RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9843
(175 letters)
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 118 bits (298), Expect = 5e-36
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 27 FVKPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKD 86
+ + +++ QVEFYFSD N+ +D FL + N EGFVSL+ + +FKRV ++ D
Sbjct: 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTD 62
Query: 87 WRVVAFALAKSEKLQINEQGTKIRRVDPLP 116
+ V A+ SEKL ++E G +RR DPLP
Sbjct: 63 VKEVVEAIRPSEKLVLSEDGLMVRRRDPLP 92
>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 103 bits (260), Expect = 2e-30
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 30 PDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWRV 89
EDL + + Q+EF FS EN+ KD +L+ + + F+ + +++ + +K L+ D +
Sbjct: 3 STEDLKECLKKQLEFCFSRENLSKDLYLISQ--MDSDQFIPIWTVANMEEIKKLTTDPDL 60
Query: 90 VAFALAKSEKLQINEQGTKIRRVD 113
+ L S +Q++E+G K+R
Sbjct: 61 ILEVLRSSPMVQVDEKGEKVRPSH 84
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 99.9 bits (249), Expect = 1e-28
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 29 KPDEDLTKRIIDQVEFYFSDENIVKDAFLLKHVKRNKEGFVSLKLISSFKRVKHLSKDWR 88
+ L +I Q+E+YF D N+ +D FL + +K + EG+V L+++ F R+ L+ D+
Sbjct: 4 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFN 62
Query: 89 VVAFALAKS--EKLQINEQGTKIRRVDPLPAYDQT 121
V+ AL+KS E ++I+E TKIRR P + T
Sbjct: 63 VIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVT 97
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 31.8 bits (72), Expect = 0.011
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 119 DQTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRH 171
D + + + N+ V +F G+I + + + +Y N R+
Sbjct: 10 DPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.8 bits (69), Expect = 0.023
Identities = 5/44 (11%), Positives = 15/44 (34%)
Query: 120 QTTPSRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKY 163
+ R + ++ + ++ +P G I+ +L
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINE 47
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 324
Score = 25.3 bits (54), Expect = 4.1
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 74 ISSFKRVKHLSKDWRVVAFALAKSEKLQINEQGTKIRRVDPLPAYD 119
I + ++ +V F + E Q++ +R + P+ D
Sbjct: 260 IPKSVTPSRIPQNIQVFDFTFSPEEMKQLDALNKNLRFIVPMLTVD 305
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 24.7 bits (54), Expect = 4.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 124 SRTIVAINIPPES-----ATIELVAEMFKPCGEIALIRLLR 159
S+TIVAIN PE+ A +VA++FK E + +L+
Sbjct: 86 SKTIVAINKDPEAPIFQVADYGIVADLFKVVPE--MTEILK 124
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 24.3 bits (52), Expect = 4.5
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 118 YDQTTPSRTIVAINIPPESATIELVAEMFKPC 149
Y + P+ + + P ++ +A F
Sbjct: 11 YGKANPTTRLWVGGLGPN-TSLAALAREFDRF 41
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 23.7 bits (51), Expect = 5.6
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 131 NIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
++ P+ T ++ E F P G I IR+ R + + +F
Sbjct: 7 DLHPD-VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 49
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.6 bits (50), Expect = 7.5
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 125 RTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSFG 175
R + NIP T E + + F + + + +F
Sbjct: 2 RRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFA 51
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 24.2 bits (51), Expect = 8.5
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 124 SRTIVAINIPPESATIELVAEMFKPCGEIALIRLLRPGKYTKYGNTRHFSF 174
R + + E T E + F+ G + ++R + ++
Sbjct: 6 LRKLFIGGLSFE-TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,666
Number of extensions: 29699
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 19
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)