Query psy9845
Match_columns 261
No_of_seqs 195 out of 1230
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_A 40S ribosomal protein S 100.0 2.7E-51 9.2E-56 369.2 10.2 121 4-124 95-218 (252)
2 2xzm_B RPS0E; ribosome, transl 100.0 3.3E-51 1.1E-55 366.1 10.3 146 4-150 91-239 (241)
3 3iz6_A 40S ribosomal protein S 100.0 1.3E-50 4.4E-55 372.9 10.5 120 5-124 101-222 (305)
4 2zkq_b 40S ribosomal protein S 100.0 1.6E-50 5.5E-55 370.9 8.9 128 4-131 96-225 (295)
5 3bch_A 40S ribosomal protein S 100.0 1.1E-48 3.7E-53 352.5 10.4 122 5-126 130-253 (253)
6 3j20_B 30S ribosomal protein S 100.0 4.9E-39 1.7E-43 281.2 10.8 108 4-111 89-198 (202)
7 1vi6_A 30S ribosomal protein S 100.0 8.9E-39 3E-43 280.8 9.4 106 5-115 94-201 (208)
8 2vqe_B 30S ribosomal protein S 100.0 1.2E-29 4E-34 228.6 9.1 79 21-101 155-233 (256)
9 3r8n_B 30S ribosomal protein S 100.0 2.5E-30 8.6E-35 227.9 4.7 70 23-92 148-217 (218)
10 3bbn_B Ribosomal protein S2; s 99.9 1.9E-28 6.4E-33 217.8 7.7 74 21-94 154-227 (231)
11 1m3s_A Hypothetical protein YC 87.0 2.9 9.9E-05 33.1 8.1 74 21-94 76-173 (186)
12 2yva_A DNAA initiator-associat 79.6 5.5 0.00019 31.8 6.9 70 20-89 105-187 (196)
13 1vim_A Hypothetical protein AF 75.1 9.3 0.00032 31.1 7.2 49 21-69 86-140 (200)
14 3knz_A Putative sugar binding 74.3 8.2 0.00028 35.2 7.3 75 22-96 95-184 (366)
15 2xbl_A Phosphoheptose isomeras 73.7 12 0.00039 29.7 7.3 51 20-70 112-168 (198)
16 2i2w_A Phosphoheptose isomeras 73.5 10 0.00036 31.0 7.2 51 20-70 127-183 (212)
17 2xhz_A KDSD, YRBH, arabinose 5 73.0 14 0.00047 29.0 7.5 48 22-69 94-147 (183)
18 3g68_A Putative phosphosugar i 70.9 8.9 0.0003 34.5 6.7 73 24-96 82-169 (352)
19 2a3n_A Putative glucosamine-fr 68.0 11 0.00038 33.7 6.6 71 22-93 100-178 (355)
20 1jeo_A MJ1247, hypothetical pr 66.5 21 0.00073 27.9 7.3 73 21-93 79-166 (180)
21 2aml_A SIS domain protein; 469 66.0 23 0.00078 32.0 8.3 75 22-96 95-185 (373)
22 3sho_A Transcriptional regulat 65.3 24 0.00082 27.7 7.4 51 21-71 84-140 (187)
23 3etn_A Putative phosphosugar i 65.1 29 0.00099 28.8 8.3 73 21-93 103-195 (220)
24 3fxa_A SIS domain protein; str 63.5 28 0.00094 27.9 7.6 72 22-93 90-179 (201)
25 3trj_A Phosphoheptose isomeras 60.0 30 0.001 28.4 7.4 57 18-74 108-173 (201)
26 1nri_A Hypothetical protein HI 59.4 18 0.00062 31.9 6.3 83 21-107 137-236 (306)
27 3ga2_A Endonuclease V; alpha-b 58.2 19 0.00064 32.4 6.2 72 3-74 83-164 (246)
28 1moq_A Glucosamine 6-phosphate 54.7 17 0.00059 32.5 5.4 72 22-93 97-184 (368)
29 3goc_A Endonuclease V; alpha-b 53.3 30 0.001 30.9 6.7 69 3-74 81-159 (237)
30 1x92_A APC5045, phosphoheptose 52.5 32 0.0011 27.4 6.1 54 20-73 109-171 (199)
31 3tbf_A Glucosamine--fructose-6 51.2 14 0.00048 33.6 4.3 75 22-96 99-189 (372)
32 2zj3_A Glucosamine--fructose-6 50.8 12 0.0004 33.9 3.7 48 23-70 106-159 (375)
33 3gv0_A Transcriptional regulat 49.2 22 0.00074 29.2 4.8 44 23-67 65-108 (288)
34 2poc_A D-fructose-6- PH, isome 49.2 16 0.00054 32.9 4.2 48 23-70 96-149 (367)
35 1tk9_A Phosphoheptose isomeras 48.6 44 0.0015 26.0 6.3 50 21-70 107-162 (188)
36 3k4h_A Putative transcriptiona 44.2 65 0.0022 26.1 6.9 44 23-67 68-112 (292)
37 3kjx_A Transcriptional regulat 43.9 76 0.0026 26.8 7.5 37 23-59 123-159 (344)
38 3eua_A Putative fructose-amino 40.4 57 0.0019 28.8 6.4 72 22-93 72-153 (329)
39 1tjy_A Sugar transport protein 39.7 28 0.00097 29.3 4.1 35 23-58 59-95 (316)
40 1j5x_A Glucosamine-6-phosphate 39.1 32 0.0011 30.6 4.5 45 25-69 101-151 (342)
41 3jx9_A Putative phosphoheptose 38.0 44 0.0015 27.9 5.0 46 21-66 74-127 (170)
42 3md9_A Hemin-binding periplasm 36.6 33 0.0011 28.2 4.0 31 23-53 58-88 (255)
43 2fep_A Catabolite control prot 36.3 1E+02 0.0035 25.2 7.0 35 23-58 71-105 (289)
44 2zkq_b 40S ribosomal protein S 36.1 7.5 0.00026 35.8 0.0 11 104-114 118-128 (295)
45 2w36_A Endonuclease V; hypoxan 35.8 43 0.0015 29.5 4.8 55 3-57 77-141 (225)
46 3fkj_A Putative phosphosugar i 35.6 81 0.0028 28.2 6.7 71 22-93 87-171 (347)
47 3e3m_A Transcriptional regulat 35.5 99 0.0034 26.3 7.0 35 23-57 125-159 (355)
48 3h5t_A Transcriptional regulat 34.9 39 0.0013 28.9 4.3 45 23-68 127-171 (366)
49 2bpl_A Glucosamine--fructose-6 34.4 54 0.0019 31.6 5.7 74 22-96 337-426 (608)
50 3l6u_A ABC-type sugar transpor 34.2 52 0.0018 26.7 4.7 45 23-68 63-110 (293)
51 1tzb_A Glucose-6-phosphate iso 34.0 1.4E+02 0.0048 25.8 7.8 44 23-67 78-125 (302)
52 2r7a_A Bacterial heme binding 33.7 39 0.0013 27.7 4.0 31 23-53 58-88 (256)
53 3d8u_A PURR transcriptional re 32.9 40 0.0014 27.1 3.8 43 23-66 58-100 (275)
54 2e5f_A Hypothetical protein PH 32.5 1.6E+02 0.0054 25.8 7.9 46 24-69 79-126 (325)
55 3rot_A ABC sugar transporter, 32.3 43 0.0015 27.6 4.0 36 23-59 60-97 (297)
56 2rgy_A Transcriptional regulat 32.2 1.1E+02 0.0038 24.9 6.5 44 23-67 66-109 (290)
57 3qk7_A Transcriptional regulat 31.8 1.3E+02 0.0046 24.6 7.0 44 23-67 64-107 (294)
58 3jy6_A Transcriptional regulat 30.5 53 0.0018 26.6 4.2 43 23-67 62-104 (276)
59 3hcw_A Maltose operon transcri 29.6 1.4E+02 0.0047 24.5 6.7 36 23-59 67-102 (295)
60 4hwg_A UDP-N-acetylglucosamine 29.5 46 0.0016 30.0 4.0 33 23-56 93-125 (385)
61 2r79_A Periplasmic binding pro 29.3 46 0.0016 28.0 3.7 31 23-53 58-88 (283)
62 3huu_A Transcription regulator 29.1 1.4E+02 0.0049 24.5 6.7 44 23-67 82-125 (305)
63 3bbl_A Regulatory protein of L 28.9 1.7E+02 0.006 23.7 7.1 34 23-57 63-96 (287)
64 3egc_A Putative ribose operon 28.7 1.2E+02 0.004 24.6 6.0 44 23-67 63-106 (291)
65 1n2z_A Vitamin B12 transport p 28.6 42 0.0015 27.4 3.3 31 23-53 56-86 (245)
66 3brq_A HTH-type transcriptiona 28.5 65 0.0022 25.9 4.4 43 23-66 76-119 (296)
67 1gpw_B Amidotransferase HISH; 28.3 49 0.0017 26.5 3.7 33 23-55 41-85 (201)
68 3cs3_A Sugar-binding transcrip 28.2 97 0.0033 25.0 5.4 34 24-58 57-90 (277)
69 3o74_A Fructose transport syst 28.1 65 0.0022 25.6 4.3 44 23-67 57-101 (272)
70 3ksm_A ABC-type sugar transpor 27.0 1.9E+02 0.0066 22.8 6.9 34 25-59 60-95 (276)
71 3fij_A LIN1909 protein; 11172J 26.8 34 0.0012 29.2 2.5 37 18-54 55-115 (254)
72 3brs_A Periplasmic binding pro 26.5 2E+02 0.0068 23.1 7.0 35 23-58 64-100 (289)
73 2h3h_A Sugar ABC transporter, 26.5 73 0.0025 26.4 4.4 44 23-67 56-102 (313)
74 3m9w_A D-xylose-binding peripl 26.0 2.4E+02 0.0082 23.1 7.5 40 23-63 57-98 (313)
75 3h5o_A Transcriptional regulat 25.7 2.4E+02 0.0081 23.7 7.6 33 23-55 117-149 (339)
76 3psh_A Protein HI_1472; substr 25.2 69 0.0024 27.3 4.2 32 23-55 83-114 (326)
77 3c3k_A Alanine racemase; struc 24.9 1.4E+02 0.0049 24.2 5.9 34 23-58 63-96 (285)
78 3gbv_A Putative LACI-family tr 24.6 55 0.0019 26.5 3.3 46 22-68 67-115 (304)
79 3o1i_D Periplasmic protein TOR 23.4 36 0.0012 27.7 1.9 30 23-53 62-93 (304)
80 3clk_A Transcription regulator 23.3 61 0.0021 26.4 3.4 35 23-58 64-98 (290)
81 2fn9_A Ribose ABC transporter, 23.2 89 0.003 25.3 4.3 32 23-54 57-90 (290)
82 3g1w_A Sugar ABC transporter; 22.7 71 0.0024 26.1 3.7 44 23-67 60-106 (305)
83 2o20_A Catabolite control prot 22.3 82 0.0028 26.5 4.0 35 23-58 118-152 (332)
84 1ka9_H Imidazole glycerol phos 21.8 75 0.0026 25.6 3.6 34 22-55 38-83 (200)
85 3g85_A Transcriptional regulat 21.8 53 0.0018 26.6 2.7 42 23-67 67-108 (289)
86 3k9c_A Transcriptional regulat 21.4 1.8E+02 0.0061 23.7 5.8 43 23-67 65-107 (289)
87 3kke_A LACI family transcripti 21.4 2.5E+02 0.0085 23.0 6.8 43 23-68 70-113 (303)
88 1uf3_A Hypothetical protein TT 21.1 1.4E+02 0.0047 23.2 4.9 38 24-75 32-77 (228)
89 2hsg_A Glucose-resistance amyl 20.1 73 0.0025 26.7 3.2 35 23-58 115-149 (332)
No 1
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=2.7e-51 Score=369.23 Aligned_cols=121 Identities=52% Similarity=0.947 Sum_probs=107.9
Q ss_pred cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845 4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81 (261)
Q Consensus 4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~ 81 (261)
-.||+|||+| |||+++..|++|++|||+||+.|||||+||+|+||||||||||||+|++|||+|||||||.+||+|||
T Consensus 95 ~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndds~~SI~Li~ 174 (252)
T 3u5c_A 95 ATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIW 174 (252)
T ss_dssp CEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTTSTTHHHHHH
T ss_pred CceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCCCcchHHHHH
Confidence 3589999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC-CCCCCcccccccccccCchhhhhhhHhhh
Q psy9845 82 WLLAREVLRFRGTI-PREPKWDVVVDLFFYRDPEEAEKEEQAGK 124 (261)
Q Consensus 82 wlLAreVLr~rGtI-s~e~pWEVmPDLyFYRDPEEiEKEeqaaa 124 (261)
|+|+++||++||+| ||+|||+|||||||||||||+|||+++++
T Consensus 175 ~~La~aVl~~rg~i~s~~~~w~v~~dl~fyrdpee~e~~~~~~~ 218 (252)
T 3u5c_A 175 YLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEA 218 (252)
T ss_dssp HHHHHHHHSSSSSCCSSSCCCSSCGGGSSCCCC-----------
T ss_pred HHHHHHHHHhcCCcCcCCCCCccCceeeeecCHHHHhhHHHhhh
Confidence 99999999999999 69999999999999999999999887544
No 2
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=3.3e-51 Score=366.15 Aligned_cols=146 Identities=38% Similarity=0.730 Sum_probs=109.1
Q ss_pred cccc-cccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHH
Q psy9845 4 LSSR-TGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80 (261)
Q Consensus 4 ~~~i-~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi 80 (261)
-.|| +|||+| |||+++.+|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||
T Consensus 91 ~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Ndds~~SI~Li 170 (241)
T 2xzm_B 91 CKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMI 170 (241)
T ss_dssp CBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCCSSHHHHHHH
T ss_pred CEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCCcccchHHHH
Confidence 3578 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhhhhhhhcCCccccccCCCCCCCCCC
Q psy9845 81 WWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDT 150 (261)
Q Consensus 81 ~wlLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~~~~~~~~~e~~~~~~~~~w~~~ 150 (261)
+|+|+++||++||+++|+|+|+|||||||||||||+|||||+++++++++++.. .|+++.+++.+|++.
T Consensus 171 ~~~la~ail~~rg~i~~~~~~~v~~dlf~~rdpee~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 239 (241)
T 2xzm_B 171 YWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKV-AEVKEGEAEQNTDNK 239 (241)
T ss_dssp HHHHHHHHHHHHTSSCSSSCCCSCTTTTSCCCCC------------------------------------
T ss_pred HHHHHHHHHHhhCccCCCCCCCcCcceeeecCHHHhhhhhhhhhcccccchhcc-cccCCCCCCCccccc
Confidence 999999999999999999999999999999999999999999999998876543 367778888899764
No 3
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-50 Score=372.90 Aligned_cols=120 Identities=58% Similarity=0.985 Sum_probs=117.5
Q ss_pred ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845 5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82 (261)
Q Consensus 5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w 82 (261)
.||+|||+| |||+++..|++|++|||+||+.|||+|+||+|+||||||||||||+|++|||+|||||||.+||+||||
T Consensus 101 ~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~VDy~IP~NDds~rSI~Li~~ 180 (305)
T 3iz6_A 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180 (305)
T ss_dssp EEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCCSSTHHHHHHHH
T ss_pred ccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccccceEEeCCCCCccHHHHHHH
Confidence 589999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhh
Q psy9845 83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGK 124 (261)
Q Consensus 83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaa 124 (261)
+|+++||++||+|||+|||||||||||||||||+|||||+.+
T Consensus 181 lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~ 222 (305)
T 3iz6_A 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEA 222 (305)
T ss_dssp HHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhc
Confidence 999999999999999999999999999999999999998754
No 4
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.6e-50 Score=370.86 Aligned_cols=128 Identities=68% Similarity=1.135 Sum_probs=106.3
Q ss_pred cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845 4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81 (261)
Q Consensus 4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~ 81 (261)
..||+|||+| |||+++..|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||+
T Consensus 96 ~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~ 175 (295)
T 2zkq_b 96 ATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW 175 (295)
T ss_dssp CEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHH
T ss_pred CceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCCCCccchHHHHH
Confidence 3589999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhhhhhhh
Q psy9845 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA 131 (261)
Q Consensus 82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~a~~~~ 131 (261)
|+|+++||++||+|+|+|||+|||||||||||||+||+||++++++++++
T Consensus 176 ~lla~aIl~~rg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~~~~~~ 225 (295)
T 2zkq_b 176 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKE 225 (295)
T ss_dssp HHHHHHHHHCCSSSSCCCCCCCCHHHHCCC--------------------
T ss_pred HHHHHHHHHhcCcccCCCCCcccchheeecCHHHhhhhhhhhhhhhcchh
Confidence 99999999999999999999999999999999999999999888876544
No 5
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=352.48 Aligned_cols=122 Identities=70% Similarity=1.191 Sum_probs=105.9
Q ss_pred ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845 5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82 (261)
Q Consensus 5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w 82 (261)
.||+|||+| |||+++..|++|++|||+||+.|||||+||+++||||||||||||||++|||+|||||||.+||+||+|
T Consensus 130 ~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~ 209 (253)
T 3bch_A 130 TPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWW 209 (253)
T ss_dssp EEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHH
T ss_pred eeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCcccCceEeecCCcchhhHHHHHH
Confidence 589999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCcccccccccccCchhhhhhhHhhhhh
Q psy9845 83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKES 126 (261)
Q Consensus 83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEEiEKEeqaaae~ 126 (261)
+|+++||++||+|++++||+|||||||||||||+|||||++++|
T Consensus 210 lla~aIl~grg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~ 253 (253)
T 3bch_A 210 MLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253 (253)
T ss_dssp HHHHHHHHHHTSSCSSSCCSSCGGGGCCC---------------
T ss_pred HHHHHHHHhcCccCCCCCCccCceeeeecCHHHHhhhhhhhhcC
Confidence 99999999999999999999999999999999999999987764
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.9e-39 Score=281.23 Aligned_cols=108 Identities=38% Similarity=0.666 Sum_probs=104.3
Q ss_pred cccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHH
Q psy9845 4 LSSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81 (261)
Q Consensus 4 ~~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~ 81 (261)
-.|++|||+| |||+++..|++|++|||+||+.|||||+||+++||||||||||||||++|||+|||||||.+||+|||
T Consensus 89 ~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~Li~ 168 (202)
T 3j20_B 89 ARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIY 168 (202)
T ss_dssp CCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHHHHH
T ss_pred CceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHHHHH
Confidence 3589999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCccccccccccc
Q psy9845 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYR 111 (261)
Q Consensus 82 wlLAreVLr~rGtIs~e~pWEVmPDLyFYR 111 (261)
|+|+++||++||+||++.+|++++|.|.-+
T Consensus 169 ~~la~avl~~rg~i~~~~~~~~~~~~f~~~ 198 (202)
T 3j20_B 169 WILAREILYNRGEIQSREDFKIPVEEFEMK 198 (202)
T ss_dssp HHHHHHHHHHHTSSCSSSCCSSCTTTTSCC
T ss_pred HHHHHHHHHhcCCcCCcCCCCCCHHHHhhh
Confidence 999999999999999999999999998643
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=8.9e-39 Score=280.78 Aligned_cols=106 Identities=33% Similarity=0.569 Sum_probs=101.2
Q ss_pred ccccccccc--CchhhhcccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHH
Q psy9845 5 SSRTGLFIF--PNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82 (261)
Q Consensus 5 ~~i~Grfip--lTNQIQaaFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~w 82 (261)
.|++|||+| |||++++.|++|++|||+||+.|||||+||+++||||||||||||+|++|||+|||||||.+||+||+|
T Consensus 94 ~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~Li~~ 173 (208)
T 1vi6_A 94 DYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYW 173 (208)
T ss_dssp EEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHH
T ss_pred eeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHHHHHH
Confidence 589999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCcccccccccccCchh
Q psy9845 83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEE 115 (261)
Q Consensus 83 lLAreVLr~rGtIs~e~pWEVmPDLyFYRDPEE 115 (261)
+|+++|+++||+++ +||||+||||.++.
T Consensus 174 ~la~ail~grg~~~-----~~~~d~f~~~~~~~ 201 (208)
T 1vi6_A 174 LLAREIAKIRGQDF-----TYSIEDFEAELEGG 201 (208)
T ss_dssp HHHHHHHHHHTCCC-----CCCHHHHSCCC---
T ss_pred HHHHHHHHHhCCCC-----CcChhheeeecCCC
Confidence 99999999999997 89999999999873
No 8
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=99.96 E-value=1.2e-29 Score=228.64 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=74.0
Q ss_pred ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q psy9845 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPK 100 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGtIs~e~p 100 (261)
|.++|++|||+||+.||+||+||+++||||||||||||||++|||+|||||||.+||+||+|+|+++|+++++. +.++
T Consensus 155 m~~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~ 232 (256)
T 2vqe_B 155 LKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEP 232 (256)
T ss_dssp CSSCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCS
T ss_pred cccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhcc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999998874 4555
Q ss_pred c
Q psy9845 101 W 101 (261)
Q Consensus 101 W 101 (261)
|
T Consensus 233 ~ 233 (256)
T 2vqe_B 233 S 233 (256)
T ss_dssp C
T ss_pred c
Confidence 5
No 9
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=99.96 E-value=2.5e-30 Score=227.94 Aligned_cols=70 Identities=33% Similarity=0.386 Sum_probs=68.6
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhh
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFR 92 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~r 92 (261)
++|++|||+||+.||+||+||+++||||||||||||||++|||+|||||||.+||+||+|+|+++|++++
T Consensus 148 ~~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 148 GLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp SCCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred cCCCeEEecCcccccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999875
No 10
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.95 E-value=1.9e-28 Score=217.77 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=70.8
Q ss_pred ccCCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy9845 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGT 94 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~SVgLi~wlLAreVLr~rGt 94 (261)
|.++|++|||+||+.||+||+||+++||||||||||||||++|||||||||||.+||+||+++|+.+|+++++.
T Consensus 154 m~~~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 154 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp CCSCCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred cccCCCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998863
No 11
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=86.98 E-value=2.9 Score=33.14 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=48.5
Q ss_pred ccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecC-CCCC-Ccceeec--cCCCCC-----------cc-----h
Q psy9845 21 AFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNT-ESPL-RFVDIAI--PCNNKS-----------PH-----S 76 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDT-DSpL-~~VDiaI--PcNNds-----------~~-----S 76 (261)
...+-+++|++....... ++++|...|.+||+|++. +|++ .+.|+.| |++... .. +
T Consensus 76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~ 155 (186)
T 1m3s_A 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQT 155 (186)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHH
Confidence 345668888877655543 668889999999999986 4554 3345444 544332 11 2
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy9845 77 IGLMWWLLAREVLRFRGT 94 (261)
Q Consensus 77 VgLi~wlLAreVLr~rGt 94 (261)
.-+++.+|...+...+|.
T Consensus 156 ~~~~~d~L~~~~~~~~~~ 173 (186)
T 1m3s_A 156 LLLFYDAVILKLMEKKGL 173 (186)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 356678888888776664
No 12
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=79.56 E-value=5.5 Score=31.77 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=41.9
Q ss_pred cccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecCC-CCCCc----ceeec--cCCCCCcc--hHHHHHHHHHH
Q psy9845 20 AAFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNTE-SPLRF----VDIAI--PCNNKSPH--SIGLMWWLLAR 86 (261)
Q Consensus 20 aaFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDTD-SpL~~----VDiaI--PcNNds~~--SVgLi~wlLAr 86 (261)
....+-+++|++....... +++.|...|++||+|++.. +++.- .|+.| |++..+.- +.-+++.+|..
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~~~l~~~~~L~~ 184 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCD 184 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHHHHHHHHHHHHH
Confidence 4456778888887655543 6678899999999999974 44322 45554 44433322 22333444544
Q ss_pred HHH
Q psy9845 87 EVL 89 (261)
Q Consensus 87 eVL 89 (261)
.|.
T Consensus 185 ~~~ 187 (196)
T 2yva_A 185 LID 187 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 13
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=75.11 E-value=9.3 Score=31.12 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=33.1
Q ss_pred ccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecCC-CCC-CcceeeccC
Q psy9845 21 AFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNTE-SPL-RFVDIAIPC 69 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDTD-SpL-~~VDiaIPc 69 (261)
...+-+++|++.-..... +++.|...|++||+|++.. |++ .+.|+.|.+
T Consensus 86 ~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 86 RITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 445668888877555533 5578888999999999854 554 345655543
No 14
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=74.29 E-value=8.2 Score=35.19 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=50.4
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCCCC---------CcchHHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCNNK---------SPHSIGLMWWLLAR 86 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcNNd---------s~~SVgLi~wlLAr 86 (261)
+.+.+++|++....+. .+++.|...|.+||+|++. +|++ +..|+.|+.+.. +..+--+++.+|+-
T Consensus 95 ~~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks~tsql~~l~lLa~ 174 (366)
T 3knz_A 95 RSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLAL 174 (366)
T ss_dssp HSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCCCC------CTHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCCCccccccccHHHHHHHHHHHHHHH
Confidence 3667777777655553 4678889999999999974 6666 456777765421 11222245667777
Q ss_pred HHHHhhCCCC
Q psy9845 87 EVLRFRGTIP 96 (261)
Q Consensus 87 eVLr~rGtIs 96 (261)
.+...+|.++
T Consensus 175 ~l~~~~g~~~ 184 (366)
T 3knz_A 175 AVAGQQQRLD 184 (366)
T ss_dssp HHHHHTTCSC
T ss_pred HHHHHhCCCC
Confidence 7777788765
No 15
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=73.74 E-value=12 Score=29.73 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.7
Q ss_pred cccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecC-CCCC-CcceeeccCC
Q psy9845 20 AAFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCN 70 (261)
Q Consensus 20 aaFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcN 70 (261)
....+-+++|++....+.. +++.|...|.+||+|++. ++++ .+.|+.|...
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~ 168 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVP 168 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeC
Confidence 3356778888887655533 567888999999999985 4554 3455555443
No 16
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=73.47 E-value=10 Score=31.02 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=35.8
Q ss_pred cccCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecCC-CCC-CcceeeccCC
Q psy9845 20 AAFREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNTE-SPL-RFVDIAIPCN 70 (261)
Q Consensus 20 aaFrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDTD-SpL-~~VDiaIPcN 70 (261)
....+-+++|++....+. .++++|...|.+||+|++.. +++ .+.|+.|...
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~ 183 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVP 183 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEEC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcC
Confidence 346677888888765553 36688899999999999864 554 3456665444
No 17
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=73.01 E-value=14 Score=29.01 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=32.6
Q ss_pred cCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecCC-CCC-CcceeeccC
Q psy9845 22 FREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNTE-SPL-RFVDIAIPC 69 (261)
Q Consensus 22 FrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDTD-SpL-~~VDiaIPc 69 (261)
..+-+++|++.-..... +++.|...|.++|+|++.. +++ .+.|+.|..
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEe
Confidence 45568888877655543 5577888999999999854 554 345655543
No 18
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=70.86 E-value=8.9 Score=34.55 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=49.5
Q ss_pred CCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCCC-cceeeccCCC---------CCcchHHHHHHHHHHHH
Q psy9845 24 EPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPLR-FVDIAIPCNN---------KSPHSIGLMWWLLAREV 88 (261)
Q Consensus 24 EPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL~-~VDiaIPcNN---------ds~~SVgLi~wlLAreV 88 (261)
+.+++|++....+. .+++.|...|.+||+|++. +|++. ..|+.|..+. ++..+--+++.+|+-.+
T Consensus 82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l 161 (352)
T 3g68_A 82 ENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQI 161 (352)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHH
Confidence 56777777655553 4778889999999999974 66664 4677776542 22222234566788888
Q ss_pred HHhhCCCC
Q psy9845 89 LRFRGTIP 96 (261)
Q Consensus 89 Lr~rGtIs 96 (261)
...+|.++
T Consensus 162 ~~~~g~~~ 169 (352)
T 3g68_A 162 AREKGIIS 169 (352)
T ss_dssp HHHTTSSC
T ss_pred HHHcCCCC
Confidence 88888775
No 19
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=67.99 E-value=11 Score=33.67 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=46.9
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecCC-CCC-Ccceeec--cCCCCCcchHHHHHHHHHHHHHHhhC
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNTE-SPL-RFVDIAI--PCNNKSPHSIGLMWWLLAREVLRFRG 93 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDTD-SpL-~~VDiaI--PcNNds~~SVgLi~wlLAreVLr~rG 93 (261)
..+.+++|++....+. .+++.|...|.+||+|+|.. |++ +..|+.| |+..++ .+-.++..+|+-.++..+|
T Consensus 100 l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~~~~~ 178 (355)
T 2a3n_A 100 LNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVLSRNN 178 (355)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHHHHcC
Confidence 3577888888876663 36688899999999999854 544 3455555 444443 2334445566666777766
No 20
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=66.51 E-value=21 Score=27.87 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=44.0
Q ss_pred ccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecCCCCC-Ccceeec--cCCCCC---cch-----HHHHHHHHH
Q psy9845 21 AFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNTESPL-RFVDIAI--PCNNKS---PHS-----IGLMWWLLA 85 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDTDSpL-~~VDiaI--PcNNds---~~S-----VgLi~wlLA 85 (261)
...+-+++|++....... +++.|...|.+||+|++....+ .+.|+.| |++.++ ..| .-+++.+|.
T Consensus 79 ~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~ 158 (180)
T 1jeo_A 79 SYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVI 158 (180)
T ss_dssp CCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHH
Confidence 345567777766554433 5678889999999999864323 3355544 443221 222 346677777
Q ss_pred HHHHHhhC
Q psy9845 86 REVLRFRG 93 (261)
Q Consensus 86 reVLr~rG 93 (261)
..+...+|
T Consensus 159 ~~~~~~~~ 166 (180)
T 1jeo_A 159 AEIMKRLN 166 (180)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77766554
No 21
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=65.95 E-value=23 Score=31.98 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=48.8
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhc-CCCEEEEecC-CCCCC-cceeeccCC--CC-C------cchHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYV-NIPVIAFCNT-ESPLR-FVDIAIPCN--NK-S------PHSIGLMWWLLA 85 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~V-NIPtIALcDT-DSpL~-~VDiaIPcN--Nd-s------~~SVgLi~wlLA 85 (261)
..+.+++|++....+. .+++.|... |.+||+|+|. +|++. ..|+.|... .+ + ..+.-+.+.+|+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll~ 174 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTG 174 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCccccccccccHHHHHHHHHHHH
Confidence 5667888888876663 366788888 9999999995 45553 356655443 21 1 112334556677
Q ss_pred HHHHHhhCCCC
Q psy9845 86 REVLRFRGTIP 96 (261)
Q Consensus 86 reVLr~rGtIs 96 (261)
..+...+|.++
T Consensus 175 ~~l~~~~g~~~ 185 (373)
T 2aml_A 175 LHFAYKTVQID 185 (373)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhCCCC
Confidence 77777777665
No 22
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=65.26 E-value=24 Score=27.66 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=34.4
Q ss_pred ccCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCCC
Q psy9845 21 AFREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCNN 71 (261)
Q Consensus 21 aFrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcNN 71 (261)
...+-+++|++...... .+++.|...|++||+|++. ++++ .+.|+.|....
T Consensus 84 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 84 NLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAAT 140 (187)
T ss_dssp TCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecC
Confidence 34566788887765554 3557888999999999985 5554 34666555443
No 23
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=65.14 E-value=29 Score=28.80 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=46.7
Q ss_pred ccCCCCEEEEeCCCCCch----hHHHHhh--cCCCEEEEecC-CCCC-CcceeeccCCCCC------------cchHHHH
Q psy9845 21 AFREPRLLVVTDPHTDHQ----PITEAAY--VNIPVIAFCNT-ESPL-RFVDIAIPCNNKS------------PHSIGLM 80 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQ----ALtEAS~--VNIPtIALcDT-DSpL-~~VDiaIPcNNds------------~~SVgLi 80 (261)
...+=+++|++....+.. +++.|.. .|.+||+|++. +|++ .+.|+.|...... .-+.-++
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~l 182 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVI 182 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHH
Confidence 445668888887655543 5578888 99999999976 5544 3456655543211 1134555
Q ss_pred HHHHHHHHHHhhC
Q psy9845 81 WWLLAREVLRFRG 93 (261)
Q Consensus 81 ~wlLAreVLr~rG 93 (261)
+.+|.-.+...+|
T Consensus 183 ld~L~~~l~~~~g 195 (220)
T 3etn_A 183 GDILVVQTMKRTE 195 (220)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6777777777666
No 24
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=63.46 E-value=28 Score=27.89 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=44.0
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-Ccceeec--cCCCC----------CcchHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAI--PCNNK----------SPHSIGLMWWL 83 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaI--PcNNd----------s~~SVgLi~wl 83 (261)
..+-+++|++...... .+++.|...|.+||+|++. +|++ .+.|+.| |+... +.-+.-+++.+
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~ 169 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDA 169 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHH
Confidence 4556888887765554 3557888999999999985 4444 3455555 44322 11223344566
Q ss_pred HHHHHHHhhC
Q psy9845 84 LAREVLRFRG 93 (261)
Q Consensus 84 LAreVLr~rG 93 (261)
|...+...+|
T Consensus 170 L~~~l~~~~g 179 (201)
T 3fxa_A 170 VIVCLMTYMN 179 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 6666665554
No 25
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=59.96 E-value=30 Score=28.40 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=37.8
Q ss_pred hhcccCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCCC-cc---eeeccCCCCCc
Q psy9845 18 FQAAFREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPLR-FV---DIAIPCNNKSP 74 (261)
Q Consensus 18 IQaaFrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL~-~V---DiaIPcNNds~ 74 (261)
+....++-|++|++....+. .+++.|...|++||+|++. ++++. +. |+.|....+..
T Consensus 108 l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~ 173 (201)
T 3trj_A 108 VAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNI 173 (201)
T ss_dssp HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCH
T ss_pred HHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCc
Confidence 33445777888888765553 3667889999999999975 55553 34 65555544433
No 26
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=59.45 E-value=18 Score=31.89 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=54.3
Q ss_pred ccCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecCC-CCC-CcceeeccCCC--C---------CcchHHHHHHH
Q psy9845 21 AFREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNTE-SPL-RFVDIAIPCNN--K---------SPHSIGLMWWL 83 (261)
Q Consensus 21 aFrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDTD-SpL-~~VDiaIPcNN--d---------s~~SVgLi~wl 83 (261)
.+.+-|++|++.-.... .+++.|...|.+||+|++.. |++ .+.|+.|.... . +..+..+++.+
T Consensus 137 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~ta~~~vl~~ 216 (306)
T 1nri_A 137 HFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGTAQKMVLNM 216 (306)
T ss_dssp TCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHHHHHHHHHH
Confidence 35667888887755543 36678899999999998864 443 34677665542 1 11234477889
Q ss_pred HHHHHHHhhCCCCCCCCccccccc
Q psy9845 84 LAREVLRFRGTIPREPKWDVVVDL 107 (261)
Q Consensus 84 LAreVLr~rGtIs~e~pWEVmPDL 107 (261)
|...+....|..-. +.|.|+
T Consensus 217 L~~~~~~~~g~~~~----~~m~~~ 236 (306)
T 1nri_A 217 LTTASMILLGKCYE----NLMVDV 236 (306)
T ss_dssp HHHHHHHHTTSCBT----TBCTTC
T ss_pred HHHHHHHHccHHHH----HHHhhh
Confidence 98888887775432 345565
No 27
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=58.22 E-value=19 Score=32.42 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=42.6
Q ss_pred Ccccccccccc-----CchhhhcccCCCCEEEEeCCCCCc-----hhHHHHhhcCCCEEEEecCCCCCCcceeeccCCCC
Q psy9845 3 SLSSRTGLFIF-----PNLQFQAAFREPRLLVVTDPHTDH-----QPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72 (261)
Q Consensus 3 ~~~~i~Grfip-----lTNQIQaaFrEPrLLVVTDPraDh-----QALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNd 72 (261)
.+-||-|-|-| +..-++....+|++|+|=....-| .|-.=--.+|+|||++--+----+..++.-|.+..
T Consensus 83 ~~PYIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~~~g~~~~~~~~~~ 162 (246)
T 3ga2_A 83 SVPYVSGFLAFRELPLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIKGCDFVTPEIEV 162 (246)
T ss_dssp CCCSSSSCGGGGTHHHHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESSCCCCTTCCCCCCCSST
T ss_pred CCCCCCCchhhhhHHHHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeeeccccccCCccccCccccC
Confidence 45677777766 444445555789999985443333 33333345789999997663221123455666655
Q ss_pred Cc
Q psy9845 73 SP 74 (261)
Q Consensus 73 s~ 74 (261)
|.
T Consensus 163 g~ 164 (246)
T 3ga2_A 163 GA 164 (246)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 28
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=54.74 E-value=17 Score=32.50 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=44.9
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcC-CCEEEEecC-CCCC-CcceeeccCC--CC-------CcchHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVN-IPVIAFCNT-ESPL-RFVDIAIPCN--NK-------SPHSIGLMWWLLA 85 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VN-IPtIALcDT-DSpL-~~VDiaIPcN--Nd-------s~~SVgLi~wlLA 85 (261)
..+.+++|++....+. .+++.|...| .++|+|+|. +|++ +..|+.|+.. .+ +..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 4566788777765553 3667888899 999999886 4544 3356555443 21 2223344556666
Q ss_pred HHHHHhhC
Q psy9845 86 REVLRFRG 93 (261)
Q Consensus 86 reVLr~rG 93 (261)
-.+...+|
T Consensus 177 ~~l~~~~~ 184 (368)
T 1moq_A 177 AKLSRLKG 184 (368)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66666666
No 29
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=53.27 E-value=30 Score=30.90 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=42.6
Q ss_pred Ccccccccccc-----CchhhhcccCCCCEEEEeCCCCCch-----hHHHHhhcCCCEEEEecCCCCCCcceeeccCCCC
Q psy9845 3 SLSSRTGLFIF-----PNLQFQAAFREPRLLVVTDPHTDHQ-----PITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72 (261)
Q Consensus 3 ~~~~i~Grfip-----lTNQIQaaFrEPrLLVVTDPraDhQ-----ALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNd 72 (261)
.+-||-|-|-| +..-+++....|++|+|=....-|. |-.=--.+|+|||++--+- -+.++.-|++.+
T Consensus 81 ~~PYIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~---L~g~~~~~~~~~ 157 (237)
T 3goc_A 81 SFPYVPGLLAFREIPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNP---FTFSYEDPGAPR 157 (237)
T ss_dssp CSCCCTTCGGGGTHHHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESSC---TTCEECCCCSST
T ss_pred cCCCCcchhhhhhHHHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeeeccc---cccccccccccC
Confidence 45677777766 3344455557899999865444443 3222345789999997652 234565566655
Q ss_pred Cc
Q psy9845 73 SP 74 (261)
Q Consensus 73 s~ 74 (261)
|.
T Consensus 158 G~ 159 (237)
T 3goc_A 158 GS 159 (237)
T ss_dssp TC
T ss_pred Cc
Confidence 54
No 30
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=52.52 E-value=32 Score=27.42 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=37.1
Q ss_pred cccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecCC-CCC-Cc---ceeeccCCCCC
Q psy9845 20 AAFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNTE-SPL-RF---VDIAIPCNNKS 73 (261)
Q Consensus 20 aaFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDTD-SpL-~~---VDiaIPcNNds 73 (261)
....+-|++|++....... +++.|...|++||+|++.. +++ .+ .|+.|......
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 3456778888887655533 6678899999999999864 444 23 57776655433
No 31
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=51.24 E-value=14 Score=33.59 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=47.6
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcC-CCEEEEecC-CCCCC-cceeeccCC---CCCc------chHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVN-IPVIAFCNT-ESPLR-FVDIAIPCN---NKSP------HSIGLMWWLLA 85 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VN-IPtIALcDT-DSpL~-~VDiaIPcN---Nds~------~SVgLi~wlLA 85 (261)
..+.+++|++....+. .+++.|...| .+||+|++. +|++. ..|+.|..+ ..+. .+.-+++.+|+
T Consensus 99 ~~~~dlvI~iS~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E~~~a~Tks~t~ql~~l~lL~ 178 (372)
T 3tbf_A 99 VVDGSLFVSISQSGETADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFT 178 (372)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCCCCBSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCccccchhhHHHHHHHHHHHHHH
Confidence 4566777777665553 4678888899 999999965 55553 355555443 2222 22344456777
Q ss_pred HHHHHhhCCCC
Q psy9845 86 REVLRFRGTIP 96 (261)
Q Consensus 86 reVLr~rGtIs 96 (261)
-.+...+|.++
T Consensus 179 ~~l~~~~g~~~ 189 (372)
T 3tbf_A 179 LVIAKLKNSLT 189 (372)
T ss_dssp HHHHHHTTCSC
T ss_pred HHHHHHcCCCC
Confidence 77777778765
No 32
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=50.79 E-value=12 Score=33.92 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCC
Q psy9845 23 REPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCN 70 (261)
Q Consensus 23 rEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcN 70 (261)
.+-+++|++....+. .+++.|...|.+||+|+|. +|++ +..|+.|...
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 159 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHIN 159 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeec
Confidence 344677776655443 3678889999999999986 4554 3356665443
No 33
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.20 E-value=22 Score=29.22 Aligned_cols=44 Identities=5% Similarity=-0.013 Sum_probs=31.9
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+..+...|||+|.+ |++.+-..+++..
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 108 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTH-GRSDMGIEHAFHD 108 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEE-SCCCSSCCCEEEE
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEEE-CCcCCCCCCcEEE
Confidence 6789999988776777888888899999865 5554433445544
No 34
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=49.20 E-value=16 Score=32.89 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCC
Q psy9845 23 REPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCN 70 (261)
Q Consensus 23 rEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcN 70 (261)
.+-+++|++....+. .+++.|...|.+||+|+|. +|++ +..|+.|...
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 149 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHIN 149 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcC
Confidence 344577776655543 3678889999999999986 4554 3356666543
No 35
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=48.62 E-value=44 Score=26.05 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=34.3
Q ss_pred ccCCCCEEEEeCCCCCch----hHHHHhhcCCCEEEEecC-CCCC-CcceeeccCC
Q psy9845 21 AFREPRLLVVTDPHTDHQ----PITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCN 70 (261)
Q Consensus 21 aFrEPrLLVVTDPraDhQ----ALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcN 70 (261)
...+-+++|++....+.. +++.|...|.+||+|++. ++++ .+.|+.|...
T Consensus 107 ~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 356678888877655543 557888999999999985 4554 3356655444
No 36
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.17 E-value=65 Score=26.05 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCC-cceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR-FVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~-~VDiaI 67 (261)
+..+.||+.....+...+..+...|||+|.+ |++.+.. .+++..
T Consensus 68 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V~ 112 (292)
T 3k4h_A 68 RQIGGIILLYSRENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYVD 112 (292)
T ss_dssp TCCCEEEESCCBTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEE
Confidence 5789999988777777888888999999876 5544322 244443
No 37
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.89 E-value=76 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESP 59 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSp 59 (261)
+..+.||+.....+...+..+...|||+|.+-|.+..
T Consensus 123 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~ 159 (344)
T 3kjx_A 123 WRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGK 159 (344)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 5688999987766667777888899999999665443
No 38
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=40.39 E-value=57 Score=28.84 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=44.1
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCCC---CCcchHHH-HHHHHHHHHHHh
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCNN---KSPHSIGL-MWWLLAREVLRF 91 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcNN---ds~~SVgL-i~wlLAreVLr~ 91 (261)
+.+.+++|++....+. .+++.|...|.+||+|+|. +|++ +..|+.|+.+. .+..+-.+ ++.+|+-.+++.
T Consensus 72 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~ 151 (329)
T 3eua_A 72 LGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQV 151 (329)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4466788877665553 4678889999999999975 5555 34677765442 22222222 334455555555
Q ss_pred hC
Q psy9845 92 RG 93 (261)
Q Consensus 92 rG 93 (261)
+|
T Consensus 152 ~~ 153 (329)
T 3eua_A 152 LE 153 (329)
T ss_dssp HH
T ss_pred hc
Confidence 55
No 39
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=39.67 E-value=28 Score=29.29 Aligned_cols=35 Identities=9% Similarity=0.291 Sum_probs=25.0
Q ss_pred CCCCEEEEeCCCCC--chhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraD--hQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+ ...+.++...|||+|.+ |+..
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~-d~~~ 95 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDT 95 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCC
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe-cCCC
Confidence 56888887654333 45678888899999987 5543
No 40
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=39.07 E-value=32 Score=30.60 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=30.9
Q ss_pred CCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCCC-cceeeccC
Q psy9845 25 PRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPLR-FVDIAIPC 69 (261)
Q Consensus 25 PrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL~-~VDiaIPc 69 (261)
|+++|++....+. .+++.|...|+++|+|+|. +|++. ..|+.|..
T Consensus 101 ~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 101 RGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp SEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEc
Confidence 4788888766653 3668888999999999986 45442 34544433
No 41
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=37.98 E-value=44 Score=27.89 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=30.3
Q ss_pred ccCCCCEEEEeCC-CCCchhH---HHHhhcCCCEEEEec---CCCC-CCcceee
Q psy9845 21 AFREPRLLVVTDP-HTDHQPI---TEAAYVNIPVIAFCN---TESP-LRFVDIA 66 (261)
Q Consensus 21 aFrEPrLLVVTDP-raDhQAL---tEAS~VNIPtIALcD---TDSp-L~~VDia 66 (261)
.+++-|.++|..+ ..|..++ .++..-|+++|+|++ +++. .++.|++
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~a 127 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLA 127 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHH
Confidence 4556666666554 4444344 788899999999999 3332 3566766
No 42
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=36.64 E-value=33 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEE
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAF 53 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIAL 53 (261)
-.|||||..+-......+..-+..||||+.+
T Consensus 58 l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 58 MKPTMLLVSELAQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp TCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEcCCcCchhHHHHHHHcCCcEEEe
Confidence 4799999887543334566667889999977
No 43
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.27 E-value=1e+02 Score=25.21 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=26.0
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+...+.++...|||+|.+ |+..
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 105 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVE 105 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-cccc
Confidence 5688888876555556777888889999977 5443
No 44
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.15 E-value=7.5 Score=35.78 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=9.0
Q ss_pred ccccccccCch
Q psy9845 104 VVDLFFYRDPE 114 (261)
Q Consensus 104 mPDLyFYRDPE 114 (261)
.||+.|--||.
T Consensus 118 ~PdlliV~Dp~ 128 (295)
T 2zkq_b 118 EPRLLVVTDPR 128 (295)
T ss_dssp CCSEEEESCTT
T ss_pred CCCeEEEeCCC
Confidence 58999888884
No 45
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=35.83 E-value=43 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=33.9
Q ss_pred Ccccccccccc-----CchhhhcccCCCCEEEEeCCCCCc-----hhHHHHhhcCCCEEEEecCC
Q psy9845 3 SLSSRTGLFIF-----PNLQFQAAFREPRLLVVTDPHTDH-----QPITEAAYVNIPVIAFCNTE 57 (261)
Q Consensus 3 ~~~~i~Grfip-----lTNQIQaaFrEPrLLVVTDPraDh-----QALtEAS~VNIPtIALcDTD 57 (261)
.+-||-|-+-| +..-+++....|++|+|=....-| .|-.=--.+|+|||++--+-
T Consensus 77 ~~PYIPG~LaFRE~P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~~ 141 (225)
T 2w36_A 77 TFPYIPGLLAFREGPLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSR 141 (225)
T ss_dssp CSCCCTTCTHHHHHHHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESSC
T ss_pred cCCcccchHHHhhhHHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEecc
Confidence 45677776665 444445556689999985443333 23223445599999997553
No 46
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=35.62 E-value=81 Score=28.24 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=43.3
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecC-CCCC-CcceeeccCCC------CCc--chHHHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNT-ESPL-RFVDIAIPCNN------KSP--HSIGLMWWLLARE 87 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDT-DSpL-~~VDiaIPcNN------ds~--~SVgLi~wlLAre 87 (261)
+.+.+++|++....+. .+++.|...|.+||+|+|. +|++ +..|+.|+.+. .+. ++. ..+.+|+-.
T Consensus 87 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~g~~e~~~~t~~~-~~l~llal~ 165 (347)
T 3fkj_A 87 LGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKA-AYSLWLALE 165 (347)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCCCTTSCCCGGGBHH-HHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccCCCCCccchhHHHH-HHHHHHHHH
Confidence 4566788877665553 4678888899999999974 5555 34566654432 222 222 234455555
Q ss_pred HHHhhC
Q psy9845 88 VLRFRG 93 (261)
Q Consensus 88 VLr~rG 93 (261)
+.+.+|
T Consensus 166 l~~~~~ 171 (347)
T 3fkj_A 166 ILAQTE 171 (347)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 666665
No 47
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=35.50 E-value=99 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=27.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTE 57 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTD 57 (261)
+..+.||+.....+...+.++...|||+|.+-+..
T Consensus 125 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~ 159 (355)
T 3e3m_A 125 RRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKP 159 (355)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCcc
Confidence 56899999887766677888888999999885443
No 48
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=34.89 E-value=39 Score=28.90 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeecc
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIP 68 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaIP 68 (261)
+..+.||+.....+...+.++...|||+|.+ |...+...+++...
T Consensus 127 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~ 171 (366)
T 3h5t_A 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP 171 (366)
T ss_dssp CCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE
T ss_pred CCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe
Confidence 4678888887766677788888889999965 65544344555443
No 49
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=34.40 E-value=54 Score=31.59 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=46.2
Q ss_pred cCCCCEEEEeCCCCCc----hhHHHHhhcC-CCEEEEecC-CCCC-CcceeeccCCC---------CCcchHHHHHHHHH
Q psy9845 22 FREPRLLVVTDPHTDH----QPITEAAYVN-IPVIAFCNT-ESPL-RFVDIAIPCNN---------KSPHSIGLMWWLLA 85 (261)
Q Consensus 22 FrEPrLLVVTDPraDh----QALtEAS~VN-IPtIALcDT-DSpL-~~VDiaIPcNN---------ds~~SVgLi~wlLA 85 (261)
..+.+++|++...-+. .+++.|...| +++|+|++. +|++ +..|+.|.... ++..+.-+++.+|+
T Consensus 337 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~ 416 (608)
T 2bpl_A 337 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 416 (608)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCcCCHHHHHHHHHHHHcCCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHH
Confidence 4556777777655553 4678889999 999999886 4544 23555554432 12223445566777
Q ss_pred HHHHHhhCCCC
Q psy9845 86 REVLRFRGTIP 96 (261)
Q Consensus 86 reVLr~rGtIs 96 (261)
-.+...+| ++
T Consensus 417 ~~l~~~~~-~~ 426 (608)
T 2bpl_A 417 AKLSKLKG-LD 426 (608)
T ss_dssp HHHHHHTT-CC
T ss_pred HHHHHhcC-CC
Confidence 77766666 54
No 50
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.15 E-value=52 Score=26.66 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=30.6
Q ss_pred CCCCEEEEeCCCCCc--hhHHHHhhcCCCEEEEecCCCCC-Ccceeecc
Q psy9845 23 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAIP 68 (261)
Q Consensus 23 rEPrLLVVTDPraDh--QALtEAS~VNIPtIALcDTDSpL-~~VDiaIP 68 (261)
+.++.||+.....+. ..+.++...|||+|.+ |++.+. ..+++...
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~ 110 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITS 110 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEE
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEec
Confidence 568999987665554 6788888899999877 444433 34455443
No 51
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=33.95 E-value=1.4e+02 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCCEEEEeCCCCCc----hhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDH----QPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDh----QALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
.+.+++|++....+. .+++.|...|+++|+|+|.. ++.-.|+.+
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 566888888766654 36788899999999999987 664435555
No 52
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=33.72 E-value=39 Score=27.72 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=22.0
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEE
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAF 53 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIAL 53 (261)
-.|||||..+.......+..-+.++|||+.+
T Consensus 58 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 58 LRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp TCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 4799999876433334455667899999866
No 53
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=32.92 E-value=40 Score=27.05 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=28.6
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceee
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 66 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDia 66 (261)
+..+.||+.....+...+.++...|||+|.+ |+..+-..+++.
T Consensus 58 ~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 100 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNI 100 (275)
T ss_dssp SCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEE
Confidence 5678888877655556677888889999987 443332334443
No 54
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=32.46 E-value=1.6e+02 Score=25.79 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCchhHHHHh-hcCCCEEEEecCCCCCC-cceeeccC
Q psy9845 24 EPRLLVVTDPHTDHQPITEAA-YVNIPVIAFCNTESPLR-FVDIAIPC 69 (261)
Q Consensus 24 EPrLLVVTDPraDhQALtEAS-~VNIPtIALcDTDSpL~-~VDiaIPc 69 (261)
.|+++|++....+..-+.++- +.+.+||+|++.+|++. ..|+.|..
T Consensus 79 ~~dlvI~iS~SG~T~e~l~a~~~aka~viaIT~~~S~La~~ad~~l~~ 126 (325)
T 2e5f_A 79 EVELAVGISRSGETTEILLALEKINVKKLGITTRESSLTRMCDYSLVV 126 (325)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHTCCSCEEEEESSSCHHHHHSSEEEEC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhCCCEEEEECCCCHHHHhcCEEEec
Confidence 458888888766654333332 22399999999866653 35555443
No 55
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=32.33 E-value=43 Score=27.56 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=27.0
Q ss_pred CCCCEEEEeCCCCC--chhHHHHhhcCCCEEEEecCCCC
Q psy9845 23 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESP 59 (261)
Q Consensus 23 rEPrLLVVTDPraD--hQALtEAS~VNIPtIALcDTDSp 59 (261)
+.++.||+.....+ ...+.++...|||+|.+ |++.+
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~ 97 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV-DTRPK 97 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE-SCCCS
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE-cCCCc
Confidence 56899988765555 66788899999999976 44443
No 56
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.21 E-value=1.1e+02 Score=24.90 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=28.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.++...|||+|.+ |++.+-..+++..
T Consensus 66 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 109 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRMHPKMVFL-NRAFDALPDASFC 109 (290)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEEC
T ss_pred cCccEEEEecCCCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEEE
Confidence 5688888876655555677777789999976 5443322344433
No 57
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=31.81 E-value=1.3e+02 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.++...|||+|.+ |.+.+...+++..
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 107 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFD 107 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEE
Confidence 4689999988776667888899999999866 5544333455544
No 58
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.50 E-value=53 Score=26.60 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+..... ...+..+...|||+|.+ |.+.+...+++..
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 104 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVV 104 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEE
T ss_pred CCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEE
Confidence 5788999887766 66778888899999977 4444333344444
No 59
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.61 E-value=1.4e+02 Score=24.51 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESP 59 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSp 59 (261)
+..+.||+.....+...+.++...|||+|.+ |.+.+
T Consensus 67 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~ 102 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTS 102 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCS
T ss_pred CCcCEEEEcCcccChHHHHHHHhCCCCEEEE-CCCCc
Confidence 5789999987766667788888899999866 44443
No 60
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=29.55 E-value=46 Score=30.04 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.1
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNT 56 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDT 56 (261)
..||++++.+.....-+..-|.+.|||++ .+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~ea 125 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEA 125 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESC
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeC
Confidence 36999999988777667788999999965 4443
No 61
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=29.32 E-value=46 Score=28.01 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEE
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAF 53 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIAL 53 (261)
-.|||||..........+..-+.+||||+.+
T Consensus 58 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 58 LRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred cCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 4799998866433334556667899999865
No 62
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.07 E-value=1.4e+02 Score=24.46 Aligned_cols=44 Identities=5% Similarity=-0.071 Sum_probs=31.4
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.++...|||+|.+ |++.+...+++..
T Consensus 82 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~ 125 (305)
T 3huu_A 82 KSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHID 125 (305)
T ss_dssp TCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEE
T ss_pred CCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEE
Confidence 5689999987766667788888899999866 5544433355544
No 63
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.90 E-value=1.7e+02 Score=23.68 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTE 57 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTD 57 (261)
+..+.||+.....+...+.++...|||+|.+ |++
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~ 96 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRS 96 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCC
T ss_pred CCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCc
Confidence 5688888876655556778888889999977 444
No 64
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.73 E-value=1.2e+02 Score=24.63 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.++...|||+|.+ |++.+-..+++..
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 106 (291)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVL 106 (291)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEE
Confidence 5689999887766777888888899999966 5554433345444
No 65
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=28.61 E-value=42 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=21.1
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEE
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAF 53 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIAL 53 (261)
-.|||||..+-..+...+..-+.+||||+.+
T Consensus 56 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 86 (245)
T 1n2z_A 56 LKPDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (245)
T ss_dssp TCCSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHCCCcEEEe
Confidence 4799998864333334555667889999854
No 66
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=28.50 E-value=65 Score=25.95 Aligned_cols=43 Identities=7% Similarity=0.032 Sum_probs=28.4
Q ss_pred CCCCEEEEeCCCCCchhHHHHhh-cCCCEEEEecCCCCCCcceee
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAY-VNIPVIAFCNTESPLRFVDIA 66 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~-VNIPtIALcDTDSpL~~VDia 66 (261)
+..+.||+.....+...+.++.. .+||+|.+ |+..+-..+++.
T Consensus 76 ~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V 119 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSV 119 (296)
T ss_dssp TTCSEEEEECSSSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEE
T ss_pred cCCCEEEEecCCCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEE
Confidence 56888888766555566777777 89999876 554433334443
No 67
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=28.35 E-value=49 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=25.1
Q ss_pred CCCCEEEEeCCCC------------CchhHHHHhhcCCCEEEEec
Q psy9845 23 REPRLLVVTDPHT------------DHQPITEAAYVNIPVIAFCN 55 (261)
Q Consensus 23 rEPrLLVVTDPra------------DhQALtEAS~VNIPtIALcD 55 (261)
..++.||+..+.. ....|+++...++|++++|-
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 85 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCL 85 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEECh
Confidence 5789999988643 23466777778999999984
No 68
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.23 E-value=97 Score=25.03 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 24 EPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 24 EPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
..+.||+.....+...+.++...+||+|.+ |++.
T Consensus 57 ~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 90 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEKFAERGHSIVVL-DRTT 90 (277)
T ss_dssp TCSEEEEECTTSCHHHHHHHHHTTCEEEES-SSCC
T ss_pred cccEEEEecCCCCHHHHHHHHhcCCCEEEE-ecCC
Confidence 578888877655556777888889999876 5443
No 69
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.05 E-value=65 Score=25.64 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCC-CCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPH-TDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPr-aDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.... .+...+.++...|||+|.+ |++.+...+++..
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 101 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVI 101 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEE
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEE
Confidence 568888887654 3466778888899999866 5544433345544
No 70
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.00 E-value=1.9e+02 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCEEEEeCC--CCCchhHHHHhhcCCCEEEEecCCCC
Q psy9845 25 PRLLVVTDP--HTDHQPITEAAYVNIPVIAFCNTESP 59 (261)
Q Consensus 25 PrLLVVTDP--raDhQALtEAS~VNIPtIALcDTDSp 59 (261)
++.||+... ......+.++...|||+|.+ |++.+
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 95 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLA 95 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEE-ecCCC
Confidence 899988763 34556788888999999977 44443
No 71
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=26.78 E-value=34 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.2
Q ss_pred hhcccCCCCEEEEeCCCC------------------------CchhHHHHhhcCCCEEEEe
Q psy9845 18 FQAAFREPRLLVVTDPHT------------------------DHQPITEAAYVNIPVIAFC 54 (261)
Q Consensus 18 IQaaFrEPrLLVVTDPra------------------------DhQALtEAS~VNIPtIALc 54 (261)
+.......|.||++.-.. +...|+++...++|++++|
T Consensus 55 ~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC 115 (254)
T 3fij_A 55 AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAIC 115 (254)
T ss_dssp HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEEC
Confidence 444456789999987421 3356788888999999998
No 72
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=26.46 E-value=2e+02 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=25.1
Q ss_pred CCCCEEEEeCCCCCc--hhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDh--QALtEAS~VNIPtIALcDTDS 58 (261)
+.++.||+.....+. ..+.++...+||+|.+ |+..
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 100 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGM 100 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCC
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE-CCCC
Confidence 568888887655544 5677777889999876 4433
No 73
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=26.45 E-value=73 Score=26.38 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCCCc--hhHHHHhhcCCCEEEEecCCCCC-Ccceeec
Q psy9845 23 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDh--QALtEAS~VNIPtIALcDTDSpL-~~VDiaI 67 (261)
+.++.||+.....+. ..+.++...|||+|.+ |++.+. ..+++..
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 102 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIG 102 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEC
Confidence 578988886544332 4677888899999976 444332 2344444
No 74
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.03 E-value=2.4e+02 Score=23.10 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCCCEEEEeCCCCC--chhHHHHhhcCCCEEEEecCCCCCCcc
Q psy9845 23 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLRFV 63 (261)
Q Consensus 23 rEPrLLVVTDPraD--hQALtEAS~VNIPtIALcDTDSpL~~V 63 (261)
+.++.||+.....+ ...+.++...|||+|.+ |++.+-..+
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~ 98 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAY-DRMINDADI 98 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEE-SSCCTTSCC
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCc
Confidence 57899998876554 36788888999999876 554443344
No 75
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.68 E-value=2.4e+02 Score=23.67 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCN 55 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcD 55 (261)
+..+.||+.....+...+..+...+||+|.+-+
T Consensus 117 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 117 HRPDGVLITGLSHAEPFERILSQHALPVVYMMD 149 (339)
T ss_dssp TCCSEEEEECSCCCTTHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEee
Confidence 568999998776666777888889999998844
No 76
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=25.18 E-value=69 Score=27.34 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCN 55 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcD 55 (261)
-.|||||...- .+...+..-+.+||||+.+-.
T Consensus 83 l~PDlIi~~~~-~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 83 LKPDVVFVTNY-APSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp TCCSEEEEETT-CCHHHHHHHHTTTCCEEEECS
T ss_pred cCCCEEEEeCC-CChHHHHHHHHcCCCEEEEec
Confidence 47999998754 234456666788999998743
No 77
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.91 E-value=1.4e+02 Score=24.18 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+...+.+.. .+||+|.+ |++.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~l~-~~iPvV~~-~~~~ 96 (285)
T 3c3k_A 63 KMVDGVITMDALSELPELQNII-GAFPWVQC-AEYD 96 (285)
T ss_dssp TCCSEEEECCCGGGHHHHHHHH-TTSSEEEE-SSCC
T ss_pred CCCCEEEEeCCCCChHHHHHHh-cCCCEEEE-cccc
Confidence 5688888876544445566777 89999987 4443
No 78
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.56 E-value=55 Score=26.51 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=30.1
Q ss_pred cCCCCEEEEeCCCCC--chhHHHHhhcCCCEEEEecCCCCC-Ccceeecc
Q psy9845 22 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPL-RFVDIAIP 68 (261)
Q Consensus 22 FrEPrLLVVTDPraD--hQALtEAS~VNIPtIALcDTDSpL-~~VDiaIP 68 (261)
.+.++.||+.....+ ...+.++...|||+|.+ |++.+- ..+++...
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~ 115 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQ 115 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEEC
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEec
Confidence 367899998876543 45678888889999876 444332 23455443
No 79
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=23.43 E-value=36 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=24.5
Q ss_pred CCCCEEEEeCCCCC--chhHHHHhhcCCCEEEE
Q psy9845 23 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAF 53 (261)
Q Consensus 23 rEPrLLVVTDPraD--hQALtEAS~VNIPtIAL 53 (261)
+.++.||+.....+ ...+.++. .|||+|.+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEe
Confidence 56899998876666 66788888 99999977
No 80
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.26 E-value=61 Score=26.42 Aligned_cols=35 Identities=6% Similarity=0.006 Sum_probs=20.7
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+...+.++...+||+|.+ |++.
T Consensus 64 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 98 (290)
T 3clk_A 64 RPVMGILLLSIALTDDNLQLLQSSDVPYCFL-SMGF 98 (290)
T ss_dssp SCCSEEEEESCC----CHHHHHCC--CEEEE-SCC-
T ss_pred cCCCEEEEecccCCHHHHHHHHhCCCCEEEE-cCCC
Confidence 5688888877654445677777789999876 4443
No 81
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=23.21 E-value=89 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCCCEEEEeCCCCCc--hhHHHHhhcCCCEEEEe
Q psy9845 23 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFC 54 (261)
Q Consensus 23 rEPrLLVVTDPraDh--QALtEAS~VNIPtIALc 54 (261)
+..+.||+.....+. ..+.++...|||+|.+-
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEES
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 568888887554443 46778888899999773
No 82
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.73 E-value=71 Score=26.07 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCCEEEEeCCCCC--chhHHHHhhcCCCEEEEecCCCCCC-cceeec
Q psy9845 23 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLR-FVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraD--hQALtEAS~VNIPtIALcDTDSpL~-~VDiaI 67 (261)
+.++.||+.....+ ...+.++...|||+|.+ |++.+.. .+++..
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 106 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLG 106 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEEC
Confidence 56898888754433 56788888999999876 5544332 344444
No 83
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.26 E-value=82 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+...+.+....+||+|.+ |++.
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 152 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVLV-GTID 152 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEEE-SCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cccc
Confidence 5678888877655555677777789999876 5443
No 84
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=21.84 E-value=75 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.9
Q ss_pred cCCCCEEEEeCCCC------------CchhHHHHhhcCCCEEEEec
Q psy9845 22 FREPRLLVVTDPHT------------DHQPITEAAYVNIPVIAFCN 55 (261)
Q Consensus 22 FrEPrLLVVTDPra------------DhQALtEAS~VNIPtIALcD 55 (261)
...++.||+..+.. ....|+++...++|+.++|-
T Consensus 38 l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 83 (200)
T 1ka9_H 38 HEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 83 (200)
T ss_dssp CSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTH
T ss_pred cccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcH
Confidence 34678888877443 24567888888999999983
No 85
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.79 E-value=53 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.+....|||+|.+ |++.+ .+++..
T Consensus 67 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~--~~~~V~ 108 (289)
T 3g85_A 67 NSFDAAIIANISNYDLEYLNKASLTLPIILF-NRLSN--KYSSVN 108 (289)
T ss_dssp TCCSEEEESSCCHHHHHHHHHCCCSSCEEEE-SCCCS--SSEEEE
T ss_pred cCCCEEEEecCCcccHHHHHhccCCCCEEEE-CCCCC--CCCEEE
Confidence 5688999887655555666777789999876 44432 344444
No 86
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.38 E-value=1.8e+02 Score=23.75 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.4
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCCCCCcceeec
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 67 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDSpL~~VDiaI 67 (261)
+..+.||+.....+...+.+... |||+|.+ |.+.+-..+++..
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~ 107 (289)
T 3k9c_A 65 ERCEAAILLGTRFDTDELGALAD-RVPALVV-ARASGLPGVGAVR 107 (289)
T ss_dssp TTEEEEEEETCCCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEE
Confidence 56788998877767677777777 9999966 5544433345444
No 87
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=21.36 E-value=2.5e+02 Score=23.02 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=30.1
Q ss_pred CCCCEEEEeCCCCCch-hHHHHhhcCCCEEEEecCCCCCCcceeecc
Q psy9845 23 REPRLLVVTDPHTDHQ-PITEAAYVNIPVIAFCNTESPLRFVDIAIP 68 (261)
Q Consensus 23 rEPrLLVVTDPraDhQ-ALtEAS~VNIPtIALcDTDSpL~~VDiaIP 68 (261)
+..+.||+.....+.. .+.+... |||+|.+ |.+.+. .+++...
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~~ 113 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVIL 113 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEEE
T ss_pred CCCcEEEEecCCCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEEE
Confidence 5689999987776666 7888888 9999876 554443 4454443
No 88
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=21.11 E-value=1.4e+02 Score=23.18 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCCEEEEeCCCCCch--------hHHHHhhcCCCEEEEecCCCCCCcceeeccCCCCCcc
Q psy9845 24 EPRLLVVTDPHTDHQ--------PITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPH 75 (261)
Q Consensus 24 EPrLLVVTDPraDhQ--------ALtEAS~VNIPtIALcDTDSpL~~VDiaIPcNNds~~ 75 (261)
.|++||++.=-.+.. .+..-+.+++|+ |.||+|.|...
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv--------------~~v~GNHD~~~ 77 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPT--------------AYVPGPQDAPI 77 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCE--------------EEECCTTSCSH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcE--------------EEECCCCCchh
Confidence 689999876444432 333444456665 47899999754
No 89
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.12 E-value=73 Score=26.71 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCCchhHHHHhhcCCCEEEEecCCC
Q psy9845 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 58 (261)
Q Consensus 23 rEPrLLVVTDPraDhQALtEAS~VNIPtIALcDTDS 58 (261)
+..+.||+.....+...+.++...|||+|.+ |++.
T Consensus 115 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 149 (332)
T 2hsg_A 115 KQVDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIE 149 (332)
T ss_dssp CSSCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCC
T ss_pred CCCcEEEEecCCCCHHHHHHHHhCCCCEEEE-cccc
Confidence 5678888877655556777887889999876 5443
Done!