Your job contains 1 sequence.
>psy9843
MNKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKH
VKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQ
TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSFG
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9843
(175 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 471 6.2e-44 1
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 333 2.4e-33 2
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 330 2.4e-33 2
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 333 3.4e-33 2
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 326 2.7e-32 2
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 324 3.1e-32 2
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 323 6.9e-32 2
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 302 3.0e-30 2
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 308 1.7e-27 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 305 3.5e-27 1
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 292 1.9e-25 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 225 1.6e-18 1
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 227 2.2e-18 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 222 1.7e-17 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 207 8.6e-17 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 206 1.1e-16 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 214 1.4e-16 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 210 3.5e-16 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 210 3.5e-16 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 210 3.5e-16 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 208 6.0e-16 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 207 7.7e-16 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 206 1.1e-15 1
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 202 1.6e-15 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 203 2.1e-15 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 203 2.1e-15 1
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 200 3.9e-15 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 166 4.2e-14 2
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 177 1.3e-13 1
ASPGD|ASPL0000060980 - symbol:AN1045 species:162425 "Emer... 183 1.4e-13 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 176 1.6e-13 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 174 2.7e-13 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 177 4.7e-13 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 177 6.3e-13 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 177 6.4e-13 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 177 6.5e-13 1
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 176 8.2e-13 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 169 9.1e-13 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 169 9.1e-13 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 173 1.7e-12 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 176 1.8e-12 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 168 6.1e-12 1
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ... 164 9.3e-12 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 161 1.1e-11 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 164 1.8e-11 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 163 1.9e-11 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 156 2.2e-11 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 163 2.3e-11 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 163 2.3e-11 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 161 3.3e-11 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 149 7.2e-10 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 154 1.0e-09 1
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37... 146 1.5e-09 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 144 2.4e-09 1
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 137 1.7e-08 1
ASPGD|ASPL0000062948 - symbol:AN1288 species:162425 "Emer... 136 4.7e-08 1
UNIPROTKB|Q96J85 - symbol:LARP4 "La-related protein 4" sp... 131 5.7e-08 1
UNIPROTKB|E9PDG5 - symbol:LARP4 "La-related protein 4" sp... 131 7.8e-08 1
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 132 7.8e-08 1
DICTYBASE|DDB_G0289333 - symbol:DDB_G0289333 species:4468... 132 1.0e-07 1
UNIPROTKB|F1SH87 - symbol:LARP4 "Uncharacterized protein"... 132 1.2e-07 1
UNIPROTKB|E2R028 - symbol:LARP4 "Uncharacterized protein"... 132 1.2e-07 1
UNIPROTKB|F1PIU8 - symbol:LARP4 "Uncharacterized protein"... 132 1.2e-07 1
FB|FBgn0261618 - symbol:larp "La related protein" species... 136 1.3e-07 1
UNIPROTKB|G3XAA8 - symbol:LARP4 "La-related protein 4" sp... 131 1.4e-07 1
UNIPROTKB|Q71RC2 - symbol:LARP4 "La-related protein 4" sp... 131 1.6e-07 1
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 132 1.7e-07 1
UNIPROTKB|F1MHD9 - symbol:LARP4 "Uncharacterized protein"... 129 2.1e-07 1
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 131 2.2e-07 1
MGI|MGI:2443114 - symbol:Larp4 "La ribonucleoprotein doma... 129 2.6e-07 1
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 131 2.7e-07 1
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 128 5.1e-07 1
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 128 5.4e-07 1
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 126 1.1e-06 1
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 126 2.3e-06 1
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 122 4.5e-06 1
POMBASE|SPAC1527.03 - symbol:SPAC1527.03 "RNA-binding pro... 123 5.0e-06 1
FB|FBgn0035424 - symbol:CG11505 species:7227 "Drosophila ... 126 5.4e-06 1
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 122 8.4e-06 1
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 122 1.8e-05 1
UNIPROTKB|F1P1X0 - symbol:LARP4B "Uncharacterized protein... 121 2.0e-05 1
UNIPROTKB|E9PGX9 - symbol:SSB "Lupus La protein" species:... 98 3.8e-05 1
DICTYBASE|DDB_G0281835 - symbol:DDB_G0281835 species:4468... 113 0.00011 1
UNIPROTKB|F1M4K9 - symbol:LOC683071 "Protein LOC683071" s... 115 0.00011 1
UNIPROTKB|F1MHX7 - symbol:LARP4B "Uncharacterized protein... 113 0.00028 1
SGD|S000002923 - symbol:SLF1 "RNA binding protein that as... 109 0.00050 1
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 471 (170.9 bits), Expect = 6.2e-44, P = 6.2e-44
Identities = 88/161 (54%), Positives = 127/161 (78%)
Query: 3 KEKVPPGCDTSAKPNSRSENEEI-PFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
+++VP + +P +E + + P + P E+L I D VEFYFS+E+I+KDAFLLKHV
Sbjct: 249 EQEVPVHQEQDTEPQGPNEIDTLDPSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHV 308
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALA-KSEKLQINEQGTKIRRVDPLPAYDQ 120
+RNKEGFVSLKL+SSFKRV+ L+++W+VV A+ KS K+++N+ GTK+RR++PLP++D+
Sbjct: 309 RRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDE 368
Query: 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161
T PSRTIVA ++P + TIE V+++F PCGEIALIR+L+PG
Sbjct: 369 TMPSRTIVACDLPLDKLTIEKVSDLFSPCGEIALIRILKPG 409
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 333 (122.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 62/125 (49%), Positives = 91/125 (72%)
Query: 9 GCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGF 68
G TS N R + E+ + PDE+L K+++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+
Sbjct: 1 GATTSGGENERDDLEQ-EWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGY 59
Query: 69 VSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTI 127
VS+KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ +
Sbjct: 60 VSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKML 119
Query: 128 VAINI 132
+ ++
Sbjct: 120 LVYDL 124
Score = 46 (21.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 135 ESATIELVAEMFKPCGEIALIRLLRPGK 162
+ +E + ++F G I+ +R+L+PG+
Sbjct: 143 QEKVMEHLLKLFGTFGVISSVRMLKPGR 170
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 330 (121.2 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 60/125 (48%), Positives = 91/125 (72%)
Query: 9 GCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGF 68
G TS N R + E+ + PD++L ++++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+
Sbjct: 4 GATTSGGENERDDGEQ-EWKPPDQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGY 62
Query: 69 VSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTI 127
VS+KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ +
Sbjct: 63 VSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKML 122
Query: 128 VAINI 132
+ ++
Sbjct: 123 LVYDL 127
Score = 49 (22.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 129 AINIPPESATI-ELVAE----MFKPCGEIALIRLLRPGK 162
A+ PP++ + E V E +F G I+ +R+L+PG+
Sbjct: 135 ALATPPKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGR 173
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 333 (122.3 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 62/125 (49%), Positives = 91/125 (72%)
Query: 9 GCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGF 68
G TS N R + E+ + PDE+L K+++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+
Sbjct: 68 GATTSGGENEREDLEQ-EWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGY 126
Query: 69 VSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTI 127
VS+KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ +
Sbjct: 127 VSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKML 186
Query: 128 VAINI 132
+ ++
Sbjct: 187 LVYDL 191
Score = 46 (21.3 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 135 ESATIELVAEMFKPCGEIALIRLLRPGK 162
+ +E + ++F G I+ +R+L+PG+
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPGR 237
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 326 (119.8 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 61/125 (48%), Positives = 90/125 (72%)
Query: 9 GCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGF 68
G S N R + E+ + PDE+L K+++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+
Sbjct: 68 GTTASGGENEREDLEQ-EWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGY 126
Query: 69 VSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTI 127
VS+KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ +
Sbjct: 127 VSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKML 186
Query: 128 VAINI 132
+ ++
Sbjct: 187 LVYDL 191
Score = 46 (21.3 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 135 ESATIELVAEMFKPCGEIALIRLLRPGK 162
+ +E + ++F G I+ +R+L+PG+
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPGR 237
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 324 (119.1 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 61/122 (50%), Positives = 90/122 (73%)
Query: 12 TSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSL 71
TS N R E+ E + PDE+L ++++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+VS+
Sbjct: 71 TSGGENDR-EDLEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 129
Query: 72 KLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTIVAI 130
KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ ++
Sbjct: 130 KLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVY 189
Query: 131 NI 132
++
Sbjct: 190 DL 191
Score = 48 (22.0 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 135 ESATIELVAEMFKPCGEIALIRLLRPGK 162
+ +E + ++F G I+ +R+L+PG+
Sbjct: 210 QEKVMEYLLKLFGTFGVISSVRILKPGR 237
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 323 (118.8 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 61/122 (50%), Positives = 90/122 (73%)
Query: 12 TSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSL 71
TS N R E+ E + PDE+L ++++DQ+EFYFSDEN+ KDAFLLKHV+RNK G+VS+
Sbjct: 71 TSGGENDR-EDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 129
Query: 72 KLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTIVAI 130
KL++SFK+VKHL++DWR A AL S L++NE K+RR P+P + ++ PS+ ++
Sbjct: 130 KLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVY 189
Query: 131 NI 132
++
Sbjct: 190 DL 191
Score = 46 (21.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 135 ESATIELVAEMFKPCGEIALIRLLRPGK 162
+ +E + ++F G I+ +R+L+PG+
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPGR 237
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 302 (111.4 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 56/118 (47%), Positives = 85/118 (72%)
Query: 12 TSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSL 71
+S S E EE + PD +L ++++ Q+E+Y SDEN+ DAFLLKHV+RNK GFVS+
Sbjct: 56 SSGAGTSGGELEEESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSV 115
Query: 72 KLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY-DQTTPSRTIV 128
KL++SFK+VKHL++DWR A+AL S L++N++G K+RR +P + ++ PSR ++
Sbjct: 116 KLLTSFKKVKHLTRDWRTTAYALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLL 173
Score = 54 (24.1 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 139 IELVAEMFKPCGEIALIRLLRPGK 162
+EL+ + F G IA +R+L+PGK
Sbjct: 204 MELLLKAFGNYGPIASVRVLKPGK 227
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 66/179 (36%), Positives = 108/179 (60%)
Query: 2 NKEKVPPG--CDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLK 59
+K+K P TS ++ + + P+ DL ++++ Q+E+YFSDEN+ KDAFLLK
Sbjct: 13 SKKKKPKRKQMPTSISGGENDDDSDQNWKPPENDLIQKLVAQIEYYFSDENLEKDAFLLK 72
Query: 60 HVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAY- 118
HV+RNK G+VS+KL++SFK+VKHL++DWR AL S+ L++N+ K+RR P+P +
Sbjct: 73 HVRRNKMGYVSVKLLTSFKKVKHLTRDWRTTTHALKYSDMLELNDDNRKVRRKTPVPVFP 132
Query: 119 DQTTPSRTIVAINI----------PPESATI-----ELVAEMFKPCGEIALIRLLRPGK 162
+ P+R ++ +I E+ I E + + F G I+ +R+L+PG+
Sbjct: 133 SENLPTRMLLVYDIHMISELQGLNKQENGCIQEKVMEYLLKAFVTFGVISSVRILKPGR 191
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 60/121 (49%), Positives = 88/121 (72%)
Query: 10 CDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFV 69
CDTS S E + + PD L +RI+ QVEFY SDEN+ KDAFLLKHV++NK GFV
Sbjct: 55 CDTSDAVGS--ELFDCSYSIPDPQLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFV 112
Query: 70 SLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLP-AYDQTTPSRTIV 128
S+KL++SFK+VK+L++DWR+ +AL S+ L++N++GTK+RR P+P + P++ ++
Sbjct: 113 SIKLLTSFKKVKYLTRDWRLTLYALRFSKLLEVNQEGTKVRRRVPIPDSILNIPPTKLLL 172
Query: 129 A 129
A
Sbjct: 173 A 173
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 292 (107.8 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 66/152 (43%), Positives = 98/152 (64%)
Query: 27 FVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86
++ P++D+T++I Q+E Y SDEN+ DAFLLKHV+RNK G+VSLKL++SFK+++ L++D
Sbjct: 54 WIPPNDDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRD 113
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTP-SRTIVAINI----PP-----ES 136
WR A S +L++NE GTK+RR P+P + P S+ ++A N P ES
Sbjct: 114 WRTTLAAARTSLQLEVNEMGTKVRRRTPVPDWLLCIPTSKLLLAWNFLDGAGPVKEKFES 173
Query: 137 ATIELVAEM------FKPCGEIALIRLLRPGK 162
+E + M F P G I+ +R+LRPGK
Sbjct: 174 PGVEQLGIMEAAMRVFSPYGTISSLRILRPGK 205
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 225 (84.3 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 48/128 (37%), Positives = 78/128 (60%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
E+ + +I+ QVE+YFSD N +D FL +N + ++S+ +I+SF R+K +S D +++
Sbjct: 3 EETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLIT 62
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCG- 150
AL KS +LQ++E G +RR+DPLP + +T+ + P E TIE V E F G
Sbjct: 63 EALKKSTRLQVSEDGKMVRRLDPLP--ENIDCGKTLYSKGWP-EDTTIEKVQEFFNANGG 119
Query: 151 -EIALIRL 157
++ +RL
Sbjct: 120 YKVVSVRL 127
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 227 (85.0 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 48/133 (36%), Positives = 81/133 (60%)
Query: 28 VKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDW 87
V P ++L ++II QVE+YFSDEN+ D FLL +KRNK+GFV + I++F ++K L++D
Sbjct: 97 VVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDH 156
Query: 88 RVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
++ AL +S L ++ K++R+ PLP + T++ N+P + + E + E+F
Sbjct: 157 ALIVSALKESSFLVVSADEKKVKRLSPLPEI-RDPKIFTVLVENLPEDHSN-ENIREIFG 214
Query: 148 PCGEIALIRLLRP 160
G I + + P
Sbjct: 215 KAGSIKSVSICDP 227
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 222 (83.2 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/171 (28%), Positives = 97/171 (56%)
Query: 1 MNKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKH 60
++ EK+ DT+ S ++ E + L + QVEF+F D N+ KD F+
Sbjct: 9 IDTEKMSSVGDTACADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSI 68
Query: 61 VKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQ 120
++++++G++ + ++++F R+K+L+ D +++A AL S +++N++GT+IRR +PL +
Sbjct: 69 IEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPK 128
Query: 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRH 171
SRT+ + + P++ T + +F CG + I + R Y +TRH
Sbjct: 129 DVDSRTVY-VELLPKTVTHIWLERVFSKCGHVVYISIPR------YKSTRH 172
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 50/173 (28%), Positives = 94/173 (54%)
Query: 2 NKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
N+EKV + S + E ++ VK + I QV+F+F D N+ KD FL + +
Sbjct: 7 NQEKVME--EESTEKKKEVEKKKRSRVK---QVLADIAKQVDFWFGDANLHKDRFLREQI 61
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQT 121
+++++G+V + L+ SF ++K L+ D +++A AL S ++++ +GT+IRR PL +
Sbjct: 62 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKD 121
Query: 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
RT+ + + P++ + +F CG + I + P Y G+ + F+F
Sbjct: 122 EDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI--P-HYKSTGDPKGFAF 170
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 41/137 (29%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A A+ S
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSS 99
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + SRT+ + + P++ + +F CG + + +
Sbjct: 100 SVVELDLEGTRIRRRRPLGERPKDVDSRTVY-VELLPKNVNHSWIERVFGKCGNVVYVSI 158
Query: 158 LRPGKYTKYGNTRHFSF 174
R Y G+ + F+F
Sbjct: 159 PR---YKSTGDPKGFAF 172
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 214 (80.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 49/173 (28%), Positives = 91/173 (52%)
Query: 2 NKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
N+EK C K + + + V D I QV+F+F D N+ KD FL + +
Sbjct: 7 NQEKAMEECTEKKKEVEKKKRSRVKQVLAD------IAKQVDFWFGDANLHKDRFLREQI 60
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQT 121
+++++G+V + L+ SF ++K L+ D +++A AL S ++++ +GT+IRR PL +
Sbjct: 61 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKD 120
Query: 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
RT+ + + P++ + +F CG + I + P Y G+ + F+F
Sbjct: 121 EDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI--P-HYKSTGDPKGFAF 169
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 210 (79.0 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 43/137 (31%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ T + +F CG + I +
Sbjct: 92 SVVELDLEGTRIRRKKPLGERPKDEEERTVY-VELLPKNVTHSWIERVFGKCGNVVYISI 150
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 151 --P-HYKSTGDPKGFAF 164
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 210 (79.0 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 43/137 (31%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ T + +F CG + I +
Sbjct: 93 SVVELDLEGTRIRRKKPLGERPKDEEERTVY-VELLPKNVTHSWIERVFGKCGNVVYISI 151
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 152 --P-HYKSTGDPKGFAF 165
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 210 (79.0 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 43/137 (31%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ T + +F CG + I +
Sbjct: 93 SVVELDLEGTRIRRKKPLGERPKDEEERTVY-VELLPKNVTHSWIERVFGKCGNVVYISI 151
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 152 --P-HYKSTGDPKGFAF 165
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 208 (78.3 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 42/137 (30%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I+ QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 36 IVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 95
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ + +F CG + I +
Sbjct: 96 AVVELDLEGTRIRRKKPLGERPKDEDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI 154
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 155 --P-HYKSTGDPKGFAF 168
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 207 (77.9 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 50/173 (28%), Positives = 94/173 (54%)
Query: 2 NKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
N+EKV + S + E ++ VK + I QV+F+F D N+ KD FL + +
Sbjct: 7 NQEKVME--EESTEKKKEVEKKKRSRVK---QVLADIAKQVDFWFGDANLHKDRFLREQI 61
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQT 121
+++++G+V + L+ SF ++K L+ D +++A AL S ++++ +GT+IRR PL +
Sbjct: 62 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKD 121
Query: 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
RT+ + + P++ + +F CG + I + P Y G+ + F+F
Sbjct: 122 EDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI--P-HYKSTGDPKGFAF 170
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 41/137 (29%), Positives = 81/137 (59%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A A+ S
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSS 99
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + SRT+ + + P++ + +F CG + + +
Sbjct: 100 SVVELDLEGTRIRRRRPLGERPKDVDSRTVY-VELLPKNVNHSWIERVFGKCGNVVYVSI 158
Query: 158 LRPGKYTKYGNTRHFSF 174
R Y G+ + F+F
Sbjct: 159 PR---YKSTGDPKGFAF 172
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 202 (76.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 46/154 (29%), Positives = 84/154 (54%)
Query: 8 PGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEG 67
P A NS S ++ + +DL +I+ QVE+ F+D +++ + + KH+ ++ EG
Sbjct: 122 PAVQFPASQNSSSSSKNLL----SDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEG 177
Query: 68 FVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD-QTTPSRT 126
+V + I+S K++K L+ + +V+ AL S KL ++E G K++R D + RT
Sbjct: 178 YVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRT 237
Query: 127 IVAINIPPESATIELVAEMFKPCGEIALIRLLRP 160
+VA N+P + + L ++F G + IR+ P
Sbjct: 238 VVAENLPDDHSYQNL-EKIFGVVGNVKAIRICHP 270
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 203 (76.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 42/137 (30%), Positives = 80/137 (58%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSS 97
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ + +F CG + I +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI 156
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 157 --P-HYKSTGDPKGFAF 170
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 203 (76.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 42/137 (30%), Positives = 80/137 (58%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKS 97
I QV+F+F D N+ KD FL + ++++++G+V + L+ SF ++K L+ D +++A AL S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSS 97
Query: 98 EKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRL 157
++++ +GT+IRR PL + RT+ + + P++ + +F CG + I +
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERTVY-VELLPKNVNHSWIERVFGKCGNVVYISI 156
Query: 158 LRPGKYTKYGNTRHFSF 174
P Y G+ + F+F
Sbjct: 157 --P-HYKSTGDPKGFAF 170
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 200 (75.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 43/130 (33%), Positives = 78/130 (60%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
ED ++I++QVE+YFSD N+ L++ + ++ EG+V + +++SFK++K + + +A
Sbjct: 191 EDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLA 250
Query: 92 FALAKSEKLQINEQGTKIRRVDPLP-AYDQTTPSRTIVAINIPPESATIELVAEMFKPCG 150
L S KL ++E G K+RR+ P+ + + SR IVA N+P + L+ ++F G
Sbjct: 251 AVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLM-KIFSTVG 309
Query: 151 EIALIRLLRP 160
+ IR +P
Sbjct: 310 SVKNIRTCQP 319
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 166 (63.5 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 48/152 (31%), Positives = 81/152 (53%)
Query: 18 SRSENEEIPFVKPDE---DLT---KRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSL 71
S + EE K D+ DL+ ++ QVEFYFSD N+ D FL ++N +G+V +
Sbjct: 41 SEEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPI 99
Query: 72 KLISSFKRVKHLSKDWRVVAFALAKS-EKLQINEQGTKIRRVDPLPAYD-QTTPSRTIVA 129
+ I++FKR++ + + AL KS E L+++E G K+RR+ PL D ++ R++
Sbjct: 100 QTIANFKRMRRF-QPLEAIVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYC 158
Query: 130 INIPPESATIELVAEMF--KPCGEIALIRLLR 159
E ++ E F + G I+ +R+ R
Sbjct: 159 KGFGDEKDDTQIALEKFFEENAGPISAVRMRR 190
Score = 35 (17.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 159 RPGKYTKYG 167
RPGKY+ G
Sbjct: 269 RPGKYSNRG 277
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 45/134 (33%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>ASPGD|ASPL0000060980 [details] [associations]
symbol:AN1045 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:AACD01000016
EMBL:BN001308 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715 RefSeq:XP_658649.1
ProteinModelPortal:Q5BEI5 STRING:Q5BEI5
EnsemblFungi:CADANIAT00001597 GeneID:2876822 KEGG:ani:AN1045.2
HOGENOM:HOG000206315 OMA:EVQKDAR Uniprot:Q5BEI5
Length = 400
Score = 183 (69.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 58/162 (35%), Positives = 81/162 (50%)
Query: 19 RSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFK 78
R+E++ P + + D I QVEFYFSD N+ D FLL V +K V L+L+ SFK
Sbjct: 90 RNESKFDPSTQKETDDPVEIRKQVEFYFSDSNLPMDKFLLSKVGGSKNNPVPLELLHSFK 149
Query: 79 RVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLP-----AYDQTTP--------SR 125
R++ + + + AL SE L++ + T +RR PLP +D T +R
Sbjct: 150 RMRRF-QPFSAIVEALKNSETLELTDNDTAVRRKVPLPETVKDTHDPTVVKVFEDKAMAR 208
Query: 126 TIVAINIPPESATIELVAE-MFKPCGEIALIRLLRPG-KYTK 165
+I A E+ T +L E F P G I IRL R KY K
Sbjct: 209 SIYAKGFGEETPTTQLDIEAFFAPYGPINAIRLRRTNEKYFK 250
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 47/143 (32%), Positives = 80/143 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF + N+ +D FL + +K + +G+V L+++ F R+ LSKD+ V+ A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L KS+ ++INE TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLRPGKYTKYGN 168
+ G + I++ R + T G+
Sbjct: 131 LEDKGPVENIQMRRTLQKTFKGS 153
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/126 (31%), Positives = 73/126 (57%)
Query: 2 NKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
N+EKV + S + E ++ VK + I QV+F+F D N+ KD FL + +
Sbjct: 7 NQEKVME--EESTEKKKEVEKKKRSRVK---QVLADIAKQVDFWFGDANLHKDRFLREQI 61
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQT 121
+++++G+V + L+ SF ++K L+ D +++A AL S ++++ +GT+IRR PL +
Sbjct: 62 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKD 121
Query: 122 TPSRTI 127
RT+
Sbjct: 122 EDERTV 127
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 177 (67.4 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 45/134 (33%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 177 (67.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 46/134 (34%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIIEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + +
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTD-ATLDDIKDW 130
Query: 146 FKPCGEIALIRLLR 159
+ GEI I++ R
Sbjct: 131 LEDKGEILNIQMRR 144
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 177 (67.4 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 45/134 (33%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 177 (67.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 45/134 (33%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 176 (67.0 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 47/143 (32%), Positives = 80/143 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF + N+ +D FL + +K + +G+V L+++ F R+ LSKD+ V+ A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L KS+ ++INE TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLRPGKYTKYGN 168
+ G + I++ R + T G+
Sbjct: 131 LEDKGPVENIQMRRTLQKTFKGS 153
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 43/127 (33%), Positives = 72/127 (56%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF + N+ +D FL + +K + +G+V L+++ F R+ LSKD+ V+ A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L KS+ ++INE TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLD-ATLDDIKEW 130
Query: 146 FKPCGEI 152
+ G +
Sbjct: 131 LEDKGPV 137
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 38/114 (33%), Positives = 69/114 (60%)
Query: 2 NKEKVPPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHV 61
N+EKV + S + E ++ VK + I QV+F+F D N+ KD FL + +
Sbjct: 7 NQEKVME--EESTEKKKEVEKKKRSRVK---QVLADIAKQVDFWFGDANLHKDRFLREQI 61
Query: 62 KRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPL 115
+++++G+V + L+ SF ++K L+ D +++A AL S ++++ +GT+IRR PL
Sbjct: 62 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPL 115
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 44/134 (32%), Positives = 77/134 (57%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS E ++I+E TKIRR PLP Y +R++ P ++A ++ + E
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAA-LDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
+ G++ I++ R
Sbjct: 131 LEDKGQVLNIQMRR 144
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 57/180 (31%), Positives = 94/180 (52%)
Query: 4 EKVPPGCDTS-AKPNSRSENEE--IPFVKPDEDLTKR-----IIDQVEFYFSDENIVKDA 55
EK P T A+ NS+ E P K KR I Q+EFYF D N+ KD
Sbjct: 21 EKPDPAAPTEPAEENSKEPAPEDASPDKKDGGRKRKRHLFNSIRGQMEFYFGDANLSKDR 80
Query: 56 FLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPL 115
FL ++V+++ +V L++ +F ++K L++D + +A AL+ S+ L+++E K++R L
Sbjct: 81 FLRRYVEQDP--YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKL 138
Query: 116 PAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR-PGKYTKYGNTRHFSF 174
P DQ + + + P +AT + + E+F G +A + L PG TK + F+F
Sbjct: 139 P--DQRDVNDKTLYVEALPANATHDWLKEVFSRYGPVAYVSLPHYPG--TK--KIKEFAF 192
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 168 (64.2 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 46/134 (34%), Positives = 76/134 (56%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+VSL+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPQDKFLKEQIKLD-EGWVSLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSE-KL-QINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ KL +++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>CGD|CAL0004304 [details] [associations]
symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] [GO:0034307
"regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
KEGG:cal:CaO19.2795 Uniprot:Q59PU8
Length = 324
Score = 164 (62.8 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 39/106 (36%), Positives = 63/106 (59%)
Query: 27 FVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86
FV ED +++ QVEFYFSD N+ D FL K + N +G+V LK I +F R++ +
Sbjct: 4 FVYQGEDFDEKVRKQVEFYFSDSNLQTDKFLWKIYESN-DGWVELKTILTFGRMRQYRPE 62
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINI 132
+V++ AL +S+KL ++ IRR DP+ +++ +R I+I
Sbjct: 63 DKVIS-ALKESKKLVLSANNDMIRRKDPIKDFNEVKNTRKRNTIHI 107
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/174 (29%), Positives = 80/174 (45%)
Query: 8 PGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEG 67
P + KP SR + + P+ + R + QVEFYFS+ N D FL ++N +G
Sbjct: 5 PQQEEQEKPQSRRNSFAVIEFTPE--VLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DG 61
Query: 68 FVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTP---- 123
+V + I++F R+K +V+ AL SE L+++ G ++R PL
Sbjct: 62 WVPISTIATFNRMKKYRPVDKVIE-ALRSSEILEVSADGENVKRRVPLDLTAARNARIEQ 120
Query: 124 -SRTIVAINIPPESATIELVAEM-------FKPCGEIALIRLLRPGKYTKYGNT 169
RT+ +N P E + E+ FK GEI +RL R + K+ T
Sbjct: 121 NQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNKKFNGT 174
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 45/134 (33%), Positives = 75/134 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSE-KL-QINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ KL +++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 163 (62.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 43/134 (32%), Positives = 74/134 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ ++++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/87 (41%), Positives = 56/87 (64%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 94 LAKS--EKLQINEQGTKIRRVD--PLP 116
L+KS E ++I+E TKIRR PLP
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLP 98
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/134 (32%), Positives = 74/134 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ ++++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/134 (32%), Positives = 74/134 (55%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L +I Q+E+YF D N+ +D FL + +K + EG+V L+ + F R+ L+ D+ V+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L+KS+ ++++ TKIRR PLP Y +R++ P + AT++ + E
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTD-ATLDDIKEW 130
Query: 146 FKPCGEIALIRLLR 159
G+I I++ R
Sbjct: 131 LDDKGQILNIQMRR 144
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 45/140 (32%), Positives = 73/140 (52%)
Query: 11 DTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVS 70
D P +E F K + + II QVE+YF D N+ +D FL + + +N++G+V
Sbjct: 31 DAKKDPAPAAEEAAGGFTKQE----RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVP 86
Query: 71 LKLISSFKRVKHLSKDWRVVAFALAKSEK--LQINEQGTKIRRVD--PLPAYDQTT---- 122
L ++ +FKR+ LS D + AL KSE+ ++I+E +RR P+P +++
Sbjct: 87 LSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEI 146
Query: 123 PSRTIVAINIPPESATIELV 142
RT A P +S EL+
Sbjct: 147 QERTAYAKGFPLDSQISELL 166
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 149 (57.5 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 45/136 (33%), Positives = 73/136 (53%)
Query: 34 LTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFA 93
L K++ +Q+E+YF D N+ +D FL + ++ + +G+V L+ + F R+K L+ + V+ +
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLD-DGWVPLETMLKFNRLKSLTSEESVIVES 68
Query: 94 LAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELVAEM 145
L KS+ L+I+E TKIRR PLP Y ++I P E+ T++ V E
Sbjct: 69 LLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLET-TLDDVKEW 127
Query: 146 FKPCGEIALIRLLRPG 161
G I LR G
Sbjct: 128 LADKGTFENI-YLRKG 142
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 154 (59.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/115 (35%), Positives = 65/115 (56%)
Query: 12 TSAKPNSRSENEEIPFV---------KP--DEDLTKRIIDQVEFYFSDENIVKDAFLLKH 60
TS N N IPF +P D+ L + + Q+E+YFS+EN+ KD FL +
Sbjct: 546 TSPVSNGEPINTAIPFAPIYNPPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRR- 604
Query: 61 VKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRR-VDP 114
K EG++ + LI+SF RV+ L++D+ ++ AL S K+ ++ G +IR V+P
Sbjct: 605 -KMGPEGYLPVALIASFPRVRSLTEDYSLILEALKDSTKVDMSPDGLQIRAPVNP 658
>TAIR|locus:2017809 [details] [associations]
symbol:La2 "La protein 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
Length = 399
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 47/143 (32%), Positives = 76/143 (53%)
Query: 31 DEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHL------- 83
+E+ K+++ QVEFYFSD N+ D FL + V ++K+G VSL L+ SF R+++L
Sbjct: 6 NEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNIN 65
Query: 84 SKDW--RVV---AFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPS---RTIVAINIPPE 135
+D R+V A L S+ L+++ G +I R L ++ RT+ A P E
Sbjct: 66 REDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAAS--PFE 123
Query: 136 -SATIELVAEMFKPCGEIALIRL 157
S +E V+ F ++ +RL
Sbjct: 124 YSIKMEDVSSFFSQYAKVNSVRL 146
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 43/147 (29%), Positives = 77/147 (52%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
+D ++II Q+E+YF + N+ +D FL + +K + +G+V + + +F R+ +SKD +A
Sbjct: 10 DDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLASISKDTEKIA 68
Query: 92 FALAKSEK--LQINEQGTKIRRVD--PLPA----YDQTTPSRTIVAINIPPESATIELV- 142
A+ S + ++E KIRR + P+P Y Q RT+ ++ +++
Sbjct: 69 NAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQ 128
Query: 143 -AEMFKPCGEIALIRLLRPGKYTKYGN 168
A F E L+R L+PG T G+
Sbjct: 129 WANQFGET-ENVLMRRLKPGDRTFKGS 154
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 50/145 (34%), Positives = 75/145 (51%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVK-HL----SK- 85
E+ K ++ QVEFYFSD N+ D FL K V +++G VSL LI SF +++ +L SK
Sbjct: 8 EETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKG 67
Query: 86 -----DW-RVVAFALAKSEKLQINEQGTKI-RRVDPLPAYD--QTTPSRTIVAINIPPES 136
D + VA L S L+I++ G K+ R + L D + +RT+ A P S
Sbjct: 68 DDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAA---SPFS 124
Query: 137 ATI--ELVAEMFKPCGEIALIRLLR 159
+ E V F G++ +R+ R
Sbjct: 125 YDVKREDVESFFSQYGKVNSVRMPR 149
>ASPGD|ASPL0000062948 [details] [associations]
symbol:AN1288 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001308 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACD01000017 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG46MFST RefSeq:XP_658892.1
EnsemblFungi:CADANIAT00001332 GeneID:2877068 KEGG:ani:AN1288.2
HOGENOM:HOG000208218 OMA:TFSYAQA Uniprot:Q5BDU2
Length = 734
Score = 136 (52.9 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 31/82 (37%), Positives = 53/82 (64%)
Query: 41 QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAFALA--KSE 98
Q+++YFS +N+ KD +L KH+ + +GFV+L +I++FKRVK LS+D+ ++ A K+
Sbjct: 579 QLDYYFSVDNLCKDIYLRKHM--DSQGFVALNVIANFKRVKQLSEDFELLRHASRQLKAA 636
Query: 99 KLQINEQGTKIRRVDPLPAYDQ 120
+ E G I R+ P ++Q
Sbjct: 637 EYHAGEDG--IDRLRPRERWEQ 656
>UNIPROTKB|Q96J85 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000004803
UniGene:Hs.26613 DNASU:113251 GeneID:113251 KEGG:hsa:113251
CTD:113251 HGNC:HGNC:24320 PharmGKB:PA142671566 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 RefSeq:NP_001164275.1 EMBL:AY004310
IPI:IPI01012507 SMR:Q96J85 STRING:Q96J85 Ensembl:ENST00000518561
HOVERGEN:HBG062469 Uniprot:Q96J85
Length = 375
Score = 131 (51.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 47 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 104
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 105 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKGLFK 150
>UNIPROTKB|E9PDG5 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 UniGene:Hs.26613
DNASU:113251 GeneID:113251 KEGG:hsa:113251 CTD:113251
HGNC:HGNC:24320 ChiTaRS:LARP4 GenomeRNAi:113251 NextBio:78808
IPI:IPI00418689 RefSeq:NP_001164275.1 ProteinModelPortal:E9PDG5
SMR:E9PDG5 Ensembl:ENST00000522085 ArrayExpress:E9PDG5 Bgee:E9PDG5
Uniprot:E9PDG5
Length = 445
Score = 131 (51.2 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 117 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 174
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 175 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKGLFK 220
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 132 (51.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 31 DEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVV 90
D L ++ Q+++YFSDEN++ D +L + N EGFV L++++ FK+V L+ + + +
Sbjct: 366 DPPLHMKLHKQIQYYFSDENLITDIYLRGFM--NNEGFVPLRVVAGFKKVAELTDNIQQI 423
Query: 91 AFALAKSEKLQINEQGTKIRRVD 113
AL S +++ QG IR+ D
Sbjct: 424 VEALQNSPHVEV--QGDFIRKRD 444
>DICTYBASE|DDB_G0289333 [details] [associations]
symbol:DDB_G0289333 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289333 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
EMBL:AAFI02000139 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 RefSeq:XP_636262.1
ProteinModelPortal:Q54HN9 EnsemblProtists:DDB0188365 GeneID:8627081
KEGG:ddi:DDB_G0289333 InParanoid:Q54HN9 OMA:YADMIAM
ProtClustDB:CLSZ2846640 Uniprot:Q54HN9
Length = 621
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 37/126 (29%), Positives = 68/126 (53%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
ED K+ Q+E+Y S EN+ D +L + N E FV++++I++FK VK+L+ D ++
Sbjct: 23 EDAIKK---QIEYYLSRENLSTDYYLTSRM--NNEMFVAIEVIANFKMVKNLTTDMNLIV 77
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGE 151
++KS + I+E T I+ P++ R I+ + P +E + +F G+
Sbjct: 78 EVMSKSSNVIIDETKTLIK-----PSFKL---QRNIIILRDIPTETPVEEIRGIFSETGK 129
Query: 152 -IALIR 156
I+ +R
Sbjct: 130 TISSVR 135
>UNIPROTKB|F1SH87 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417
EMBL:AEMK01178304 EMBL:CU856260 EMBL:CU984599
Ensembl:ENSSSCT00000000235 OMA:CKEYEIM Uniprot:F1SH87
Length = 699
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 115 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 172
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 173 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKALFK 218
>UNIPROTKB|E2R028 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 CTD:113251
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
RefSeq:XP_534803.2 Ensembl:ENSCAFT00000013044 GeneID:477609
KEGG:cfa:477609 Uniprot:E2R028
Length = 721
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 114 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 171
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 172 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKALFK 217
>UNIPROTKB|F1PIU8 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
Ensembl:ENSCAFT00000013013 Uniprot:F1PIU8
Length = 723
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 116 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 173
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 174 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKALFK 219
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 136 (52.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 22 NEEIPFVKPDEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRV 80
N +++ D + K I QVE+YFS +N+ D FL + K + EG++ + LI+SF RV
Sbjct: 716 NVPAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRR--KMDPEGYIPVTLIASFHRV 773
Query: 81 KHLSKDWRVVAFALAKSEKLQINEQGTKIR 110
L+ D V+ A+ +S+KL++ E G K+R
Sbjct: 774 LALTTDVAVIVNAIKESDKLELFE-GYKVR 802
>UNIPROTKB|G3XAA8 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CH471111 GO:GO:0030529
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 RefSeq:NP_001164279.1 UniGene:Hs.26613 GeneID:113251
KEGG:hsa:113251 CTD:113251 HGNC:HGNC:24320 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 ProteinModelPortal:G3XAA8
SMR:G3XAA8 PRIDE:G3XAA8 Ensembl:ENST00000293618 ArrayExpress:G3XAA8
Bgee:G3XAA8 Uniprot:G3XAA8
Length = 653
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 117 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 174
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 175 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKGLFK 220
>UNIPROTKB|Q71RC2 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IMP] [GO:0022604 "regulation
of cell morphogenesis" evidence=IMP] InterPro:IPR000504
PROSITE:PS50102 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:CH471111 GO:GO:0022604
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 EMBL:AK055521 EMBL:AK125113 EMBL:AK291746
EMBL:AF370416 EMBL:BX647457 EMBL:CR936626 IPI:IPI00043638
IPI:IPI00395347 IPI:IPI00797384 IPI:IPI00982060
RefSeq:NP_001164279.1 RefSeq:NP_443111.4 RefSeq:NP_954658.2
UniGene:Hs.26613 PDB:2CQK PDB:3PKN PDBsum:2CQK PDBsum:3PKN
ProteinModelPortal:Q71RC2 SMR:Q71RC2 IntAct:Q71RC2 STRING:Q71RC2
PhosphoSite:Q71RC2 DMDM:189047131 PaxDb:Q71RC2 PRIDE:Q71RC2
DNASU:113251 Ensembl:ENST00000347328 Ensembl:ENST00000398473
Ensembl:ENST00000429001 Ensembl:ENST00000518444
Ensembl:ENST00000520064 GeneID:113251 KEGG:hsa:113251
UCSC:uc001rwm.3 UCSC:uc001rws.2 UCSC:uc009zlr.1 CTD:113251
GeneCards:GC12P050794 HGNC:HGNC:24320 HPA:HPA039306 HPA:HPA039673
neXtProt:NX_Q71RC2 PharmGKB:PA142671566 OMA:WTIANME ChiTaRS:LARP4
EvolutionaryTrace:Q71RC2 GenomeRNAi:113251 NextBio:78808
PMAP-CutDB:Q71RC2 ArrayExpress:Q71RC2 Bgee:Q71RC2 CleanEx:HS_LARP4
Genevestigator:Q71RC2 GermOnline:ENSG00000161813 Uniprot:Q71RC2
Length = 724
Score = 131 (51.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D ++
Sbjct: 117 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLIL 174
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 175 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKGLFK 220
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 238 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDSDGFLPITLIASFHRVQALTTDISL 295
Query: 90 VAFALAKSEKLQINEQGTKIRR 111
+ AL S+ ++I +Q KIRR
Sbjct: 296 IIKALKDSKVVEIVDQ--KIRR 315
>UNIPROTKB|F1MHD9 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:DAAA02012927 IPI:IPI01002357 Ensembl:ENSBTAT00000022821
Uniprot:F1MHD9
Length = 621
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/116 (30%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
E+L + + Q+EF FS EN+ KD +L+ + + + FV + +++ + +K L+ D ++
Sbjct: 116 EELKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEEIKKLTTDPDLIL 173
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ IE V +FK
Sbjct: 174 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPIEEVKALFK 219
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 254 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPMTLIASFHRVQALTTDISL 311
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S+ ++I E+ + RR +P
Sbjct: 312 IFAALKDSKVVEIVEEKVR-RREEP 335
>MGI|MGI:2443114 [details] [associations]
symbol:Larp4 "La ribonucleoprotein domain family, member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007010 "cytoskeleton organization" evidence=ISO]
[GO:0022604 "regulation of cell morphogenesis" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2443114
GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 CTD:113251 EMBL:AK049756 EMBL:AK141743
IPI:IPI00828620 RefSeq:NP_001019697.2 UniGene:Mm.28811
UniGene:Mm.490671 ProteinModelPortal:Q8BWW4 SMR:Q8BWW4
PhosphoSite:Q8BWW4 PaxDb:Q8BWW4 PRIDE:Q8BWW4 GeneID:207214
KEGG:mmu:207214 UCSC:uc007xql.1 InParanoid:Q8BWW4 OrthoDB:EOG44MXRZ
NextBio:371897 CleanEx:MM_LARP4 Genevestigator:Q8BWW4
GermOnline:ENSMUSG00000023025 Uniprot:Q8BWW4
Length = 719
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 34/116 (29%), Positives = 64/116 (55%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+EF FS EN+ KD +L+ + + + FV + +++ + +K L+ + ++
Sbjct: 113 EDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEEIKKLTTNTDLIL 170
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E+G K+R P++ R IV + PE+ +E V +FK
Sbjct: 171 EVLRSSPMVQVDEKGEKVR-----PSH-----KRCIVILREIPETTPVEEVKALFK 216
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 131 (51.2 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 38/106 (35%), Positives = 64/106 (60%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 399 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQALTTDISL 456
Query: 90 VAFALAKSEKLQINEQGTKIRRVD-----PLPA---YDQTTPSRTI 127
+ AL S+ ++I ++ K+RR + PLP Y QT S+ +
Sbjct: 457 IFAALKDSKVVEIVDE--KVRRREEPEKWPLPPIVDYSQTDFSQLL 500
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 128 (50.1 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 326 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQALTTDISL 383
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S+ +++ E+ + RR +P
Sbjct: 384 IFAALKDSKVVEMVEEKVR-RREEP 407
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 128 (50.1 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
D++L K I Q+E+YFS +N+ +D FL + K + +GF+ + LI+SF RV+ L+ D +
Sbjct: 374 DQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQALTTDISL 431
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S+ +++ E+ + RR +P
Sbjct: 432 IFAALKDSKVVEMVEEKVR-RREEP 455
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/116 (30%), Positives = 62/116 (53%)
Query: 31 DEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVV 90
D L +I+ QVE+YFS +N+ +D L + N EG+V +++I++F+R+ L+ + + +
Sbjct: 332 DAILYNKILTQVEYYFSADNLSRDEHLRDQM--NDEGWVPVRVIAAFRRLAELTNNIQTI 389
Query: 91 AFALAKSEKLQINEQGTKIRRVDPLPAYD-QTTPSRTIVAINIPPESATIELVAEM 145
AL SE ++I QG +RR Y PSR+ A ++ + + M
Sbjct: 390 LEALRSSEVVEI--QGETLRRRGDWDKYLLPREPSRSGPAAGASNNASLVSQIESM 443
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 126 (49.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
ED+ + + Q+EF FS EN+ KD +L+ + + + FV + I++ + +K L+ D ++
Sbjct: 117 EDIRECLRKQLEFCFSRENLSKDLYLMSQM--DSDQFVPIWTIANMEGIKKLTTDMDLIL 174
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E G K+R P + R I+ + PE+ +E V +FK
Sbjct: 175 DVLRSSPMVQVDETGEKVR-----PNH-----KRCIIILREIPETTPVEEVKALFK 220
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 122 (48.0 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/85 (32%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
+E L K I Q+E+YFS EN+ +D FL K +++GF+ + LI+ F+RV+ L+ + +
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFL--RGKMDEQGFLPISLIAGFQRVQALTTNLNL 268
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S +++I ++ + ++++P
Sbjct: 269 ILEALKDSTEVEIVDEKMR-KKIEP 292
>POMBASE|SPAC1527.03 [details] [associations]
symbol:SPAC1527.03 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005844 "polysome" evidence=ISO] [GO:0006412
"translation" evidence=ISO] PomBase:SPAC1527.03 GO:GO:0005829
EMBL:CU329670 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:P05455
OrthoDB:EOG46MFST RefSeq:NP_594554.1 ProteinModelPortal:Q9P6K0
EnsemblFungi:SPAC1527.03.1 GeneID:2541645 KEGG:spo:SPAC1527.03
NextBio:20802738 Uniprot:Q9P6K0
Length = 475
Score = 123 (48.4 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 33 DLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVAF 92
D+ + Q+E+YFS EN+ KD FL KH+ + EG+V L ++SF R+K S D ++
Sbjct: 324 DVQAFLTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHA 381
Query: 93 ALAKSEKLQI 102
A S+ + +
Sbjct: 382 ACKASDIIDV 391
>FB|FBgn0035424 [details] [associations]
symbol:CG11505 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014296 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:Q71RC2
GeneTree:ENSGT00530000063417 EMBL:BT010118 RefSeq:NP_647793.1
RefSeq:NP_728843.1 RefSeq:NP_995985.2 ProteinModelPortal:Q9I7T7
SMR:Q9I7T7 IntAct:Q9I7T7 MINT:MINT-298656 STRING:Q9I7T7
PaxDb:Q9I7T7 EnsemblMetazoa:FBtr0073046 GeneID:38399
KEGG:dme:Dmel_CG11505 UCSC:CG11505-RB FlyBase:FBgn0035424
InParanoid:Q9VZS2 OMA:TPNINAS OrthoDB:EOG4V15H8 PhylomeDB:Q9I7T7
ChiTaRS:CG11505 GenomeRNAi:38399 NextBio:808431 Bgee:Q9I7T7
Uniprot:Q9I7T7
Length = 1531
Score = 126 (49.4 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/101 (28%), Positives = 56/101 (55%)
Query: 13 SAKPNSRSENE---EIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFV 69
SA P S N E P + P + L + + Q+E+YFS EN+ D +LL + + + +V
Sbjct: 245 SADPQQGSHNAAGGEEPNI-PLDKLKQMLATQLEYYFSRENLANDTYLLSQM--DSDQYV 301
Query: 70 SLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIR 110
+ ++ F V+ L+ D ++ L +S +Q++++G ++R
Sbjct: 302 PIYTVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR 342
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 122 (48.0 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 28/85 (32%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
+E L K I Q+E+YFS EN+ +D FL K +++GF+ + LI+ F+RV+ L+ + +
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFL--RGKMDEQGFLPISLIAGFQRVQALTTNLNL 268
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S +++I ++ + ++++P
Sbjct: 269 ILEALKDSTEVEIVDEKMR-KKIEP 292
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 122 (48.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/85 (32%), Positives = 55/85 (64%)
Query: 31 DEDLTKRIID-QVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
+E L K I Q+E+YFS EN+ +D FL K +++GF+ + LI+ F+RV+ L+ + +
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFL--RGKMDEQGFLPISLIAGFQRVQALTTNLNL 268
Query: 90 VAFALAKSEKLQINEQGTKIRRVDP 114
+ AL S +++I ++ + ++++P
Sbjct: 269 ILEALKDSTEVEIVDEKMR-KKIEP 292
>UNIPROTKB|F1P1X0 [details] [associations]
symbol:LARP4B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 OMA:LITPQTW GeneTree:ENSGT00530000063417
EMBL:AADN02000387 EMBL:AADN02000388 EMBL:AADN02000389
IPI:IPI00596468 Ensembl:ENSGALT00000010791 Uniprot:F1P1X0
Length = 764
Score = 121 (47.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/126 (28%), Positives = 63/126 (50%)
Query: 22 NEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVK 81
NE++ + EDL + + +EF S EN+ D +L+ + + + +V + +++ VK
Sbjct: 171 NEQL-LPEGQEDLRELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHVK 227
Query: 82 HLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIEL 141
LS D ++ L +Q++E+G K+R P +R IV + PES IE
Sbjct: 228 KLSTDMDLIVEVLRSLPLVQVDEKGEKVR-----P-----NQNRCIVILREVPESTPIEE 277
Query: 142 VAEMFK 147
V +FK
Sbjct: 278 VEALFK 283
>UNIPROTKB|E9PGX9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 EMBL:AC009967 HGNC:HGNC:11316
IPI:IPI00917386 ProteinModelPortal:E9PGX9 SMR:E9PGX9 PRIDE:E9PGX9
Ensembl:ENST00000417292 ArrayExpress:E9PGX9 Bgee:E9PGX9
Uniprot:E9PGX9
Length = 120
Score = 98 (39.6 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 77 FKRVKHLSKDWRVVAFALAKS--EKLQINEQGTKIRRVD--PLPA----YDQTTPSRTIV 128
F R+ L+ D+ V+ AL+KS E ++I+E TKIRR PLP Y +R++
Sbjct: 4 FNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 63
Query: 129 AINIPPESATIELVAEMFKPCGEIALIRLLR 159
P + AT++ + E + G++ I++ R
Sbjct: 64 IKGFPTD-ATLDDIKEWLEDKGQVLNIQMRR 93
>DICTYBASE|DDB_G0281835 [details] [associations]
symbol:DDB_G0281835 species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102
dictyBase:DDB_G0281835 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:AAFI02000043
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 RefSeq:XP_640449.1 ProteinModelPortal:Q54TE0
EnsemblProtists:DDB0204237 GeneID:8623262 KEGG:ddi:DDB_G0281835
InParanoid:Q54TE0 OMA:HITEFTE Uniprot:Q54TE0
Length = 381
Score = 113 (44.8 bits), Expect = 0.00011, P = 0.00011
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 42 VEFYFSDENIVKDAFLLKHVKRNK-EGFVSLKLISSFKRVKHLSKDWRVVAFALA---KS 97
+EFYFSD N+ KD FL ++ N+ +G++ L +I F+++K + + + L K
Sbjct: 13 IEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVINENSLTEQELEQVFKD 72
Query: 98 EKLQI-NEQGTKIRRVD-PLPAYDQ 120
KL I N+ KI+R++ P+ Q
Sbjct: 73 SKLLILNQDKNKIKRIEWPIKELTQ 97
>UNIPROTKB|F1M4K9 [details] [associations]
symbol:LOC683071 "Protein LOC683071" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 IPI:IPI00952080
Ensembl:ENSRNOT00000065149 Uniprot:F1M4K9
Length = 574
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 35/116 (30%), Positives = 62/116 (53%)
Query: 32 EDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRVVA 91
EDL + + Q+E FS EN+ KD +L+ + + + FV + I++ + +K L+ D ++
Sbjct: 13 EDLKECLKKQLESCFSRENLSKDLYLISQM--DSDQFVPIWTIANMEEIKKLTTDPDLIL 70
Query: 92 FALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFK 147
L S +Q++E G K+R P++ R IV + PE+ +E V +FK
Sbjct: 71 EVLRSSPMVQVDE-GEKVR-----PSH-----KRCIVILREIPETTPVEEVKALFK 115
>UNIPROTKB|F1MHX7 [details] [associations]
symbol:LARP4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 OMA:LITPQTW GeneTree:ENSGT00530000063417
EMBL:DAAA02036020 IPI:IPI00688568 UniGene:Bt.45835
Ensembl:ENSBTAT00000018457 NextBio:20867284 Uniprot:F1MHX7
Length = 730
Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
Identities = 38/141 (26%), Positives = 67/141 (47%)
Query: 7 PPGCDTSAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKE 66
PP + +S+ E++E P E L K + EF S EN+ D +L+ + + +
Sbjct: 134 PPESGETGGNDSQPESQE----DPREVLKKTL----EFCLSRENLASDMYLISQM--DSD 183
Query: 67 GFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRT 126
+V + +++ +K LS D ++ L +Q++E+G K+R P +R
Sbjct: 184 QYVPITTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVR-----P-----NQNRC 233
Query: 127 IVAINIPPESATIELVAEMFK 147
IV + PES +E V +FK
Sbjct: 234 IVILREIPESTPVEEVEALFK 254
>SGD|S000002923 [details] [associations]
symbol:SLF1 "RNA binding protein that associates with
polysomes" species:4932 "Saccharomyces cerevisiae" [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0006417 "regulation of translation"
evidence=IGI;IMP;IPI] [GO:0006878 "cellular copper ion homeostasis"
evidence=IMP;IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] SGD:S000002923 GO:GO:0005737
GO:GO:0006417 GO:GO:0006878 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:U33057 RefSeq:NP_010803.3
GeneID:852127 KEGG:sce:YDR515W GO:GO:0005844 KO:K09569
RefSeq:NP_010807.3 GeneID:852131 KEGG:sce:YDR519W
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:U30375 EMBL:AY692939 PIR:S59742
ProteinModelPortal:Q12034 SMR:Q12034 DIP:DIP-2938N IntAct:Q12034
MINT:MINT-574898 STRING:Q12034 PaxDb:Q12034 EnsemblFungi:YDR515W
CYGD:YDR515w GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST
NextBio:970519 Genevestigator:Q12034 GermOnline:YDR515W
Uniprot:Q12034
Length = 447
Score = 109 (43.4 bits), Expect = 0.00050, P = 0.00050
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 38 IIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLS 84
I +Q+EFYFS+EN+ D FL K+ +GF+ + LI F R+ +LS
Sbjct: 275 IKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLS 321
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 175 0.00078 109 3 11 22 0.43 32
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 578 (61 KB)
Total size of DFA: 145 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 18.39u 0.10s 18.49t Elapsed: 00:00:27
Total cpu time: 18.40u 0.10s 18.50t Elapsed: 00:00:30
Start: Thu Aug 15 11:08:06 2013 End: Thu Aug 15 11:08:36 2013