-37 3.3E-41 222.4 9.1 90 27-116 3-92 (92)
3 2cqk_A C-MPL binding protein; 100.0 4.9E-34 1.7E-38 211.2 8.1 89 29-119 9-97 (101)
4 1s79_A Lupus LA protein; RRM, 98.5 1.5E-07 5.2E-12 67.9 5.4 49 121-174 8-56 (103)
5 2lxi_A RNA-binding protein 10; 98.2 6.3E-07 2.2E-11 62.8 2.4 45 125-174 2-48 (91)
6 2dnh_A Bruno-like 5, RNA bindi 98.2 3E-06 1E-10 59.8 5.8 48 122-174 13-60 (105)
7 2do4_A Squamous cell carcinoma 98.1 3E-06 1E-10 59.4 5.4 49 121-174 14-62 (100)
8 1wf0_A TDP-43, TAR DNA-binding 98.1 3.3E-06 1.1E-10 58.0 5.5 43 123-174 4-46 (88)
9 3s7r_A Heterogeneous nuclear r 98.1 3E-06 1E-10 57.8 5.1 48 122-174 9-57 (87)
10 2ywk_A Putative RNA-binding pr 98.1 2.1E-06 7.1E-11 59.4 4.3 48 122-174 14-61 (95)
11 2cq3_A RNA-binding protein 9; 98.1 5.6E-06 1.9E-10 58.3 6.5 47 122-174 13-59 (103)
12 1whw_A Hypothetical protein ri 98.1 3.6E-06 1.2E-10 58.8 5.2 48 122-174 6-54 (99)
13 2rs2_A Musashi-1, RNA-binding 98.1 5.1E-06 1.7E-10 59.8 5.3 48 122-174 23-71 (109)
14 3r27_A HnRNP L, heterogeneous 98.1 4.9E-06 1.7E-10 60.6 5.2 37 122-159 19-55 (100)
15 4fxv_A ELAV-like protein 1; RN 98.1 3.6E-06 1.2E-10 59.9 4.4 47 123-174 18-65 (99)
16 2lkz_A RNA-binding protein 5; 98.1 3.6E-06 1.2E-10 60.0 4.4 46 124-174 9-57 (95)
17 3mdf_A Peptidyl-prolyl CIS-tra 98.1 2.7E-06 9.1E-11 57.6 3.6 48 122-174 5-53 (85)
18 2e5h_A Zinc finger CCHC-type a 98.1 7.4E-06 2.5E-10 56.5 5.8 48 122-174 14-62 (94)
19 2err_A Ataxin-2-binding protei 98.0 6.2E-06 2.1E-10 59.2 5.6 47 122-174 27-73 (109)
20 2cpy_A RNA-binding protein 12; 98.0 7.7E-06 2.6E-10 59.1 6.1 48 122-174 13-61 (114)
21 3ucg_A Polyadenylate-binding p 98.0 4.8E-06 1.6E-10 56.8 4.7 47 123-174 5-52 (89)
22 2fy1_A RNA-binding motif prote 98.0 6.6E-06 2.3E-10 59.9 5.7 48 122-174 5-52 (116)
23 1uaw_A Mouse-musashi-1; RNP-ty 98.0 4E-06 1.4E-10 55.7 4.1 45 125-174 1-46 (77)
24 1x4e_A RNA binding motif, sing 98.0 6.6E-06 2.3E-10 55.8 5.2 47 123-174 4-51 (85)
25 2dgs_A DAZ-associated protein 98.0 1.2E-05 4E-10 56.2 6.5 48 122-174 8-56 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 98.0 5.9E-06 2E-10 62.6 5.2 48 122-174 37-85 (156)
27 3bs9_A Nucleolysin TIA-1 isofo 98.0 4.4E-06 1.5E-10 56.7 4.1 47 123-174 5-52 (87)
28 2cqi_A Nucleolysin TIAR; RNA r 98.0 5.8E-06 2E-10 58.2 4.8 47 122-174 13-59 (103)
29 3d2w_A TAR DNA-binding protein 98.0 5.3E-06 1.8E-10 57.8 4.5 44 122-174 9-52 (89)
30 2cph_A RNA binding motif prote 98.0 7.5E-06 2.6E-10 57.7 5.4 48 122-174 13-62 (107)
31 2cqd_A RNA-binding region cont 98.0 1E-05 3.5E-10 58.2 6.2 49 121-174 14-63 (116)
32 2xs2_A Deleted in azoospermia- 98.0 4.2E-06 1.4E-10 58.8 4.0 48 122-174 7-54 (102)
33 1x5u_A Splicing factor 3B subu 98.0 1E-05 3.4E-10 57.0 5.9 48 122-174 13-61 (105)
34 1x4a_A Splicing factor, argini 98.0 9.2E-06 3.2E-10 57.8 5.8 46 122-174 20-65 (109)
35 3s8s_A Histone-lysine N-methyl 98.0 5.6E-06 1.9E-10 60.1 4.6 47 123-174 5-52 (110)
36 2dnz_A Probable RNA-binding pr 98.0 9.4E-06 3.2E-10 56.0 5.6 47 123-174 4-51 (95)
37 2cq1_A PTB-like protein L; RRM 98.0 6.2E-06 2.1E-10 59.4 4.7 42 123-174 14-55 (101)
38 2cq4_A RNA binding motif prote 98.0 9E-06 3.1E-10 58.3 5.6 47 123-174 24-71 (114)
39 1x4h_A RNA-binding protein 28; 98.0 9.8E-06 3.4E-10 57.5 5.7 49 122-174 13-61 (111)
40 2d9p_A Polyadenylate-binding p 98.0 6.9E-06 2.3E-10 57.8 4.7 47 122-174 13-59 (103)
41 1x5t_A Splicing factor 3B subu 98.0 6.3E-06 2.2E-10 57.1 4.4 47 123-174 4-52 (96)
42 2dgp_A Bruno-like 4, RNA bindi 98.0 6.3E-06 2.2E-10 58.2 4.5 48 122-174 11-59 (106)
43 2x1f_A MRNA 3'-END-processing 98.0 8.1E-06 2.8E-10 56.8 5.0 46 124-174 2-48 (96)
44 1sjq_A Polypyrimidine tract-bi 98.0 4.7E-06 1.6E-10 61.1 3.8 42 123-174 15-56 (105)
45 2krb_A Eukaryotic translation 98.0 4.7E-06 1.6E-10 56.4 3.6 44 125-174 2-51 (81)
46 2do0_A HnRNP M, heterogeneous 98.0 7.2E-06 2.5E-10 58.6 4.6 48 122-174 13-60 (114)
47 1p27_B RNA-binding protein 8A; 98.0 7.3E-06 2.5E-10 57.8 4.6 48 122-174 21-69 (106)
48 3lqv_A PRE-mRNA branch site pr 98.0 1.2E-05 4E-10 57.7 5.8 45 123-174 7-51 (115)
49 2khc_A Testis-specific RNP-typ 98.0 1.6E-05 5.6E-10 57.2 6.6 48 122-174 38-86 (118)
50 2dnm_A SRP46 splicing factor; 98.0 1.2E-05 4E-10 56.6 5.6 48 122-174 11-59 (103)
51 1x5o_A RNA binding motif, sing 98.0 7.5E-06 2.6E-10 58.6 4.6 48 122-174 23-70 (114)
52 2cqb_A Peptidyl-prolyl CIS-tra 98.0 8.6E-06 2.9E-10 57.1 4.7 48 122-174 10-58 (102)
53 1wex_A Hypothetical protein (r 98.0 8.7E-06 3E-10 58.9 4.9 37 122-159 13-49 (104)
54 3ulh_A THO complex subunit 4; 97.9 6.8E-06 2.3E-10 58.1 4.1 48 122-174 27-74 (107)
55 2ad9_A Polypyrimidine tract-bi 97.9 7.4E-06 2.5E-10 61.2 4.5 42 123-174 30-71 (119)
56 1x5s_A Cold-inducible RNA-bind 97.9 9.6E-06 3.3E-10 56.8 4.8 48 122-174 10-58 (102)
57 2dgo_A Cytotoxic granule-assoc 97.9 1E-05 3.5E-10 58.0 5.1 48 122-174 13-61 (115)
58 2cqg_A TDP-43, TAR DNA-binding 97.9 7.8E-06 2.7E-10 57.5 4.2 48 122-174 13-61 (103)
59 1wg5_A Heterogeneous nuclear r 97.9 1.4E-05 4.9E-10 56.8 5.7 48 122-174 13-61 (104)
60 3md1_A Nuclear and cytoplasmic 97.9 8.5E-06 2.9E-10 54.8 4.2 45 125-174 2-47 (83)
61 1oo0_B CG8781-PA, drosophila Y 97.9 1.3E-05 4.4E-10 57.0 5.4 48 122-174 24-72 (110)
62 1wi8_A EIF-4B, eukaryotic tran 97.9 1.7E-05 5.9E-10 55.9 6.0 47 122-174 13-61 (104)
63 3ex7_B RNA-binding protein 8A; 97.9 1.4E-05 4.9E-10 58.1 5.7 48 122-174 20-68 (126)
64 2cpj_A Non-POU domain-containi 97.9 2E-05 6.7E-10 55.1 6.0 38 122-160 13-50 (99)
65 3nmr_A Cugbp ELAV-like family 97.9 6E-06 2.1E-10 61.8 3.5 48 122-174 93-140 (175)
66 1x4b_A Heterogeneous nuclear r 97.9 1.6E-05 5.4E-10 57.2 5.5 47 123-174 26-73 (116)
67 2dgv_A HnRNP M, heterogeneous 97.9 8.1E-06 2.8E-10 56.1 3.8 47 122-174 6-52 (92)
68 2cqc_A Arginine/serine-rich sp 97.9 1.1E-05 3.9E-10 55.5 4.6 48 122-174 13-61 (95)
69 4f25_A Polyadenylate-binding p 97.9 5.6E-06 1.9E-10 60.1 3.0 45 124-174 5-49 (115)
70 1b7f_A Protein (SXL-lethal pro 97.9 3.1E-05 1.1E-09 57.7 7.2 81 86-174 54-135 (168)
71 2mss_A Protein (musashi1); RNA 97.9 8.1E-06 2.8E-10 54.1 3.6 44 126-174 1-45 (75)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 1.4E-05 4.9E-10 58.6 5.3 48 122-174 61-109 (140)
73 2cq0_A Eukaryotic translation 97.9 8.9E-06 3E-10 57.2 3.9 48 122-174 13-61 (103)
74 1iqt_A AUF1, heterogeneous nuc 97.9 6.3E-06 2.1E-10 54.5 2.9 44 126-174 1-45 (75)
75 3md3_A Nuclear and cytoplasmic 97.9 4E-05 1.4E-09 56.7 7.7 83 86-174 50-133 (166)
76 2cpz_A CUG triplet repeat RNA- 97.9 1.3E-05 4.4E-10 57.5 4.8 48 122-174 23-71 (115)
77 2kxn_B Transformer-2 protein h 97.9 1.8E-05 6.1E-10 58.9 5.7 48 122-174 44-92 (129)
78 2kt5_A RNA and export factor-b 97.9 1.5E-05 5.2E-10 58.0 5.2 47 123-174 34-80 (124)
79 2ki2_A SS-DNA binding protein 97.9 3.9E-06 1.3E-10 57.6 1.9 45 125-174 2-47 (90)
80 2dh8_A DAZ-associated protein 97.9 6.7E-06 2.3E-10 58.0 3.0 48 122-174 14-62 (105)
81 2jrs_A RNA-binding protein 39; 97.9 1.2E-05 4.1E-10 57.8 4.4 48 122-174 24-72 (108)
82 2j76_E EIF-4B, EIF4B, eukaryot 97.9 8.7E-06 3E-10 57.4 3.3 47 122-174 17-65 (100)
83 2cpe_A RNA-binding protein EWS 97.9 2.4E-05 8.3E-10 55.8 5.8 48 122-174 13-69 (113)
84 2la6_A RNA-binding protein FUS 97.9 2.7E-05 9.1E-10 54.4 5.9 48 122-174 11-67 (99)
85 3ns6_A Eukaryotic translation 97.9 3.2E-06 1.1E-10 59.9 1.0 47 123-174 5-58 (100)
86 2dhg_A TRNA selenocysteine ass 97.8 1.2E-05 4.2E-10 56.5 4.0 48 122-174 7-55 (104)
87 1x4d_A Matrin 3; structural ge 97.8 1E-05 3.5E-10 58.7 3.6 37 123-159 14-50 (102)
88 2dnl_A Cytoplasmic polyadenyla 97.8 1.6E-05 5.3E-10 57.5 4.6 51 122-174 6-56 (114)
89 2ytc_A PRE-mRNA-splicing facto 97.8 1.6E-05 5.4E-10 53.8 4.2 37 122-159 10-46 (85)
90 1l3k_A Heterogeneous nuclear r 97.8 5.1E-05 1.7E-09 58.0 7.5 84 85-174 63-150 (196)
91 4a8x_A RNA-binding protein wit 97.8 1E-05 3.5E-10 54.9 3.1 38 123-161 3-40 (88)
92 2div_A TRNA selenocysteine ass 97.8 1.6E-05 5.6E-10 55.3 4.2 48 122-174 7-56 (99)
93 2db1_A Heterogeneous nuclear r 97.8 1.4E-05 4.9E-10 58.3 4.0 48 122-174 15-65 (118)
94 2m2b_A RNA-binding protein 10; 97.8 1.3E-05 4.3E-10 59.3 3.7 48 122-174 21-71 (131)
95 2g4b_A Splicing factor U2AF 65 97.8 4E-05 1.4E-09 57.4 6.5 81 85-174 59-140 (172)
96 2nlw_A Eukaryotic translation 97.8 2.1E-05 7E-10 56.0 4.7 46 123-174 14-65 (105)
97 2jwn_A Embryonic polyadenylate 97.8 1E-05 3.6E-10 58.7 3.1 47 123-174 35-82 (124)
98 2lmi_A GRSF-1, G-rich sequence 97.8 2.5E-05 8.7E-10 55.7 4.8 48 122-174 9-59 (107)
99 2cpf_A RNA binding motif prote 97.8 1.1E-05 3.6E-10 56.2 2.6 37 123-160 4-40 (98)
100 1why_A Hypothetical protein ri 97.8 3.5E-05 1.2E-09 53.7 5.3 37 122-159 15-51 (97)
101 1p1t_A Cleavage stimulation fa 97.8 1.2E-05 3.9E-10 56.5 2.8 47 123-174 7-54 (104)
102 1x4g_A Nucleolysin TIAR; struc 97.8 1.9E-05 6.6E-10 56.2 4.1 38 122-160 23-60 (109)
103 1wez_A HnRNP H', FTP-3, hetero 97.8 2.4E-05 8.1E-10 55.9 4.4 47 122-174 13-59 (102)
104 2hvz_A Splicing factor, argini 97.7 1.9E-05 6.6E-10 55.2 3.7 41 125-174 1-41 (101)
105 1whx_A Hypothetical protein ri 97.7 2.5E-05 8.6E-10 56.4 4.4 36 123-159 9-44 (111)
106 4f02_A Polyadenylate-binding p 97.7 2.3E-05 8E-10 62.0 4.4 48 122-174 13-61 (213)
107 2dnq_A RNA-binding protein 4B; 97.7 3.2E-05 1.1E-09 53.1 4.6 36 122-158 6-41 (90)
108 1fxl_A Paraneoplastic encephal 97.7 5.5E-05 1.9E-09 55.9 6.2 81 86-174 53-134 (167)
109 2dis_A Unnamed protein product 97.7 2.8E-05 9.7E-10 55.0 4.4 48 122-174 6-56 (109)
110 1u6f_A Tcubp1, RNA-binding pro 97.7 2.2E-05 7.5E-10 58.1 3.6 49 122-174 40-88 (139)
111 2dgw_A Probable RNA-binding pr 97.7 4.3E-05 1.5E-09 52.4 4.8 47 122-174 8-54 (91)
112 2dgx_A KIAA0430 protein; RRM d 97.7 3.6E-05 1.2E-09 53.8 4.4 45 123-174 8-56 (96)
113 2lea_A Serine/arginine-rich sp 97.7 3.3E-05 1.1E-09 57.7 4.3 48 122-174 45-93 (135)
114 1x4f_A Matrin 3; structural ge 97.7 2.6E-05 8.9E-10 57.6 3.7 37 123-159 24-60 (112)
115 2jvo_A Nucleolar protein 3; nu 97.7 4.1E-05 1.4E-09 55.0 4.6 37 121-158 28-64 (108)
116 1l3k_A Heterogeneous nuclear r 97.7 3.1E-05 1.1E-09 59.2 4.2 48 122-174 11-59 (196)
117 3smz_A Protein raver-1, ribonu 97.7 8.4E-05 2.9E-09 60.6 6.9 85 86-174 146-230 (284)
118 1rk8_A CG8781-PA, CG8781-PA pr 97.7 4.2E-05 1.4E-09 58.6 4.8 48 122-174 70-118 (165)
119 2dng_A Eukaryotic translation 97.7 5.4E-05 1.8E-09 53.2 4.9 47 122-174 13-60 (103)
120 2kvi_A Nuclear polyadenylated 97.7 5E-05 1.7E-09 52.9 4.7 37 122-158 8-44 (96)
121 3p5t_L Cleavage and polyadenyl 97.7 2.5E-05 8.5E-10 53.9 3.0 45 125-174 2-49 (90)
122 2hgn_A Heterogeneous nuclear r 97.7 4.3E-05 1.5E-09 58.2 4.6 47 122-174 44-90 (139)
123 2qfj_A FBP-interacting repress 97.6 4.9E-05 1.7E-09 58.9 4.9 47 123-174 27-74 (216)
124 2xnq_A Nuclear polyadenylated 97.6 6E-05 2E-09 53.0 4.8 37 122-158 20-56 (97)
125 2hgl_A HNRPF protein, heteroge 97.6 4.1E-05 1.4E-09 58.0 4.1 48 122-174 42-92 (136)
126 2la4_A Nuclear and cytoplasmic 97.6 6.9E-05 2.3E-09 52.4 4.9 36 123-159 26-61 (101)
127 2cpi_A CCR4-NOT transcription 97.6 3.4E-05 1.2E-09 55.4 3.4 51 122-174 13-67 (111)
128 2i2y_A Fusion protein consists 97.6 3.3E-05 1.1E-09 58.0 3.2 44 122-174 71-114 (150)
129 1wf1_A RNA-binding protein RAL 97.6 6.4E-05 2.2E-09 53.5 4.6 36 122-157 25-60 (110)
130 2kn4_A Immunoglobulin G-bindin 97.6 6.5E-05 2.2E-09 56.5 4.8 48 122-174 68-116 (158)
131 2ek1_A RNA-binding protein 12; 97.6 2.6E-05 8.9E-10 53.8 2.3 47 123-174 14-61 (95)
132 2f3j_A RNA and export factor b 97.6 8.1E-05 2.8E-09 58.3 5.3 46 124-174 88-133 (177)
133 2dha_A FLJ20171 protein; RRM d 97.6 3.9E-05 1.3E-09 57.2 3.3 47 123-174 22-72 (123)
134 2yh0_A Splicing factor U2AF 65 97.6 0.00016 5.3E-09 55.3 6.6 47 123-174 113-160 (198)
135 1wel_A RNA-binding protein 12; 97.6 7.3E-05 2.5E-09 54.5 4.4 48 122-174 23-71 (124)
136 1x4c_A Splicing factor, argini 97.5 9.1E-05 3.1E-09 52.8 4.6 37 123-160 14-50 (108)
137 2fc9_A NCL protein; structure 97.5 9.1E-05 3.1E-09 51.7 4.5 45 122-174 13-57 (101)
138 2dnn_A RNA-binding protein 12; 97.5 0.00011 3.7E-09 53.5 5.0 46 123-174 15-60 (109)
139 2dgu_A Heterogeneous nuclear r 97.5 6.1E-05 2.1E-09 53.0 3.6 36 123-159 10-45 (103)
140 3n9u_C Cleavage and polyadenyl 97.5 7.7E-05 2.6E-09 57.4 4.0 47 123-174 54-103 (156)
141 2cjk_A Nuclear polyadenylated 97.5 7.3E-05 2.5E-09 55.7 3.8 79 86-174 54-133 (167)
142 2ghp_A U4/U6 snRNA-associated 97.5 0.0002 6.8E-09 58.6 6.6 85 86-174 168-258 (292)
143 2hzc_A Splicing factor U2AF 65 97.5 7.7E-05 2.6E-09 50.4 3.4 38 122-160 4-52 (87)
144 2a3j_A U1 small nuclear ribonu 97.5 0.00012 4.2E-09 54.7 4.8 45 123-174 28-76 (127)
145 1nu4_A U1A RNA binding domain; 97.5 4.2E-05 1.4E-09 52.9 2.0 37 122-159 6-46 (97)
146 2cqp_A RNA-binding protein 12; 97.5 5E-05 1.7E-09 52.7 2.3 47 123-174 14-61 (98)
147 2dgt_A RNA-binding protein 30; 97.4 0.00022 7.6E-09 49.0 5.5 37 122-159 8-44 (92)
148 2j8a_A Histone-lysine N-methyl 97.4 0.00011 3.7E-09 56.5 4.1 45 125-174 3-52 (136)
149 2lcw_A RNA-binding protein FUS 96.6 2E-05 7E-10 56.7 0.0 48 122-174 5-61 (116)
150 2cpd_A Apobec-1 stimulating pr 97.4 0.00021 7.3E-09 49.7 5.2 37 122-159 13-51 (99)
151 2dnp_A RNA-binding protein 14; 97.4 0.00019 6.5E-09 49.1 4.7 37 122-159 7-43 (90)
152 2hgm_A HNRPF protein, heteroge 97.4 0.0002 7E-09 53.6 5.0 46 123-174 41-88 (126)
153 2cpx_A Hypothetical protein FL 97.4 0.00017 5.9E-09 51.3 4.4 45 122-174 23-71 (115)
154 3sde_A Paraspeckle component 1 97.4 0.00025 8.5E-09 57.8 5.9 75 86-174 67-141 (261)
155 2bz2_A Negative elongation fac 97.4 0.0002 6.8E-09 52.6 4.7 48 108-158 23-70 (121)
156 2e5j_A Methenyltetrahydrofolat 97.3 0.00018 6.1E-09 50.0 3.8 35 122-158 17-51 (97)
157 2qfj_A FBP-interacting repress 97.3 0.00024 8.1E-09 55.0 4.7 84 86-174 79-171 (216)
158 2adc_A Polypyrimidine tract-bi 97.3 0.00019 6.6E-09 57.2 4.3 40 122-161 32-71 (229)
159 2jvr_A Nucleolar protein 3; RN 97.2 0.00025 8.6E-09 51.8 4.0 44 123-174 27-71 (111)
160 3sde_A Paraspeckle component 1 97.2 0.00037 1.3E-08 56.8 5.4 37 122-159 20-56 (261)
161 3q2s_C Cleavage and polyadenyl 97.2 0.00026 8.7E-09 57.6 4.2 47 123-174 67-116 (229)
162 4f02_A Polyadenylate-binding p 97.2 0.00016 5.5E-09 57.1 2.8 81 86-174 66-147 (213)
163 2ghp_A U4/U6 snRNA-associated 97.2 0.00077 2.6E-08 55.0 6.7 73 86-174 90-163 (292)
164 3beg_B Splicing factor, argini 97.2 0.00019 6.6E-09 51.8 2.7 37 123-160 15-51 (115)
165 1x5p_A Negative elongation fac 97.2 0.00073 2.5E-08 46.8 5.6 34 122-158 13-46 (97)
166 1fje_B Nucleolin RBD12, protei 97.1 0.00098 3.3E-08 50.0 6.7 66 86-155 63-129 (175)
167 2e5g_A U6 snRNA-specific termi 97.1 0.00081 2.8E-08 46.3 5.5 33 123-156 7-39 (94)
168 3egn_A RNA-binding protein 40; 97.1 0.00036 1.2E-08 51.8 3.7 32 122-154 43-74 (143)
169 1fj7_A Nucleolin RBD1, protein 97.1 5.6E-05 1.9E-09 52.8 -0.8 47 122-174 15-62 (101)
170 1fjc_A Nucleolin RBD2, protein 97.1 0.00013 4.5E-09 50.3 1.0 33 122-155 14-46 (96)
171 2cqh_A IGF-II mRNA-binding pro 97.1 0.00023 8E-09 48.9 2.2 36 122-158 6-42 (93)
172 2wbr_A GW182, gawky, LD47780P; 97.0 0.00031 1E-08 50.3 2.8 41 124-174 7-47 (89)
173 1wg1_A KIAA1579 protein, homol 97.0 0.00052 1.8E-08 46.9 3.8 34 123-158 4-37 (88)
174 3pgw_S U1-70K; protein-RNA com 97.0 0.00052 1.8E-08 61.0 4.7 47 123-174 101-148 (437)
175 2cq2_A Hypothetical protein LO 97.0 0.00032 1.1E-08 52.0 2.7 42 123-174 24-67 (114)
176 3smz_A Protein raver-1, ribonu 96.9 0.0017 5.8E-08 52.7 6.8 76 85-174 65-141 (284)
177 2e44_A Insulin-like growth fac 96.9 0.00058 2E-08 47.0 3.3 37 123-160 14-51 (96)
178 3pgw_A U1-A; protein-RNA compl 96.9 0.0012 4.2E-08 53.5 5.4 37 123-160 206-242 (282)
179 3tyt_A Heterogeneous nuclear r 96.7 0.00089 3E-08 53.2 3.4 36 124-160 123-160 (205)
180 1qm9_A Polypyrimidine tract-bi 96.7 0.0015 5.1E-08 50.2 4.6 36 123-159 119-155 (198)
181 2adc_A Polypyrimidine tract-bi 96.7 0.0056 1.9E-07 48.6 7.8 35 124-159 151-186 (229)
182 1sjr_A Polypyrimidine tract-bi 96.6 0.001 3.5E-08 52.3 2.9 35 124-159 46-80 (164)
183 2pe8_A Splicing factor 45; RRM 96.6 0.0024 8.2E-08 45.9 4.7 50 123-174 7-60 (105)
184 3u1l_A PRE-mRNA-splicing facto 96.6 0.00095 3.3E-08 55.3 2.7 43 122-174 132-183 (240)
185 3pgw_A U1-A; protein-RNA compl 96.5 0.0032 1.1E-07 51.0 5.4 40 122-162 7-50 (282)
186 2fc8_A NCL protein; structure 96.5 0.0022 7.5E-08 44.5 3.8 32 122-154 13-44 (102)
187 3zzy_A Polypyrimidine tract-bi 96.5 0.002 6.9E-08 48.7 3.8 34 125-159 29-62 (130)
188 1fje_B Nucleolin RBD12, protei 96.4 0.00035 1.2E-08 52.5 -1.0 48 122-174 11-58 (175)
189 3v4m_A Splicing factor U2AF 65 96.3 0.0031 1.1E-07 45.2 3.8 51 123-174 4-63 (105)
190 2dit_A HIV TAT specific factor 96.2 0.0058 2E-07 43.6 4.8 46 122-174 13-68 (112)
191 2e5i_A Heterogeneous nuclear r 96.0 0.011 3.8E-07 44.0 5.7 33 126-159 27-59 (124)
192 3htx_A HEN1; HEN1, small RNA m 95.9 0.017 5.6E-07 56.2 7.5 88 29-117 102-208 (950)
193 2d9o_A DNAJ (HSP40) homolog, s 95.7 0.0077 2.6E-07 43.1 3.3 31 136-174 28-58 (100)
194 3tht_A Alkylated DNA repair pr 95.6 0.0071 2.4E-07 52.5 3.4 44 122-174 16-60 (345)
195 1owx_A Lupus LA protein, SS-B, 95.1 0.026 9.1E-07 42.1 4.7 39 123-161 17-55 (121)
196 1jmt_A Splicing factor U2AF 35 94.7 0.013 4.6E-07 41.7 2.0 31 140-174 41-72 (104)
197 3s6e_A RNA-binding protein 39; 94.6 0.057 2E-06 39.3 5.3 46 122-174 5-59 (114)
198 3ue2_A Poly(U)-binding-splicin 93.5 0.032 1.1E-06 40.9 2.1 39 123-161 19-61 (118)
199 2diu_A KIAA0430 protein; struc 93.0 0.092 3.2E-06 37.8 3.8 31 124-155 8-44 (96)
200 1wfx_A Probable RNA 2'-phospho 88.2 0.6 2.1E-05 37.1 4.8 49 62-113 23-75 (186)
201 1whv_A Poly(A)-specific ribonu 81.0 2.4 8.1E-05 30.7 4.7 25 127-152 18-42 (100)
202 2dnr_A Synaptojanin-1; RRM dom 80.2 2.2 7.4E-05 30.2 4.2 38 124-161 7-51 (91)
203 3ctr_A Poly(A)-specific ribonu 79.9 1.9 6.6E-05 31.2 3.9 26 126-152 7-32 (101)
204 3dxb_A Thioredoxin N-terminall 72.7 1 3.5E-05 35.1 0.9 37 138-174 142-179 (222)
205 1wwh_A Nucleoporin 35, nucleop 70.9 3.7 0.00013 30.4 3.5 34 122-157 22-55 (119)
206 3pq1_A Poly(A) RNA polymerase; 64.3 3.9 0.00013 36.7 2.9 36 123-160 52-87 (464)
207 1ufw_A Synaptojanin 2; RNP dom 57.4 5 0.00017 28.6 1.9 38 124-161 15-60 (95)
208 2k9l_A RNA polymerase sigma fa 53.5 20 0.00069 23.8 4.4 54 35-95 15-70 (76)
209 2dhx_A Poly (ADP-ribose) polym 40.4 46 0.0016 23.9 4.8 36 123-159 7-47 (104)
210 3p3d_A Nucleoporin 53; structu 36.7 20 0.00067 27.0 2.4 29 124-154 7-35 (132)
211 1uw4_A UPF3X; nonsense mediate 36.5 51 0.0018 22.8 4.4 33 126-159 3-35 (91)
212 2l9w_A U4/U6 snRNA-associated- 32.5 46 0.0016 24.5 3.7 36 123-159 20-60 (117)
213 2k9m_A RNA polymerase sigma fa 24.2 49 0.0017 24.2 2.7 56 33-95 4-61 (130)
214 1ujv_A Membrane associated gua 23.6 78 0.0027 21.0 3.5 41 125-165 53-95 (96)
215 1vb7_A PDZ and LIM domain 2; P 22.2 1.1E+02 0.0037 20.0 4.0 39 127-165 55-93 (94)
216 2he4_A Na(+)/H(+) exchange reg 22.0 1.1E+02 0.0038 19.6 4.0 38 126-163 52-89 (90)
217 1c07_A Protein (epidermal grow 21.4 46 0.0016 22.0 1.9 35 59-95 17-51 (95)
218 2jo7_A Glycosylphosphatidylino 20.7 88 0.003 25.1 3.6 51 32-95 5-59 (224)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=3.1e-37 Score=248.45 Aligned_cols=141 Identities=32% Similarity=0.542 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcC--CceEEeec
Q psy9843 28 VKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS--EKLQINEQ 105 (175)
Q Consensus 28 ~~~~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S--~~lev~ed 105 (175)
..|.+++..+|++||||||||+||++|.||+++|.++ +|||||++|++|+||++|+.|.+.|++||+.| ..|+++++
T Consensus 6 ~~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed 84 (193)
T 2voo_A 6 NEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 84 (193)
T ss_dssp ---CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTT
T ss_pred cCCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecc
Confidence 4577899999999999999999999999999999765 99999999999999999999999999999999 89999999
Q ss_pred CcEEEeCC--CCCCCC----CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 106 GTKIRRVD--PLPAYD----QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 106 g~~VRR~~--plp~~~----~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
|.+|||.. |+|... .....|||||.++|.+ ++.++|+++|++||.|..|+|+++....+ |+|+|
T Consensus 85 ~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~----kG~aF 154 (193)
T 2voo_A 85 KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHKAF----KGSIF 154 (193)
T ss_dssp SSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTT-CCHHHHHHHHTTSCCEEEEEEEECTTCCE----EEEEE
T ss_pred cceEEecccCCCcccchhhhhccccCEEEecCCCCc-CCHHHHHHHHhcCCCEEEEEEEECCCCCc----ccEEE
Confidence 99999984 444431 1234689999999985 89999999999999999999998765444 88887
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=100.00 E-value=9.6e-37 Score=222.42 Aligned_cols=90 Identities=42% Similarity=0.675 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecC
Q psy9843 27 FVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQG 106 (175)
Q Consensus 27 ~~~~~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg 106 (175)
+.++++++.++|++||||||||+||++|.||+++|.+++||||||++|++|+|||+|+.|++.|++||+.|+.|||++||
T Consensus 3 ~~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg 82 (92)
T 1s29_A 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDG 82 (92)
T ss_dssp TSCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTS
T ss_pred CCCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCC
Confidence 44678999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCC
Q psy9843 107 TKIRRVDPLP 116 (175)
Q Consensus 107 ~~VRR~~plp 116 (175)
++|||+.|||
T Consensus 83 ~~VRR~~PlP 92 (92)
T 1s29_A 83 LMVRRRDPLP 92 (92)
T ss_dssp SEEEESSCCC
T ss_pred CEEeCCCCCC
Confidence 9999999997
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=100.00 E-value=4.9e-34 Score=211.25 Aligned_cols=89 Identities=27% Similarity=0.466 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHhcCCceEEeecCcE
Q psy9843 29 KPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTK 108 (175)
Q Consensus 29 ~~~e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~~S~~lev~edg~~ 108 (175)
.+.+++.++|++||||||||+||++|.||+++| +++|||||++|++|+|||+|+.|++.|++||+.|+.|||++||++
T Consensus 9 ~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~k 86 (101)
T 2cqk_A 9 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 86 (101)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSE
T ss_pred CCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCe
Confidence 577999999999999999999999999999999 689999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q psy9843 109 IRRVDPLPAYD 119 (175)
Q Consensus 109 VRR~~plp~~~ 119 (175)
|||+.|+|...
T Consensus 87 VRr~~~~~i~~ 97 (101)
T 2cqk_A 87 VRPSHKRCISG 97 (101)
T ss_dssp EEECCSCCCCS
T ss_pred eeeCCCCCcCC
Confidence 99998877654
No 4
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.5e-07 Score=67.92 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
....|||||.++|.+ +|.++|+++|++||+|..|+|++.....+ |+|+|
T Consensus 8 ~~~~~~lfV~~Lp~~-~te~~L~~~F~~~G~v~~v~i~~d~~g~~----rG~aF 56 (103)
T 1s79_A 8 DVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRRTLHKAF----KGSIF 56 (103)
T ss_dssp CSGGGCEEEECCCTT-CCHHHHHHHHHTSSCEEEEEEECCCTTSC----CCEEE
T ss_pred cCCCCEEEEECCCCC-CCHHHHHHHHhhcCCEEEEEEEECCCCCC----ccEEE
Confidence 356799999999986 99999999999999999999998765555 88887
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.18 E-value=6.3e-07 Score=62.77 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=38.7
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCC-cccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCG-EIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G-~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
++|+|.|+|.+ +|.++|+++|++|| .|..|++.+... ..+ |+|||
T Consensus 2 ~~i~v~nLp~~-~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~----rg~aF 48 (91)
T 2lxi_A 2 NIVMLRMLPQA-ATEDDIRGQLQSHGVQAREVRLMRNKSSGQS----RGFAF 48 (91)
T ss_dssp CEEEEETCCSS-CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCC----SSEEE
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHHhCCEeEEEEEEecCCCCCc----CceEE
Confidence 68999999985 99999999999999 899999987543 444 88887
No 6
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.16 E-value=3e-06 Score=59.79 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|+|.+.....+ |+|+|
T Consensus 13 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 60 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQ-QSEEDVLRLFQPFGVIDECTVLRGPDGSS----KGCAF 60 (105)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECSSSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCc----CcEEE
Confidence 45689999999975 89999999999999999999988654444 77776
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=3e-06 Score=59.39 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=41.1
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
....++|||.++|.. ++.++|+++|++||.|..|++.+.....+ |+|+|
T Consensus 14 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 62 (100)
T 2do4_A 14 SLEKHKLFISGLPFS-CTKEELEEICKAHGTVKDLRLVTNRAGKP----KGLAY 62 (100)
T ss_dssp CCCCSCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTSCE----EEEEE
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEEECCCCCE----EeEEE
Confidence 355789999999975 99999999999999999999988654444 77776
No 8
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=3.3e-06 Score=57.96 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|++.+. + |+|||
T Consensus 4 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~----~----~g~af 46 (88)
T 1wf0_A 4 GSSGVFVGRCTGD-MTEDELREFFSQYGDVMDVFIPKP----F----RAFAF 46 (88)
T ss_dssp CCCEEEEESCCSS-SCHHHHHHHSTTTSCCCEEECCSS----C----CSCCE
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHHcCCeeEEEEecC----C----CCEEE
Confidence 4689999999975 999999999999999999999863 3 77776
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.14 E-value=3e-06 Score=57.84 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.++.. ..+ |+|+|
T Consensus 9 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 57 (87)
T 3s7r_A 9 EDAGKMFVGGLSWD-TSKKDLKDYFTKFGEVVDCTIKMDPNTGRS----RGFGF 57 (87)
T ss_dssp SCTTEEEEECCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEeecCCCCcc----ccEEE
Confidence 45789999999975 89999999999999999999887533 333 77776
No 10
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.13 E-value=2.1e-06 Score=59.44 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=40.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.....+ |+|+|
T Consensus 14 ~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 61 (95)
T 2ywk_A 14 EADRTVFVGNLEAR-VREEILYELFLQAGPLTKVTICKDREGKP----KSFGF 61 (95)
T ss_dssp TGGGEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCE----EEEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCC----ceEEE
Confidence 35689999999975 99999999999999999999988654444 77776
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=5.6e-06 Score=58.29 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=40.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.... + |+|+|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~-~----~g~af 59 (103)
T 2cq3_A 13 STPKRLHVSNIPFR-FRDPDLRQMFGQFGKILDVEIIFNERG-S----KGFGF 59 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHGGGTSCEEEEEEECCTTT-T----CCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCC-C----cEEEE
Confidence 45789999999975 999999999999999999999886443 4 77776
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=3.6e-06 Score=58.76 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=40.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.. ...+ |+|||
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 54 (99)
T 1whw_A 6 SGSGRLFVRNLSYT-SSEEDLEKLFSAYGPLSELHYPIDSLTKKP----KGFAF 54 (99)
T ss_dssp CSCEEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCCCTTTCCC----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEEecCCCCCc----CeEEE
Confidence 45689999999975 9999999999999999999998764 3444 77876
No 13
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.06 E-value=5.1e-06 Score=59.82 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=39.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.|..|++.+... ..+ |+|+|
T Consensus 23 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~----kg~af 71 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQ-TTQEGLREYFGQFGEVKECLVMRDPLTKRS----RGFGF 71 (109)
T ss_dssp ---CCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEECCCTTTCCC----TTCEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHccCCeEEEEEEECCCCCCc----CcEEE
Confidence 45789999999975 99999999999999999999988533 444 88886
No 14
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.06 E-value=4.9e-06 Score=60.55 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
.+.++|||.++|.+ +|.++|+++|++||.|..|++.+
T Consensus 19 ~ps~~l~V~NLp~~-~te~~L~~lF~~fG~V~~v~i~~ 55 (100)
T 3r27_A 19 PASPVVHIRGLIDG-VVEADLVEALQEFGPISYVVVMP 55 (100)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEET
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHhccCCEEEEEEEc
Confidence 45789999999975 89999999999999999999985
No 15
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.06 E-value=3.6e-06 Score=59.91 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...+|||.++|.+ +|.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 18 ~gt~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~----kG~af 65 (99)
T 4fxv_A 18 QGTNLIVNYLPQN-MTQDELRSLFSSIGEVESAKLIRDKVAGHS----LGYGF 65 (99)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEECSSSCCE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEeEeeecCCCCcc----cccEE
Confidence 4568999999985 99999999999999999999987533 334 78876
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.06 E-value=3.6e-06 Score=59.98 Aligned_cols=46 Identities=26% Similarity=0.508 Sum_probs=38.5
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCc--ccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGE--IALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~--V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
-.||||.++|.+ +|.++|+++|++||. |..|++.+.. ...+ |+|+|
T Consensus 9 m~tlfV~nL~~~-~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~s----rG~aF 57 (95)
T 2lkz_A 9 MDTIILRNIAPH-TVVDSIMTALSPYASLAVNNIRLIKDKQTQQN----RGFAF 57 (95)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSC----SSEEE
T ss_pred cCEEEEeCCCCc-CCHHHHHHHHHhhCCccEEEEEEEecCCCCCC----ceEeE
Confidence 359999999985 999999999999995 7899988753 3455 88887
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.06 E-value=2.7e-06 Score=57.59 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.++ ....+ |+|||
T Consensus 5 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 53 (85)
T 3mdf_A 5 TTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKH----RGFAF 53 (85)
T ss_dssp CCSSEEEEECCCTT-CCHHHHHHHHGGGSCEEEEECCEETTTTEE----CSEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHhccCCEEEEEEEECCCCCcc----ccEEE
Confidence 45689999999975 899999999999999999998765 33333 77765
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=7.4e-06 Score=56.47 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~----~g~af 62 (94)
T 2e5h_A 14 PSKSTVYVSNLPFS-LTNNDLYRIFSKYGKVVKVTIMKDKDTRKS----KGVAF 62 (94)
T ss_dssp CCTTSEEEESCCTT-SCHHHHHHHTTTTSCEEEEEECCCSSSCCC----TTCEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCc----ccEEE
Confidence 35689999999975 99999999999999999999987543 334 77776
No 19
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=6.2e-06 Score=59.24 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.+.... + |+|+|
T Consensus 27 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~-~----kg~af 73 (109)
T 2err_A 27 SQPKRLHVSNIPFR-FRDPDLRQMFGQFGKILDVEIIFNERG-S----KGFGF 73 (109)
T ss_dssp TCCCEEEEESCCTT-CCHHHHHHHGGGTCCCSCEEECCBTTB-C----TTEEE
T ss_pred CCCCEEEEECCCCc-CCHHHHHHHHHhcCCEEEEEEEECCCC-C----ceEEE
Confidence 45789999999975 999999999999999999999876432 4 77776
No 20
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=7.7e-06 Score=59.09 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=41.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcc-cEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEI-ALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V-~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.| ..|+|.+.....+ |+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~----~G~af 61 (114)
T 2cpy_A 13 SAKVCAHITNIPFS-ITKMDVLQFLEGIPVDENAVHVLVDNNGQG----LGQAL 61 (114)
T ss_dssp SCCCEEEEESCCTT-SCHHHHHHHTTTSCCCSTTEEECCCTTSSC----SSCEE
T ss_pred CCccEEEEeCcCCc-CCHHHHHHHHHhCCCcCCeEEEEECCCCCc----ceEEE
Confidence 45689999999985 9999999999999999 8999988665555 88887
No 21
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.05 E-value=4.8e-06 Score=56.79 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=39.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
+.|+|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 5 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 52 (89)
T 3ucg_A 5 DARSIYVGNVDYG-ATAEELEAHFHGCGSVNRVTILCDKFSGHP----KGFAY 52 (89)
T ss_dssp HHTEEEEESCCTT-CCHHHHHHHHGGGCCEEEEEEEESCSSSSC----CEEEE
T ss_pred cCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEecCCCCCc----ceEEE
Confidence 4589999999975 8999999999999999999988753 3444 77776
No 22
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.04 E-value=6.6e-06 Score=59.93 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=41.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.....+ |+|+|
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 52 (116)
T 2fy1_A 5 DHPGKLFIGGLNRE-TNEKMLKAVFGKHGPISEVLLIKDRTSKS----RGFAF 52 (116)
T ss_dssp CSCCEEEEECCTTT-CCHHHHHHHHHTSSCCSEEEEECSTTTTC----CCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCc----ccEEE
Confidence 34689999999975 99999999999999999999998764444 78876
No 23
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=4e-06 Score=55.70 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=37.8
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
++|||.++|.+ ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 1 ~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~----~g~af 46 (77)
T 1uaw_A 1 CKMFIGGLSWQ-TTQEGLREYFGQFGEVKECLVMRDPLTKRS----RGFGF 46 (77)
T ss_dssp CCEEEESCCSS-CCSHHHHHHHTTTSCCCCEEEECCCCSSSC----SSEEE
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEecCCCCCCc----CceEE
Confidence 57999999975 89999999999999999999988543 444 77775
No 24
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=6.6e-06 Score=55.82 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.++.. ..+ |+|+|
T Consensus 4 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~----~g~af 51 (85)
T 1x4e_A 4 GSSGLYIRGLQPG-TTDQDLVKLCQPYGKIVSTKAILDKTTNKC----KGYGF 51 (85)
T ss_dssp CCCEEEEESCCTT-CCHHHHHTTSTTTSCEEEEEEECCSSSCSC----CSEEE
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCc----CcEEE
Confidence 4689999999975 99999999999999999999887633 333 77776
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=1.2e-05 Score=56.19 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 8 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 56 (99)
T 2dgs_A 8 SKSNKIFVGGIPHN-CGETELREYFKKFGVVTEVVMIYDAEKQRP----RGFGF 56 (99)
T ss_dssp SSCCEEEEESCCSS-CCHHHHHHHHSSSSCEEEEEECCCTTTCSC----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCC----CceEE
Confidence 45689999999975 99999999999999999999987533 334 77876
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.02 E-value=5.9e-06 Score=62.56 Aligned_cols=48 Identities=27% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|+|.+... ..+ |+|||
T Consensus 37 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 85 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY-TTEEQIYELFSKSGDIKKIIMGLDKMKKTA----CGFCF 85 (156)
T ss_dssp TTCCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcc----ceEEE
Confidence 35689999999975 99999999999999999999987543 333 77776
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.02 E-value=4.4e-06 Score=56.74 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
+.++|||.++|.+ ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 5 ~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 52 (87)
T 3bs9_A 5 SHFHVFVGDLSPE-ITTAAIAAAFAPFGRISDARVVKDMATGKS----KGYGF 52 (87)
T ss_dssp -CEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEEecCCCCcc----ceEEE
Confidence 4689999999975 9999999999999999999998753 3333 77775
No 28
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=5.8e-06 Score=58.17 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.... + |+|+|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~-~----~g~af 59 (103)
T 2cqi_A 13 GQPRTLYVGNLSRD-VTEVLILQLFSQIGPCKSCKMITEHTS-N----DPYCF 59 (103)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHHHHHSCEEEEEEECCCCS-S----CCEEE
T ss_pred CCCCEEEEeCCCcc-CCHHHHHHHHHhcCCEeEEEEEecCCC-C----CCEEE
Confidence 45689999999975 899999999999999999999986332 3 77776
No 29
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.02 E-value=5.3e-06 Score=57.83 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=37.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
....+|||.++|.+ +|.++|+++|++||.|..|++.+. + |+|+|
T Consensus 9 ~~~~~l~V~~Lp~~-~te~~L~~~F~~~G~i~~v~i~~~----s----rGfaF 52 (89)
T 3d2w_A 9 HHGSKVFVGRCTED-MTAEELQQFFCQYGEVVDVFIPKP----F----RAFAF 52 (89)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEECCSS----C----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCEEEEEEeeC----C----CCEEE
Confidence 45679999999975 999999999999999999999862 4 88876
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=7.5e-06 Score=57.75 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC--CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG--KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~--~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.. ...+ |+|||
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~----~g~af 62 (107)
T 2cph_A 13 QTTSKILVRNIPFQ-ANQREIRELFSTFGELKTVRLPKKMTGTGAH----RGFGF 62 (107)
T ss_dssp SCCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCCCCSSSCSS----CSEEE
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHccCCeEEEEEecCCCCCCCc----CceEE
Confidence 45689999999975 9999999999999999999998752 3333 77776
No 31
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1e-05 Score=58.19 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
....++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 14 ~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 63 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYH-TTDASLRKYFEGFGDIEEAVVITDRQTGKS----RGYGF 63 (116)
T ss_dssp SCSSSEEEEECCCSS-CCHHHHHHHHHTTSCEEEEEESCCSSSCCC----CSEEE
T ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeeEEEEEEcCCCCcc----ceEEE
Confidence 346789999999975 99999999999999999999988643 333 77776
No 32
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.01 E-value=4.2e-06 Score=58.85 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.....+ |+|+|
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 54 (102)
T 2xs2_A 7 IMPNTVFVGGIDVR-MDETEIRSFFARYGSVKEVKIITDRTGVS----KGYGF 54 (102)
T ss_dssp EEEEEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEEECCCCCc----cceEE
Confidence 34689999999975 99999999999999999999988654444 78876
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1e-05 Score=57.02 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=40.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 61 (105)
T 1x5u_A 13 NQDATVYVGGLDEK-VSEPLLWELFLQAGPVVNTHMPKDRVTGQH----QGYGF 61 (105)
T ss_dssp CTTTEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCBCSSSCSB----CSCEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcC----CcEEE
Confidence 45689999999975 9999999999999999999998754 3334 77876
No 34
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=9.2e-06 Score=57.81 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=39.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.++ + |+|+|
T Consensus 20 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~--~----~g~af 65 (109)
T 1x4a_A 20 NNDCRIYVGNLPPD-IRTKDIEDVFYKYGAIRDIDLKNRRG--G----PPFAF 65 (109)
T ss_dssp CCSSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEECCSSS--S----SCCEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCC--C----CcEEE
Confidence 45689999999975 89999999999999999999976543 3 77776
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.00 E-value=5.6e-06 Score=60.15 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=40.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
+.++|||.++|.. ++.++|+++|++||.|..|+|.++.. ..+ |+|+|
T Consensus 5 p~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~v~i~~d~~tg~~----rG~aF 52 (110)
T 3s8s_A 5 PLKEVTFARLNDN-VRETFLKDMCRKYGEVEEVEILLHPRTRKH----LGLAR 52 (110)
T ss_dssp CCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhcCCeeEEEEEECCCCCce----eeEEE
Confidence 4689999999975 99999999999999999999887544 444 88876
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=9.4e-06 Score=56.04 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=39.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 4 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~----~g~af 51 (95)
T 2dnz_A 4 GSSGLYVGSLHFN-ITEDMLRGIFEPFGKIDNIVLMKDSDTGRS----KGYGF 51 (95)
T ss_dssp CCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEECCSSSCCC----CSEEE
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEeecCCCCce----eeEEE
Confidence 4689999999975 99999999999999999999988643 334 77776
No 37
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=6.2e-06 Score=59.44 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=37.0
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|+|.+. |+|||
T Consensus 14 p~~~l~V~nLp~~-~te~~L~~~F~~fG~v~~v~i~~~---------kg~aF 55 (101)
T 2cq1_A 14 PSRVLHIRKLPGE-VTETEVIALGLPFGKVTNILMLKG---------KNQAF 55 (101)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHTTTTTSCEEEEEEETT---------TTEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEECC---------CCEEE
Confidence 4689999999975 999999999999999999999862 77776
No 38
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=9e-06 Score=58.30 Aligned_cols=47 Identities=11% Similarity=0.355 Sum_probs=39.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|+.||.|..|++.+... ..+ |+|+|
T Consensus 24 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 71 (114)
T 2cq4_A 24 DARTVFCMQLAAR-IRPRDLEDFFSAVGKVRDVRIISDRNSRRS----KGIAY 71 (114)
T ss_dssp HHTEEEEESCCTT-CCHHHHHHHHTTTSCEEEEEECCSCCSSSC----CCCEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhCCCEeEEEEEecCCCCcc----CcEEE
Confidence 4589999999975 99999999999999999999987544 334 78876
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=9.8e-06 Score=57.50 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+...... -|+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---~~g~af 61 (111)
T 1x4h_A 13 TEGKTVFIRNLSFD-SEEEALGEVLQQFGDLKYVRVVLHPDTEH---SKGCAF 61 (111)
T ss_dssp CCCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCSSSCC---BCSEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCC---CccEEE
Confidence 45689999999975 99999999999999999999987543221 377876
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=6.9e-06 Score=57.81 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+. ... -|+|||
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~-~g~----~~g~af 59 (103)
T 2d9p_A 13 YQVVNLYVKNLDDG-IDDERLRKAFSPFGTITSAKVMME-GGR----SKGFGF 59 (103)
T ss_dssp SSCCCEEEECCCTT-CCHHHHHHTTTTTSCEEEEEEEEC-SSS----EEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEcC-CCC----cCEEEE
Confidence 45689999999985 999999999999999999999986 333 377776
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=6.3e-06 Score=57.05 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=39.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEE-EeeCC-CCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALI-RLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~V-rl~r~-~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|++||.|..| ++.++ ....+ |+|+|
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~----~g~af 52 (96)
T 1x5t_A 4 GSSGIFIGNLDPE-IDEKLLYDTFSAFGVILQTPKIMRDPDTGNS----KGYAF 52 (96)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTTSCBSSCCEECCCTTTCSC----CSEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCc----CeEEE
Confidence 4689999999975 9999999999999999999 99876 33444 77776
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.98 E-value=6.3e-06 Score=58.17 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 11 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 59 (106)
T 2dgp_A 11 HDAIKLFIGQIPRN-LDEKDLKPLFEEFGKIYELTVLKDRFTGMH----KGCAF 59 (106)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHHHHSCCCEEECCCCSSSCSC----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCCc----ceEEE
Confidence 45789999999975 99999999999999999999987543 334 77776
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.98 E-value=8.1e-06 Score=56.82 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=38.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
.++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 2 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 48 (96)
T 2x1f_A 2 SRVVYLGSIPYD-QTEEQILDLCSNVGPVINLKMMFDPQTGRS----KGYAF 48 (96)
T ss_dssp CSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCTTTCCB----CSEEE
T ss_pred CcEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCcc----ceEEE
Confidence 579999999975 99999999999999999999987633 333 77776
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=4.7e-06 Score=61.09 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|+|.+. |+|||
T Consensus 15 ~~~~LfV~nLp~~-vte~dL~~lF~~fG~V~~v~i~~~---------kGfaF 56 (105)
T 1sjq_A 15 PSRVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKG---------KNQAF 56 (105)
T ss_dssp CCCEEEECSCCTT-SCHHHHHHHHHHHCCEEEEEEETT---------TTEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEcC---------CCEEE
Confidence 4689999999975 999999999999999999999862 67776
No 45
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.98 E-value=4.7e-06 Score=56.40 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=36.0
Q ss_pred ceEEEecCCCCCC------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESA------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
++|||.++|.. . +.++|+++|++||.|..|+|++ ....+ |+|+|
T Consensus 2 ~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~~----~g~af 51 (81)
T 2krb_A 2 SVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKT----KGYIF 51 (81)
T ss_dssp CEEEEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCC-BTTBC----CCEEE
T ss_pred CEEEEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecC-CCCcE----eEEEE
Confidence 78999999975 5 6799999999999999999884 22334 77876
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=7.2e-06 Score=58.61 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.....+ |+|+|
T Consensus 13 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~g~~----~g~af 60 (114)
T 2do0_A 13 RLGSTVFVANLDYK-VGWKKLKEVFSMAGVVVRADILEDKDGKS----RGIGT 60 (114)
T ss_dssp CCCSCEEEESCCTT-CCHHHHHHHHTTTSCEEEEEEEECTTCSE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCe----eeEEE
Confidence 34689999999975 99999999999999999999988654444 77776
No 47
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=7.3e-06 Score=57.85 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+... ..+ |+|||
T Consensus 21 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 69 (106)
T 1p27_B 21 VEGWILFVTGVHEE-ATEEDIHDKFAEYGEIKNIHLNLDRRTGYL----KGYTL 69 (106)
T ss_dssp TTBEEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTSSE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCce----eeEEE
Confidence 45689999999975 99999999999999999999987533 333 77776
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.97 E-value=1.2e-05 Score=57.67 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+.+.. |+|+|
T Consensus 7 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~------~g~af 51 (115)
T 3lqv_A 7 VNRILYIRNLPYK-ITAEEMYDIFGKYGPIRQIRVGNTPET------RGTAY 51 (115)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEECSTTT------TTCEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeCCCC------CcEEE
Confidence 4589999999975 999999999999999999999875432 67776
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.97 E-value=1.6e-05 Score=57.15 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 38 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~----~g~af 86 (118)
T 2khc_A 38 PEGCNLFIYHLPQE-FTDTDLASTFLPFGNVISAKVFIDKQTSLS----KCFGF 86 (118)
T ss_dssp CCSEEEEEECSCTT-CCHHHHHHHTTTSCEEEEEEECCCSSSSCC----CCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCCc----CcEEE
Confidence 45689999999975 99999999999999999999987633 333 77776
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=1.2e-05 Score=56.61 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 59 (103)
T 2dnm_A 11 DGMITLKVDNLTYR-TSPDSLRRVFEKYGRVGDVYIPREPHTKAP----RGFAF 59 (103)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHTTTSCEEEEECCBCSSSCSB----CSCEE
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEeCCCCCCC----CeEEE
Confidence 34689999999975 99999999999999999999987543 333 77776
No 51
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=7.5e-06 Score=58.63 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=40.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.....+ |+|+|
T Consensus 23 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~~----~g~af 70 (114)
T 1x5o_A 23 QDPTNLYISNLPLS-MDEQELENMLKPFGQVISTRILRDSSGTS----RGVGF 70 (114)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHTTTTTSCEEEEEEEECSSSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCc----ceEEE
Confidence 45689999999975 99999999999999999999988654444 77776
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=8.6e-06 Score=57.08 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 10 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 58 (102)
T 2cqb_A 10 TTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKH----RGFAF 58 (102)
T ss_dssp CCCSCEEEESCCSS-CCHHHHHHHHTTTSCCCCEECCCCSSSCCC----SSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHhhccCCEEEEEEEecCCCCCc----ceEEE
Confidence 35689999999975 9999999999999999999998753 2334 77776
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=8.7e-06 Score=58.87 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.+ ++.++|+++|++||.|..|+|.+
T Consensus 13 ~p~~~l~V~nLp~~-~te~~L~~~F~~fG~V~~v~i~~ 49 (104)
T 1wex_A 13 SVSPVVHVRGLCES-VVEADLVEALEKFGTICYVMMMP 49 (104)
T ss_dssp CCCSEEEEESCCSS-CCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEC
Confidence 34689999999975 89999999999999999999986
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.95 E-value=6.8e-06 Score=58.11 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=40.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.....+ |+|+|
T Consensus 27 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~----~g~af 74 (107)
T 3ulh_A 27 ETGGKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVHYDRSGRS----LGTAD 74 (107)
T ss_dssp CCSEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEECTTSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCc----ceEEE
Confidence 35689999999975 99999999999999999999988664444 77776
No 55
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=7.4e-06 Score=61.20 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|+|.+. |+|||
T Consensus 30 ps~~LfVgNLp~~-vte~dL~~lF~~fG~V~~v~i~~~---------kG~AF 71 (119)
T 2ad9_A 30 PSRVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKG---------KNQAF 71 (119)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHTTTSCCCEEEEEGG---------GTEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEeCC---------CCEEE
Confidence 4689999999975 999999999999999999999862 67776
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=9.6e-06 Score=56.84 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 10 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 58 (102)
T 1x5s_A 10 SDEGKLFVGGLSFD-TNEQSLEQVFSKYGQISEVVVVKDRETQRS----RGFGF 58 (102)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHHHHHSCCCEEEECCCSSSCSC----CSEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEEEEeCCCCCCc----ccEEE
Confidence 35689999999975 99999999999999999999987532 333 77776
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.94 E-value=1e-05 Score=57.96 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.. ...+ |+|||
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 61 (115)
T 2dgo_A 13 SNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKS----KGYGF 61 (115)
T ss_dssp TTCEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCCc----ceEEE
Confidence 45789999999975 9999999999999999999998753 3334 77776
No 58
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=7.8e-06 Score=57.51 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.|..|++.+... ..+ |+|+|
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 61 (103)
T 2cqg_A 13 QKTSDLIVLGLPWK-TTEQDLKEYFSTFGEVLMVQVKKDLKTGHS----KGFGF 61 (103)
T ss_dssp CCCCCEEEESCCSS-CCHHHHHHHHGGGSCEEEEEEEECSSSCSE----EEEEE
T ss_pred CCCCEEEEEcCCCc-CCHHHHHHHHHhcCCeEEEEEEecCCCCCc----cceEE
Confidence 45689999999975 89999999999999999999987533 334 77776
No 59
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.4e-05 Score=56.76 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE-EEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL-IRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~-Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|.. |+|.+.....+ |+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~~v~i~~~~~g~~----~G~af 61 (104)
T 1wg5_A 13 ANDGFVRLRGLPFG-CSKEEIVQFFSGLEIVPNGMTLPVDFQGRS----TGEAF 61 (104)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHTTTCCEEEEEEECCBCSSSCB----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCcceeEEEEECCCCCc----ceEEE
Confidence 34689999999975 899999999999999987 99987654455 78876
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.94 E-value=8.5e-06 Score=54.81 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=37.7
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
.+|||.++|.+ ++.++|+++|++||.|..|++.++ ....+ |+|+|
T Consensus 2 ~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~----~g~af 47 (83)
T 3md1_A 2 FNLFVGDLNVN-VDDETLRNAFKDFPSYLSGHVMWDMQTGSS----RGYGF 47 (83)
T ss_dssp EEEEEECCCTT-CCHHHHHHHHTTSTTEEEEEEEECTTTCCE----EEEEE
T ss_pred eEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEEcCCCCCc----cceEE
Confidence 58999999975 999999999999999999998875 33334 77776
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.93 E-value=1.3e-05 Score=57.03 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 24 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 72 (110)
T 1oo0_B 24 VEGWILFVTSIHEE-AQEDEIQEKFCDYGEIKNIHLNLDRRTGFS----KGYAL 72 (110)
T ss_dssp TTBEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEECCBCTTTSSB----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCc----ceEEE
Confidence 45689999999975 9999999999999999999998753 3334 77776
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.7e-05 Score=55.89 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=39.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC--CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK--YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~--~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.|| |..|++.+... ..+ |+|||
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~----~g~af 61 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD-VTEESIKEFFRGLN-ISAVRLPREPSNPERL----KGFGY 61 (104)
T ss_dssp SSCEEEEEESCCSS-CCHHHHHHHTTTSC-EEEEECCBCSSCTTSB----CSCEE
T ss_pred CCCCEEEEeCCCCc-CCHHHHHHHHHHCC-ceEEEEecCCCCCCCc----CeEEE
Confidence 34689999999975 99999999999999 99999987643 333 77876
No 63
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.93 E-value=1.4e-05 Score=58.11 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|..|+|.+.. ...+ |+|||
T Consensus 20 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 68 (126)
T 3ex7_B 20 VEGWILFVTGVHEE-ATEEDIHDKFAEYGEIKNIHLNLDRRTGYL----KGYTL 68 (126)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCBCTTTSSB----CSCEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcc----ceEEE
Confidence 45789999999975 8999999999999999999988753 3333 77876
No 64
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=2e-05 Score=55.13 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD-ITEEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCTTEEEEESCCTT-CCHHHHHHHTSTTCCCSEEEEETT
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEecC
Confidence 45689999999975 999999999999999999999863
No 65
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.91 E-value=6e-06 Score=61.84 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=41.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. +|.++|+++|++||.|..|++.+.....+ |+|+|
T Consensus 93 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~v~~~~~~~g~~----~g~af 140 (175)
T 3nmr_A 93 VEDRKLFIGMISKK-CTENDIRVMFSSFGQIEECRILRGPDGLS----RGCAF 140 (175)
T ss_dssp GGGSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTSCE----EEEEE
T ss_pred CCCCeEEEcCCCCc-CCHHHHHHHHHhCCCEEEEEEEECCCCCE----EEEEE
Confidence 35689999999975 99999999999999999999988755555 77776
No 66
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.6e-05 Score=57.19 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=39.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|+.||.|..|++.+... ..+ |+|+|
T Consensus 26 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 73 (116)
T 1x4b_A 26 QFRKLFIGGLSFE-TTEESLRNYYEQWGKLTDCVVMRDPASKRS----RGFGF 73 (116)
T ss_dssp HHTEEEEECCTTC-CCHHHHHHHHTSSCCCSEEEEECCTTTSSC----CSEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEECCCCCCc----CceEE
Confidence 3589999999975 99999999999999999999988633 444 77876
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.91 E-value=8.1e-06 Score=56.06 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+. ... -|+|+|
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~-~g~----~~g~af 52 (92)
T 2dgv_A 6 SGACQIFVRNLPFD-FTWKMLKDKFNECGHVLYADIKME-NGK----SKGCGV 52 (92)
T ss_dssp SSCCEEEECSCCTT-CCHHHHHHHHHTTSCEEEEEEEES-SSC----EEEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEcc-CCC----cceEEE
Confidence 35689999999975 999999999999999999999873 222 367765
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.1e-05 Score=55.50 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 13 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~----~g~af 61 (95)
T 2cqc_A 13 DPNCCLGVFGLSLY-TTERDLREVFSKYGPIADVSIVYDQQSRRS----RGFAF 61 (95)
T ss_dssp CGGGCEEEESCCSS-CCHHHHHHHHHTTSCEEEEEEEECSSSSSE----EEEEE
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCeeEEEEEEcCCCCCc----ccEEE
Confidence 35689999999985 99999999999999999999987543 233 67765
No 69
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.90 E-value=5.6e-06 Score=60.05 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=38.0
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..+|||.++|.+ ++.++|+++|++||.|..|++.+.... + |+|+|
T Consensus 5 ~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~i~~d~~~-~----kg~af 49 (115)
T 4f25_A 5 SGNIFIKNLDKS-IDNKALYDTFSAFGNILSCKVVCDENG-S----KGYGF 49 (115)
T ss_dssp CCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETTE-E----EEEEE
T ss_pred CCEEEECCCCCC-CCHHHHHHHHhccCCEEEEEEeecCCC-C----CceEE
Confidence 458999999985 999999999999999999998875322 4 77876
No 70
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.90 E-value=3.1e-05 Score=57.65 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~ 164 (175)
+.+....|++.-....+......|....|-. .....++|+|.++|.. ++.++|+++|++||.|..|++.++. ...
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~---~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARPGG---ESIKDTNLYVTNLPRT-ITDDQLDTIFGKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCS---STTTTCEEEEESCCTT-CCHHHHHHHHTSSSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCCCc---ccCCCCCEEEeCCCCC-CCHHHHHHhhhcCCcEEEEEEEEcCCCCC
Confidence 5677777776544445542222344333222 1245689999999975 8999999999999999999998865 333
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 130 ~----~g~af 135 (168)
T 1b7f_A 130 P----RGVAF 135 (168)
T ss_dssp E----EEEEE
T ss_pred c----ceEEE
Confidence 4 66665
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.90 E-value=8.1e-06 Score=54.10 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=36.9
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
+|||.++|.+ ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 1 ~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 45 (75)
T 2mss_A 1 KIFVGGLSVN-TTVEDVKHYFEQFGKVDDAMLMFDKTTNRH----RGFGF 45 (75)
T ss_dssp CEEEECCCSS-CCHHHHHHHHHTTSCCSEECCCBCSSSTTS----CBEEE
T ss_pred CEEEecCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCc----CcEEE
Confidence 4899999975 9999999999999999999988764 3334 77776
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.90 E-value=1.4e-05 Score=58.64 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+. ....+ |+|||
T Consensus 61 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 109 (140)
T 2ku7_A 61 TTKRVLYVGGLAEE-VDDKVLHAAFIPFGDITDIQIPLDYETEKH----RGFAF 109 (140)
T ss_dssp SSCCEEEEECCCTT-CCHHHHHHHHGGGSCEEEEECCCCTTTCCC----CSEEE
T ss_pred CCCcEEEEEeCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCc----CcEEE
Confidence 45689999999985 999999999999999999999875 33344 78876
No 73
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=8.9e-06 Score=57.22 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|||
T Consensus 13 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~af 61 (103)
T 2cq0_A 13 DDNATIRVTNLSED-TRETDLQELFRPFGSISRIYLAKDKTTGQS----KGFAF 61 (103)
T ss_dssp SSSEEEEEESCCTT-CCHHHHHTTSTTTCCEEEEEEEECSSSCSE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCeEEEEEeecCCCCce----eeEEE
Confidence 45689999999975 9999999999999999999998753 3333 77775
No 74
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.89 E-value=6.3e-06 Score=54.54 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=37.1
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
||||.++|.+ ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 1 ~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 45 (75)
T 1iqt_A 1 KIFVGGLSPD-TPEEKIREYFGGFGEVESIELPMDNKTNKR----RGFCF 45 (75)
T ss_dssp CEEESCCCSS-CCHHHHHHHHHHHSCCSEECCCCSCCCSSS----CCCEE
T ss_pred CEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCc----CCEEE
Confidence 5899999975 89999999999999999999887533 334 78876
No 75
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.89 E-value=4e-05 Score=56.66 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=56.0
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~ 164 (175)
+.+....|++.-....+......|....+-... .....++|+|.++|.. ++.++|+++|++||.|..|++.+. ....
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~-~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 50 QSHDANIALQTLNGKQIENNIVKINWAFQSQQS-SSDDTFNLFVGDLNVN-VDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCCC-CCTTCEEEEEESCCTT-CCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC-CCCCCceEEECCCCCC-CCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 577777787654444554222234433322221 2345689999999975 899999999999999999998875 3334
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 128 ~----~g~af 133 (166)
T 3md3_A 128 S----RGYGF 133 (166)
T ss_dssp E----EEEEE
T ss_pred c----ceEEE
Confidence 4 67765
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.89 E-value=1.3e-05 Score=57.55 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=39.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.|..|+|.+.. ...+ |+|+|
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 71 (115)
T 2cpz_A 23 PEGANLFIYHLPQE-FGDQDLLQMFMPFGNVVSAKVFIDKQTNLS----KCFGF 71 (115)
T ss_dssp STTCCEEEESCCSS-CCHHHHHHHHGGGSCCSEEEEEECSSSCSE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCCc----CccEE
Confidence 35689999999975 9999999999999999999998754 2333 77776
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.89 E-value=1.8e-05 Score=58.91 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 44 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~----~G~af 92 (129)
T 2kxn_B 44 DPNCCLGVFGLSLY-TTERDLREVFSKYGPIADVSIVYDQQSRRS----RGFAF 92 (129)
T ss_dssp CCSSCBCEETCTTS-CCHHHHHHHHTTTSCEEEEEEECCSSSSCC----CCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCcc----ceEEE
Confidence 45689999999985 99999999999999999999987533 333 77776
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.89 E-value=1.5e-05 Score=58.02 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=40.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|+.||.|..|++.+.....+ |+|+|
T Consensus 34 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~g~~----~g~af 80 (124)
T 2kt5_A 34 TGAKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVDYDRSGRS----LGTAD 80 (124)
T ss_dssp SCEEEEEESCCSS-CCHHHHHHHHHTTSCCSEEEEECCSSSSC----CSEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEECCCCCE----eeEEE
Confidence 4589999999975 89999999999999999999988654444 78876
No 79
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.88 E-value=3.9e-06 Score=57.57 Aligned_cols=45 Identities=29% Similarity=0.410 Sum_probs=38.4
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
|+|||.++|.+ ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 2 ~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 47 (90)
T 2ki2_A 2 RNIYVGNLVYS-ATSEQVKELFSQFGKVFNVKLIYDRETKKP----KGFGF 47 (90)
T ss_dssp EEEEEEEECTT-SSHHHHTTTHHHHTCCSEEEECCCSSSCCC----CEEEE
T ss_pred cEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEEEcCCCCCc----ceEEE
Confidence 68999999975 99999999999999999999987643 334 77776
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=6.7e-06 Score=58.04 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|..|++.+.. ...+ |+|+|
T Consensus 14 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~----~g~af 62 (105)
T 2dh8_A 14 DEIGKLFVGGLDWS-TTQETLRSYFSQYGEVVDCVIMKDKTTNQS----RGFGF 62 (105)
T ss_dssp SSSSEECCBSCCTT-CCHHHHHHHHHTTSCEEEEEEEECSSSCCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeCCCCCCc----ceEEE
Confidence 45689999999975 9999999999999999999988753 3333 77776
No 81
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=57.83 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|||
T Consensus 24 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 72 (108)
T 2jrs_A 24 AGPMRLYVGSLHFN-ITEDMLRGIFEPFGRIESIQLMMDSETGRS----KGYGF 72 (108)
T ss_dssp SSCEEEEEECCCSS-CCHHHHHHHHTTTSCEEEEEEEEETTTTEE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCCCcc----ceEEE
Confidence 45689999999975 99999999999999999999887532 333 77776
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.86 E-value=8.7e-06 Score=57.41 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=38.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC--CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG--KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~--~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.|| |..|+|.+.. ...+ |+|+|
T Consensus 17 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~----~g~af 65 (100)
T 2j76_E 17 SPPYTAFLGNLPYD-VTEESIKEFFRGLN-ISAVRLPREPSNPERL----KGFGY 65 (100)
T ss_dssp ---CEEEESCCSSC-CSSSHHHHHSCSSC-EEEEECSCCTTTTCCC----CSCEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcC-CeEEEEEecCCcCCcc----CeEEE
Confidence 45799999999975 89999999999999 9999998764 3444 88886
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=2.4e-05 Score=55.83 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCccc--------EEEeeCC-CCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIA--------LIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~--------~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|. .|++.+. ....+ |+|||
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~----~g~af 69 (113)
T 2cpe_A 13 SDNSAIYVQGLNDS-VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP----KGDAT 69 (113)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSB----CSEEE
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCe----eeEEE
Confidence 46789999999975 99999999999999999 5998875 33333 77876
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.86 E-value=2.7e-05 Score=54.43 Aligned_cols=48 Identities=27% Similarity=0.267 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE--------EEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL--------IRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~--------Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|.. |++.+... ..+ |+|||
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~----~G~af 67 (99)
T 2la6_A 11 SDNNTIFVQGLGEN-VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL----KGEAT 67 (99)
T ss_dssp CCCSEEEEECCCSS-CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCe----eeEEE
Confidence 45689999999975 999999999999999999 99887533 333 77776
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.85 E-value=3.2e-06 Score=59.86 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred CCceEEEecCCC------CCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPP------ESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~------~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
..+||||.++|. + .+.++|+++|++||.|..|+|++... ..+ |+|+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~-~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~----kG~af 58 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVP-VLKKALTSLFSKAGKVVNMEFPIDEATGKT----KGFLF 58 (100)
T ss_dssp GGGEEEEESCCCCBGGGHH-HHHHHHHHHHHTTSCEEEEECCEETTTTEE----CSEEE
T ss_pred cCcEEEEeCCCcCChHHHH-HHHHHHHHHHHhcCCEeEEEEEEcCCCCcc----ceEEE
Confidence 358999999997 4 78899999999999999999887544 444 88876
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=56.46 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhcc-CCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKP-CGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~-~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++ ||.|..|++.+.....+ |+|+|
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~----~g~af 55 (104)
T 2dhg_A 7 GPEYSLFVGDLTPD-VDDGMLYEFFVKVYPSCRGGKVVLDQTGVS----KGYGF 55 (104)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHHHHHCTTEEEEEEEECTTCCE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCCeEEEEEEECCCCCc----cceEE
Confidence 34589999999975 999999999999 99999999988654334 77776
No 87
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=1e-05 Score=58.66 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=33.2
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
+.++|||.++|...++.++|+++|++||.|..|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~ 50 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc
Confidence 4689999999972389999999999999999999876
No 88
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.6e-05 Score=57.45 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=39.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.|. +++.+....-+-+.-|+|||
T Consensus 6 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aF 56 (114)
T 2dnl_A 6 SGSRKVFVGGLPPD-IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAF 56 (114)
T ss_dssp SCCCCEEEECCCTT-CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEE
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEE
Confidence 34689999999975 99999999999999999 77776544311022388887
No 89
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.6e-05 Score=53.79 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+
T Consensus 10 ~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 10 KTITTLYVGGLGDT-ITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp SSCCCEEEECCTTT-SCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CCccEEEEcCCCCC-CCHHHHHHHHHhCCCEeEEEEEC
Confidence 45689999999975 99999999999999999999986
No 90
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.83 E-value=5.1e-05 Score=57.98 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCC---CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 85 KDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD---QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 85 ~d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~---~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.+.+....||.. ....+..-...|.+..+-.... .....++|||.++|.. ++.++|+++|++||.|..|++.+..
T Consensus 63 ~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKED-TEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp SSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTT-CCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEeecC
Confidence 357777888876 3344442222344432221111 1234589999999975 9999999999999999999988753
Q ss_pred -CCCCCCCCccCCC
Q psy9843 162 -KYTKYGNTRHFSF 174 (175)
Q Consensus 162 -~~~p~~~~~~~~~ 174 (175)
...+ |+|+|
T Consensus 141 ~~g~~----~g~af 150 (196)
T 1l3k_A 141 GSGKK----RGFAF 150 (196)
T ss_dssp TTCCE----EEEEE
T ss_pred CCCCc----cceEE
Confidence 3334 77776
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.82 E-value=1e-05 Score=54.89 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+..
T Consensus 3 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 3 KPTKVHIGRLTRN-VTKDHIMEIFSTYGKIKMIDMPVER 40 (88)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTTSCEEEEECCEET
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 4579999999975 8999999999999999999987643
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=1.6e-05 Score=55.33 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCccc-EEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIA-LIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~-~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|. .|++.+.. ...+ |+|+|
T Consensus 7 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~----~g~af 56 (99)
T 2div_A 7 GMAASLWMGDLEPY-MDENFISRAFATMGETVMSVKIIRNRLTGIP----AGYCF 56 (99)
T ss_dssp SSSSEEEECSCCTT-CCHHHHHHHHHHTTCCCCEEEEEECSSSCCE----EEEEE
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEeecCCCCCc----CCEEE
Confidence 35689999999975 99999999999999999 99998754 2333 67765
No 93
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.81 E-value=1.4e-05 Score=58.30 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCc---ccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGE---IALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~---V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|+.||. |..|+|.+.....+ |+|||
T Consensus 15 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~----~G~af 65 (118)
T 2db1_A 15 GEGYVVKLRGLPWS-CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQ----SGEAF 65 (118)
T ss_dssp CCCCEEEEESCCTT-CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCccCceeEEEEECCCCCC----CeEEE
Confidence 35689999999985 899999999999999 89999987655555 88876
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=59.32 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=40.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE--EEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL--IRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~--Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|++||.|.. |++.+.. ...+ |+|+|
T Consensus 21 ~~~~~lfV~nL~~~-~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~----rG~aF 71 (131)
T 2m2b_A 21 NANDTIILRNLNPH-STMDSILGALAPYAVLSSSNVRVIKDKQTQLN----RGFAF 71 (131)
T ss_dssp CCCCEEEECSCCTT-CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSB----CSCEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCc----ceEEE
Confidence 45689999999975 899999999999999976 9988865 4445 88887
No 95
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.81 E-value=4e-05 Score=57.37 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=55.3
Q ss_pred CCHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CC
Q psy9843 85 KDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KY 163 (175)
Q Consensus 85 ~d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~ 163 (175)
.+.+....|+ .-....+. |..|+-..+-+.. .....++|+|.++|.. ++.++|+++|++||.|..|++.+.. ..
T Consensus 59 ~~~~~A~~A~-~~~~~~~~--g~~i~v~~~~~~~-~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQ--GQSLKIRRPHDYQ-PLPGAHKLFIGGLPNY-LNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp SSHHHHHHHG-GGTTCEET--TEECEEECCSSCC-CCTTTTCEEEECCCTT-CCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHH-HhCCcEec--CceeeecCCcccC-CCCCCCEEEEEcCCCc-CCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3677778888 44445554 4443322222211 1234689999999975 8999999999999999999988763 44
Q ss_pred CCCCCCccCCC
Q psy9843 164 TKYGNTRHFSF 174 (175)
Q Consensus 164 ~p~~~~~~~~~ 174 (175)
.+ |+|+|
T Consensus 134 ~~----~g~af 140 (172)
T 2g4b_A 134 LS----KGYAF 140 (172)
T ss_dssp SE----EEEEE
T ss_pred Cc----ceEEE
Confidence 44 67765
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.81 E-value=2.1e-05 Score=56.01 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=37.5
Q ss_pred CCceEEEecCCCCCC------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESA------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. + +.++|+++|++||.|..|+|.+ ....+ |+|+|
T Consensus 14 ~~~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g~~----~G~af 65 (105)
T 2nlw_A 14 IDSVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKT----KGYIF 65 (105)
T ss_dssp CCSEEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTTBS----CCEEE
T ss_pred CCCEEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCCCe----eeEEE
Confidence 4689999999975 5 6799999999999999999984 22334 78876
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.81 E-value=1e-05 Score=58.68 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..|++.+. ....+ |+|+|
T Consensus 35 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~----~g~af 82 (124)
T 2jwn_A 35 DKRSVYVGNVDYG-STAQDLEAHFSSCGSINRITILCDKFSGHP----KGYAY 82 (124)
T ss_dssp HHTEEEEEEECTT-CCHHHHHHHHHTTSCEEEEEEEEECTTSSC----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCCc----ccEEE
Confidence 3589999999975 999999999999999999998875 33444 77776
No 98
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.78 E-value=2.5e-05 Score=55.71 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCc---ccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGE---IALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~---V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|+.||. |..|+|.+.....+ |+|+|
T Consensus 9 ~~~~~l~V~nLp~~-~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~----~G~af 59 (107)
T 2lmi_A 9 DDVFLIRAQGLPWS-CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKR----RGDAL 59 (107)
T ss_dssp SSCCEEEEECCCSS-CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTT----CSEEE
T ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHhcCCcCCcceEEEEECCCCCE----eeEEE
Confidence 45689999999975 899999999999998 99999988655555 88876
No 99
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=1.1e-05 Score=56.22 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
+.++|||.++|.+ ++.++|+++|++||.|..|++.+.
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~ 40 (98)
T 2cpf_A 4 GSSGLFIKNLNFS-TTEETLKGVFSKVGAIKSCTISKK 40 (98)
T ss_dssp CCCCEEEESCCTT-CCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEec
Confidence 4689999999975 999999999999999999998864
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=3.5e-05 Score=53.66 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=33.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+
T Consensus 15 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~v~~~~ 51 (97)
T 1why_A 15 NPTTRLWVGGLGPN-TSLAALAREFDRFGSIRTIDHVK 51 (97)
T ss_dssp CCCSCEEEECCCSS-CCHHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeC
Confidence 34689999999975 99999999999999999999885
No 101
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=1.2e-05 Score=56.49 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|+.||.|..|++.+.. ...+ |+|+|
T Consensus 7 ~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~----~g~af 54 (104)
T 1p1t_A 7 SLRSVFVGNIPYE-ATEEQLKDIFSEVGPVVSFRLVYDRETGKP----KGYGF 54 (104)
T ss_dssp HHSCEEEESCCTT-SCHHHHHHHHHTTSCCSEEEEEEETTTTEE----EEEEE
T ss_pred CccEEEEeCCCCc-CCHHHHHHHHHhcCCeeEEEEEeCCCCCcc----ceEEE
Confidence 4589999999975 9999999999999999999988753 2233 77765
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=1.9e-05 Score=56.21 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=34.3
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.
T Consensus 23 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASG-LTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSSC-CCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeCC
Confidence 45689999999975 999999999999999999999874
No 103
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=2.4e-05 Score=55.86 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|++||.| .|+|.+.....+ |+|||
T Consensus 13 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~~-~v~i~~d~~g~~----~G~af 59 (102)
T 1wez_A 13 TTGHCVHMRGLPYR-ATENDIYNFFSPLNPM-RVHIEIGPDGRV----TGEAD 59 (102)
T ss_dssp SSSCEEEEESCCTT-CCHHHHHHSSCSCCCS-EEEEEESSSSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHcCce-EEEEEECCCCCE----eeEEE
Confidence 45689999999985 8999999999999954 999887654445 77876
No 104
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=55.24 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=36.0
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.+|||.++|.. ++.++|+++|++||.|..|++.+. + |+|+|
T Consensus 1 ~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~----~----~g~af 41 (101)
T 2hvz_A 1 MKVYVGNLGTG-AGKGELERAFSYYGPLRTVWIARN----P----PGFAF 41 (101)
T ss_dssp CEEEEECCCSS-CSHHHHHHHHHHHCCCSEEEEESS----S----SSEEE
T ss_pred CEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeeC----C----CCEEE
Confidence 47999999975 899999999999999999999875 4 66765
No 105
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=2.5e-05 Score=56.36 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..++|||.++|.+ ++.++|+++|++||.|..|+|.+
T Consensus 9 ~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAG-TLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTT-CCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEeC
Confidence 4579999999975 89999999999999999999875
No 106
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.74 E-value=2.3e-05 Score=62.00 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
.+.+||||.++|.+ +|.++|+++|++||.|..|+|.+... ..+ |+|+|
T Consensus 13 ~p~~tlfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~----~G~af 61 (213)
T 4f02_A 13 YPMASLYVGDLHPD-VTEAMLYEKFSPAGPILSIRVCRDMITRRS----LGYAY 61 (213)
T ss_dssp --CCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhhCCEEEEEEecccCCCCc----ccccc
Confidence 34689999999985 99999999999999999999987533 333 67766
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=3.2e-05 Score=53.14 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.
T Consensus 6 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 6 SGMVKLFIGNLPRE-ATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp SCCEEEEEESCCSS-CCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEE
Confidence 35689999999975 9999999999999999999987
No 108
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.74 E-value=5.5e-05 Score=55.94 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=54.5
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~ 164 (175)
+.+....|++.-....+......|....|-+. ....++|+|.++|.. ++.++|+++|++||.|..|++.+.. ...
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~---~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSA---SIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCG---GGTTCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEEecCCCcc---cCCCCcEEECCCCCc-CCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 56777777764344444422223444332221 234679999999975 8999999999999999999988753 333
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 129 ~----~g~af 134 (167)
T 1fxl_A 129 S----RGVGF 134 (167)
T ss_dssp E----EEEEE
T ss_pred c----cceEE
Confidence 3 66665
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=2.8e-05 Score=55.00 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCc-ccEEEee-CCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGE-IALIRLL-RPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~-V~~Vrl~-r~~~-~~p~~~~~~~~~ 174 (175)
.+.++|||.++|.+ ++.++|+++|++||. |..|++. ++.. ..+ |+|||
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~----~g~af 56 (109)
T 2dis_A 6 SGNCRLFIGGIPKM-KKREEILEEIAKVTEGVLDVIVYASAADKMKN----RGFAF 56 (109)
T ss_dssp CCSEEEEEECCCTT-SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTT----CCEEE
T ss_pred cCCCEEEEeCCCCc-CCHHHHHHHHHHhcCCceEEEEEccCCCCCCc----CcEEE
Confidence 35689999999975 999999999999998 9999987 4332 234 88876
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.71 E-value=2.2e-05 Score=58.05 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.|..|++.+.... ..-|+|||
T Consensus 40 ~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~af 88 (139)
T 1u6f_A 40 DVLRNLMVNYIPTT-VDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGF 88 (139)
T ss_dssp TTTSEEEEESCSTT-CCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEE
Confidence 45689999999975 999999999999999999998875331 12377776
No 111
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=4.3e-05 Score=52.43 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=39.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.| .|..|++.+.....+ |+|||
T Consensus 8 ~~~~~l~v~nLp~~-~t~~~l~~~F~~~-~i~~v~i~~~~~g~~----~g~af 54 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN-VTEKNVMEFLAPL-KPVAIRIVRNAHGNK----TGYIF 54 (91)
T ss_dssp CCCCEEEEECCCSS-CCHHHHHHHHTTS-CCSEEEEEECTTSCE----EEEEE
T ss_pred CCccEEEEECCCCC-CCHHHHHHHHhhC-CceEEEEEECCCCCC----ceEEE
Confidence 45689999999975 9999999999999 999999998744445 77776
No 112
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=3.6e-05 Score=53.76 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCceEEEecCCCCCCCHHHHH----HHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVA----EMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~----~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+ ++|++||.|..|++.+.... |+|+|
T Consensus 8 ~~~~l~V~nL~~~-~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~af 56 (96)
T 2dgx_A 8 NGADVQVSNIDYR-LSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAV 56 (96)
T ss_dssp SCEEEEEESCCTT-SCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEE
Confidence 4579999999975 8999999 99999999999999875432 66766
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.68 E-value=3.3e-05 Score=57.73 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+... ..+ |+|+|
T Consensus 45 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~----~G~af 93 (135)
T 2lea_A 45 EGMTSLKVDNLTYR-TSPDTLRRVFEKYGRVGDVYIPRDRYTKES----RGFAF 93 (135)
T ss_dssp GGCCCEEEECCCSS-CHHHHHHHHHGGGSCCSEEECCCCSSSSSC----CSCCE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEecCCCCcc----ceEEE
Confidence 34689999999975 89999999999999999999987542 333 78876
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=2.6e-05 Score=57.60 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..++|||.++|.+.++.++|+++|++||.|..|+|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~ 60 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 60 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec
Confidence 4689999999973289999999999999999999975
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.68 E-value=4.1e-05 Score=55.03 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=33.6
Q ss_pred CCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 121 ~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
....++|||.++|.+ ++.++|+++|++||.|..|++.
T Consensus 28 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLD-VQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTT-CCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEE
Confidence 345789999999975 8999999999999999999987
No 116
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.68 E-value=3.1e-05 Score=59.20 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|+.||.|..|++.+... ..+ |+|+|
T Consensus 11 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 59 (196)
T 1l3k_A 11 EQLRKLFIGGLSFE-TTDESLRSHFEQWGTLTDCVVMRDPNTKRS----RGFGF 59 (196)
T ss_dssp GGGGEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCEEEEEEEEcCCCCCc----cceEE
Confidence 35689999999985 89999999999999999999887532 334 77776
No 117
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.67 E-value=8.4e-05 Score=60.58 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=55.6
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
+.+....|+..-....+..-...|....+-.........++|||.++|....+.++|+++|++||.|..|++.+.....+
T Consensus 146 ~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~ 225 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL 225 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCE
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCc
Confidence 56667777754444444322223444332222122345689999999975248999999999999999999888654444
Q ss_pred CCCCccCCC
Q psy9843 166 YGNTRHFSF 174 (175)
Q Consensus 166 ~~~~~~~~~ 174 (175)
|+|+|
T Consensus 226 ----~g~af 230 (284)
T 3smz_A 226 ----KGFAV 230 (284)
T ss_dssp ----EEEEE
T ss_pred ----ccEEE
Confidence 77765
No 118
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.67 E-value=4.2e-05 Score=58.60 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|+|.+.. ...+ |+|+|
T Consensus 70 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~----~g~af 118 (165)
T 1rk8_A 70 VEGWILFVTSIHEE-AQEDEIQEKFCDYGEIKNIHLNLDRRTGFS----KGYAL 118 (165)
T ss_dssp C-CEEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTSSE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEEEecCCCCcE----eeEEE
Confidence 45689999999985 9999999999999999999998753 3333 77776
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.66 E-value=5.4e-05 Score=53.21 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=38.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCC-CCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~-~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++|| |..|++.+... ..+ |+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~----~g~af 60 (103)
T 2dng_A 13 EPPYTAYVGNLPFN-TVQGDIDAIFKDLS-IRSVRLVRDKDTDKF----KGFCY 60 (103)
T ss_dssp SSCEEEEEESCCTT-CCHHHHHHHTTTSC-EEEEEEEECSSSCSE----EEEEE
T ss_pred CCCeEEEEeCCCCC-CCHHHHHHHHHhCC-ceEEEEeecCCCCcc----ceEEE
Confidence 35689999999975 99999999999998 99999987643 333 77776
No 120
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=5e-05 Score=52.92 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=32.4
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
...++|||.++|...++.++|+++|++||.|..|++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 4568999999996248999999999999999999995
No 121
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.66 E-value=2.5e-05 Score=53.89 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=36.3
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCC--cccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCG--EIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G--~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
.||||.++|.+ ++.++|+++|++|| .|..|++.+.. ...+ |+|+|
T Consensus 2 ~~l~V~nL~~~-~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~----kG~af 49 (90)
T 3p5t_L 2 IALYIGNLTWW-TTDEDLTEAVHSLGVNDILEIKFFENRANGQS----KGFAL 49 (90)
T ss_dssp --CEEESCCTT-CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCE----EEEEE
T ss_pred eEEEEeCCCCC-CCHHHHHHHHHHhCCCceEEEEEEecCCCCcc----CcEEE
Confidence 48999999975 89999999999999 99999988753 3334 77776
No 122
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.66 E-value=4.3e-05 Score=58.15 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|++|| |..|+|.+.....+ |+|+|
T Consensus 44 ~~~~~lfV~nLp~~-~te~dL~~~F~~~G-i~~v~i~~d~~g~s----rGfaF 90 (139)
T 2hgn_A 44 TTGHCVHMRGLPYK-ATENDIYNFFSPLN-PVRVHIEIGPDGRV----TGEAD 90 (139)
T ss_dssp -CCCCEECCSCCTT-CCHHHHHHHHCSCC-CSEEECCCSSSSCS----SCCCE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcC-CeEEEEEECCCCCC----ceEEE
Confidence 34689999999985 99999999999999 77999988655556 88887
No 123
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.64 E-value=4.9e-05 Score=58.92 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ +|.++|+++|+.||.|..|++.+.. ...+ |+|+|
T Consensus 27 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~----~g~af 74 (216)
T 2qfj_A 27 IMSRVYVGSIYYE-LGEDTIRQAFAPFGPIKSIDMSWDSVTMKH----KGFAF 74 (216)
T ss_dssp HHTEEEEECCCTT-CCHHHHHHHHGGGSCEEEEEECCC-CC-CC----CSEEE
T ss_pred cCCEEEEECCCCC-CCHHHHHHHHHhCCCEEEEEEeecCCCCcc----CceEE
Confidence 3579999999985 9999999999999999999998754 3334 77776
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.64 E-value=6e-05 Score=53.00 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=32.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
...++|||.++|...++.++|+++|++||.|..|++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 4578999999996248999999999999999999994
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.63 E-value=4.1e-05 Score=57.97 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCc---ccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGE---IALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~---V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ +|.++|+++|++||. |..|+|.+....-+ |+|+|
T Consensus 42 ~~~~~lfVgnLp~~-~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~s----rG~aF 92 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS-CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQ----SGEAF 92 (136)
T ss_dssp CTTCEEEEESCCTT-CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCE----EEEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcCceeEEEEEECCCCCC----CeEEE
Confidence 34689999999985 899999999999999 89999987655556 88876
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=6.9e-05 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=32.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..++|||.++|.. ++.++|+++|+.||.|..|++.+
T Consensus 26 ~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 26 RVTTAYIGNIPHF-ATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp SCCEEEEESCCTT-CCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCEEEEcCCCcc-cCHHHHHHHHHhCCCEEEEEEec
Confidence 4589999999975 89999999999999999999984
No 127
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=3.4e-05 Score=55.39 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCCHHHHH---HHhccCCcccEEEeeCCCCC-CCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVA---EMFKPCGEIALIRLLRPGKY-TKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~---~~F~~~G~V~~Vrl~r~~~~-~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|. ++|++||.|..|++.+.... .. .--|+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~-~~~~G~af 67 (111)
T 2cpi_A 13 VQKNLVFVVGLSQR-LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS-QGPSASAY 67 (111)
T ss_dssp CCSSCEEEEEECTT-TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSS-SCCCEEEE
T ss_pred cCCCEEEEECCCCC-CCHHHHHHHHHHhhccCCEEEEEEecCCCcCcc-CCCCeEEE
Confidence 45689999999985 8999999 99999999999999875432 11 12267876
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.60 E-value=3.3e-05 Score=58.02 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+. + |+|+|
T Consensus 71 ~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~----~----~g~af 114 (150)
T 2i2y_A 71 PLDCKVYVGNLGNN-GNKTELERAFGYYGPLRSVWVARN----P----PGFAF 114 (150)
T ss_dssp TTSCEEEEESCCSC-CSCHHHHHHHHHHSCEEEEEECSS----S----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCEEEEEEeeC----C----CcEEE
Confidence 45689999999975 899999999999999999999874 3 67766
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.60 E-value=6.4e-05 Score=53.55 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEe
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl 157 (175)
...++|||.++|...++.++|+++|++||.|..|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 345899999999632899999999999999999999
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.59 E-value=6.5e-05 Score=56.51 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 68 ~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~----~g~af 116 (158)
T 2kn4_A 68 EGMTSLKVDNLTYR-TSPDTLRRVFEKYGRVGDVYIPRDRYTKES----RGFAF 116 (158)
T ss_dssp CBCCEEEEESCCTT-CCHHHHHHHHHHHSCEEEEECCCCSSCTTS----CCEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEeecCCCCcc----ceEEE
Confidence 34689999999975 9999999999999999999998753 3344 78876
No 131
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.58 E-value=2.6e-05 Score=53.76 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..+++.+. ....+ |+|+|
T Consensus 14 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~----~g~af 61 (95)
T 2ek1_A 14 GPTVIKVQNMPFT-VSIDEILDFFYGYQVIPGSVCLKYNEKGMP----TGEAM 61 (95)
T ss_dssp -CEEEEEECCCTT-CCHHHHHHHTTTSCBCTTCCEEEECTTSCE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCccceEEEEeCCCCCE----eeEEE
Confidence 3589999999975 999999999999999987776653 22333 67765
No 132
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.58 E-value=8.1e-05 Score=58.30 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.++|||.++|.. ++.++|+++|+.||.|..|++.+.....+ |+|||
T Consensus 88 ~~~l~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~g~~----kG~af 133 (177)
T 2f3j_A 88 GAKLLVSNLDFG-VSDADIQELFAEFGTLKKAAVDYDRSGRS----LGTAD 133 (177)
T ss_dssp CEEEEEECCCSC-CCHHHHHHHHHHTSCCSEEEECCCTTSSC----SCCEE
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEECCCCCE----eeEEE
Confidence 579999999975 99999999999999999999988654444 78876
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=3.9e-05 Score=57.20 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcc----cEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEI----ALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V----~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ +|.++|+++|++||.| ..|+|.+....-| |+|+|
T Consensus 22 ~~~~v~V~nLp~~-~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~----~G~aF 72 (123)
T 2dha_A 22 NQVIVRMRGLPFT-ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRP----TGDAF 72 (123)
T ss_dssp SCCEEEECSCCTT-CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhCCccCCcceEEEEECCCCCE----eeEEE
Confidence 4579999999975 9999999999999975 6899887644445 78876
No 134
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.56 E-value=0.00016 Score=55.31 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+.. ...+ |+|+|
T Consensus 113 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~----~g~af 160 (198)
T 2yh0_A 113 SAHKLFIGGLPNY-LNDDQVKELLTSFGPLKAFNLVKDSATGLS----KGYAF 160 (198)
T ss_dssp CCCEEEEECCCTT-CCHHHHHHHHHTBSCEEEEEEEECTTTCSE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHcCCccEEEEeecCCCCCc----ceEEE
Confidence 4589999999975 8999999999999999999988753 3444 67765
No 135
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=7.3e-05 Score=54.54 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE-EEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL-IRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~-Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.|.. +.+.......+ |+|||
T Consensus 23 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~~~~~~~~~~g~~----~G~af 71 (124)
T 1wel_A 23 EAGFCVYLKGLPFE-AENKHVIDFFKKLDIVEDSIYIAYGPNGKA----TGEGF 71 (124)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHSCSSCBCTTTCEEEECTTSSE----EEEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHhcCCccceEEEEECCCCCC----CeEEE
Confidence 34689999999975 999999999999999976 45554444444 77776
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=9.1e-05 Score=52.76 Aligned_cols=37 Identities=14% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..++|||.++|.+ ++.++|+++|++||.|..|++.++
T Consensus 14 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPS-GSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCCEEEEESCCSS-CCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEeEEEEecC
Confidence 4689999999975 999999999999999999999874
No 137
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=9.1e-05 Score=51.73 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|++||.| ++.+.....+ |+|+|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v---~~~~~~~g~~----~g~af 57 (101)
T 2fc9_A 13 GESKTLVLSNLSYS-ATEETLQEVFEKATFI---KVPQNQNGKS----KGYAF 57 (101)
T ss_dssp CCCSEEEEESCCTT-CCHHHHHHHCSSCSEE---ECCBCSSSCB----CSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhCCEE---EEEECCCCCE----eeEEE
Confidence 45789999999985 9999999999999987 5554433333 77776
No 138
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=0.00011 Score=53.48 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|+|.++|.+ ++.++|+++|++| .|..|+|.+....-+ |+|+|
T Consensus 15 ~~~~v~V~nLp~~-~te~dl~~~F~~~-~v~~v~i~~d~~g~~----~G~af 60 (109)
T 2dnn_A 15 DDLYVSVHGMPFS-AMENDVRDFFHGL-RVDAVHLLKDHVGRN----NGNGL 60 (109)
T ss_dssp HHHEEEEECCCSS-CCHHHHHHHTTTS-CCCEEEECCCTTCCC----CSEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHhccC-CeeEEEEEECCCCCC----CeEEE
Confidence 3579999999985 9999999999999 899999988655555 88887
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.52 E-value=6.1e-05 Score=53.01 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=32.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+
T Consensus 10 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 10 KVKVLFVRNLANT-VTEEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCCEEEECCCTT-CCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCEEEEEEEC
Confidence 4689999999975 99999999999999999999874
No 140
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.49 E-value=7.7e-05 Score=57.37 Aligned_cols=47 Identities=4% Similarity=0.082 Sum_probs=38.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCC--cccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCG--EIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G--~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|+.|| .|..|++.+.. ...+ |+|+|
T Consensus 54 ~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~s----kGfaF 103 (156)
T 3n9u_C 54 RRAAVYVGSFSWW-TTDQQLIQVIRSIGVYDVVELKFAENRANGQS----KGYAE 103 (156)
T ss_dssp --CEEEEECCCTT-CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHCCccEEEEEEEecCCCCcc----ceEEE
Confidence 3579999999975 89999999999999 99999988753 3334 88877
No 141
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.49 E-value=7.3e-05 Score=55.66 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~ 164 (175)
+.+....|++.. ..+ +|..|+-....+.. .....++|||.++|.. ++.++|+++|++||.|..|++.+.. ...
T Consensus 54 ~~~~a~~A~~~~--~~~--~g~~i~v~~~~~~~-~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~~~i~~~~~~g~ 127 (167)
T 2cjk_A 54 KPSSVDEVVKTQ--HIL--DGKVIDPKRAIPRD-EQDKTGKIFVGGIGPD-VRPKEFEEFFSQWGTIIDAQLMLDKDTGQ 127 (167)
T ss_dssp STHHHHHHHHSC--CEE--TTEECCCEECCCHH-HHHHCEEEEEEEECTT-CCHHHHHHHHHTTSCCSEEECCCSSSSST
T ss_pred cHHHHHHHHhcc--ccc--CCeEcccccccchh-hccCCCeEEECCCCCC-CCHHHHHHHHHhCccEEEEEEEEcCCCCc
Confidence 566677788752 233 34444322121111 1123579999999975 8999999999999999999998763 344
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 128 ~----~g~af 133 (167)
T 2cjk_A 128 S----RGFGF 133 (167)
T ss_dssp T----SEEEE
T ss_pred c----ceEEE
Confidence 4 77776
No 142
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.48 E-value=0.0002 Score=58.58 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=53.9
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCC----CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD----QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~----~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
+.+....|++.-....+..-...|+...|-.... .....++|||.++|...++.++|+++|++||.|..|++.+..
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 4566677776433344432112344333322211 123468999999996328999999999999999999999865
Q ss_pred C--CCCCCCCccCCC
Q psy9843 162 K--YTKYGNTRHFSF 174 (175)
Q Consensus 162 ~--~~p~~~~~~~~~ 174 (175)
. ..+ |+|+|
T Consensus 248 ~~tg~~----~g~af 258 (292)
T 2ghp_A 248 KEHSFN----NCCAF 258 (292)
T ss_dssp C---CC----CEEEE
T ss_pred CcCCCC----ceEEE
Confidence 4 555 77776
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.47 E-value=7.7e-05 Score=50.40 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccC----C-------cccEEEeeCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPC----G-------EIALIRLLRP 160 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~----G-------~V~~Vrl~r~ 160 (175)
...++|||.++|.+ ++.++|+++|++| | .|..+++.++
T Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFG-ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTT-CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 35689999999975 8999999999999 8 8999998863
No 144
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.47 E-value=0.00012 Score=54.67 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCceEEEecCCCCCCCHHHHH----HHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVA----EMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~----~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. ++.++|+ ++|++||.|..|++.+.+ -+ |+|||
T Consensus 28 p~~~LfV~nL~~~-~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--~~----rG~aF 76 (127)
T 2a3j_A 28 PSQVVLITNINPE-VPKEKLQALLYALASSQGDILDIVVDLSD--DN----SGKAY 76 (127)
T ss_dssp CCSEEEEESCCTT-SCHHHHHHHHHHHHHHHSCEEEEEECCCC--SS----CCCEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHhccCCCeEEEEeccCC--Cc----CCEEE
Confidence 4689999999975 8888765 799999999999987633 23 88887
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.46 E-value=4.2e-05 Score=52.89 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCCceEEEecCCCCCCCHHHHH----HHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVA----EMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~----~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.+ ++.++|+ ++|++||.|..|++.+
T Consensus 6 ~~~~~l~V~nLp~~-~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 6 RPNHTIYINNLNEK-IKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp CCCSEEEEESCCTT-SCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 35689999999975 8999999 9999999999999875
No 146
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=5e-05 Score=52.69 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=36.6
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC-CCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP-GKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~-~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++||.|..+++.+. ....+ |+|||
T Consensus 14 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~----~g~af 61 (98)
T 2cqp_A 14 GPTIIKVQNMPFT-VSIDEILDFFYGYQVIPGSVCLKYNEKGMP----TGEAM 61 (98)
T ss_dssp SSEEEEEESCCTT-CCHHHHHHHTTTSCCCTTTCEEEECSSSCE----EEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHcCCccceEEEEECCCCCe----eeEEE
Confidence 4589999999975 999999999999999986665543 33334 67765
No 147
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=0.00022 Score=48.97 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=33.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.. ++.++|+++|++||.|..|++.+
T Consensus 8 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 8 KASTKLHVGNISPT-CTNQELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp CSSEEEEEESCCSS-CCHHHHHHHHHTTSCCCEEEECS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEEC
Confidence 45689999999975 89999999999999999999874
No 148
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00011 Score=56.54 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=38.8
Q ss_pred ceEEEecC----CCCCCCHHHHHHHhccCCcccEEEeeC-CCCCCCCCCCccCCC
Q psy9843 125 RTIVAINI----PPESATIELVAEMFKPCGEIALIRLLR-PGKYTKYGNTRHFSF 174 (175)
Q Consensus 125 rtv~v~~~----p~~~~t~e~i~~~F~~~G~V~~Vrl~r-~~~~~p~~~~~~~~~ 174 (175)
..|||.++ |.. ++.++|+++|++||+|..+++.. |....| |+|+|
T Consensus 3 ~kI~VgnL~~~~~~~-tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s----lGfgf 52 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTN-IQDISIKNYFKKYGEISHFEAFNDPNSALP----LHVYL 52 (136)
T ss_dssp CEEEEEESSSSCCCC-CCHHHHHHHHHTTSCCSEEEEEECTTTCCE----EEEEE
T ss_pred cEEEEeCCCCCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCce----eeEEE
Confidence 47999999 875 89999999999999999999665 566677 88876
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.55 E-value=2e-05 Score=56.70 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE--------EEeeCCC-CCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL--------IRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~--------Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
.+.++|||.++|.+ ++.++|+++|++||.|.. |++.+.. ...+ |+|||
T Consensus 5 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~----~g~af 61 (116)
T 2lcw_A 5 SDNNTIFVQGLGEN-VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL----KGEAT 61 (116)
Confidence 45689999999975 899999999999999998 8887752 2333 77776
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=0.00021 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=32.5
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccC--CcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPC--GEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~--G~V~~Vrl~r 159 (175)
...++|||.++|.. ++.++|+++|++| |.|..|++.|
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 13 SSVKILYVRNLMLS-TSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp SCCCEEEEESCCTT-CCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred CCcCEEEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEEeC
Confidence 45689999999975 9999999999999 8999888753
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00019 Score=49.14 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.+ ++.++|+++|++||.|..|++.+
T Consensus 7 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA-CTSQELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp CCSCCEEEESCCTT-CCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCEEEEEEEC
Confidence 45689999999985 99999999999999999999985
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.38 E-value=0.0002 Score=53.62 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCccc--EEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIA--LIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~--~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ +|.++|+++|++| .|. .|+|.+....-+ |+|+|
T Consensus 41 ~~~~lfVgnLp~~-~te~dL~~~F~~~-~i~~~~v~i~~d~~Grs----rGfaF 88 (126)
T 2hgm_A 41 NDGFVRLRGLPFG-CTKEEIVQFFSGL-EIVPNGITLPVDPEGKI----TGEAF 88 (126)
T ss_dssp SCCEEEEECCCTT-CCHHHHHHHTTTS-CEEEEEEECCCCSSSSS----CSEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcC-CceeeEEEEEECCCCCC----ceEEE
Confidence 4679999999985 9999999999999 566 899988655556 88887
No 153
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.37 E-value=0.00017 Score=51.31 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcc----cEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEI----ALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V----~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.| ..+++. ... -|+|||
T Consensus 23 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~----~~g~af 71 (115)
T 2cpx_A 23 EPNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMM---TGR----MRGQAF 71 (115)
T ss_dssp SCCSEEEEECCCTT-CCHHHHHHHTHHHHHSSSSCCEEEEE---CSS----SCSEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCccceEEEEEcC---CCc----cceEEE
Confidence 35689999999975 9999999999999999 555555 222 367776
No 154
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.37 E-value=0.00025 Score=57.79 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=52.8
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
+.+....|+..-....+. |..|+-.. ....++|||.++|.. +|.++|+++|+.||.|..|++.+.....+
T Consensus 67 ~~~~A~~A~~~l~g~~i~--g~~l~v~~-------a~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 136 (261)
T 3sde_A 67 SRTLAEIAKAELDGTILK--SRPLRIRF-------ATHGAALTVKNLSPV-VSNELLEQAFSQFGPVEKAVVVVDDRGRA 136 (261)
T ss_dssp SHHHHHHHHHHHTTCEET--TEECEEEE-------CCCSSEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETTSCE
T ss_pred CHHHHHHHHHHcCCcEEC--CceeEeee-------cccCCcccccCCCCC-CCHHHHHHHHHhcCCeEEEEeeeCCCCCc
Confidence 566677777643333443 43333211 123579999999975 89999999999999999999988754444
Q ss_pred CCCCccCCC
Q psy9843 166 YGNTRHFSF 174 (175)
Q Consensus 166 ~~~~~~~~~ 174 (175)
|+|+|
T Consensus 137 ----~g~af 141 (261)
T 3sde_A 137 ----TGKGF 141 (261)
T ss_dssp ----EEEEE
T ss_pred ----CcEEE
Confidence 77776
No 155
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.36 E-value=0.0002 Score=52.64 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=31.5
Q ss_pred EEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 108 KIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 108 ~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
..+|..+.+........++|||.++ .++.++|+++|++||.|..|++.
T Consensus 23 ~~~r~~~~~~~~~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 23 PFRRSDSFPERRAPRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp ------------CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEe
Confidence 4556666666554456789999995 38999999999999999999996
No 156
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00018 Score=50.03 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
...++|||.++|.. ++.++|+++|++||.|. +++.
T Consensus 17 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~v~-~~~~ 51 (97)
T 2e5j_A 17 PLAADVYVGNLPRD-ARVSDLKRALRELGSVP-LRLT 51 (97)
T ss_dssp CCCCEEEEECCCTT-CCHHHHHHHHHHTTCCC-SEEE
T ss_pred CCCCEEEEeCCCCc-CcHHHHHHHHHhcCCEE-EEEE
Confidence 34689999999975 99999999999999996 5655
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.30 E-value=0.00024 Score=55.01 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCC--------CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEe
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD--------QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~--------~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl 157 (175)
+.+....|++.-....+......|.+-.+..... .....++|||.++|.+ ++.++|+++|++||.|..|++
T Consensus 79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 79 VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQD-LSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp SHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTT-CCHHHHHHHHTTSSCEEEEEE
T ss_pred CHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCc-CCHHHHHHHHhccCCeeEEEE
Confidence 5677777777433333332223343322211100 1134579999999975 999999999999999999999
Q ss_pred eCCCC-CCCCCCCccCCC
Q psy9843 158 LRPGK-YTKYGNTRHFSF 174 (175)
Q Consensus 158 ~r~~~-~~p~~~~~~~~~ 174 (175)
.+... ..+ |+|+|
T Consensus 158 ~~~~~~g~~----~g~af 171 (216)
T 2qfj_A 158 ARDPTTGKH----KGYGF 171 (216)
T ss_dssp EECTTTCCE----EEEEE
T ss_pred EecCCCCCc----CceEE
Confidence 87532 233 66665
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.29 E-value=0.00019 Score=57.25 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
...++|||.++|...++.++|+++|+.||.|..|++.+..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 3568999999997248999999999999999999998743
No 159
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.23 E-value=0.00025 Score=51.83 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCC-cccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCG-EIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G-~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..++|||.++|.+ ++.++|+++|++|| .|..+++... -+ |+|+|
T Consensus 27 ~~~~l~VgnLp~~-~te~dL~~~F~~~G~~v~~v~i~~~---~~----rGfaF 71 (111)
T 2jvr_A 27 KRYRITMKNLPEG-CSWQDLKDLARENSLETTFSSVNTR---DF----DGTGA 71 (111)
T ss_dssp CCEEEEEECSSCC-CCHHHHHHHHHHHTCCCSEEECSSC---SS----SCCEE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhCCeeEEEEEEcC---CC----CCEEE
Confidence 3579999999975 89999999999999 8999998631 13 77876
No 160
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.23 E-value=0.00037 Score=56.75 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=33.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
...++|||.++|.+ +|.++|.++|++||.|..|++.+
T Consensus 20 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~ 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTD-ITEEDFKRLFERYGEPSEVFINR 56 (261)
T ss_dssp CGGGEEEEESCCTT-CCHHHHHHHTGGGCCCSEEEEET
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHhcCCEEEEEEeC
Confidence 45689999999985 89999999999999999999976
No 161
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.21 E-value=0.00026 Score=57.57 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCC--cccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCG--EIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G--~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.++|.. +|.++|+++|+.|| .|..|+|.+.. ...+ |+|+|
T Consensus 67 ~~~~lfVgnL~~~-~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~s----kGfaF 116 (229)
T 3q2s_C 67 KRIALYIGNLTWW-TTDEDLTEAVHSLGVNDILEIKFFENRANGQS----KGFAL 116 (229)
T ss_dssp --CEEEEESCCTT-CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCE----EEEEE
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHHHCCcceEEEEEEecCCCCcc----ceEEE
Confidence 4579999999975 99999999999999 99999998753 3334 78876
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.19 E-value=0.00016 Score=57.08 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCC-CCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD-QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~-~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~ 164 (175)
+.+....|++......+. |..+|-...-+... .....++|||.++|.. ++.++|+++|++||.|..|++.+... .
T Consensus 66 ~~~~A~~Ai~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~d~~-~ 141 (213)
T 4f02_A 66 QPADAERALDTMNFDVIK--GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKS-IDNKALYDTFSAFGNILSCKVVCDEN-G 141 (213)
T ss_dssp SHHHHHHHHHHHTTCEET--TEECEEEECCCCTHHHHHCTTEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEEETT-E
T ss_pred CHHHHHHHHHHhhhhhcC--CcccccccccccccccccccccceECCcccc-cHHHHHHHHHhhcCCeEEEEeeccCC-C
Confidence 567777777654433333 44444322221111 1123578999999975 99999999999999999999887422 1
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 142 ~----~g~~f 147 (213)
T 4f02_A 142 S----KGYGF 147 (213)
T ss_dssp E----EEEEE
T ss_pred C----ceEEE
Confidence 3 77776
No 163
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.17 E-value=0.00077 Score=55.01 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCC-cccEEEeeCCCCCC
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCG-EIALIRLLRPGKYT 164 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G-~V~~Vrl~r~~~~~ 164 (175)
+.+....|+. -....+..-...|.. ...++|||.++|.. ++.++|.++|+.|| .|..|++.+.....
T Consensus 90 ~~~~A~~A~~-~~~~~~~g~~i~v~~----------~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~i~~v~i~~~~~~~ 157 (292)
T 2ghp_A 90 RYDGALAAIT-KTHKVVGQNEIIVSH----------LTECTLWMTNFPPS-YTQRNIRDLLQDINVVALSIRLPSLRFNT 157 (292)
T ss_dssp SHHHHHHHHT-TTTCEETTEECEEEE----------CCSCEEEEECCCTT-CCHHHHHHHHHHTTCCCCEEECC------
T ss_pred CHHHHHHHHH-hCCcEeCCcEEEEEE----------CCCCEEEEECCCCC-CCHHHHHHHHHHhCCCeEEEEEEeCCCCC
Confidence 6777888885 333444321122322 24689999999985 89999999999999 99999998865544
Q ss_pred CCCCCccCCC
Q psy9843 165 KYGNTRHFSF 174 (175)
Q Consensus 165 p~~~~~~~~~ 174 (175)
+ |+|+|
T Consensus 158 ~----~g~af 163 (292)
T 2ghp_A 158 S----RRFAY 163 (292)
T ss_dssp -----CCEEE
T ss_pred c----ceEEE
Confidence 4 77775
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.16 E-value=0.00019 Score=51.85 Aligned_cols=37 Identities=14% Similarity=0.422 Sum_probs=32.2
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..++|||.++|.+ ++.++|+++|++||.|..|+|.++
T Consensus 15 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPS-GSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSS-CCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHhcCCeEEEEEecC
Confidence 3578999999975 899999999999999999999764
No 165
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00073 Score=46.83 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
...++|||.++ .++.++|+++|++||.|..|++.
T Consensus 13 ~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEec
Confidence 35689999995 48999999999999999999995
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.15 E-value=0.00098 Score=50.01 Aligned_cols=66 Identities=24% Similarity=0.284 Sum_probs=45.0
Q ss_pred CHHHHHHHHhcCCceEEeecCcEEEeCCCCCCC-CCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEE
Q psy9843 86 DWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALI 155 (175)
Q Consensus 86 d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~-~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~V 155 (175)
+.+....|++ -....+. |..|+=..+-+.. ......++|||.++|.. ++.++|+++|++||.|..+
T Consensus 63 ~~~~a~~A~~-l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 63 SAEDLEKALE-LTGLKVF--GNEIKLEKPKGRDSKKVRAARTLLAKNLSFN-ITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp SHHHHHHHHH-GGGEEET--TEEEEEECCCCSSCSTTGGGGEEEEESCCSS-CCHHHHHHHCTTCSEEEEE
T ss_pred CHHHHHHHHh-cCCCEeC--CeEEEEecCCCccccccccCCEEEEeCCCCC-CCHHHHHHHHHhcCeEEEe
Confidence 5777788885 4445555 4444422222111 12245689999999975 8999999999999998777
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00081 Score=46.34 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEE
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vr 156 (175)
..++|||.++|.+ ++.++|+++|++||.|..|.
T Consensus 7 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~ 39 (94)
T 2e5g_A 7 GLRSVFVSGFPRG-VDSAQLSEYFLAFGPVASVV 39 (94)
T ss_dssp TCCEEEEECCCTT-CCHHHHHHHGGGTSCEEEEE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHhcCCeEEEE
Confidence 4579999999975 99999999999999999883
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.00036 Score=51.78 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL 154 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~ 154 (175)
...++|||.++|.. +|.++|+++|++||.|..
T Consensus 43 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 43 EPNCRIYVKNLAKH-VQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp SCCSEEEEEEECTT-CCHHHHHHHHGGGCCTTC
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCccc
Confidence 45689999999975 999999999999999876
No 169
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.08 E-value=5.6e-05 Score=52.83 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=35.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC-CCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR-PGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r-~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.. ++.++|+++|+.||.|.. ++.+ .....+ |+|+|
T Consensus 15 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~----~g~af 62 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN-KSVAELKVAISELFAKND-LAVVDVRTGTN----RKFGY 62 (101)
T ss_dssp SCSEEEEEECCCTT-SCHHHHHHHHHHHHHHHT-CCCCEEEEETT----TTEEE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHhCCcce-EEEecCCCCCc----CcEEE
Confidence 45789999999975 999999999999999877 3332 222334 77776
No 170
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.07 E-value=0.00013 Score=50.31 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEE
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALI 155 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~V 155 (175)
...++|||.++|.. ++.++|+++|+.||.|..+
T Consensus 14 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLSFN-ITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCCSS-CCHHHHHHHHCSEEEECCE
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhhCCcEEEe
Confidence 45689999999975 8999999999999998877
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00023 Score=48.86 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.9
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCc-ccEEEee
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGE-IALIRLL 158 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~-V~~Vrl~ 158 (175)
...++|||.++|.+ ++.++|+++|++||. |..+.+.
T Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 6 SGMNKLYIGNLSPA-VTADDLRQLFGDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCCEEEECCCTT-CCHHHHHHHHHHTTCCCSSCEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHcCCceEEEEEc
Confidence 34689999999975 899999999999999 7777664
No 172
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.04 E-value=0.00031 Score=50.29 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=36.3
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.-.|||.+++.. +|.+.|+++|.+||+|..+++.. | |+|+|
T Consensus 7 ~~wL~VgNL~~~-~te~~L~~lF~q~G~V~~~~l~~-----~----kGfaF 47 (89)
T 2wbr_A 7 SSWLLLKNLTAQ-IDGPTLRTLCMQHGPLVSFHPYL-----N----QGIAL 47 (89)
T ss_dssp CCEEEEECCCTT-CCCHHHHHHHHHHSCEEEEEEET-----T----TTEEE
T ss_pred cceEEEeCCCcc-CCHHHHHHHHHhhCCEEEEEEcC-----C----CcEEE
Confidence 347999999986 89999999999999999999865 5 88887
No 173
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.04 E-value=0.00052 Score=46.89 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEee
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLL 158 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~ 158 (175)
..++|||.++|.+ ++.++|+++|++| .|..|++.
T Consensus 4 ~~~~l~V~nLp~~-~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 4 GSSGILVKNLPQD-SNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCEEEESCCSS-CCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhhC-CeEEEEEe
Confidence 4589999999975 8999999999999 99999985
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.02 E-value=0.00052 Score=60.98 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~~p~~~~~~~~~ 174 (175)
..++|||.+||.. +|.++|.++|+.||.|..|.|.... ...+ ++|||
T Consensus 101 ~~~~lfV~nL~~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~----kG~aF 148 (437)
T 3pgw_S 101 AFKTLFVARVNYD-TTESKLRREFEVYGPIKRIHMVYSKRSGKP----RGYAF 148 (437)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHcCCeeEEEeeccCCCCCc----cceEE
Confidence 4579999999975 8999999999999999999998753 3334 88887
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00032 Score=51.97 Aligned_cols=42 Identities=12% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCceEEE--ecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVA--INIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v--~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+.++||| -+++.. ++.++|+++|++||.|..|.|+. . |+|+|
T Consensus 24 pt~~L~V~Ng~L~~~-~te~~L~~~F~~fG~v~~v~i~~-----~----rgfaF 67 (114)
T 2cq2_A 24 ATQSLVVANGGLGNG-VSRNQLLPVLEKCGLVDALLMPP-----N----KPYSF 67 (114)
T ss_dssp CCSEEEEETCTGGGT-CCHHHHHHHHHHHSCEEEEECCT-----T----CSCEE
T ss_pred CCCEEEEECCCCCCC-CCHHHHHHHHHhcCCeEEEEEeC-----C----CCEEE
Confidence 4689999 458864 89999999999999999999863 1 77876
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.94 E-value=0.0017 Score=52.72 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCHHHHHHHHhcCCceEEeecCcEEEeCCCCCCCCCCCCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC-CC
Q psy9843 85 KDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG-KY 163 (175)
Q Consensus 85 ~d~~~i~~Al~~S~~lev~edg~~VRR~~plp~~~~~~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~-~~ 163 (175)
.+.+....|+..-....+. |..|+=.. ....++|||.++|.. ++.++|.++|++||.|..|++.+.. ..
T Consensus 65 ~~~~~A~~A~~~l~~~~~~--g~~i~v~~-------~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLR--ERELSVQL-------QPTDALLCVANLPPS-LTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp SSHHHHHHHHHHHTTCEET--TEECEEEE-------CCCSCEEEEESCCTT-CCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHHHHcCCCeeC--CeEEEEEe-------cCCCCEEEEcCCCCc-CCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 3577778888654434444 33332110 123579999999975 8999999999999999999987653 33
Q ss_pred CCCCCCccCCC
Q psy9843 164 TKYGNTRHFSF 174 (175)
Q Consensus 164 ~p~~~~~~~~~ 174 (175)
.+ |+|+|
T Consensus 135 ~~----~g~af 141 (284)
T 3smz_A 135 QS----KGYGF 141 (284)
T ss_dssp CE----EEEEE
T ss_pred cc----ceEEE
Confidence 34 66665
No 177
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00058 Score=47.01 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEE-eeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIR-LLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vr-l~r~ 160 (175)
..++|||.++|.. ++.++|+++|++||.|..|+ +.+.
T Consensus 14 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~i~~~ 51 (96)
T 2e44_A 14 RIRKLQIRNIPPH-LQWEVLDSLLVQYGVVESCEQVNTD 51 (96)
T ss_dssp SCCCEEEEEECSS-SCHHHHHHHHHHHSCEEEEEEECCS
T ss_pred CCCEEEEEcCCCC-CCHHHHHHHHHhcCCeEEEEEeecC
Confidence 4689999999975 89999999999999999996 6653
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.87 E-value=0.0012 Score=53.52 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..++|||.++|.. ++.++|+++|++||.|..|++.+.
T Consensus 206 ~~~~l~v~nl~~~-~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 206 PNHILFLTNLPEE-TNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCEEEEeCCCCc-CCHHHHHHHHHhcCCeEEEEEecC
Confidence 4689999999975 899999999999999999999853
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.73 E-value=0.00089 Score=53.24 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=32.4
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcc--cEEEeeCC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEI--ALIRLLRP 160 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V--~~Vrl~r~ 160 (175)
.++|||.++|.+ +|.++|+++|++||.| ..|++.+.
T Consensus 123 ~~~l~v~NLp~~-~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 123 SNVLHFFNAPLE-VTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CSEEEEEEECTT-CCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred cceEEEeCCCCC-CCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 468999999975 9999999999999999 89998764
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.73 E-value=0.0015 Score=50.17 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=32.5
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCC-cccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCG-EIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G-~V~~Vrl~r 159 (175)
..++|||.++|.. ++.++|+++|++|| .|..|++.+
T Consensus 119 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 119 PSATLHLSNIPPS-VSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCEEEECCCCTT-CCHHHHHHHHHHTTSCCCEEEESS
T ss_pred CccEEEEeCCCCC-CCHHHHHHHHHHcCCCceEEEEEe
Confidence 3689999999975 89999999999999 999999864
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.69 E-value=0.0056 Score=48.60 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=32.0
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCC-cccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCG-EIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G-~V~~Vrl~r 159 (175)
.++|||.++|.+ ++.++|+++|++|| .|..|++.+
T Consensus 151 ~~~l~V~nlp~~-~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPS-VSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTT-CCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCcc-CCHHHHHHHHHHcCCCeeEEEEEE
Confidence 589999999975 89999999999999 999999854
No 182
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.62 E-value=0.001 Score=52.33 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.2
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
..+|||.+++.. +|.++|+++|++||.|..|++..
T Consensus 46 vl~l~VgNL~~~-vted~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 46 VLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp EEEEEECSCCSC-CCHHHHHHHHHHHSCEEEEEEEE
T ss_pred eEEEEEeCcCCC-CCHHHHHHHHHhcCCEEEEEEEe
Confidence 357999999975 99999999999999999999863
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.62 E-value=0.0024 Score=45.86 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=36.3
Q ss_pred CCceEEEecCCCC----CCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPPE----SATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~~----~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
..|+|++.++... +-+.++|++.|++||+|..|+++++.... +.-|+|+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~--~~~~G~~F 60 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP--DDEAVRIF 60 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC--TTTSEEEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC--CCCcEEEE
Confidence 4689999998631 13678999999999999999998753211 12377776
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.59 E-value=0.00095 Score=55.33 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCCceEEEecCCCCCC---------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESA---------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~---------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...+||||-++|.+ + +.++|+++|++||.|..|++.+ + |+|||
T Consensus 132 ~~~rtLfVgnL~~~-~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~----kG~AF 183 (240)
T 3u1l_A 132 KKNKTLYVGGIDGA-LNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----S----KNCGF 183 (240)
T ss_dssp CCCCEEEEECTTGG-GTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----G----GTEEE
T ss_pred cCCceeecCCCChh-hhcccccccCcHHHHHHHHHccCCEEEEEEEC-----C----CCEEE
Confidence 45689999999975 4 5889999999999999999985 2 67776
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.51 E-value=0.0032 Score=51.01 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCceEEEecCCCCCCCHHHHH----HHhccCCcccEEEeeCCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVA----EMFKPCGEIALIRLLRPGK 162 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~----~~F~~~G~V~~Vrl~r~~~ 162 (175)
...++|||.++|.+ ++.++|+ ++|+.||.|..|++.+.|+
T Consensus 7 ~~~~~l~V~nlp~~-~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~ 50 (282)
T 3pgw_A 7 RPNHTIYINNLNEK-IKKDELKKSLYAIFSQFGQILDILVSRSLK 50 (282)
T ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHhccCCeEEEEEcCCCC
Confidence 45789999999975 8999977 8999999999999988655
No 186
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.51 E-value=0.0022 Score=44.47 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccE
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIAL 154 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~ 154 (175)
...++|||.++|.. ++.++|+++|+.|+.|..
T Consensus 13 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~~~~~~ 44 (102)
T 2fc8_A 13 QPSKTLFVKGLSED-TTEETLKESFDGSVRARI 44 (102)
T ss_dssp CCCSSEEEECCCTT-CCHHHHHHTSTTCSEEEE
T ss_pred CCCCEEEEeCCCCc-cCHHHHHHHhcCCeEEEE
Confidence 45689999999975 999999999998864433
No 187
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.50 E-value=0.002 Score=48.69 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.7
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
-.|||.+++.. +|.++|.++|++||.|..|++.+
T Consensus 29 L~I~V~NL~~~-vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 29 LRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp EEEEEESCCSC-CCHHHHHHHHTTSSCEEEEEEEE
T ss_pred EEEEECCCCCC-CCHHHHHHHHhCcCCEEEEEEEc
Confidence 47899999964 99999999999999999999875
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.40 E-value=0.00035 Score=52.54 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=36.1
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||.++|.+ ++.++|+++|+.||.+..+.++......+ |+|+|
T Consensus 11 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~~~~~~~~~~~~~~~----~g~af 58 (175)
T 1fje_B 11 TTPFNLFIGNLNPN-KSVAELKVAISELFAKNDLAVVDVRTGTN----RKFGY 58 (175)
T ss_dssp SSSEEEEEECCCTT-SCHHHHHHHHHHHHHHHTCCCCEEEEETT----TTEEE
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHhCCcceEEEEECCCCcc----ccEEE
Confidence 45789999999975 89999999999999876644443333333 67765
No 189
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.33 E-value=0.0031 Score=45.17 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCceEEEecCCC-CCC--------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 123 PSRTIVAINIPP-ESA--------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 123 ~~rtv~v~~~p~-~~~--------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
+.|.|++.++-. +.. ..++|++.|++||+|..|+++++....+ ..-|+|+|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~f 63 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIF 63 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEE
Confidence 568889888732 112 2479999999999999999998765433 33477765
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.24 E-value=0.0058 Score=43.59 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred CCCceEEEecCCCCCC----------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESA----------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~----------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|++.++..... +.++|+++|++||.|..|.|+... + |+|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~---~----~G~af 68 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH---P----DGVAS 68 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC---T----TCEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC---C----CEEEE
Confidence 3568999999853211 147999999999999999885321 4 77776
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.04 E-value=0.011 Score=43.99 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=29.5
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
.|||.++|.. ++.++|.++|++||.|..|+|.+
T Consensus 27 ~l~V~NL~~~-vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 27 LLSIQNPLYP-ITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEESCCSC-CCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEcCcCCC-CCHHHHHHHHHhcCCEEEEEEEe
Confidence 5789999964 89999999999999999999864
No 192
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.88 E-value=0.017 Score=56.18 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHhhhhhhccCCCCCcchH----HHHhhccCCC--CceeHHHHhcc-hhhhhhcC--------C----HHH
Q psy9843 29 KPDEDLTKRIIDQVEFYFSDENIVKDAF----LLKHVKRNKE--GFVSLKLISSF-KRVKHLSK--------D----WRV 89 (175)
Q Consensus 29 ~~~e~l~~~I~~QvEfYFSd~NL~~D~f----L~~~~~~~~~--g~Vpl~~i~~F-~r~k~lt~--------d----~~~ 89 (175)
+..++.-+.|+.+|.|.|||+-|.-.+= ||-.+..+.+ |.||+.+|+.+ -|+-+++. | .+.
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 4557788999999999999998877654 4444554444 89999999998 44444432 1 568
Q ss_pred HHHHHhcCCceEEeecCcEEEeCCCCCC
Q psy9843 90 VAFALAKSEKLQINEQGTKIRRVDPLPA 117 (175)
Q Consensus 90 i~~Al~~S~~lev~edg~~VRR~~plp~ 117 (175)
|..|...++.+-+++.+ +|+|..|+|.
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 208 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPS 208 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCH
Confidence 89999888766688776 9999999985
No 193
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.0077 Score=43.08 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 136 SATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 136 ~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
.++.++|+++|++||.|..|+|.+ .+ |+|+|
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~~----~~----rGfaF 58 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLSS----KK----PGTAV 58 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEES----SS----SSEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEcc----CC----CCEEE
Confidence 478999999999999999999983 34 77776
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.60 E-value=0.0071 Score=52.54 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCCceEEEecCCC-CCCCHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPP-ESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~-~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...++|||-+++. ..+|.++|+++|++||+|..|+|.+ . |+|+|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~----kgfaF 60 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----N----KPYSF 60 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----T----CSEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----C----CCEEE
Confidence 4568999988632 2489999999999999999999864 2 67877
No 195
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.07 E-value=0.026 Score=42.08 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
....|||.+++.+.++.++|+++|++||.|.+|.+.+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~ 55 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA 55 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 346799999997548999999999999999999987643
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.68 E-value=0.013 Score=41.67 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=23.3
Q ss_pred HHHHHHh-ccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 140 ELVAEMF-KPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 140 e~i~~~F-~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
++|++.| ++||+|..|++.++...-+ |+|+|
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~----~G~~f 72 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHL----VGNVY 72 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSS----EEEEE
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCc----cEEEE
Confidence 4455556 9999999999998654444 88876
No 197
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.57 E-value=0.057 Score=39.32 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=33.9
Q ss_pred CCCceEEEecCCCCCC---------CHHHHHHHhccCCcccEEEeeCCCCCCCCCCCccCCC
Q psy9843 122 TPSRTIVAINIPPESA---------TIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~---------t~e~i~~~F~~~G~V~~Vrl~r~~~~~p~~~~~~~~~ 174 (175)
...|+|++.+.-...- -.++|++.|++||.|..|.+.++. + |+|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~----~G~~f 59 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---A----QGNVY 59 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---T----TCCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---C----cEEEE
Confidence 4567888888753211 146889999999999999998753 3 77765
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=93.49 E-value=0.032 Score=40.86 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCceEEEecCCCC-CC---CHHHHHHHhccCCcccEEEeeCCC
Q psy9843 123 PSRTIVAINIPPE-SA---TIELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 123 ~~rtv~v~~~p~~-~~---t~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
+.|+|++.+.-.. +. -.++|++.|++||+|..|.++++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecC
Confidence 4578888887421 11 257999999999999999999864
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.02 E-value=0.092 Score=37.84 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=25.3
Q ss_pred Cce-EEEecCCCCCCCHHH----HHHHhccC-CcccEE
Q psy9843 124 SRT-IVAINIPPESATIEL----VAEMFKPC-GEIALI 155 (175)
Q Consensus 124 ~rt-v~v~~~p~~~~t~e~----i~~~F~~~-G~V~~V 155 (175)
..| +||.++|.. .+.++ |.++|++| |+|..|
T Consensus 8 ~~T~lYV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 8 CHTLLYVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp SSEEEEEESCCTT-SCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred cceEEEEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEE
Confidence 345 999999964 89887 55899999 599887
No 200
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=88.20 E-value=0.6 Score=37.13 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=36.6
Q ss_pred ccCCCCceeHHHHhcchhhh--hhcCCHHHHHHHHhcCCc--eEEeecCcEEEeCC
Q psy9843 62 KRNKEGFVSLKLISSFKRVK--HLSKDWRVVAFALAKSEK--LQINEQGTKIRRVD 113 (175)
Q Consensus 62 ~~~~~g~Vpl~~i~~F~r~k--~lt~d~~~i~~Al~~S~~--lev~edg~~VRR~~ 113 (175)
..+++|||+|+.|+. .+.+ ....+.+.|.+++..++. .+++ +.+||-++
T Consensus 23 ~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~--~~~IRA~q 75 (186)
T 1wfx_A 23 RLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELR--NGEIRARY 75 (186)
T ss_dssp CCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEE--TTEEEESS
T ss_pred ccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEee--ccEEEecc
Confidence 347899999999999 4434 344578999999987764 7776 44998764
No 201
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=81.00 E-value=2.4 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCcc
Q psy9843 127 IVAINIPPESATIELVAEMFKPCGEI 152 (175)
Q Consensus 127 v~v~~~p~~~~t~e~i~~~F~~~G~V 152 (175)
|+..+||++ +...+|..+|++||-|
T Consensus 18 Vf~l~FP~e-wKt~DI~~lFs~fggv 42 (100)
T 1whv_A 18 VLHVTFPKE-WKTSDLYQLFSAFGNI 42 (100)
T ss_dssp EEEEECCTT-CCHHHHHHHHTTTCSC
T ss_pred EEEEeCChh-hhhHHHHHHhhccCCE
Confidence 555599986 8999999999999954
No 202
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.16 E-value=2.2 Score=30.23 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=27.5
Q ss_pred CceEEEecCCC----CCCC---HHHHHHHhccCCcccEEEeeCCC
Q psy9843 124 SRTIVAINIPP----ESAT---IELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 124 ~rtv~v~~~p~----~~~t---~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.-||+|.-.+. +... +.+|...|++||+|..||+..+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 34777666552 1123 57899999999999999988644
No 203
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=79.94 E-value=1.9 Score=31.21 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=21.2
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcc
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEI 152 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V 152 (175)
-|+..+||++ +...+|..+|++||-|
T Consensus 7 HV~~l~FP~e-wKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 7 HVLHVTFPKE-WKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEEECCTT-CCHHHHHHHTTTSEEE
T ss_pred eEEEEeCChh-hhhHHHHHHHhccCCE
Confidence 3555599986 8999999999999943
No 204
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=72.71 E-value=1 Score=35.08 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=25.9
Q ss_pred CHHHHHHHhccCCcccEEEeeCCCCCC-CCCCCccCCC
Q psy9843 138 TIELVAEMFKPCGEIALIRLLRPGKYT-KYGNTRHFSF 174 (175)
Q Consensus 138 t~e~i~~~F~~~G~V~~Vrl~r~~~~~-p~~~~~~~~~ 174 (175)
..++|.+.|++||.|..|.++++.... +-+..|+|.|
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~f 179 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIF 179 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEE
Confidence 457999999999999999998764321 1123455554
No 205
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=70.94 E-value=3.7 Score=30.39 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCCceEEEecCCCCCCCHHHHHHHhccCCcccEEEe
Q psy9843 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157 (175)
Q Consensus 122 ~~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl 157 (175)
...+.|.|-|||++ ....|-..|++||.|...+.
T Consensus 22 ~~~~wVtVFGFp~~--~~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA--SASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGG--GHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEEEECCCHH--HHHHHHHHHHhhCcEEEecc
Confidence 35689999999975 68899999999999998886
No 206
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=64.33 E-value=3.9 Score=36.74 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~ 160 (175)
..|+|+|. +|.+ .+..++.++|+.||+|..+-+.+.
T Consensus 52 a~rsv~v~-~~~~-~~~~~l~~y~~~~g~i~~~~~~~~ 87 (464)
T 3pq1_A 52 AQRTVLIH-CPEK-ISENKFLKYLSQFGPINNHFFYES 87 (464)
T ss_dssp HHTEEEEE-ECCC----CHHHHHHGGGSCCCCEEEECS
T ss_pred hcceEEEE-cCCC-CCHHHHHHHHHhcCCcceEEEEcc
Confidence 46999998 5765 789999999999999999999864
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.38 E-value=5 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=27.8
Q ss_pred CceEEEecCCCC-----CCC---HHHHHHHhccCCcccEEEeeCCC
Q psy9843 124 SRTIVAINIPPE-----SAT---IELVAEMFKPCGEIALIRLLRPG 161 (175)
Q Consensus 124 ~rtv~v~~~p~~-----~~t---~e~i~~~F~~~G~V~~Vrl~r~~ 161 (175)
.-||+|.-.+.. +.. +.+|...|+.||+|..||+..+.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 458888765521 123 56899999999999999987643
No 208
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=53.46 E-value=20 Score=23.75 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHHHhhhhhhccCCCCCcchHHHHhhccCCCCce--eHHHHhcchhhhhhcCCHHHHHHHHh
Q psy9843 35 TKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFV--SLKLISSFKRVKHLSKDWRVVAFALA 95 (175)
Q Consensus 35 ~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~V--pl~~i~~F~r~k~lt~d~~~i~~Al~ 95 (175)
.+.+..||...|++.-..-=.||...+ +.+||+ ++..|+. .+..+.+.|..+|+
T Consensus 15 ~ehL~~Ql~~~~~~~~~~Ia~~iI~~L--D~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 15 LEELQQNIKLELEGKEQELALELLNYL--NEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 70 (76)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHC--TTSSTTCCCHHHHHH-----HHTSCHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhc--CCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 788999998445554433446777777 789996 6777764 23467777777765
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.42 E-value=46 Score=23.93 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccC-----CcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPC-----GEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~-----G~V~~Vrl~r 159 (175)
..++|.|+++|++ .+.+-|+=+|+.- |.|..|....
T Consensus 7 ~~~~I~V~~lPp~-~~~e~L~LYFEn~rrsGGG~V~~v~~~~ 47 (104)
T 2dhx_A 7 GGVAVEVRGLPPA-VPDELLTLYFENRRRSGGGPVLSWQRLG 47 (104)
T ss_dssp CCCEEEEESCCTT-SCHHHHHHHHHCTTTTCCCCEEEEEEET
T ss_pred CccEEEEECCCCC-CChhHheEEEeCCCcCCCceeeEEEEcC
Confidence 4579999999985 8899999999982 5899888764
No 210
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=36.69 E-value=20 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.7
Q ss_pred CceEEEecCCCCCCCHHHHHHHhccCCcccE
Q psy9843 124 SRTIVAINIPPESATIELVAEMFKPCGEIAL 154 (175)
Q Consensus 124 ~rtv~v~~~p~~~~t~e~i~~~F~~~G~V~~ 154 (175)
+-.|.|-|||+. ....|-+.|++||.|..
T Consensus 7 e~~VtVFGFp~~--~~~~VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 7 ELAILVFGYPET--MANQVIAYFQEFGTILE 35 (132)
T ss_dssp -CEEEEECCCGG--GHHHHHHHHGGGSCBCS
T ss_pred ceEEEEEecCHH--HHHHHHHHHHhhceEee
Confidence 346899999964 67789999999999865
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=36.50 E-value=51 Score=22.81 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.2
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r 159 (175)
-|+|+.+|+. +|.++..+.+++++.+...+...
T Consensus 3 KvVIRrLPP~-LteeeF~~~l~~~~~~d~~~fv~ 35 (91)
T 1uw4_A 3 KVVIRRLPPT-LTKEQLQEHLQPMPEHDYFEFFS 35 (91)
T ss_dssp EEEEEEECTT-CCHHHHHHHHCSCCCEEEEEEEE
T ss_pred EEEEeCCCCC-CCHHHHHHHhcCcccceEEEEeC
Confidence 4899999985 99999999999999887776654
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.47 E-value=46 Score=24.49 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCceEEEecCCCCCCCHHHHHHHhccC-----CcccEEEeeC
Q psy9843 123 PSRTIVAINIPPESATIELVAEMFKPC-----GEIALIRLLR 159 (175)
Q Consensus 123 ~~rtv~v~~~p~~~~t~e~i~~~F~~~-----G~V~~Vrl~r 159 (175)
..|||-+-++|. +++-..|+++.+++ |.+..|-++-
T Consensus 20 ~~rtiaL~~ipD-tvndarIr~lve~~~~i~~g~i~KI~L~p 60 (117)
T 2l9w_A 20 LETLICLFPLSD-KVSPSLICQFLQEEIHINEKDIRKILLVS 60 (117)
T ss_dssp TTSCEEEECCCT-TCCHHHHHHHHHHHTCCCTTTCSEEEEET
T ss_pred CCcEEEEecCCC-CCCHHHHHHHHhhhhccCccceeEEEEec
Confidence 479999999995 59999999999999 9988887653
No 213
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=24.18 E-value=49 Score=24.22 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCce--eHHHHhcchhhhhhcCCHHHHHHHHh
Q psy9843 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFV--SLKLISSFKRVKHLSKDWRVVAFALA 95 (175)
Q Consensus 33 ~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~V--pl~~i~~F~r~k~lt~d~~~i~~Al~ 95 (175)
.+.+.+..|+...||+.-..-=.|+...+ +.+||+ ++..|+. .+..+.+.|..+|+
T Consensus 4 sL~e~L~~Ql~~~~~~~~~~ia~~iI~~L--D~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 61 (130)
T 2k9m_A 4 SELEELQQNIKLELEGKEQELALELLNYL--NEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 61 (130)
T ss_dssp CHHHHHHHHHHHHCCSHHHHHHHHHTTSB--CTTSSBSSCHHHHHH-----HTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHcccCCHHHHHHHHHHHHhc--CCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 46778889988445553322234555555 788997 6666664 23467777776665
No 214
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.64 E-value=78 Score=21.05 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=30.5
Q ss_pred ceEEEecCCCCCCCHHHHHHHhccC--CcccEEEeeCCCCCCC
Q psy9843 125 RTIVAINIPPESATIELVAEMFKPC--GEIALIRLLRPGKYTK 165 (175)
Q Consensus 125 rtv~v~~~p~~~~t~e~i~~~F~~~--G~V~~Vrl~r~~~~~p 165 (175)
+-+-|-+-+-..++++++.+++... |....+.+.|.+...|
T Consensus 53 ~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~p 95 (96)
T 1ujv_A 53 LIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSS 95 (96)
T ss_dssp EEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSCSC
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCCCC
Confidence 3344555555556789999998875 7888899999888776
No 215
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.22 E-value=1.1e+02 Score=19.98 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=29.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCCCC
Q psy9843 127 IVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTK 165 (175)
Q Consensus 127 v~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~~p 165 (175)
+-+-+.+....+++++.+++...+....+.+.|.+...|
T Consensus 55 ~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~~~ 93 (94)
T 1vb7_A 55 VAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPSS 93 (94)
T ss_dssp EEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCCCC
T ss_pred EEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcCCC
Confidence 445555555566799999998887777888999888766
No 216
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=22.03 E-value=1.1e+02 Score=19.59 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=28.2
Q ss_pred eEEEecCCCCCCCHHHHHHHhccCCcccEEEeeCCCCC
Q psy9843 126 TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163 (175)
Q Consensus 126 tv~v~~~p~~~~t~e~i~~~F~~~G~V~~Vrl~r~~~~ 163 (175)
-+-+-+.+-...+++++.+++...|....+.+.|++..
T Consensus 52 I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 89 (90)
T 2he4_A 52 LIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89 (90)
T ss_dssp EEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCCC
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 34455555555677999999998888888888887654
No 217
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.35 E-value=46 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=21.5
Q ss_pred HhhccCCCCceeHHHHhcchhhhhhcCCHHHHHHHHh
Q psy9843 59 KHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALA 95 (175)
Q Consensus 59 ~~~~~~~~g~Vpl~~i~~F~r~k~lt~d~~~i~~Al~ 95 (175)
..+-.+.+|+|....+..+= +++..+.+.+.+.++
T Consensus 17 ~~~D~d~dG~I~~~el~~~l--~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 17 LKTDKDMDGFVSGLEVREIF--LKTGLPSTLLAHIWS 51 (95)
T ss_dssp HHHCTTCSSEECHHHHHHHH--HTTTCCHHHHHHHHH
T ss_pred HHhCCCCCCcEeHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 34455788999988877652 233344555555554
No 218
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=20.68 E-value=88 Score=25.08 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhhhccCCCCCcchHHHHhhccCCCCceeHHHHhcchhhhh----hcCCHHHHHHHHh
Q psy9843 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKH----LSKDWRVVAFALA 95 (175)
Q Consensus 32 e~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpl~~i~~F~r~k~----lt~d~~~i~~Al~ 95 (175)
++++..++.| |.+||...| .++|..-|-.+..|-|+-. +..|.+.|.+|=+
T Consensus 5 e~lR~Elk~q-----------RE~~Ls~Ii--~sdGp~tIlQLid~LRiidtDlLlkVD~~~V~kAG~ 59 (224)
T 2jo7_A 5 DVLRGELRGQ-----------REAFLSEII--KSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGK 59 (224)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHH--HCCSCCCTTHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHHH--ccCCCeeHHHHHHHHHHhccchhhccCHHHHHHHHH
Confidence 5667777776 457888888 5799999999999999986 4667777766644
Done!