RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9843
(175 letters)
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA
binding protein; 1.60A {Trypanosoma brucei} SCOP:
a.4.5.46
Length = 92
Score = 123 bits (310), Expect = 2e-37
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 27 FVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86
+ + +++ QVEFYFSD N+ +D FL + N EGFVSL+ + +FKRV ++ D
Sbjct: 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTD 62
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPLP 116
+ V A+ SEKL ++E G +RR DPLP
Sbjct: 63 VKEVVEAIRPSEKLVLSEDGLMVRRRDPLP 92
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Length = 101
Score = 103 bits (258), Expect = 2e-29
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 30 PDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
EDL + + Q+EF FS EN+ KD +L+ + + + F+ + +++ + +K L+ D +
Sbjct: 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDL 67
Query: 90 VAFALAKSEKLQINEQGTKIRRVD----PLPA 117
+ L S +Q++E+G K+R P+
Sbjct: 68 ILEVLRSSPMVQVDEKGEKVRPSHKRCISGPS 99
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 95.3 bits (236), Expect = 3e-25
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 29 KPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWR 88
+ L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+
Sbjct: 7 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFN 65
Query: 89 VVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIP-------PESATIEL 141
V+ AL+KS+ + K + + P AT++
Sbjct: 66 VIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDD 125
Query: 142 VAEMFKPCGEIALIRLLRPGK 162
+ E + G++ I++ R
Sbjct: 126 IKEWLEDKGQVLNIQMRRTLH 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 42/143 (29%)
Query: 3 KEKVPPGCDTSAKPNS----RSENE--EI--PF----VKP-----DEDLTKRIIDQVEFY 45
K K P G D S P S + N + PF + P ++DL K + V F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK---NNVSFN 451
Query: 46 FSDENI-VKDAFLLKHVKRNKEGFVSLKLISSF--KRVKHLSKDW---------RVVAF- 92
D I V D F + R G +S +++ V W ++ F
Sbjct: 452 AKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPV-----KWETTTQFKATHILDFG 505
Query: 93 --ALAKSEKL-QINEQGTKIRRV 112
+ L N+ GT +R +
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVI 528
Score = 26.9 bits (59), Expect = 4.7
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 57 LLKHVKRNKEGFVSLKLISSFKRVK-HL 83
+L +K K + L+ S + V+ HL
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics,
RRM domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Length = 104
Score = 32.8 bits (75), Expect = 0.012
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 116 PAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
++ + + S + + +LV E + G I + ++ +
Sbjct: 7 GSHHKVSVSPVVHVRGLCESVVEADLV-EALEKFGTICYVMMMPFKRQ 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 119
Score = 33.4 bits (76), Expect = 0.013
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 94 LAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIA 153
+ S + G R + PSR I +P + E++ + P G++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVI-SLGLPFGKVT 59
Query: 154 LIRLLR 159
+ +L+
Sbjct: 60 NLLMLK 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 105
Score = 32.9 bits (75), Expect = 0.015
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 122 TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
PSR I +P + E++ + P G++ + +L+
Sbjct: 14 VPSRVIHIRKLPIDVTEGEVI-SLGLPFGKVTNLLMLK 50
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold,
protein binding, nucleus; 2.04A {Homo sapiens}
Length = 100
Score = 32.0 bits (73), Expect = 0.022
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
+T S + + +LV E + G I+ + ++ +
Sbjct: 17 KTPASPVVHIRGLIDGVVEADLV-EALQEFGPISYVVVMPKKRQ 59
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 101
Score = 31.7 bits (72), Expect = 0.034
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
PSR + +P E T V + P G++ I +L+
Sbjct: 11 DGAPSRVLHIRKLPGE-VTETEVIALGLPFGKVTNILMLK 49
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like,
structural genomics, joint center for struc genomics,
JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Length = 205
Score = 32.4 bits (73), Expect = 0.054
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGK 162
S ++ + + V +F G + ++ ++
Sbjct: 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP 42
Score = 27.0 bits (59), Expect = 3.3
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 4/107 (3%)
Query: 64 NKEGFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTP 123
N K+ + + + S K + + + P
Sbjct: 63 NNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHP 122
Query: 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRP---GKYTKYG 167
S + N P E T E E+ G + + + G
Sbjct: 123 SNVLHFFNAPLE-VTEENFFEICDELGVKRPTSVKVFSGKSERSSSG 168
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 30.1 bits (68), Expect = 0.11
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 117 AYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
+R++ P + AT++ + E + G++ I++ R
Sbjct: 4 ILKNDVKNRSVYIKGFPTD-ATLDDIKEWLEDKGQVLNIQMRR 45
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 31.1 bits (70), Expect = 0.15
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYT 164
+ ++ N+ PE T + + +F G++ +++L K
Sbjct: 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN 74
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project
on protein structural and functional analyses; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 112
Score = 29.5 bits (66), Expect = 0.21
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 113 DPLPAYDQT-TPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
P +DQ R I N+P + V ++ +P G+I L+R
Sbjct: 13 KPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 107
Score = 29.6 bits (67), Expect = 0.21
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 119 DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
+ + I+ NIP + A + E+F GE+ +RL P K T G R F F
Sbjct: 10 PKKQTTSKILVRNIPFQ-ANQREIRELFSTFGELKTVRL--PKKMTGTGAHRGFGF 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project
on protein structural and functional analyses; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 102
Score = 29.1 bits (65), Expect = 0.30
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 121 TTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
R + ++ + ++ +P G I+ +L
Sbjct: 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 28.5 bits (64), Expect = 0.50
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 109 IRRVDP-------LPAYDQTTPSRTIVAIN-IPPESATIELVAEMFKPCGEIALIRLLRP 160
+ V L DQ I+ +N P E + E ++ + + I ++R
Sbjct: 35 VVAVTAGGSAHGKLFPGDQ------ILQMNNEPAEDLSWERAVDILREAEDSLSITVVRC 88
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA
recognition, stress granules, nucleus, RNA-binding,
transcription; NMR {Saccharomyces cerevisiae}
Length = 101
Score = 28.4 bits (64), Expect = 0.53
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 116 PAYDQTTPSRTIVAI-NIPPESATIELVAEMFKPCGEIALIRLLR 159
P T I NIP AT + +F+ G I +
Sbjct: 18 HIIRSAPPRVTTAYIGNIPHF-ATEADLIPLFQNFGFILDFKHYP 61
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 28.7 bits (65), Expect = 0.91
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 20/88 (22%)
Query: 82 H-LSKDWRVV--AFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESAT 138
H + ++ +L E Q ++ P P YD + +
Sbjct: 41 HCIRNKSVILLGRHSLFHPED---TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSS--- 94
Query: 139 IELVAEMFKPCGEIALIRLLRPGKYTKY 166
++ L+RL P + T
Sbjct: 95 -----------HDLMLLRLSEPAELTDA 111
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 27.7 bits (62), Expect = 1.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 119 DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIA 153
+ + TI + + TIE VA+ FK G I
Sbjct: 2 QDNSDNNTIFVQGLGE-NVTIESVADYFKQIGIIK 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 28.5 bits (64), Expect = 1.1
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 106 GTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
G I L ++T R + + P T E +F+ GE + + + R
Sbjct: 3 GFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification,
transcription regulation, structural genomics,
structural genomics consortium; 1.30A {Homo sapiens}
Length = 110
Score = 27.7 bits (62), Expect = 1.1
Identities = 5/37 (13%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
P + + + + + +M + GE+ + +L
Sbjct: 5 PLKEVTFARLND-NVRETFLKDMCRKYGEVEEVEILL 40
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA
binding domain, RNA recognition motif, SP factor, snRNP,
spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP:
d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Length = 292
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
T R I+ N+ E L+ E F+ G I I + K +F
Sbjct: 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEH--SFNNCCAF 258
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 131 NIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
N PP T + ++ + +AL L ++ +R F++
Sbjct: 124 NFPPS-YTQRNIRDLLQDINVVALSIRLPS---LRFNTSRRFAY 163
Score = 26.1 bits (58), Expect = 6.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLR 159
P+S V + FK CG I + +
Sbjct: 50 PKSYNQNKVYKYFKHCGPIIHVDVAD 75
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 28.3 bits (64), Expect = 1.2
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 19/85 (22%)
Query: 84 SKDWRVV--AFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIEL 141
+ V L + E + Q + + P P ++ + +
Sbjct: 44 VDQYEVWLGKNKLFQEEP---SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFS------ 94
Query: 142 VAEMFKPCGEIALIRLLRPGKYTKY 166
++ L+RL +P T
Sbjct: 95 --------DDLMLLRLSKPADITDV 111
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 27.6 bits (61), Expect = 1.2
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 120 QTTPSRTIVAINIP-PESATIELVAEMFKPCGEIALIRLLRPGK 162
+ ++++V N + + + + CG + + + P K
Sbjct: 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNK 63
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA
recognition motif, vincu alpha-actinin, nucleus, RNA
binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E
Length = 284
Score = 28.0 bits (63), Expect = 1.5
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 108 KIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYG 167
+ D SR + +PP ++ + +L + G
Sbjct: 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC----GQDG 223
Query: 168 NTRHFSF 174
+ F+
Sbjct: 224 QLKGFAV 230
Score = 26.5 bits (59), Expect = 5.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 131 NIPPESATIELVAEMFKPCGEIALIRLLR 159
N+PP T + E+ +P G + L+
Sbjct: 102 NLPPS-LTQQQFEELVRPFGSLERCFLVY 129
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 27.0 bits (60), Expect = 1.6
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGN 168
+ R + NIPP E++ + G + + T N
Sbjct: 11 KRQRIRKLQIRNIPP-HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVN 58
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 19/85 (22%)
Query: 84 SKDWRVV--AFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIEL 141
+ ++V + E ++Q + + P P ++ + +
Sbjct: 47 NDKYQVWLGKNNFLEDEP---SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYS------ 97
Query: 142 VAEMFKPCGEIALIRLLRPGKYTKY 166
++ L+RL +P T
Sbjct: 98 --------NDLMLLRLSKPADITDV 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics;
NMR {Mus musculus} SCOP: d.58.7.1
Length = 111
Score = 27.1 bits (60), Expect = 1.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
I+A N+P + E F G + + L G
Sbjct: 10 KTVILAKNLP-AGTLAAEIQETFSRFGSLGRVLLPEGGIT 48
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 27.7 bits (62), Expect = 1.7
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 13 SAKPNSRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKD-AFLLKHVKRNKE----- 66
S KP ++S+ + + + + L + V FS + K L+++V +K+
Sbjct: 2 SEKPTTKSDVKIVEDILRGKKLKFKTDSGV---FSYGKVDKGTKILVENVVVDKDDDILD 58
Query: 67 -----GFVSLKLISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQT 121
G + + L K + R + A + ++ ++ D Y+
Sbjct: 59 LGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD---LYENV 115
Query: 122 TPSR--TIVAINIPPESATIELVAEMFKPCGEIALIRLLRPG 161
+ I+ N PP A E++ + + LL+
Sbjct: 116 KDRKYNKIIT-N-PPIRAGKEVLHRIIE-----EGKELLKDN 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.7
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 41/151 (27%)
Query: 18 SRSENEEIPFVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSF 77
S+ E + I K T R+ + E +V+ FV
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQK-------------FV-------- 83
Query: 78 KRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESA 137
+ L +++ + + ++ I + D L +Q N+
Sbjct: 84 --EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----NVSRLQP 136
Query: 138 TIELVAEMFKPCGEIALIRLLRPGKY-TKYG 167
++L AL+ LRP K G
Sbjct: 137 YLKL---------RQALLE-LRPAKNVLIDG 157
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif,
RRM, transcription termination, NUC phosphoprotein; NMR
{Saccharomyces cerevisiae}
Length = 96
Score = 26.8 bits (60), Expect = 1.8
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 119 DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
P + N+P ++ + E + +F P G I I +
Sbjct: 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 45
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural
genomics, joint center for struc genomics, JCSG, protein
structure initiative; HET: PGE; 1.95A {Homo sapiens}
PDB: 3b4d_A 3b4m_A
Length = 89
Score = 26.7 bits (60), Expect = 1.9
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
+R+I N+ AT E + F CG + + +L
Sbjct: 5 DARSIYVGNVDY-GATAEELEAHFHGCGSVNRVTILC 40
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A)
binding, structural genomics, protein structure
initiative, PSI-2; NMR {Xenopus laevis}
Length = 124
Score = 27.0 bits (60), Expect = 2.0
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 96 KSEKLQINEQGTKIRRVDPLPAYDQT-TPSRTIVAINIPPESATIELVAEMFKPCGEIAL 154
++ ++ PL A ++ R++ N+ +T + + F CG I
Sbjct: 7 QTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDY-GSTAQDLEAHFSSCGSINR 65
Query: 155 IRLLR 159
I +L
Sbjct: 66 ITILC 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related
protein, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 109
Score = 26.5 bits (59), Expect = 2.2
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 118 YDQTTPSRTIVAI-NIPPESATIELVAEMFKPCGEIALIRLLR 159
+Q++P V I T +L+ + F P G+I IR+
Sbjct: 18 VNQSSPKNCTVYCGGIASG-LTDQLMRQTFSPFGQIMEIRVFP 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 26.6 bits (59), Expect = 2.2
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
+R + N+P T E + ++F G I IR+ + TR ++
Sbjct: 7 VNRILYIRNLP-YKITAEEMYDIFGKYGPIRQIRVGNTPE------TRGTAY 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A
2dno_A
Length = 105
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
+ + E V +F+P G I +LR G+++ +F
Sbjct: 24 NKQQSEEDVLRLFQPFGVIDECTVLR----GPDGSSKGCAF 60
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 27.5 bits (62), Expect = 2.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 124 SRTIVAINIPPES-----ATIELVAEMFK 147
S+TIVAIN PE+ A +VA++FK
Sbjct: 275 SKTIVAINKDPEAPIFQVADYGIVADLFK 303
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 27.5 bits (62), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 124 SRTIVAINIPPES-----ATIELVAEMFK 147
S+ IVAIN E+ A LV ++F
Sbjct: 270 SKVIVAINKDEEAPIFQIADYGLVGDLFS 298
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, RNA recognition; NMR {Homo sapiens}
Length = 99
Score = 26.1 bits (58), Expect = 2.9
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 114 PLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIA 153
+ + + TI + + TIE VA+ FK G I
Sbjct: 3 HHHHHHSHSDNNTIFVQGLGE-NVTIESVADYFKQIGIIK 41
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Length = 110
Score = 26.2 bits (58), Expect = 3.2
Identities = 7/57 (12%), Positives = 19/57 (33%)
Query: 103 NEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
+ K++ + D + + + N+ V +F G +A + +
Sbjct: 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK 62
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 26.8 bits (60), Expect = 3.2
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 20/88 (22%)
Query: 82 H-LSKDWRVV--AFALAKSEKLQINEQGTKIRRVDPLPAYDQTTPSRTIVAINIPPESAT 138
H S +++V+ L K E Q +R+ P Y +
Sbjct: 39 HCYSNNYQVLLGRNNLFKDEP---FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHS--- 92
Query: 139 IELVAEMFKPCGEIALIRLLRPGKYTKY 166
++ L+ L P T
Sbjct: 93 -----------NDLMLLHLSEPADITGG 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed
protein, RRM, U1A, RNA binding protein; NMR {Homo
sapiens}
Length = 127
Score = 26.4 bits (58), Expect = 3.4
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 109 IRRVDPLPAYDQTTPSRTIVAINIPP---ESATIELVAEMFKPCGEIALIRLLRPGKYTK 165
+ D T PS+ ++ NI P + L+ + G+I I + +
Sbjct: 14 MDSPDLGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSG 73
Query: 166 YG 167
Sbjct: 74 KA 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 26.1 bits (58), Expect = 3.5
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 105 QGTKIRRVDPLPAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
G R + +RT+ + + + + F G++ +R++
Sbjct: 6 SGKSPVREPVDNLSPEERDARTVFCMQLAA-RIRPRDLEDFFSAVGKVRDVRIIS 59
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA,
spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1
d.58.7.1
Length = 198
Score = 26.8 bits (59), Expect = 3.8
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYT 164
+ ++ N+ PE T + + +F G++ +++L K
Sbjct: 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN 43
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics;
NMR {Mus musculus} SCOP: d.58.7.1
Length = 97
Score = 25.7 bits (57), Expect = 3.8
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 118 YDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
Y + P+ + + P + ++ +A F G I I ++ +
Sbjct: 11 YGKANPTTRLWVGGLGP-NTSLAALAREFDRFGSIRTIDHVKGDSF 55
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 26.7 bits (58), Expect = 4.0
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 110 RRVDPLPAYDQTTPSRTIVAINIPP--------ESATIELVAEMFKPCGEIALIRLLR 159
R D ++T+ I + + +F G+I IR +
Sbjct: 120 YREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE 177
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif,
RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 111
Score = 26.0 bits (57), Expect = 4.0
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 130 INIPPESATIEL--VAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
+ + A E+ E F G+I + + Y ++
Sbjct: 21 VGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAY 67
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 25.7 bits (57), Expect = 4.3
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 105 QGTKIRRVDPLPAYDQTTPSRTIVAI-NIPPESATIELVAEMFKPCGEIALIRLLR 159
+ R + + S T + + P + + E+F P G + +++L
Sbjct: 11 SSGLVPRGSHMHHRQEGELSNTRLFVRPFPLD-VQESELNEIFGPFGPMKEVKILN 65
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing,
transcription, RNA binding protein, mRNA processing; NMR
{Homo sapiens} PDB: 2yh1_A
Length = 198
Score = 26.5 bits (59), Expect = 4.6
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSFG 175
+R + NIP T E + + F + + + +F
Sbjct: 3 MARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFA 54
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 26.9 bits (58), Expect = 4.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPL 115
W + F++ L I ++ + V P
Sbjct: 638 WYLTGFSIDPVYGLGIIKKPIQFTTVQPF 666
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 26.8 bits (59), Expect = 5.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 152 IALIRLLRPGKYTKY 166
IAL++L R + K+
Sbjct: 224 IALLKLNRSVPFQKH 238
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex,
AU-rich element, transcription/RNA complex; 1.80A {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H
1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 26.0 bits (58), Expect = 5.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLR 159
P++ T E +F GEI +L+R
Sbjct: 11 PQNMTQEEFRSLFGSIGEIESCKLVR 36
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 96
Score = 25.3 bits (56), Expect = 6.0
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 119 DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIR 156
+ +RT++A N+ + T + + E+F+ EI L+
Sbjct: 11 KKVRAARTLLAKNLS-FNITEDELKEVFEDALEIRLVS 47
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 26.1 bits (58), Expect = 6.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 152 IALIRLLRPGKYTKY 166
IALIRL R ++T Y
Sbjct: 134 IALIRLNRQVEFTNY 148
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 113
Score = 25.1 bits (55), Expect = 7.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 134 PESATIELVAEMFKPCGEIA 153
+S T++ +A+ FK CG +
Sbjct: 24 NDSVTLDDLADFFKQCGVVK 43
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 25.6 bits (57), Expect = 7.3
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLR 159
P+ T + +F+ G I R++R
Sbjct: 12 PQDMTDRELYALFRAIGPINTCRIMR 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo
sapiens} SCOP: d.58.7.1
Length = 106
Score = 24.9 bits (55), Expect = 7.7
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 116 PAYDQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
P ++ + + E AT E + + F GEI I L
Sbjct: 15 PGPQRSVEGWILFVTGVH-EEATEEDIHDKFAEYGEIKNIHLNL 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition
motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 99
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 131 NIPPESATIELVAEMFKPCGEIALIRLLRP 160
N+PP T E + ++F+ G+ + + +
Sbjct: 22 NLPP-DITEEEMRKLFEKYGKAGEVFIHKD 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex,
mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB:
2x1b_A 2x1a_A 2km8_B
Length = 96
Score = 24.9 bits (55), Expect = 9.0
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 123 PSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLR 159
PSR + +IP + T E + ++ G + ++++
Sbjct: 1 PSRVVYLGSIPYD-QTEEQILDLCSNVGPVINLKMMF 36
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 24.6 bits (54), Expect = 9.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 131 NIPPESATIELVAEMFKPCGEIALIRLLR 159
N+P ++ + E + +F P G I I +
Sbjct: 29 NLPLKNVSKEDLFRIFSPYGHIMQINIKN 57
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 25.6 bits (57), Expect = 9.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 152 IALIRLLRPGKYTKY 166
I LIRL RP Y+ +
Sbjct: 89 IMLIRLRRPVTYSTH 103
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA
binding protein-RNA complex; 1.85A {Homo sapiens} PDB:
3nna_A 3nnc_A 2dhs_A 3nnh_A
Length = 175
Score = 25.3 bits (56), Expect = 9.4
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
P + + + + E+F+ G + I +LR + ++ F
Sbjct: 12 PRTWSEKDLRELFEQYGAVYEINVLR-DRSQNPPQSKGCCF 51
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP,
RBD, poly(U) binding, tandem, acetylation, cytopla
nucleus; 2.70A {Saccharomyces cerevisiae}
Length = 166
Score = 25.2 bits (56), Expect = 9.6
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 134 PESATIELVAEMFKPCGEIALIRLLR 159
++ T +++ + F+ G IA I+++
Sbjct: 9 DKAITEDILKQYFQVGGPIANIKIMI 34
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 24.5 bits (54), Expect = 10.0
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 120 QTTPSRTIVAI-NIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
+ T + + + + T + F GEI I +++ +
Sbjct: 7 GEDKTITTLYVGGLGD-TITETDLRNHFYQFGEIRTITVVQRQQC 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,682,487
Number of extensions: 155630
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 86
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)