Your job contains 1 sequence.
>psy9845
MISLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPL
RFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEE
QAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKES
AAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADD
WTTPVGADDWGQDWSNSTSQW
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9845
(261 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6P8D1 - symbol:rpsa "40S ribosomal protein SA"... 431 2.6e-47 2
UNIPROTKB|E2RJ06 - symbol:RPSA "Uncharacterized protein" ... 429 3.3e-47 2
FB|FBgn0003517 - symbol:sta "stubarista" species:7227 "Dr... 440 6.0e-46 2
UNIPROTKB|P50890 - symbol:RPSA "40S ribosomal protein SA"... 431 2.6e-45 2
UNIPROTKB|F1SJR1 - symbol:F1SJR1 "Uncharacterized protein... 429 4.1e-45 2
UNIPROTKB|Q4GWZ2 - symbol:RPSA "40S ribosomal protein SA"... 429 4.1e-45 2
UNIPROTKB|A6YRY8 - symbol:RPSA "40S ribosomal protein SA"... 429 1.4e-44 2
UNIPROTKB|C9J9K3 - symbol:RPSA "40S ribosomal protein SA"... 429 1.4e-44 2
UNIPROTKB|J9JHJ2 - symbol:RPSA "Uncharacterized protein" ... 429 3.7e-44 2
UNIPROTKB|Q2L9X0 - symbol:RPSA "40S ribosomal protein SA"... 429 3.7e-44 2
UNIPROTKB|P26452 - symbol:RPSA "40S ribosomal protein SA"... 429 4.7e-44 2
MGI|MGI:105381 - symbol:Rpsa "ribosomal protein SA" speci... 429 4.7e-44 2
RGD|71026 - symbol:Rpsa "ribosomal protein SA" species:10... 429 4.7e-44 2
UNIPROTKB|P08865 - symbol:RPSA "40S ribosomal protein SA"... 429 5.9e-44 2
UNIPROTKB|P38982 - symbol:Rpsa "40S ribosomal protein SA"... 423 2.0e-43 2
UNIPROTKB|A6NE09 - symbol:RPSAP58 "Protein RPSAP58" speci... 421 5.2e-43 2
UNIPROTKB|F1NKH1 - symbol:RPSA "40S ribosomal protein SA"... 400 4.6e-42 2
ZFIN|ZDB-GENE-040426-811 - symbol:rpsa "ribosomal protein... 440 1.7e-41 1
UNIPROTKB|I3LC48 - symbol:RPSA "40S ribosomal protein SA"... 382 4.0e-39 2
UNIPROTKB|Q3YAI0 - symbol:LAMR1 "Ribosomal protein SA" sp... 407 5.5e-38 1
ZFIN|ZDB-GENE-050417-382 - symbol:zgc:110181 "zgc:110181"... 381 3.1e-35 1
UNIPROTKB|Q8H3I3 - symbol:B1056G08.113 "Os07g0616600 prot... 380 4.0e-35 1
UNIPROTKB|Q01291 - symbol:rps-0 "40S ribosomal protein S0... 351 5.0e-35 2
UNIPROTKB|Q7RBT0 - symbol:PY06059 "40S ribosomal protein ... 353 6.3e-35 2
TAIR|locus:2193997 - symbol:P40 "AT1G72370" species:3702 ... 375 1.3e-34 1
ASPGD|ASPL0000040942 - symbol:AN3172 species:162425 "Emer... 373 2.2e-34 1
UNIPROTKB|Q5B8F8 - symbol:rps0 "40S ribosomal protein S0"... 373 2.2e-34 1
GENEDB_PFALCIPARUM|PF10_0264 - symbol:PF10_0264 "40S ribo... 341 2.7e-34 2
UNIPROTKB|Q8IJD4 - symbol:PF10_0264 "40S ribosomal protei... 341 2.7e-34 2
WB|WBGene00004469 - symbol:rps-0 species:6239 "Caenorhabd... 332 1.6e-32 2
UNIPROTKB|P46769 - symbol:rps-0 "40S ribosomal protein SA... 332 1.6e-32 2
POMBASE|SPBC685.06 - symbol:rps001 "40S ribosomal protein... 328 2.6e-32 2
CGD|CAL0000370 - symbol:YST1 species:5476 "Candida albica... 344 2.6e-31 1
UNIPROTKB|O42817 - symbol:RPS0 "40S ribosomal protein S0"... 344 2.6e-31 1
DICTYBASE|DDB_G0270316 - symbol:rpsA "40S ribosomal prote... 334 3.0e-30 1
UNIPROTKB|A8IB25 - symbol:CHLREDRAFT_126059 "40S ribosoma... 331 6.2e-30 1
UNIPROTKB|Q75CQ9 - symbol:RPS0 "40S ribosomal protein S0"... 328 1.3e-29 1
UNIPROTKB|D4A495 - symbol:D4A495 "Uncharacterized protein... 266 5.2e-29 3
SGD|S000003446 - symbol:RPS0A "Ribosomal 40S subunit prot... 322 5.6e-29 1
POMBASE|SPAPJ698.02c - symbol:rps002 "40S ribosomal prote... 315 3.1e-28 1
SGD|S000004038 - symbol:RPS0B "Protein component of the s... 315 3.1e-28 1
TAIR|locus:2084988 - symbol:RPSAb "AT3G04770" species:370... 315 3.1e-28 1
UNIPROTKB|F1M8B9 - symbol:F1M8B9 "Uncharacterized protein... 260 4.0e-26 2
UNIPROTKB|E2RGM2 - symbol:E2RGM2 "Uncharacterized protein... 276 4.2e-24 1
UNIPROTKB|F1S1E3 - symbol:F1S1E3 "Uncharacterized protein... 224 2.3e-22 2
UNIPROTKB|P95993 - symbol:rps2 "30S ribosomal protein S2"... 212 2.5e-17 1
UNIPROTKB|F1LT21 - symbol:F1LT21 "Uncharacterized protein... 212 2.5e-17 1
UNIPROTKB|J9P9K4 - symbol:J9P9K4 "Uncharacterized protein... 185 1.8e-14 1
UNIPROTKB|I3LIK7 - symbol:I3LIK7 "Uncharacterized protein... 180 6.2e-14 1
UNIPROTKB|Q8TT39 - symbol:rps2 "30S ribosomal protein S2"... 175 2.1e-13 1
UNIPROTKB|F1LVE0 - symbol:F1LVE0 "Uncharacterized protein... 101 1.0e-08 2
RGD|1560987 - symbol:RGD1560987 "similar to 40S ribosomal... 129 6.4e-08 2
UNIPROTKB|I3L6M5 - symbol:I3L6M5 "Uncharacterized protein... 116 9.1e-05 1
>UNIPROTKB|Q6P8D1 [details] [associations]
symbol:rpsa "40S ribosomal protein SA" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000028 "ribosomal small
subunit assembly" evidence=ISS] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 HSSP:O29132 CTD:3921 OrthoDB:EOG40ZQZ6
HAMAP:MF_03016 EMBL:CR942700 EMBL:BC061298 EMBL:BC168799
RefSeq:NP_989068.1 UniGene:Str.6703 ProteinModelPortal:Q6P8D1
SMR:Q6P8D1 STRING:Q6P8D1 PRIDE:Q6P8D1 Ensembl:ENSXETT00000057070
GeneID:394665 KEGG:xtr:394665 Xenbase:XB-GENE-972235
InParanoid:Q6P8D1 OMA:XIEKEEQ Bgee:Q6P8D1 Uniprot:Q6P8D1
Length = 306
Score = 431 (156.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 78/101 (77%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 81 (33.6 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 31/108 (28%), Positives = 44/108 (40%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAPTESWNDTV-VPSADLAPQSWAEESA 221
E EKEEQA E A + PV EF A W++ V VPS + Q + E
Sbjct: 209 EIEKEEQAAAEKATTKEEYQGEWTAPVAEFP-QAEVADWSEGVQVPSVPI--QQFPAERP 265
Query: 222 SIXXXXXXXXXXXXXXXDDWTT-PVGADDWG-------QDWSNSTSQW 261
I +DW++ P DDW +W+ +T++W
Sbjct: 266 EIPAAKPAA--------EDWSSQPASTDDWSAAPTAQASEWTGTTTEW 305
>UNIPROTKB|E2RJ06 [details] [associations]
symbol:RPSA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 OMA:ENVNFQM
GeneTree:ENSGT00390000015036 EMBL:AAEX03013498 UniGene:Cfa.27618
Ensembl:ENSCAFT00000008199 NextBio:20852580 Uniprot:E2RJ06
Length = 314
Score = 429 (156.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 82 (33.9 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 29/108 (26%), Positives = 41/108 (37%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWNDTV-VPSADLAPQSWAEES 220
E EKEEQA E A + P EF A P W++ V VPS + Q + E
Sbjct: 209 EIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPI--QQFPTEM 266
Query: 221 ASIXXXXXXXXXXXXXXXDDWTTPVGADDWGQ-------DWSNSTSQW 261
I +DW+ +DW +W +T++W
Sbjct: 267 C-IWWNSQHSAGGSVFLTEDWSAQPATEDWSAAPTAQATEWVGTTTEW 313
>FB|FBgn0003517 [details] [associations]
symbol:sta "stubarista" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IBA;IDA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;IBA;NAS] [GO:0006412 "translation"
evidence=ISS;IBA;NAS] [GO:0043022 "ribosome binding" evidence=IPI]
[GO:0005840 "ribosome" evidence=NAS;IDA] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0000028 "ribosomal small subunit assembly" evidence=IBA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA] [GO:0030686 "90S
preribosome" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0007275 GO:GO:0005634 GO:GO:0005875
GO:GO:0005811 GO:GO:0006412 EMBL:AE014298 GO:GO:0043022
GO:GO:0003735 GO:GO:0000022 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 ChiTaRS:EMD GO:GO:0006407 EMBL:AL031027
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 GeneTree:ENSGT00390000015036 EMBL:M90422
EMBL:AY118899 EMBL:BT029094 EMBL:M77133 PIR:T13602
RefSeq:NP_476750.1 RefSeq:NP_726744.1 RefSeq:NP_726745.2
UniGene:Dm.33985 UniGene:Dm.4723 ProteinModelPortal:P38979
SMR:P38979 DIP:DIP-17178N IntAct:P38979 MINT:MINT-1635735
STRING:P38979 PaxDb:P38979 PRIDE:P38979 EnsemblMetazoa:FBtr0070291
GeneID:31106 KEGG:dme:Dmel_CG14792 CTD:104044 FlyBase:FBgn0003517
InParanoid:P38979 OrthoDB:EOG4ZCRMJ PhylomeDB:P38979
GenomeRNAi:31106 NextBio:771969 Bgee:P38979 GermOnline:CG14792
Uniprot:P38979
Length = 313
Score = 440 (159.9 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 83/101 (82%), Positives = 89/101 (88%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q AFREPRLLVVTDP+TDHQPI EA+YVNIPVIAF NT+SPLR++DIAIPCNNK
Sbjct: 151 FTN-QIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNK 209
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
S HSIGLMWWLLAREVLR RGTI R +W VVVDLFFYRDP
Sbjct: 210 SAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDP 250
Score = 59 (25.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHA--PTESWNDTVVPSADLAPQSWAEES 220
EAEKEE A KE + ++E H T +W D V + W E++
Sbjct: 252 EAEKEEAAAKE---LLPPPKIEEAVDHPVEETTNWADEVAAETVGGVEDWNEDT 302
>UNIPROTKB|P50890 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9031 "Gallus
gallus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IBA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0043236 "laminin binding" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043236
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:X94368 IPI:IPI00590239
RefSeq:NP_001007824.1 UniGene:Gga.34355 ProteinModelPortal:P50890
SMR:P50890 IntAct:P50890 STRING:P50890 PRIDE:P50890
Ensembl:ENSGALT00000019495 GeneID:395181 KEGG:gga:395181
InParanoid:P50890 NextBio:20815271 ArrayExpress:P50890
Uniprot:P50890
Length = 296
Score = 431 (156.8 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 78/101 (77%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 62 (26.9 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP T P ++A S + S+
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQTEWTAPAP----EFTAPPQPEVADWSEGVQVPSVPIQQF 263
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 264 PTEDWSAQPATEDWSAAPTAQ--ATEWVGTTTEW 295
Score = 42 (19.8 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 264 PTEDWSAQPATEDWSAAP 281
>UNIPROTKB|F1SJR1 [details] [associations]
symbol:F1SJR1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 OMA:XIEKEEQ EMBL:CU466503
Ensembl:ENSSSCT00000012334 ArrayExpress:F1SJR1 Uniprot:F1SJR1
Length = 211
Score = 429 (156.1 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 24 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 82
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 83 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 123
Score = 62 (26.9 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWNDTV-VPSADLAPQSWAEES 220
E EKEEQA E A + P EF A P W++ V VPS + Q + E
Sbjct: 125 EIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPI--QQFPTED 182
Query: 221 ASIXXXXXXXXXXXXXXXDDWTTPVGADDWGQDWSNSTSQW 261
S +DW+ A +W +T++W
Sbjct: 183 WS-----------AQPTTEDWSAAPTAQ--ATEWVGTTTEW 210
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 179 PTEDWSAQPTTEDWSAAP 196
>UNIPROTKB|Q4GWZ2 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466 OrthoDB:EOG40ZQZ6
HAMAP:MF_03016 EMBL:AM050292 RefSeq:NP_001032223.1
UniGene:Ssc.11095 ProteinModelPortal:Q4GWZ2 SMR:Q4GWZ2
STRING:Q4GWZ2 GeneID:641351 KEGG:ssc:641351 ArrayExpress:Q4GWZ2
Uniprot:Q4GWZ2
Length = 295
Score = 429 (156.1 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 62 (26.9 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWNDTV-VPSADLAPQSWAEES 220
E EKEEQA E A + P EF A P W++ V VPS + Q + E
Sbjct: 209 EIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPI--QQFPTED 266
Query: 221 ASIXXXXXXXXXXXXXXXDDWTTPVGADDWGQDWSNSTSQW 261
S +DW+ A +W +T++W
Sbjct: 267 WS-----------AQPTTEDWSAAPTAQ--ATEWVGTTTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPTTEDWSAAP 280
>UNIPROTKB|A6YRY8 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9940 "Ovis
aries" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HAMAP:MF_03015
HOVERGEN:HBG054466 HAMAP:MF_03016 EMBL:EF649775 EMBL:EF222474
RefSeq:NP_001098733.1 UniGene:Oar.22928 ProteinModelPortal:A6YRY8
SMR:A6YRY8 GeneID:100125628 Uniprot:A6YRY8
Length = 295
Score = 429 (156.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 57 (25.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWNDTV-VPSADL 211
E EKEEQA E A + P EF A P W++ V VPS +
Sbjct: 209 EIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVPSVPI 259
Score = 39 (18.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSARPFTEDWSAAP 280
>UNIPROTKB|C9J9K3 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 HGNC:HGNC:6502 ChiTaRS:RPSA
EMBL:AC099332 IPI:IPI00927101 ProteinModelPortal:C9J9K3 SMR:C9J9K3
STRING:C9J9K3 PRIDE:C9J9K3 Ensembl:ENST00000458478
ArrayExpress:C9J9K3 Bgee:C9J9K3 Uniprot:C9J9K3
Length = 264
Score = 429 (156.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 57 (25.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 169 EAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWNDTV-VPSADL 211
E EKEEQA E A + P EF A P W++ V VPS +
Sbjct: 209 EIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPI 259
>UNIPROTKB|J9JHJ2 [details] [associations]
symbol:RPSA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998
GeneTree:ENSGT00390000015036 CTD:3921 EMBL:AAEX03013498
RefSeq:NP_001239159.1 ProteinModelPortal:J9JHJ2
Ensembl:ENSCAFT00000048108 GeneID:477029 KEGG:cfa:477029
Uniprot:J9JHJ2
Length = 295
Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 53 (23.7 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 25/100 (25%), Positives = 37/100 (37%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + T AD W+E
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP--EFTATQPEVAD-----WSE------GVQV 254
Query: 229 XXXXXXXXXXDDWTTPVGADDWGQ-------DWSNSTSQW 261
+DW+ +DW +W +T++W
Sbjct: 255 PSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|Q2L9X0 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9534
"Chlorocebus aethiops" [GO:0005886 "plasma membrane" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HAMAP:MF_03015 HOVERGEN:HBG054466 HAMAP:MF_03016
EMBL:DQ343296 ProteinModelPortal:Q2L9X0 SMR:Q2L9X0 PRIDE:Q2L9X0
Uniprot:Q2L9X0
Length = 295
Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 53 (23.7 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 25/100 (25%), Positives = 37/100 (37%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + T AD W+E
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP--EFTATQPEVAD-----WSE------GVQV 254
Query: 229 XXXXXXXXXXDDWTTPVGADDWGQ-------DWSNSTSQW 261
+DW+ +DW +W +T++W
Sbjct: 255 PSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|P26452 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9913 "Bos
taurus" [GO:0016020 "membrane" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043236 "laminin binding" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006407 "rRNA export from nucleus" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0000461
"endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=ISS] [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043236
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:M64923 EMBL:BC102490
IPI:IPI00709865 PIR:A38464 RefSeq:NP_776804.1 UniGene:Bt.49711
ProteinModelPortal:P26452 SMR:P26452 STRING:P26452 PRIDE:P26452
Ensembl:ENSBTAT00000012866 GeneID:281898 KEGG:bta:281898 CTD:3921
HOVERGEN:HBG054466 InParanoid:P26452 OrthoDB:EOG40ZQZ6
NextBio:20805794 ArrayExpress:P26452 HAMAP:MF_03016 Uniprot:P26452
Length = 295
Score = 429 (156.1 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 52 (23.4 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + ++A S + S+
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP-----EFTAAQPEVADWSEGVQVPSVPIQQF 262
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 263 PTEDWSAQPSTEDWSAAPTAQ--ATEWVGTTTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPSTEDWSAAP 280
>MGI|MGI:105381 [details] [associations]
symbol:Rpsa "ribosomal protein SA" species:10090 "Mus
musculus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0005604 "basement membrane" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IDA] [GO:0016020
"membrane" evidence=ISO] [GO:0016337 "cell-cell adhesion"
evidence=ISO] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IBA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0031012 "extracellular matrix" evidence=ISO] [GO:0043022
"ribosome binding" evidence=ISO] [GO:0043025 "neuronal cell body"
evidence=ISO] [GO:0043236 "laminin binding" evidence=IDA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
MGI:MGI:105381 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412
GO:GO:0043236 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 EMBL:DQ360291 EMBL:DQ360292
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 ChiTaRS:RPSA EMBL:J02870
EMBL:X06406 EMBL:AF140348 EMBL:AK010423 EMBL:AK010985 EMBL:AK011041
EMBL:AK011043 EMBL:AK075778 EMBL:AK075790 EMBL:AK082935
EMBL:AK088954 EMBL:AK134224 EMBL:AK135488 EMBL:AK160551
EMBL:AK160625 EMBL:AK165219 EMBL:AK166697 EMBL:AK166874
EMBL:AK167132 EMBL:BC003829 EMBL:BC037195 EMBL:BC055886
EMBL:BC081461 EMBL:BC084677 EMBL:BC092041 EMBL:BC094902
EMBL:BC099601 EMBL:BC110285 IPI:IPI00123604 PIR:A29395
RefSeq:NP_035159.3 RefSeq:XP_003086186.1 UniGene:Mm.311972
UniGene:Mm.391708 UniGene:Mm.4071 ProteinModelPortal:P14206
SMR:P14206 IntAct:P14206 STRING:P14206 PhosphoSite:P14206
REPRODUCTION-2DPAGE:IPI00123604 REPRODUCTION-2DPAGE:P14206
SWISS-2DPAGE:P14206 PaxDb:P14206 PRIDE:P14206
Ensembl:ENSMUST00000035105 GeneID:100505031 GeneID:16785
KEGG:mmu:100505031 KEGG:mmu:16785 UCSC:uc009scd.2 InParanoid:P14206
ChEMBL:CHEMBL1075301 NextBio:290650 Bgee:P14206 CleanEx:MM_RPSA
Genevestigator:P14206 GermOnline:ENSMUSG00000032518 Uniprot:P14206
Length = 295
Score = 429 (156.1 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 52 (23.4 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + ++A S + S+
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP-----EFTAAQPEVADWSEGVQVPSVPIQQF 262
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 263 PTEDWSAQPATEDWSAAPTAQ--ATEWVGATTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>RGD|71026 [details] [associations]
symbol:Rpsa "ribosomal protein SA" species:10116 "Rattus
norvegicus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0005055 "laminin receptor activity" evidence=TAS] [GO:0005198
"structural molecule activity" evidence=IC] [GO:0005604 "basement
membrane" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=ISO;ISS]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=ISO] [GO:0016020 "membrane" evidence=IDA] [GO:0016337
"cell-cell adhesion" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISO;IDA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] [GO:0031012 "extracellular matrix" evidence=IDA]
[GO:0043022 "ribosome binding" evidence=ISO] [GO:0043025 "neuronal
cell body" evidence=IDA] [GO:0043236 "laminin binding" evidence=ISO]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
RGD:71026 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043025
GO:GO:0003735 GO:GO:0016337 GO:GO:0005604 GO:GO:0000028
GO:GO:0030855 GO:GO:0005055 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:D25224 EMBL:FJ386454
EMBL:BC060578 EMBL:U04942 EMBL:M27798 IPI:IPI00215107 PIR:S42405
RefSeq:NP_058834.1 UniGene:Rn.121972 UniGene:Rn.161973
UniGene:Rn.999 ProteinModelPortal:P38983 SMR:P38983 IntAct:P38983
MINT:MINT-4568881 STRING:P38983 PhosphoSite:P38983 PRIDE:P38983
DNASU:29236 Ensembl:ENSRNOT00000025225 GeneID:29236 KEGG:rno:29236
UCSC:RGD:71026 InParanoid:P38983 NextBio:608498
Genevestigator:P38983 GermOnline:ENSRNOG00000018645 Uniprot:P38983
Length = 295
Score = 429 (156.1 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 52 (23.4 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + ++A S + S+
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP-----EFTAAQPEVADWSEGVQVPSVPIQQF 262
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 263 PTEDWSAQPATEDWSAAPTAQ--ATEWVGATTEW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|P08865 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9606 "Homo
sapiens" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0030686
"90S preribosome" evidence=IBA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA;TAS] [GO:0043022 "ribosome
binding" evidence=IPI] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0007155 "cell
adhesion" evidence=NAS] [GO:0006412 "translation" evidence=IC;TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0000184
GO:GO:0006413 GO:GO:0007155 GO:GO:0043022 GO:GO:0003735
GO:GO:0000028 GO:GO:0030686 GO:GO:0000447 GO:GO:0006415
GO:GO:0006414 GO:GO:0022627 Reactome:REACT_1762 GO:GO:0006614
GO:GO:0019083 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
KO:K02998 HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:J03799 EMBL:X15005
EMBL:S37431 EMBL:U43901 EMBL:AF503367 EMBL:BT007219 EMBL:BC005391
EMBL:BC008867 EMBL:BC010418 EMBL:BC013827 EMBL:BC034537
EMBL:BC050688 EMBL:BC053370 EMBL:BC062714 EMBL:BC066941
EMBL:BC068062 EMBL:BC070263 EMBL:BC071693 EMBL:BC071968
EMBL:BC071969 EMBL:BC071970 EMBL:BC073863 EMBL:BC107567 EMBL:X61156
EMBL:U36484 EMBL:M14199 EMBL:AB007146 IPI:IPI00553164 PIR:A31233
RefSeq:NP_001012321.1 RefSeq:NP_002286.2 UniGene:Hs.449909 PDB:3BCH
PDBsum:3BCH ProteinModelPortal:P08865 SMR:P08865 IntAct:P08865
MINT:MINT-1402850 STRING:P08865 PhosphoSite:P08865 DMDM:125969
PaxDb:P08865 PRIDE:P08865 DNASU:3921 Ensembl:ENST00000301821
Ensembl:ENST00000443003 GeneID:3921 KEGG:hsa:3921 UCSC:uc003cjp.3
GeneCards:GC03P039448 HGNC:HGNC:6502 HPA:CAB009561 MIM:150370
neXtProt:NX_P08865 PharmGKB:PA30287 InParanoid:P08865
PhylomeDB:P08865 ChEMBL:CHEMBL6119 ChiTaRS:RPSA
EvolutionaryTrace:P08865 GenomeRNAi:3921 NextBio:15405
ArrayExpress:P08865 Bgee:P08865 Genevestigator:P08865
GermOnline:ENSG00000168028 Uniprot:P08865
Length = 295
Score = 429 (156.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 77/101 (76%), Positives = 87/101 (86%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 51 (23.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 25/100 (25%), Positives = 36/100 (36%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + T AD W+E
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP--EFTATQPEVAD-----WSE------GVQV 254
Query: 229 XXXXXXXXXXDDWTTPVGADDWGQ-------DWSNSTSQW 261
+DW+ +DW +W +T+ W
Sbjct: 255 PSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDW 294
Score = 42 (19.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|P38982 [details] [associations]
symbol:Rpsa "40S ribosomal protein SA" species:10029
"Cricetulus griseus" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=ISS] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466
HAMAP:MF_03016 EMBL:L16589 EMBL:Z22749 PIR:S33438
RefSeq:NP_001230962.1 ProteinModelPortal:P38982 SMR:P38982
PRIDE:P38982 GeneID:100689045 Uniprot:P38982
Length = 295
Score = 423 (154.0 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 76/101 (75%), Positives = 86/101 (85%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREV R RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYRDP 207
Score = 52 (23.4 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + ++A S + S+
Sbjct: 209 EIEKEEQAAAEKAVT-KEEFQGEWTAPAP-----EFTAAQPEVADWSEGVQVPSVPIQQF 262
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 263 PTEDWSAQPATEDWSAAPTAQ--ATEWVGATTEW 294
Score = 42 (19.8 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|A6NE09 [details] [associations]
symbol:RPSAP58 "Protein RPSAP58" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 OMA:ENVNFQM
HOVERGEN:HBG054466 EMBL:AC139769 IPI:IPI00793137 SMR:A6NE09
STRING:A6NE09 Ensembl:ENST00000354585 Ensembl:ENST00000496398
UCSC:uc002nrn.3 HGNC:HGNC:36809 Uniprot:A6NE09
Length = 295
Score = 421 (153.3 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 76/101 (75%), Positives = 86/101 (85%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAF EPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFWEPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDP 207
Score = 50 (22.7 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 26/102 (25%), Positives = 36/102 (35%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAH--APTESWNDTVVPSADLAPQSWAEESASIXXX 226
E EKEEQA E A K +EF AP+ + T AD W+E
Sbjct: 209 EIEKEEQAAAEKAVT---K--EEFQGEWTAPSPEFTATQPEVAD-----WSE------GV 252
Query: 227 XXXXXXXXXXXXDDWTTPVGADDWGQ-------DWSNSTSQW 261
+DW+ +DW +W +T+ W
Sbjct: 253 QVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDW 294
Score = 42 (19.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 263 PTEDWSAQPATEDWSAAP 280
>UNIPROTKB|F1NKH1 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 EMBL:AADN02001281 IPI:IPI00581613
Ensembl:ENSGALT00000037553 ArrayExpress:F1NKH1 Uniprot:F1NKH1
Length = 179
Score = 400 (145.9 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 70/90 (77%), Positives = 79/90 (87%)
Query: 24 EPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWL 83
EPRLLVVTDP DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK HS+GLMWW+
Sbjct: 1 EPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWM 60
Query: 84 LAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 61 LAREVLRMRGTISREHPWEVMPDLYFYRDP 90
Score = 62 (26.9 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP T P ++A S + S+
Sbjct: 92 EIEKEEQAAAEKAVT-KEEFQTEWTAPAP----EFTAPPQPEVADWSEGVQVPSVPIQQF 146
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 147 PTEDWSAQPATEDWSAAPTAQ--ATEWVGTTTEW 178
Score = 42 (19.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 147 PTEDWSAQPATEDWSAAP 164
>ZFIN|ZDB-GENE-040426-811 [details] [associations]
symbol:rpsa "ribosomal protein SA" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IBA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;IBA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IBA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IBA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 ZFIN:ZDB-GENE-040426-811 GO:GO:0005886
GO:GO:0005634 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 GeneTree:ENSGT00390000015036 HSSP:O29132
CTD:3921 HAMAP:MF_03016 EMBL:AY391434 EMBL:BC044504 EMBL:BC062859
IPI:IPI00508284 RefSeq:NP_957346.1 UniGene:Dr.75127
ProteinModelPortal:Q803F6 SMR:Q803F6 STRING:Q803F6 PRIDE:Q803F6
Ensembl:ENSDART00000135945 GeneID:394027 KEGG:dre:394027
InParanoid:Q803F6 NextBio:20814990 ArrayExpress:Q803F6 Bgee:Q803F6
Uniprot:Q803F6
Length = 308
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 97/212 (45%), Positives = 123/212 (58%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLL+VTDP DHQP+TEA+YVNIP IA CNT+SPLR+VDIAIPCNNK
Sbjct: 108 FTN-QIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNK 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIAD 132
PHS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDP
Sbjct: 167 GPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVG--- 223
Query: 133 KPADEFAAH--APTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQA-GKESAAAIADKPV 189
+EF AP +N + S G + + + +A GK + A +
Sbjct: 224 --KEEFQGEWTAPVPDFNQPEVADWS-EGVQVPSVPIQQFPAGIEAPGKPAPAEVY---A 277
Query: 190 DEFAAHAPTESWNDTVVPSADLAPQSWAEESA 221
++++A TE W+ P+A W +A
Sbjct: 278 EDWSAQPATEDWS--AAPTAQAG--DWGGATA 305
>UNIPROTKB|I3LC48 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 GeneTree:ENSGT00390000015036 EMBL:CU928418
EMBL:FP312619 Ensembl:ENSSSCT00000004148 Uniprot:I3LC48
Length = 293
Score = 382 (139.5 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 73/108 (67%), Positives = 83/108 (76%)
Query: 9 GLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDI 65
GLF F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDI
Sbjct: 101 GLFTPGTFTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPAIALCNTDSPLRYVDI 159
Query: 66 AIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
AIPCN K S+GLMWW+L +EVLR RG E W+V+ DL FYRDP
Sbjct: 160 AIPCNKKGALSVGLMWWMLTQEVLRMRGITSCEHPWEVMPDLSFYRDP 207
Score = 52 (23.4 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAP--TE----SWNDTV-VPSADLA--P-QSWAE 218
E EKEEQA E A ++ E+ A AP T+ +W++ V VPS + P + W+
Sbjct: 209 EIEKEEQASAEKAVT-KEEFQGEWTAPAPDATQPEVANWSEGVQVPSVPIQQFPAEDWSA 267
Query: 219 E 219
+
Sbjct: 268 Q 268
Score = 47 (21.6 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 134 PADEFAAHAPTESWNDTPILSVS 156
PA++++A TE W+ P + +
Sbjct: 261 PAEDWSAQPTTEDWSAVPTVQAT 283
Score = 38 (18.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 188 PVDEFAAHAPTESWNDTVVPS 208
P ++++A TE W+ VP+
Sbjct: 261 PAEDWSAQPTTEDWS--AVPT 279
>UNIPROTKB|Q3YAI0 [details] [associations]
symbol:LAMR1 "Ribosomal protein SA" species:9544 "Macaca
mulatta" [GO:0000028 "ribosomal small subunit assembly"
evidence=ISS] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006407 "rRNA export from nucleus" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] [GO:0030686 "90S preribosome" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00963 GO:GO:0006412
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 HOVERGEN:HBG054466 OrthoDB:EOG40ZQZ6
EMBL:DQ148158 UniGene:Mmu.19607 InParanoid:Q3YAI0 Uniprot:Q3YAI0
Length = 167
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 73/98 (74%), Positives = 84/98 (85%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q +AAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNNK
Sbjct: 71 FTN-QIRAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNK 129
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFY 110
HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FY
Sbjct: 130 GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFY 167
>ZFIN|ZDB-GENE-050417-382 [details] [associations]
symbol:zgc:110181 "zgc:110181" species:7955 "Danio
rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 ZFIN:ZDB-GENE-050417-382
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOVERGEN:HBG054466 EMBL:BC092777 IPI:IPI00570173
RefSeq:NP_001017838.1 UniGene:Dr.87993 ProteinModelPortal:Q568P4
SMR:Q568P4 GeneID:550536 KEGG:dre:550536 NextBio:20879777
Uniprot:Q568P4
Length = 295
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 85/189 (44%), Positives = 109/189 (57%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAFREPRLLVV DP DHQ I EA+YVNIPVIAFC+ +SPLR+VDIAIPCN K
Sbjct: 105 FTN-QIQAAFREPRLLVVADPLADHQSIVEASYVNIPVIAFCDVDSPLRYVDIAIPCNTK 163
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIAD 132
+PHS+GLM+W L REVLR R I R+ W+++ D+FFYR P +
Sbjct: 164 APHSLGLMFWFLTREVLRLRAMISRDTPWEIMPDMFFYRAPEDVDKEEQAKQEALAAMPV 223
Query: 133 KPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEF 192
+P + + E W+ T + S W EA QA + AA P +++
Sbjct: 224 RPIEADYSAPIAEDWS-TEVAPTS----W-----ADEATDFAQAAPVAPAA----P-EQW 268
Query: 193 AAHAPTESW 201
+A T+ W
Sbjct: 269 SAEPVTDDW 277
>UNIPROTKB|Q8H3I3 [details] [associations]
symbol:B1056G08.113 "Os07g0616600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0009507 GO:GO:0006412
GO:GO:0009651 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
EMBL:AP008213 EMBL:CM000144 GO:GO:0000447 GO:GO:0042256
GO:GO:0022627 EMBL:AP004988 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 KO:K02998 HSSP:O29132 OMA:QAGADWT PDB:3IZ6
PDBsum:3IZ6 EMBL:AK058308 EMBL:AK102735 EMBL:AK103952 EMBL:AK105968
RefSeq:NP_001060277.1 UniGene:Os.8273 STRING:Q8H3I3
EnsemblPlants:LOC_Os07g42450.1 GeneID:4343909 KEGG:osa:4343909
ProtClustDB:CLSN2919813 Uniprot:Q8H3I3
Length = 305
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 92/207 (44%), Positives = 109/207 (52%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q +F EPRLL++TDP TDHQPI E+A NIP IAFC+T+SP+R+VDI IP NNK
Sbjct: 112 FTN-QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIAD 132
SIG ++WLLAR VL+ RGTI KWDV+VDLFFYRDP
Sbjct: 171 GKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYG 230
Query: 133 KPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEF 192
A E+AA A ++W GG W A QAG + AA A
Sbjct: 231 AVA-EYAAPA-ADTW----------GGEWGTDAAAQPAAIPAQAGADWTAAPAPAAGGWD 278
Query: 193 AAHAPTESWNDTVVPSADLAPQ-SWAE 218
A AP W P AP +W E
Sbjct: 279 TAAAPAPGWEQGSAPVPAAAPTPNWGE 305
>UNIPROTKB|Q01291 [details] [associations]
symbol:rps-0 "40S ribosomal protein S0" species:367110
"Neurospora crassa OR74A" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
EMBL:AABX02000008 GO:GO:0030686 GO:GO:0000447 GO:GO:0022627
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
OrthoDB:EOG4KH646 EMBL:U36470 EMBL:AL669992 PIR:T47199
RefSeq:XP_956840.1 UniGene:Ncr.17013 ProteinModelPortal:Q01291
SMR:Q01291 STRING:Q01291 PRIDE:Q01291
EnsemblFungi:EFNCRT00000002664 GeneID:3872987 KEGG:ncr:NCU03393
Uniprot:Q01291
Length = 290
Score = 351 (128.6 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 63/94 (67%), Positives = 77/94 (81%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL++VTDP TD Q I EA+YVNIPVIA C+ +SP +VD+AIP NNK H+IG +
Sbjct: 117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDADSPTEYVDVAIPTNNKGRHAIGCV 176
Query: 81 WWLLAREVLRFRGTI-PREPKWDVVVDLFFYRDP 113
WW+LAREVLR RGTI RE WDV+VDL+FYRDP
Sbjct: 177 WWMLAREVLRLRGTIYNRETPWDVMVDLYFYRDP 210
Score = 44 (20.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAP-TESWNDTVVPSADLAPQSWAE 218
EAE EE+ +E + ++ V + P T W P+ A W++
Sbjct: 211 EAEAEEKVEEEKLPGVEEEGVAAIESGFPATGDWE--AAPAGFPATGEWSD 259
>UNIPROTKB|Q7RBT0 [details] [associations]
symbol:PY06059 "40S ribosomal protein SA" species:73239
"Plasmodium yoelii yoelii" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 HAMAP:MF_03015
HSSP:O29132 EMBL:AABL01002012 RefSeq:XP_726642.1
ProteinModelPortal:Q7RBT0 SMR:Q7RBT0 STRING:Q7RBT0 GeneID:3791982
KEGG:pyo:PY06059 EuPathDB:PlasmoDB:PY06059 Uniprot:Q7RBT0
Length = 263
Score = 353 (129.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 66/127 (51%), Positives = 82/127 (64%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
F EPRLL+VTDP TD Q + E+AY NIPVIA C+++SPL VDIAIPCNNK SI LM+
Sbjct: 115 FIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMY 174
Query: 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFAAH 141
WLLA+EVL +GTIPR WDV+VD+F +RDP +++A
Sbjct: 175 WLLAQEVLYLKGTIPRSQAWDVMVDMFLWRDPEQFELKNLANEEATPTAPHLADNQYATE 234
Query: 142 APTESWN 148
AP + WN
Sbjct: 235 APYDDWN 241
Score = 41 (19.5 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 239 DDWTTPVGADDW 250
++W P+ D+W
Sbjct: 252 EEWKNPITVDEW 263
>TAIR|locus:2193997 [details] [associations]
symbol:P40 "AT1G72370" species:3702 "Arabidopsis
thaliana" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0006412 "translation" evidence=IEA;ISS;IBA] [GO:0015935 "small
ribosomal subunit" evidence=IEA;IDA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0042256 "mature ribosome assembly" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0006970 "response to osmotic stress" evidence=IEP] [GO:0009651
"response to salt stress" evidence=IEP;RCA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] [GO:0046686 "response to cadmium
ion" evidence=RCA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 EnsemblPlants:AT1G72370.1 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0006412 GO:GO:0009651 GO:GO:0003735
GO:GO:0000028 EMBL:AC016529 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
EMBL:X69056 EMBL:U01955 EMBL:X89366 EMBL:Y10379 EMBL:AY054211
EMBL:AY058885 EMBL:AY065096 EMBL:AY079041 EMBL:AY114561
EMBL:AY136324 EMBL:BT000421 EMBL:AY087976 IPI:IPI00532111
PIR:F96747 PIR:S71247 RefSeq:NP_177381.1 UniGene:At.22576
UniGene:At.35111 UniGene:At.70162 ProteinModelPortal:Q08682
SMR:Q08682 IntAct:Q08682 STRING:Q08682 PaxDb:Q08682 PRIDE:Q08682
ProMEX:Q08682 GeneID:843569 KEGG:ath:AT1G72370 GeneFarm:5044
TAIR:At1g72370 HOGENOM:HOG000232073 InParanoid:Q08682 KO:K02998
OMA:ENVNFQM PhylomeDB:Q08682 ProtClustDB:CLSN2912707
Genevestigator:Q08682 HAMAP:MF_03015 Uniprot:Q08682
Length = 298
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 85/191 (44%), Positives = 105/191 (54%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q +F EPRLL++TDP TDHQPI E A NIP+IAFC+T+SP+RFVDI IP NNK
Sbjct: 112 FTN-QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNK 170
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIAD 132
HSIG ++WLLAR VL+ RGTI KWDV+VDLFFYR+P
Sbjct: 171 GKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGA 230
Query: 133 KPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEF 192
PA E+ + W I + G + A + +SAAA AD +
Sbjct: 231 LPAPEYGM-VGGDQWTTAQIPDAAWPGEGQAPISAAPAAA---SWSDSAAAPADGGWEAA 286
Query: 193 A--AHAPTESW 201
A + AP W
Sbjct: 287 APPSGAPAAGW 297
>ASPGD|ASPL0000040942 [details] [associations]
symbol:AN3172 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=IEA] [GO:0006407 "rRNA export from nucleus" evidence=IEA]
[GO:0002181 "cytoplasmic translation" evidence=IEA] [GO:0000461
"endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 EMBL:BN001306
EMBL:AACD01000051 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 OrthoDB:EOG4KH646 HSSP:O29132 RefSeq:XP_660776.1
STRING:Q5B8F8 PRIDE:Q5B8F8 EnsemblFungi:CADANIAT00009898
GeneID:2874532 KEGG:ani:AN3172.2 Uniprot:Q5B8F8
Length = 293
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 87/181 (48%), Positives = 104/181 (57%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL+VVTDP TD Q I EA+YVNIPVIA C+T+SP FVD+AIP NNK H+IGL+
Sbjct: 117 SFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLI 176
Query: 81 WWLLAREVLRFRGTIP-REPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFA 139
WWLLAREVLR RGT+ RE WDVVVDL+FYRDP D A
Sbjct: 177 WWLLAREVLRLRGTLANREVDWDVVVDLYFYRDPEAEENKEVAEEKVASA-EDVGAGAIE 235
Query: 140 AHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA-PT 198
+ ESW+ + G F + A E G + AA+ A P E A A P
Sbjct: 236 SGFAAESWD-------AQGAAAPAAFAAAGATSWEADGGDWAASSAPAPGGENWAEAQPA 288
Query: 199 E 199
E
Sbjct: 289 E 289
>UNIPROTKB|Q5B8F8 [details] [associations]
symbol:rps0 "40S ribosomal protein S0" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
OrthoDB:EOG4KH646 HSSP:O29132 RefSeq:XP_660776.1 STRING:Q5B8F8
PRIDE:Q5B8F8 EnsemblFungi:CADANIAT00009898 GeneID:2874532
KEGG:ani:AN3172.2 Uniprot:Q5B8F8
Length = 293
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 87/181 (48%), Positives = 104/181 (57%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL+VVTDP TD Q I EA+YVNIPVIA C+T+SP FVD+AIP NNK H+IGL+
Sbjct: 117 SFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLI 176
Query: 81 WWLLAREVLRFRGTIP-REPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFA 139
WWLLAREVLR RGT+ RE WDVVVDL+FYRDP D A
Sbjct: 177 WWLLAREVLRLRGTLANREVDWDVVVDLYFYRDPEAEENKEVAEEKVASA-EDVGAGAIE 235
Query: 140 AHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHA-PT 198
+ ESW+ + G F + A E G + AA+ A P E A A P
Sbjct: 236 SGFAAESWD-------AQGAAAPAAFAAAGATSWEADGGDWAASSAPAPGGENWAEAQPA 288
Query: 199 E 199
E
Sbjct: 289 E 289
>GENEDB_PFALCIPARUM|PF10_0264 [details] [associations]
symbol:PF10_0264 "40S ribosomal protein,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 EMBL:AE014185 GO:GO:0022627
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 HSSP:O29132 ProtClustDB:PTZ00254
RefSeq:XP_001347548.1 ProteinModelPortal:Q8IJD4 SMR:Q8IJD4
IntAct:Q8IJD4 MINT:MINT-1717658 PRIDE:Q8IJD4
EnsemblProtists:PF10_0264:mRNA GeneID:810421 KEGG:pfa:PF10_0264
EuPathDB:PlasmoDB:PF3D7_1026800 Uniprot:Q8IJD4
Length = 263
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 64/126 (50%), Positives = 81/126 (64%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
F EPRLL+VTDP TD Q + E+AY NIPVIA C+++SPL VDIAIPCNNK SI LM+
Sbjct: 115 FTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMY 174
Query: 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFAAH 141
WLLA+EVL +G IPR W+V+VD+F +RDP +++AA
Sbjct: 175 WLLAQEVLYLKGVIPRSEPWNVMVDMFLWRDPEQFELKNLANEENTPTAPHLIENQYAAE 234
Query: 142 APTESW 147
AP + W
Sbjct: 235 APYDEW 240
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 239 DDWTTPVGADDW 250
+DW P+ A++W
Sbjct: 252 EDWKNPIAAEEW 263
>UNIPROTKB|Q8IJD4 [details] [associations]
symbol:PF10_0264 "40S ribosomal protein SA" species:36329
"Plasmodium falciparum 3D7" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 EMBL:AE014185
GO:GO:0022627 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 HSSP:O29132 ProtClustDB:PTZ00254
RefSeq:XP_001347548.1 ProteinModelPortal:Q8IJD4 SMR:Q8IJD4
IntAct:Q8IJD4 MINT:MINT-1717658 PRIDE:Q8IJD4
EnsemblProtists:PF10_0264:mRNA GeneID:810421 KEGG:pfa:PF10_0264
EuPathDB:PlasmoDB:PF3D7_1026800 Uniprot:Q8IJD4
Length = 263
Score = 341 (125.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 64/126 (50%), Positives = 81/126 (64%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
F EPRLL+VTDP TD Q + E+AY NIPVIA C+++SPL VDIAIPCNNK SI LM+
Sbjct: 115 FTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMY 174
Query: 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFAAH 141
WLLA+EVL +G IPR W+V+VD+F +RDP +++AA
Sbjct: 175 WLLAQEVLYLKGVIPRSEPWNVMVDMFLWRDPEQFELKNLANEENTPTAPHLIENQYAAE 234
Query: 142 APTESW 147
AP + W
Sbjct: 235 APYDEW 240
Score = 47 (21.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 239 DDWTTPVGADDW 250
+DW P+ A++W
Sbjct: 252 EDWKNPIAAEEW 263
>WB|WBGene00004469 [details] [associations]
symbol:rps-0 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0006412 GO:GO:0018996
GO:GO:0040035 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:Z37983 PIR:T18742
RefSeq:NP_497978.1 ProteinModelPortal:P46769 SMR:P46769
DIP:DIP-26217N IntAct:P46769 MINT:MINT-1037948 STRING:P46769
World-2DPAGE:0020:P46769 PaxDb:P46769 EnsemblMetazoa:B0393.1.1
EnsemblMetazoa:B0393.1.2 GeneID:175628 KEGG:cel:CELE_B0393.1
UCSC:B0393.1.1 CTD:175628 WormBase:B0393.1 InParanoid:P46769
OMA:QAGADWT NextBio:888964 Uniprot:P46769
Length = 276
Score = 332 (121.9 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 59/102 (57%), Positives = 77/102 (75%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q Q F+EPRLLV++DP DHQ +TEA+YV +PVI+F NTESPL+ +DI +PCNNK S
Sbjct: 111 QIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERS 170
Query: 77 IGLMWWLLAREVLRFRGTIPREPKW-----DVVVDLFFYRDP 113
IGLMWW+LARE+L RG I R+ + +++ DL+FYRDP
Sbjct: 171 IGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDP 212
Score = 39 (18.8 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 168 SEAEKEEQAGKESAAAIADKPVDEFAAHAPTES-W 201
++ K + E+A A+ E A+APT+S W
Sbjct: 242 TQGGKVDDWAAETATWTAETKTTEEWANAPTQSNW 276
>UNIPROTKB|P46769 [details] [associations]
symbol:rps-0 "40S ribosomal protein SA" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0006407 "rRNA export
from nucleus" evidence=IBA] [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IBA] [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0006412 GO:GO:0018996
GO:GO:0040035 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:Z37983 PIR:T18742
RefSeq:NP_497978.1 ProteinModelPortal:P46769 SMR:P46769
DIP:DIP-26217N IntAct:P46769 MINT:MINT-1037948 STRING:P46769
World-2DPAGE:0020:P46769 PaxDb:P46769 EnsemblMetazoa:B0393.1.1
EnsemblMetazoa:B0393.1.2 GeneID:175628 KEGG:cel:CELE_B0393.1
UCSC:B0393.1.1 CTD:175628 WormBase:B0393.1 InParanoid:P46769
OMA:QAGADWT NextBio:888964 Uniprot:P46769
Length = 276
Score = 332 (121.9 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 59/102 (57%), Positives = 77/102 (75%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q Q F+EPRLLV++DP DHQ +TEA+YV +PVI+F NTESPL+ +DI +PCNNK S
Sbjct: 111 QIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERS 170
Query: 77 IGLMWWLLAREVLRFRGTIPREPKW-----DVVVDLFFYRDP 113
IGLMWW+LARE+L RG I R+ + +++ DL+FYRDP
Sbjct: 171 IGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDP 212
Score = 39 (18.8 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 168 SEAEKEEQAGKESAAAIADKPVDEFAAHAPTES-W 201
++ K + E+A A+ E A+APT+S W
Sbjct: 242 TQGGKVDDWAAETATWTAETKTTEEWANAPTQSNW 276
>POMBASE|SPBC685.06 [details] [associations]
symbol:rps001 "40S ribosomal protein S0A (p40)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006412 "translation" evidence=IC] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=TAS] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IMP] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 PomBase:SPBC685.06 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0006364 GO:GO:0042274 GO:GO:0022627 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015 PIR:T40637
RefSeq:NP_596140.1 ProteinModelPortal:Q9Y7L8 SMR:Q9Y7L8
STRING:Q9Y7L8 PRIDE:Q9Y7L8 EnsemblFungi:SPBC685.06.1 GeneID:2541144
KEGG:spo:SPBC685.06 OMA:ANCHIGS OrthoDB:EOG4KH646 NextBio:20802257
Uniprot:Q9Y7L8
Length = 292
Score = 328 (120.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 66/124 (53%), Positives = 79/124 (63%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
+REPRL+VVTDP D Q I EA++VNIPVIA C+T+S L VDIAIP NNK SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFAAH 141
+LLAREVLR RGT+ R WDV+ DL+FYRDP + +E A
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAAAAAEEAQVEEAVAA 237
Query: 142 APTE 145
A E
Sbjct: 238 AEFE 241
Score = 41 (19.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 246 GADDWGQDWSNSTSQW 261
GA DW + TS W
Sbjct: 270 GAGDWNTTGAAQTSDW 285
>CGD|CAL0000370 [details] [associations]
symbol:YST1 species:5476 "Candida albicans" [GO:0016020
"membrane" evidence=IDA] [GO:0005840 "ribosome" evidence=IGI;IDA]
[GO:0006412 "translation" evidence=IGI] [GO:0003735 "structural
constituent of ribosome" evidence=IGI] [GO:0016021 "integral to
membrane" evidence=ISS] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IEA] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IEA] [GO:0006407 "rRNA export from nucleus"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 CGD:CAL0000370 GO:GO:0016021
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000098
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 HAMAP:MF_03015
EMBL:Y11434 EMBL:AJ251858 RefSeq:XP_714681.1
ProteinModelPortal:O42817 SMR:O42817 STRING:O42817 GeneID:3643678
KEGG:cal:CaO19.6975 Uniprot:O42817
Length = 261
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 63/94 (67%), Positives = 76/94 (80%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL+VVTDP TD Q I E++YVNIPVIA + +SP +VD+AIPCNNK HSIGL+
Sbjct: 114 SFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLI 173
Query: 81 WWLLAREVLRFRGTIP-REPKWDVVVDLFFYRDP 113
WWLLAREVLR RG IP R +W V+ DL+FYRDP
Sbjct: 174 WWLLAREVLRLRGIIPDRTTEWSVMPDLYFYRDP 207
>UNIPROTKB|O42817 [details] [associations]
symbol:RPS0 "40S ribosomal protein S0" species:237561
"Candida albicans SC5314" [GO:0003735 "structural constituent of
ribosome" evidence=IGI] [GO:0005840 "ribosome" evidence=IGI;IDA]
[GO:0006412 "translation" evidence=IGI] [GO:0016020 "membrane"
evidence=IDA] [GO:0016021 "integral to membrane" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
CGD:CAL0000370 GO:GO:0016021 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AACQ01000098 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
KO:K02998 HAMAP:MF_03015 EMBL:Y11434 EMBL:AJ251858
RefSeq:XP_714681.1 ProteinModelPortal:O42817 SMR:O42817
STRING:O42817 GeneID:3643678 KEGG:cal:CaO19.6975 Uniprot:O42817
Length = 261
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 63/94 (67%), Positives = 76/94 (80%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL+VVTDP TD Q I E++YVNIPVIA + +SP +VD+AIPCNNK HSIGL+
Sbjct: 114 SFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLI 173
Query: 81 WWLLAREVLRFRGTIP-REPKWDVVVDLFFYRDP 113
WWLLAREVLR RG IP R +W V+ DL+FYRDP
Sbjct: 174 WWLLAREVLRLRGIIPDRTTEWSVMPDLYFYRDP 207
>DICTYBASE|DDB_G0270316 [details] [associations]
symbol:rpsA "40S ribosomal protein SA" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0009617 "response to bacterium" evidence=IEP]
[GO:0015935 "small ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA;IBA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IBA] [GO:0030686
"90S preribosome" evidence=IBA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IBA] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IBA] [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 dictyBase:DDB_G0270316
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0009617 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 HAMAP:MF_03015
OMA:FKEPRVI HSSP:O29132 RefSeq:XP_646700.1
ProteinModelPortal:Q55BY1 SMR:Q55BY1 STRING:Q55BY1
EnsemblProtists:DDB0230016 GeneID:8617674 KEGG:ddi:DDB_G0270316
ProtClustDB:PTZ00254 Uniprot:Q55BY1
Length = 245
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 71/136 (52%), Positives = 81/136 (59%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q+ F EPRLL+V DP D QP+ EA+YVNIP IA C+T S L VDIAIPCNN+
Sbjct: 108 FTN-QIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNR 166
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIAD 132
+SI LM+WLLAREVL RGTIPR W V VDLF YRD +A
Sbjct: 167 GKNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYRDTDEEPEKEKTAAVAAAPVAA 226
Query: 133 KPADEFAAHAPTESWN 148
A EF P W+
Sbjct: 227 VEAVEFTQQ-PIAEWS 241
>UNIPROTKB|A8IB25 [details] [associations]
symbol:CHLREDRAFT_126059 "40S ribosomal protein SA"
species:3055 "Chlamydomonas reinhardtii" [GO:0000028 "ribosomal
small subunit assembly" evidence=ISS] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0009507
GO:GO:0006412 GO:GO:0009651 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0042256 GO:GO:0022627
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 EMBL:DS496115 RefSeq:XP_001702485.1 UniGene:Cre.2557
ProteinModelPortal:A8IB25 SMR:A8IB25 STRING:A8IB25 PRIDE:A8IB25
EnsemblPlants:EDP06264 GeneID:5728044 KEGG:cre:CHLREDRAFT_126059
eggNOG:NOG251336 ProtClustDB:CLSN2923915 Uniprot:A8IB25
Length = 279
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 64/111 (57%), Positives = 80/111 (72%)
Query: 3 SLSSRTGLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRF 62
S++ R F N Q Q AF EPRLL++TDP TDHQP+ E++Y+NIP IAFC+T+SPL
Sbjct: 93 SMAGRHTPGTFTN-QIQKAFEEPRLLILTDPRTDHQPVKESSYMNIPTIAFCDTDSPLTH 151
Query: 63 VDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
VD+AIP NNK HSIG++++LLAR VL R I W V VDLFFYR+P
Sbjct: 152 VDVAIPANNKGKHSIGVLYFLLARMVLEMRDQINVTNPWSVPVDLFFYREP 202
>UNIPROTKB|Q75CQ9 [details] [associations]
symbol:RPS0 "40S ribosomal protein S0" species:284811
"Ashbya gossypii ATCC 10895" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 EMBL:AE016816 GenomeReviews:AE016816_GR
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
OrthoDB:EOG4KH646 RefSeq:NP_983264.1 HSSP:O29132
ProteinModelPortal:Q75CQ9 SMR:Q75CQ9 STRING:Q75CQ9 PRIDE:Q75CQ9
EnsemblFungi:AAS51088 GeneID:4619384 KEGG:ago:AGOS_ACL140C
PhylomeDB:Q75CQ9 Uniprot:Q75CQ9
Length = 253
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/127 (50%), Positives = 83/127 (65%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL++VTDP +D Q I EA+YVNIPVIA + ESP +VD+AIPCNN+ HSIGL+
Sbjct: 114 SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLESPSEYVDVAIPCNNRGKHSIGLI 173
Query: 81 WWLLAREVLRFRGT-IPREPKWDVVVDLFFYRDPXXXXXXXXXXXXXXXXIADKPADEFA 139
W+LLAREVLR RG + R W ++ DL+FYRDP D+ +E A
Sbjct: 174 WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEIEQQAAEEAAAGEE-DDEAKEEVA 232
Query: 140 AHAPTES 146
A TE+
Sbjct: 233 AEEQTEA 239
>UNIPROTKB|D4A495 [details] [associations]
symbol:D4A495 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA]
InterPro:IPR005707 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 IPI:IPI00779109
Ensembl:ENSRNOT00000057337 Uniprot:D4A495
Length = 244
Score = 266 (98.7 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 58/101 (57%), Positives = 68/101 (67%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q AFRE +LLVVTDP DHQP+ EA+YVN V+ C +VDIAIPCNNK
Sbjct: 82 FTN-QIQTAFRESQLLVVTDPRADHQPLMEASYVNYCVLPLC-------YVDIAIPCNNK 133
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
HS GLMWW+LA +VLR P W+V+ DL+FYRDP
Sbjct: 134 GAHS-GLMWWMLAWDVLRM---YP----WEVMPDLYFYRDP 166
Score = 45 (20.9 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 239 DDWTTPVGADDWGQDWSNSTSQW 261
+DW +DW + T++W
Sbjct: 214 EDWNAQSATEDWSAAPTVQTTEW 236
Score = 43 (20.2 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 134 PADEFAAHAPTESWNDTPILSVS 156
P++++ A + TE W+ P + +
Sbjct: 212 PSEDWNAQSATEDWSAAPTVQTT 234
Score = 41 (19.5 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 178 KESAAAIADKPVDEFAAHAPTESWN 202
+E+A I P +++ A + TE W+
Sbjct: 202 REAANWIQQFPSEDWNAQSATEDWS 226
Score = 36 (17.7 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 169 EAEKEEQAGKESA 181
+ EKEEQA E A
Sbjct: 168 DIEKEEQAAVERA 180
>SGD|S000003446 [details] [associations]
symbol:RPS0A "Ribosomal 40S subunit protein S0A" species:4932
"Saccharomyces cerevisiae" [GO:0006412 "translation" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;IDA] [GO:0002181 "cytoplasmic
translation" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006407 "rRNA export from nucleus" evidence=IGI] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000461 "endonucleolytic
cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000028 "ribosomal small subunit
assembly" evidence=IMP] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IDA] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
SGD:S000003446 EMBL:BK006941 GO:GO:0003735 GO:GO:0002181
GO:GO:0000028 GO:GO:0030686 GO:GO:0000447 PDB:1S1H PDBsum:1S1H
GO:GO:0022627 PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G
PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 PDB:1K5X
PDBsum:1K5X GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015 OrthoDB:EOG4KH646
EMBL:M88277 EMBL:Z72999 PIR:S42143 RefSeq:NP_011730.1
ProteinModelPortal:P32905 SMR:P32905 DIP:DIP-5553N IntAct:P32905
MINT:MINT-562708 STRING:P32905 SWISS-2DPAGE:P32905
PeptideAtlas:P32905 EnsemblFungi:YGR214W GeneID:853128
KEGG:sce:YGR214W GeneTree:ENSGT00390000015036 OMA:PYGFKPV
EvolutionaryTrace:P32905 NextBio:973178 Genevestigator:P32905
GermOnline:YGR214W Uniprot:P32905
Length = 252
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 58/94 (61%), Positives = 74/94 (78%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL++VTDP +D Q I EA+YVNIPVIA + +SP FVD+AIPCNN+ HSIGL+
Sbjct: 114 SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLI 173
Query: 81 WWLLAREVLRFRGT-IPREPKWDVVVDLFFYRDP 113
W+LLAREVLR RG + R W ++ DL+FYRDP
Sbjct: 174 WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDP 207
>POMBASE|SPAPJ698.02c [details] [associations]
symbol:rps002 "40S ribosomal protein S0B" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006412 "translation" evidence=IC] [GO:0022627
"cytosolic small ribosomal subunit" evidence=TAS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IMP]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
PomBase:SPAPJ698.02c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 GO:GO:0006364 GO:GO:0042274
GO:GO:0022627 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 OrthoDB:EOG4KH646 RefSeq:NP_594413.1
ProteinModelPortal:Q9P546 SMR:Q9P546 STRING:Q9P546 PRIDE:Q9P546
EnsemblFungi:SPAPJ698.02c.1 GeneID:2543293 KEGG:spo:SPAPJ698.02c
NextBio:20804311 Uniprot:Q9P546
Length = 287
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
+REPRL++VTDP D Q I EA++VNIPVIA C+T+S L VD+AIP NNK SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 82 WLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
+LLAREVLR RG I R W+V+ DL+FYRDP
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
>SGD|S000004038 [details] [associations]
symbol:RPS0B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0002181
"cytoplasmic translation" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0006407 "rRNA export from
nucleus" evidence=IGI] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA]
[GO:0030686 "90S preribosome" evidence=IBA] [GO:0000028 "ribosomal
small subunit assembly" evidence=IMP] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 SGD:S000004038 EMBL:BK006945
GO:GO:0003735 GO:GO:0002181 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 EMBL:X94607 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
HAMAP:MF_03015 OrthoDB:EOG4KH646 GeneTree:ENSGT00390000015036
EMBL:U33756 EMBL:Z73220 PIR:S59364 RefSeq:NP_013149.1
ProteinModelPortal:P46654 SMR:P46654 IntAct:P46654
MINT:MINT-2787456 STRING:P46654 PaxDb:P46654 PeptideAtlas:P46654
EnsemblFungi:YLR048W GeneID:850737 KEGG:sce:YLR048W OMA:FKEPRVI
NextBio:966843 Genevestigator:P46654 GermOnline:YLR048W
Uniprot:P46654
Length = 252
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 57/94 (60%), Positives = 73/94 (77%)
Query: 21 AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLM 80
+F+EPRL++VTDP D Q I EA+YVNIPVIA + +SP FVD+AIPCNN+ HSIGL+
Sbjct: 114 SFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLI 173
Query: 81 WWLLAREVLRFRGT-IPREPKWDVVVDLFFYRDP 113
W+LLAREVLR RG + R W ++ DL+FYR+P
Sbjct: 174 WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRNP 207
>TAIR|locus:2084988 [details] [associations]
symbol:RPSAb "AT3G04770" species:3702 "Arabidopsis
thaliana" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IEA;ISS;IBA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00963
EnsemblPlants:AT3G04770.1 GO:GO:0009507 EMBL:CP002686 GO:GO:0016020
GO:GO:0006412 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
KO:K02998 IPI:IPI00522617 RefSeq:NP_850515.1 UniGene:At.10372
ProteinModelPortal:F4J4W3 SMR:F4J4W3 PRIDE:F4J4W3 DNASU:819637
GeneID:819637 KEGG:ath:AT3G04770 OMA:RWICFST Uniprot:F4J4W3
Length = 332
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 60/94 (63%), Positives = 71/94 (75%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q Q +F EPRLL++TDP TDHQPI E A NIP IAFC+T+SP+ FVDI IP NNK
Sbjct: 113 FTN-QMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNK 171
Query: 73 SPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVD 106
HSIG ++WLLAR VL+ RGTI KWDV+V+
Sbjct: 172 GKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
>UNIPROTKB|F1M8B9 [details] [associations]
symbol:F1M8B9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 Pfam:PF00318 PRINTS:PR00395
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 IPI:IPI00390660
Ensembl:ENSRNOT00000032599 OMA:AMKLLAT Uniprot:F1M8B9
Length = 226
Score = 260 (96.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 54/96 (56%), Positives = 67/96 (69%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q +AFREP+LLVVTD DHQP+TEA+ V P++ NT+SPLR+VDIAI C +
Sbjct: 87 QIPSAFREPQLLVVTDSQADHQPLTEASSVCPPLLCV-NTDSPLRYVDIAIQCKKQGSSL 145
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRD 112
IG MWW+LA LR RGTI E W+V+ D +FYRD
Sbjct: 146 IGPMWWMLA--YLRLRGTISCEHPWEVLPD-YFYRD 178
Score = 50 (22.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 167 VSEAEKEEQAGKESAAAIAD------KPVDEFAAHAP-TESWND 203
+ E EKEEQA E A + P EF A P +W++
Sbjct: 179 LGEIEKEEQAAAEKAVTKKEFQGEWTAPAPEFTAAQPEVANWSE 222
>UNIPROTKB|E2RGM2 [details] [associations]
symbol:E2RGM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 Pfam:PF00318 GO:GO:0006412
GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313
PANTHER:PTHR11489 GeneTree:ENSGT00390000015036 EMBL:AAEX03018045
Ensembl:ENSCAFT00000020490 Uniprot:E2RGM2
Length = 232
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 3 SLSSRTGLFIFP-NL--QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESP 59
S ++R + FP N Q QAAF E LLVVT+P DHQ +TEA+YVN+ ++ C +SP
Sbjct: 45 SRATRIVVCFFPGNFTNQIQAAFWELSLLVVTNPRADHQ-LTEASYVNLSLL--CVIDSP 101
Query: 60 LRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXX 119
L VDIAI CN + HS+ L+WW++AREVL GTI E W+ + DL+FYRDP
Sbjct: 102 LHHVDIAISCN-RGAHSVSLVWWMMAREVLCMHGTISCEHPWEAMSDLYFYRDPEEIGEE 160
Query: 120 XXXXXXXXXXIADKPADEFAAHAP 143
++ DE+ A AP
Sbjct: 161 DQATAEMAMT-KEEFQDEWTAPAP 183
>UNIPROTKB|F1S1E3 [details] [associations]
symbol:F1S1E3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 Pfam:PF00318 PRINTS:PR00395 GO:GO:0006412
GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313
PANTHER:PTHR11489 GeneTree:ENSGT00390000015036 EMBL:CU695067
Ensembl:ENSSSCT00000022457 Uniprot:F1S1E3
Length = 283
Score = 224 (83.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 50/97 (51%), Positives = 63/97 (64%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q QAA P+L VVT P +DH+ +TEAA+VN P +A CNT+ PL +VDIAI NN+
Sbjct: 110 QIQAA---PKLRVVTGPRSDHKLLTEAAHVNPPTVALCNTDPPLCYVDIAILRNNR---- 162
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
GL W+L R VL GTI E + + DL+FYRDP
Sbjct: 163 -GLTQWMLGRVVLYMPGTISCEHSQEAMPDLYFYRDP 198
Score = 50 (22.7 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 21/63 (33%), Positives = 25/63 (39%)
Query: 169 EAEKEEQAG-----KESAAAIADKPVDEFAA--H--APTESWNDTVVPSADLAPQSWAEE 219
E EKEEQA KE P EF H A E + VP L P+ W +
Sbjct: 200 EIEKEEQAAEQVVTKEEFQGECMAPALEFTVTQHEMANWEGMQVSSVPLQKLPPEDWRTQ 259
Query: 220 SAS 222
A+
Sbjct: 260 PAT 262
>UNIPROTKB|P95993 [details] [associations]
symbol:rps2 "30S ribosomal protein S2" species:273057
"Sulfolobus solfataricus P2" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 InterPro:IPR023454 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
EMBL:AE006641 GenomeReviews:AE006641_GR GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 EMBL:Y08257 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 KO:K02967
GO:GO:0000461 OMA:YWILARE ProtClustDB:PRK04020 HAMAP:MF_00291_A
PANTHER:PTHR11489 PANTHER:PTHR11489:SF2 TIGRFAMs:TIGR01012
PIR:S75421 RefSeq:NP_341638.1 ProteinModelPortal:P95993 SMR:P95993
GeneID:1455319 KEGG:sso:SSO0067 HOGENOM:HOG000232072 Uniprot:P95993
Length = 231
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 43/97 (44%), Positives = 64/97 (65%)
Query: 9 GLFIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIP 68
G F P L + + EP++L+V+DP TD Q I EAA V IP++AF +T++ + ++D+ IP
Sbjct: 129 GTFTNPYL---STYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIP 185
Query: 69 CNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVV 105
NNK S+ L++W LAR++LR R IP P D+ V
Sbjct: 186 ANNKGRKSLALLYWALARQILRERRVIP--PDGDLAV 220
>UNIPROTKB|F1LT21 [details] [associations]
symbol:F1LT21 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA]
InterPro:IPR005707 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
IPI:IPI00390967 Ensembl:ENSRNOT00000029955 Uniprot:F1LT21
Length = 206
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 46/97 (47%), Positives = 60/97 (61%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q QAAFREP LLV T P HQ + +A+Y N+P A CN S L +V IA P NN + HS
Sbjct: 62 QIQAAFREPPLLVATGPRAGHQLLIKASYANLPT-ALCNRNSVLHYVGIATPGNNGA-HS 119
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
+ L+WW+L EVL T+ W+V+ +L+ RDP
Sbjct: 120 MSLIWWILTWEVLCM--TVFCGHPWEVMPNLYLSRDP 154
>UNIPROTKB|J9P9K4 [details] [associations]
symbol:J9P9K4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PROSITE:PS00962 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 EMBL:AAEX03008008
Ensembl:ENSCAFT00000043626 Uniprot:J9P9K4
Length = 268
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 54/137 (39%), Positives = 72/137 (52%)
Query: 9 GLFIFPNL--QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 66
G FI N Q QAAF E RLLVVTDP P+ E YV++P IA CN++SPL +
Sbjct: 97 GCFISGNFTSQIQAAFWELRLLVVTDP-----PLIEVFYVHLPTIALCNSDSPLWTL--- 148
Query: 67 IPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPXXXXXXXXXXXXX 126
+P NK S+GL+W +L + GTI E W+V+ L+F RDP
Sbjct: 149 LP-RNKGAGSMGLIW------MLAWPGTISCEHPWEVMPKLYFCRDPEEIENEEQVAAEK 201
Query: 127 XXXIADKPADEFAAHAP 143
+ ++ DE+ A AP
Sbjct: 202 VVTM-EEFQDEWTAPAP 217
>UNIPROTKB|I3LIK7 [details] [associations]
symbol:I3LIK7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 PRINTS:PR00395 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 EMBL:FP325204
Ensembl:ENSSSCT00000031046 Uniprot:I3LIK7
Length = 248
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 43/97 (44%), Positives = 57/97 (58%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
Q QA F+E RLL + P + +YVN+ A NT+S L +DIAIPCN K HS
Sbjct: 106 QIQAGFQEQRLLGLLIPGLT----SSLSYVNLLTFALSNTDSTLCSMDIAIPCN-KEAHS 160
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDP 113
+GLMWW+ A EVL + RE +V+ L+F+ DP
Sbjct: 161 VGLMWWMPA-EVLPLCDILSREHPQEVMPHLYFHTDP 196
>UNIPROTKB|Q8TT39 [details] [associations]
symbol:rps2 "30S ribosomal protein S2" species:188937
"Methanosarcina acetivorans C2A" [GO:0000028 "ribosomal small
subunit assembly" evidence=ISS] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 InterPro:IPR023454 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0000028 GO:GO:0030686 GO:GO:0000447 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 KO:K02967
GO:GO:0000461 RefSeq:NP_615564.1 ProteinModelPortal:Q8TT39
SMR:Q8TT39 GeneID:1472492 KEGG:mac:MA0600 OMA:YWILARE
ProtClustDB:PRK04020 BioCyc:MACE188937:GI2O-667-MONOMER
HAMAP:MF_00291_A PANTHER:PTHR11489 PANTHER:PTHR11489:SF2
TIGRFAMs:TIGR01012 Uniprot:Q8TT39
Length = 225
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
F EP +++VTDP D Q + EA+ + +PV+A C+T + VD+ IP NNK ++ L++
Sbjct: 140 FFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVY 199
Query: 82 WLLAREVLRFRGT 94
WLLAREV R T
Sbjct: 200 WLLAREVSRLNDT 212
>UNIPROTKB|F1LVE0 [details] [associations]
symbol:F1LVE0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA]
InterPro:IPR005707 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
PANTHER:PTHR11489 OMA:PATIRMR IPI:IPI00767893
Ensembl:ENSRNOT00000058938 Uniprot:F1LVE0
Length = 130
Score = 101 (40.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 76 SIGLMW-WLL-AREVLRFRGTIPREPKWDVVVDLFFYRDP 113
S+ W WL+ +R RGTI RE W+V+ DL+FYRDP
Sbjct: 3 SLKAAWIWLVKVPATIRMRGTISREHPWEVMPDLYFYRDP 42
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 22/94 (23%), Positives = 36/94 (38%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIXXXXX 228
E EKEEQA E A ++ E+ A AP + ++A S + S+
Sbjct: 44 EIEKEEQAAPEKAVT-KEEFQGEWTAPAP-----EFTAAQPEVADGSEGVQVPSMPIQQF 97
Query: 229 XXXXXXXX-XXDDWTTPVGADDWGQDWSNSTSQW 261
+DW+ A +W +T++W
Sbjct: 98 PTEDWSAQPATEDWSAAPTAQ--ATEWVGATTEW 129
Score = 42 (19.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 134 PADEFAAHAPTESWNDTP 151
P ++++A TE W+ P
Sbjct: 98 PTEDWSAQPATEDWSAAP 115
>RGD|1560987 [details] [associations]
symbol:RGD1560987 "similar to 40S ribosomal protein SA (p40)
(34/67 kDa laminin receptor)" species:10116 "Rattus norvegicus"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 Pfam:PF00318 PRINTS:PR00395 RGD:1560987
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 GeneTree:ENSGT00390000015036
IPI:IPI00394632 Ensembl:ENSRNOT00000032787 Uniprot:F1M3Q6
Length = 199
Score = 129 (50.5 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 35/79 (44%), Positives = 45/79 (56%)
Query: 8 TGLFIFPNL---QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVD 64
TG F P + Q QAA REP+LLVVTDP H + N P + T+ PL +VD
Sbjct: 100 TGCFT-PGIVTSQIQAASREPQLLVVTDPRAPHIGLNS----NQPTMVLWITDFPLCYVD 154
Query: 65 IAIPCNNKSPHSIGLMWWL 83
IA+ NK HS+ LM++L
Sbjct: 155 IAL---NKGAHSVDLMYYL 170
Score = 36 (17.7 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 169 EAEKEEQAGKESA 181
E +KEEQA E A
Sbjct: 186 EFQKEEQAAVEKA 198
>UNIPROTKB|I3L6M5 [details] [associations]
symbol:I3L6M5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005707
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 GeneTree:ENSGT00390000015036
EMBL:FP312783 EMBL:FP476092 Ensembl:ENSSSCT00000030758
Ensembl:ENSSSCT00000032133 Uniprot:I3L6M5
Length = 270
Score = 116 (45.9 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 13 FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 72
F N Q QAAF EPR L P DHQP+T + V+ P A C+ P V + P +
Sbjct: 106 FTN-QVQAAFWEPRPL----P-ADHQPLTGTS-VHPPTGALCDKPLPCA-VWLLPPGQQQ 157
Query: 73 SPHSIGLMWWLLAREVLR 90
+GL WW++ REVLR
Sbjct: 158 GSSPVGLTWWMVPREVLR 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 261 230 0.00083 113 3 11 22 0.42 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 623 (66 KB)
Total size of DFA: 225 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.43u 0.08s 18.51t Elapsed: 00:00:03
Total cpu time: 18.44u 0.08s 18.52t Elapsed: 00:00:03
Start: Thu Aug 15 11:10:44 2013 End: Thu Aug 15 11:10:47 2013