RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9845
(261 letters)
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 213 bits (544), Expect = 3e-69
Identities = 86/150 (57%), Positives = 103/150 (68%), Gaps = 6/150 (4%)
Query: 5 SSRTGLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR 61
S+ G F F N Q Q F EPRLL+VTDP TDHQ I EA+YVNIPVIA C+T+SPL
Sbjct: 97 SAIAGRFTPGTFTN-QIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLE 155
Query: 62 FVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQ 121
+VDIAIPCNN+ SI LM+WLLAREVLR RGT+PR+ +WDV+VDLFF+RDPEEAE++E+
Sbjct: 156 YVDIAIPCNNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEE 215
Query: 122 AGKESAAAIADKPADEFAAHAPTESWNDTP 151
A E+A A E W
Sbjct: 216 AAAETAGVEDAAAAAA--EAEEGEEWVAAA 243
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal).
This model describes the ribosomal protein of the
cytosol and of Archaea, homologous to S2 of bacteria. It
is designated typically as Sa in eukaryotes and Sa or S2
in the archaea. TIGR01011 describes the related protein
of organelles and bacteria [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 196
Score = 170 bits (433), Expect = 4e-53
Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 4/108 (3%)
Query: 8 TGLFI---FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVD 64
G F F N Q +FREP ++VVTDP DHQ + EA+ V IP++A C+T++PLR+VD
Sbjct: 90 AGRFTPGTFTN-PMQKSFREPEVVVVTDPRADHQAVKEASEVGIPIVALCDTDNPLRYVD 148
Query: 65 IAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRD 112
+ IP NNK S+ L++WLLARE+LR RGTI + KWDV+V+LFFYRD
Sbjct: 149 LVIPTNNKGRRSLALIYWLLAREILRMRGTISPDQKWDVMVELFFYRD 196
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 123 bits (312), Expect = 5e-35
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
FR P L++V DP +HQ I EA+ + IPVIA +T +D IP N+ S SI L+
Sbjct: 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALIL 184
Query: 82 WLLAREVLR 90
WLLAR +L
Sbjct: 185 WLLARAILE 193
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional.
Length = 204
Score = 116 bits (293), Expect = 5e-32
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 6 SRTGLFI-----FPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPL 60
+ TG FI P+L+ + EP ++VVTDP D Q + EA V IPV+A C+T++
Sbjct: 94 AITGRFIPGTLTNPSLKG---YIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150
Query: 61 RFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLF 108
VD+ IP NNK ++ L++WLLARE+LR RG I + V V+ F
Sbjct: 151 SNVDLVIPTNNKGRKALALVYWLLAREILRERGEIKPDEDLPVPVEDF 198
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 116 bits (292), Expect = 6e-32
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82
+ P L++V DP+ +H I EA+ + IPVIA +T +D IP N+ S SI L+ W
Sbjct: 136 KLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDTNCDPDLIDYPIPGNDDSIRSIALILW 195
Query: 83 LLAREVLRFR 92
LLAR +L R
Sbjct: 196 LLARAILEGR 205
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 114 bits (288), Expect = 8e-31
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 23 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82
P +L V DP + + EA + IPV+A +T VD IP N+ + SI L++W
Sbjct: 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYW 214
Query: 83 LLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAG 123
LLAR +L RG E + + D E KEE A
Sbjct: 215 LLARAILEGRGGALDEEEAAIEEDEEV---EEFEAKEEAAE 252
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 58.1 bits (141), Expect = 4e-10
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P LL V DP + + EA + IPV+A +T VD IP N+ + SI L+ L+
Sbjct: 156 PDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLI 215
Query: 85 AREVLRFRG 93
A VL +
Sbjct: 216 ADAVLEGKQ 224
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 55.9 bits (136), Expect = 3e-09
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P L V DP+ +H + EA + IPV+A +T VD IP N+ + SI L +
Sbjct: 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKI 217
Query: 85 AREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAA 129
A +L R + + + EE E+EE+ +E+ A
Sbjct: 218 ADAILEGRQ----GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion
protein; Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.022
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P LL V D + + I EA + IPV A +T + +P N+ + +I L L+
Sbjct: 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLI 212
Query: 85 AREVL 89
AR +
Sbjct: 213 ARAAI 217
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2.
Length = 230
Score = 34.1 bits (79), Expect = 0.053
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGL 79
P ++++ D ++ + E + IP I+ +T DI IP N+ + SI L
Sbjct: 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKL 216
>gnl|CDD|227493 COG5164, SPT5, Transcription elongation factor [Transcription].
Length = 607
Score = 34.2 bits (78), Expect = 0.060
Identities = 21/123 (17%), Positives = 30/123 (24%), Gaps = 29/123 (23%)
Query: 134 PADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFA 193
A + A + +E P W CV + EK+ G +
Sbjct: 508 TAWKGQATSASEISFVQP--------RWNNLVCVLDGEKKGTCGILNGI----------- 548
Query: 194 AHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPVGADDWGQD 253
W TV+ S + W S Y A W +
Sbjct: 549 ----NGDWGGTVIRSTKGSVVHWPMNDNSKKIYDGGASAWGNQ------DDGNRSAWQGN 598
Query: 254 WSN 256
SN
Sbjct: 599 KSN 601
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 31.5 bits (72), Expect = 0.55
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 175 QAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAA 234
+ + P + P + + P A A A P APAP AA
Sbjct: 436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP-APAAAPEPTAAPAPAPPAAPAPAAAP 494
Query: 235 APVADDWTTPVGADD 249
A A P GADD
Sbjct: 495 AAPAAP-AAPAGADD 508
Score = 31.1 bits (71), Expect = 0.65
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 173 EEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQA 232
E A A + A ++ + + AP + A APA A
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697
Query: 233 AAAPVADDWTTPVGA---DDWGQDWSNSTSQW 261
A P TP D Q +
Sbjct: 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGAS 729
Score = 29.2 bits (66), Expect = 2.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 205 VVPSADLAPQSWAEES------ASIPQYAPAPQAAAAPVADDWTTPVGA 247
P+A AP + A + A+ PQ APAP A AP + P G
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
Score = 27.6 bits (62), Expect = 8.7
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 167 VSEAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQY 226
+ A A + A A A P A + + + + A P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAP-----APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472
Query: 227 APAPQAAAAPVADDWTTPVGA 247
AP P AA AP P A
Sbjct: 473 APEPTAAPAPAPPAAPAPAAA 493
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 30.9 bits (70), Expect = 0.72
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 192 FAAHAPTESWNDTVVPSADLAPQSWAEESASIP 224
F A+ PTE+ V+P A LAP+ E +AS+P
Sbjct: 2478 FNAYGPTET---VVMPLACLAPEQLEEGAASVP 2507
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 30.7 bits (70), Expect = 0.79
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 102 DVVVDLFFYRDPEEAEKEEQAGK 124
D+V DL Y +P+E ++E+ K
Sbjct: 60 DIVTDLLLYVEPKEKSRKERLEK 82
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 29.5 bits (67), Expect = 2.1
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 13/69 (18%)
Query: 179 ESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVA 238
ESA+ P A A + A + AP A AA VA
Sbjct: 82 ESASDAGAAPAAAAEAAAAA-------------PAAAAAAAAKKAAPAPAAPAAPAAEVA 128
Query: 239 DDWTTPVGA 247
D P G
Sbjct: 129 ADPDIPAGT 137
>gnl|CDD|184410 PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase;
Provisional.
Length = 282
Score = 28.7 bits (65), Expect = 2.9
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 53 FCNTESPLRFVDIAIPCNNKSPHSIGLMWW 82
F LRFVDI S G MWW
Sbjct: 105 FFEKNQELRFVDI---------RSFGQMWW 125
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 28.7 bits (65), Expect = 3.1
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 169 EAEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAP 228
A KE + G +AAA AA A +A A Q AE +A+ + AP
Sbjct: 53 AAIKEARGGGAAAAA------ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAP 106
Query: 229 APQAAAAPVADDWTTPVGA 247
A +AAAA A+ + P A
Sbjct: 107 AARAAAAAAAEAASAPEAA 125
>gnl|CDD|236629 PRK09849, PRK09849, putative oxidoreductase; Provisional.
Length = 702
Score = 28.9 bits (65), Expect = 3.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 202 NDTVVPSADLAPQSWAEESASIPQYAPAP----QAAAAPVADDWTTPVG 246
N+ VVPS PQSWAE S ++ AA + P G
Sbjct: 234 NNHVVPST---PQSWAEYSDPGSRWTARKGLFWGAAEGGPIETGEIPPG 279
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.4 bits (64), Expect = 4.1
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 35/103 (33%)
Query: 37 HQPITE--------AAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLARE 87
H I+E A ++IP+IA S L R ++ +K P +L+
Sbjct: 324 HLQISEISRGLKLLARELDIPIIAL----SQLNRSLESR---ADKRP--------MLSD- 367
Query: 88 VLRFRGTIPREPKWDVVVDLFFYRDP-----EEAEKEEQAGKE 125
LR G I E D++ LF YRD EE EKE++A KE
Sbjct: 368 -LRESGAI--EQDADII--LFVYRDDVYKEREEKEKEKKAKKE 405
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 28.3 bits (63), Expect = 4.2
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 178 KESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPV 237
K +A +A PT S + AP S EE + + A AP
Sbjct: 78 KTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEE----SATATAPE 133
Query: 238 ADDWTTPVGADD 249
+ + P D
Sbjct: 134 SPSTSVPSSGSD 145
>gnl|CDD|236805 PRK10952, PRK10952, glycine betaine transporter membrane protein;
Provisional.
Length = 355
Score = 28.1 bits (63), Expect = 4.4
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 219 ESASIPQYAPAPQAAAAPVADDWTTPVGAD--DWGQDWSNST 258
+ P +AA AD W TP GA G DW NS
Sbjct: 3 ADQNNPWDTTPAADSAAQSADAWGTPAGAPTDGGGADWLNSA 44
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 28.3 bits (64), Expect = 5.1
Identities = 16/54 (29%), Positives = 20/54 (37%)
Query: 185 ADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVA 238
P AA A S + A + A +A+ P P P AAAA A
Sbjct: 41 TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94
Score = 28.3 bits (64), Expect = 5.8
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 174 EQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAA 233
G S AA AA + + P+A A A+ P+ A A AA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 234 AAPVAD 239
AAP A
Sbjct: 94 AAPAAP 99
>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase.
Length = 386
Score = 27.6 bits (61), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 125 ESAAAIADKPADEFAAHAPTESWNDTPILSVSCGG 159
+S + AD+ D +A++A WND +L V GG
Sbjct: 214 DSMTSRADQ-NDRWASYARPGGWNDPDMLEVGNGG 247
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 27.6 bits (61), Expect = 8.0
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 20/139 (14%)
Query: 112 DPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAE 171
D E++E+A A A A PA AA AP E P+ ++ + A+
Sbjct: 259 DLRSPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAA------HVETAAD 312
Query: 172 KEEQAGKESAAAIA-DKPVD-----EFAAHAPTESWNDTVV--------PSADLAPQSWA 217
K E+A K +AA A DKP D E AA P E+ P++ A + A
Sbjct: 313 KGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGA 372
Query: 218 EESASIPQYAPAPQAAAAP 236
A+ A A AAA
Sbjct: 373 SADAAARTPARARDAAAPD 391
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 27.2 bits (60), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 125 ESAAAIADKPADEFAAHAPTESWNDTPILSVSCGG 159
S IAD +++AA+A WND +L V GG
Sbjct: 244 ASMTTIADL-NNKWAAYAGPGGWNDPDMLEVGNGG 277
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 27.4 bits (61), Expect = 9.8
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 167 VSEAEKEEQAGKESAAAIADKPVD-EFAAHAPTESW---NDTVVPSADLAPQS--WAEES 220
+S A + Q + + D + + + +P +S + DL P W
Sbjct: 71 LSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAP 130
Query: 221 ASIPQYAPAPQAAAAPVA 238
PQ AP++ P
Sbjct: 131 KPEPQPPQAPESQPQPQT 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.415
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,588,379
Number of extensions: 1278584
Number of successful extensions: 1820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1732
Number of HSP's successfully gapped: 88
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)