RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9845
(261 letters)
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 175 bits (445), Expect = 1e-54
Identities = 57/132 (43%), Positives = 88/132 (66%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
+ EPR+L+VTDP +D Q I EA+YVNIPVIA C+++SPL +VD+ IPCNN+S S
Sbjct: 107 YQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTES 166
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPAD 136
I +++W++AREV RG + ++ +W+V+VDLF+++ AE++E +E A +K A+
Sbjct: 167 ISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAE 226
Query: 137 EFAAHAPTESWN 148
A + N
Sbjct: 227 VKEGEAEQNTDN 238
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 170 bits (432), Expect = 1e-52
Identities = 86/115 (74%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 11 FIFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCN 70
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCN
Sbjct: 139 GTFTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 197
Query: 71 NKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKE 125
NK HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDPEE EKEEQA E
Sbjct: 198 NKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAE 252
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 167 bits (424), Expect = 2e-51
Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 3/142 (2%)
Query: 12 IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
F N +F+EPRL++VTDP +D Q I EA+YVNIPVIA + +SP FVD+AIPCNN
Sbjct: 106 SFTN-YITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNN 164
Query: 72 KSPHSIGLMWWLLAREVLRFRGTI-PREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAI 130
+ HSIGL+W+LLAREVLR RG + R W ++ DL+FYRDPEE E++ + A
Sbjct: 165 RGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAG 224
Query: 131 ADKPADEFA-AHAPTESWNDTP 151
++ +E A W +
Sbjct: 225 EEEAKEEVTEEQAEATEWAEEN 246
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A
{Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Length = 208
Score = 157 bits (399), Expect = 4e-48
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 17 QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
+ +REP ++ V DP D Q ++EA V IPV+A C++ + VD+ IP NNK +
Sbjct: 108 PMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRA 167
Query: 77 IGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEE 120
+ +++WLLARE+ + RG D +L +
Sbjct: 168 LAIVYWLLAREIAKIRGQDFTYSIEDFEAEL-----EGGSHHHH 206
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 159 bits (404), Expect = 7e-48
Identities = 94/208 (45%), Positives = 115/208 (55%), Gaps = 14/208 (6%)
Query: 12 IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
F N Q Q +F EPRLL++TDP TDHQPI E+A NIP IAFC+T+SP+R+VDI IP NN
Sbjct: 111 TFTN-QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
Query: 72 KSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA 131
K SIG ++WLLAR VL+ RGTI KWDV+VDLFFYRDPEEA+++E+ E+A
Sbjct: 170 KGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE--EAALVAP 227
Query: 132 DKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDE 191
D A A ++W W A QAG + AA A
Sbjct: 228 DYGAVAEYAAPAADTWGGE----------WGTDAAAQPAAIPAQAGADWTAAPAPAAGGW 277
Query: 192 FAAHAPTESWNDTVVPSADLAP-QSWAE 218
A AP W P AP +W E
Sbjct: 278 DTAAAPAPGWEQGSAPVPAAAPTPNWGE 305
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 152 bits (386), Expect = 3e-45
Identities = 98/210 (46%), Positives = 119/210 (56%), Gaps = 24/210 (11%)
Query: 12 IFPNLQFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 71
F N Q QAAFREPRLLVVTDP DHQP+TEA+YVN+P IA CNT+SPLR+VDIAIPCNN
Sbjct: 107 TFTN-QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNN 165
Query: 72 KSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIA 131
K HS+GLMWW+LAREVLR RGTI RE W+V+ DL+FYRDPEE EKEEQA E A
Sbjct: 166 KGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKE 225
Query: 132 DKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDE 191
+ + A E P E + + + I P ++
Sbjct: 226 EFQGEWTA--PAPEFTAAQP-----------------EVADWSEGVQVPSVPIQQFPTED 266
Query: 192 FAAHAPTESWNDTVVPSADLAPQSWAEESA 221
++A TE W+ W +
Sbjct: 267 WSAQPSTEDWSAAPTA----QATEWVGTTT 292
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E*
1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B
1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B*
1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 48.7 bits (117), Expect = 4e-07
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P + V DP + + EA + IPVIA +T+S VD IP N+ + SI L+
Sbjct: 159 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRA 218
Query: 85 AREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQA 122
+++ RG + +V + E E E +A
Sbjct: 219 VDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA 256
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 231
Score = 44.0 bits (105), Expect = 1e-05
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P ++++ D ++ + E + IP I +T DI+IP N+ + SI L+ L
Sbjct: 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKL 217
Query: 85 AREVL 89
+
Sbjct: 218 VFAIC 222
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 42.5 bits (101), Expect = 4e-05
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 25 PRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 84
P L V D +H I EA + IPV A +T S VD IP N+ + ++ L +
Sbjct: 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAV 209
Query: 85 AREVL 89
A V
Sbjct: 210 AATVR 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.039
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 38/154 (24%)
Query: 111 RDPEEAEKEEQAGKESAAAI---ADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCV 167
R +AEK G + ++ P ++ P S P++ V ++V
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SC---PLIGVIQLAHYVV-TAK 254
Query: 168 S------EAEKEEQA----GKE--SAAAIADKPVDEFAAHAPT-ESWNDTVVPSADLAPQ 214
E + + +A AI A + ES+ +V + +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAI---------AETDSWESFFVSVRKAITVL-- 303
Query: 215 SW----AEESASIPQYAPAPQAAAAPVADDWTTP 244
+ E+ P + P + ++ P
Sbjct: 304 FFIGVRCYEAY--PNTSLPPSILEDSLENNEGVP 335
Score = 33.9 bits (77), Expect = 0.052
Identities = 31/169 (18%), Positives = 47/169 (27%), Gaps = 51/169 (30%)
Query: 93 GTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPI 152
G++ E V FF Q +E I +P + FAA D P
Sbjct: 14 GSL--EHVLLVPTASFFI--------ASQL-QEQFNKILPEPTEGFAAD-------DEPT 55
Query: 153 LSVSCGGCWLV----KFCVSEAEKEEQAGKESAAAIADKPVDEF-------------AAH 195
LV + S E + + + + EF AA
Sbjct: 56 TPAE-----LVGKFLGYVSSLVEPSKVG---QFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 196 APTESWNDTVVPSADLAPQSW--AEESASIPQYAPAP----QAAAAPVA 238
E NDT + +++ A A P + +A A
Sbjct: 108 LLQE--NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Score = 29.6 bits (66), Expect = 1.4
Identities = 45/345 (13%), Positives = 84/345 (24%), Gaps = 165/345 (47%)
Query: 22 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPL--RFVDIAIPCNNKSPHSIGL 79
F E R L + + + V + + + + +
Sbjct: 170 FEELRDL-----YQTYHVL---------VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 80 MWWLLAREVLRFRGTIPREPKWD------------VVVDLFFYR--------DPEEAEKE 119
+ WL P D V+ L Y P E
Sbjct: 216 LEWLENPS---------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 120 EQA----GKE--SAAAIADKPA-DEF----------------AAH--APT---------E 145
+ + +A AIA+ + + F + P +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 146 SWND-----TPILSVSCGGCWLVKFCVSEAEKEEQAGKESAAAIADKPVDEFAAHAPTES 200
S + +P+LS+S ++ + ++ V++ +H P
Sbjct: 327 SLENNEGVPSPMLSIS--NL-------TQEQVQDY-------------VNKTNSHLPAGK 364
Query: 201 W------N--DTVV---PSADL-----------APQSWAEESASIP----------QYAP 228
N +V P L AP + + IP ++ P
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFLP 422
Query: 229 --AP------QAAAAPV------------ADDWTTPV-----GAD 248
+P A+ + A D PV G+D
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 27.7 bits (61), Expect = 5.6
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 48/110 (43%)
Query: 87 EVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGK---E-SA-AAIADKPADEFAAH 141
E L+ +G IP D F AG E +A A++AD
Sbjct: 1745 EDLKSKGLIPA--------DATF------------AGHSLGEYAALASLAD--------- 1775
Query: 142 APTESWNDTPILSVSCGGCWLVKF---CVSEAEKEEQAGKESAAAIADKP 188
++S+ +V + + A ++ G+ + IA P
Sbjct: 1776 ----------VMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 31.1 bits (71), Expect = 0.34
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 27 LLVVTDPHTDHQPI------TEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGL- 79
+L V+ + E N P + + E+P + + S I +
Sbjct: 43 ILAVS---AEGDYRFLAPSLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIE 99
Query: 80 -MWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADK 133
+ G +P ++ +L +D EE + E A+ IADK
Sbjct: 100 DTMRADWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEH-----ASRIADK 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 214 QSWAEESASIPQYAP--APQAA 233
Q+ + AS+ YA AP A
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.5 bits (65), Expect = 1.3
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 1/152 (0%)
Query: 110 YRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTPILSVSCGGCWLVKFCVSE 169
Y EE E +G + + A E + G S
Sbjct: 18 YFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77
Query: 170 AEKEEQAGKESAAAIADKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPA 229
A E + + AA A KP ++ A+ E+ + P +D ++ E + + PA
Sbjct: 78 ASNEAATTETAEAASAAKPEEK-ASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136
Query: 230 PQAAAAPVADDWTTPVGADDWGQDWSNSTSQW 261
+A P + + + W
Sbjct: 137 AEANKTEKEVQPDVPKNTEKTLKPKEIKFNSW 168
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein
AF_135, structural genomics, PSI-II, dimer; 2.30A
{Archaeoglobus fulgidus dsm 4304}
Length = 142
Score = 28.3 bits (63), Expect = 1.4
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 43 AAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 86
A V+ I FC+ + L + + NN + ++
Sbjct: 90 TATVS--RINFCDENAVLSPIKVTFRLNN--IPFSRFLDYIAPE 129
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 28.8 bits (64), Expect = 2.6
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 186 DKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPV 245
P + A P + P+A +A P A AP AAAA +AD PV
Sbjct: 92 PDPSELAAKEEPAKEEAPAPTPAASAPA---PAAAAPAPVAAAAPAAAAAEIAD---EPV 145
Query: 246 GADD 249
A
Sbjct: 146 KASL 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 7.5
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 114 EEAEKEEQAGKESAAAIADKPADEFAAH 141
+E + + ++ A K +E+
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQR 126
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall
peptidase, creatinase/prolidase N-terminal domain,
PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Length = 140
Score = 25.9 bits (57), Expect = 8.4
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 8 TGLFIFPNLQFQAAF----REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFV 63
TG P + A ++P + P + + + PVI + + E+P +
Sbjct: 33 TGFGSDPIERVLALVVFPDQDPFIFA---PALEV-EVIKETGWQFPVIGYLDHENPWAMI 88
Query: 64 DIAIPCNNKSPHSIGL-MWWLLAREVLRFRGTIP 96
+ + +P + + L +
Sbjct: 89 ADQVKQRHVNPEHVAIEKGQLQVARMEALAAQFS 122
>3t43_A HIV epitope-scaffold 4E10_1XIZA_S0_006_C; putative
phosphotransferase system, transferase; 1.95A
{Artificial gene}
Length = 162
Score = 26.2 bits (58), Expect = 8.6
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 33 PHTDHQPITEAAYVNIPVIAFCNTESPLRF 62
PHTD + YV I+ P+ F
Sbjct: 49 PHTD------SKYVRQNAISVGILAEPVNF 72
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.8 bits (59), Expect = 8.9
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 186 DKPVDEFAAHAPTESWNDTVVPSADLAPQSWAEESASIPQYAPAPQAAAAPVADDWTTPV 245
+P+++ P + + +A A + A+ P APA AAPV D T
Sbjct: 92 VEPIEDEPEPTPAAA---SSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.415
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,189,119
Number of extensions: 248006
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 32
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)