RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9845
         (261 letters)



>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 193

 Score =  105 bits (263), Expect = 1e-28
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query: 17  QFQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHS 76
              + +REP ++ V DP  D Q ++EA  V IPV+A C++ +    VD+ IP NNK   +
Sbjct: 103 PMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRA 162

Query: 77  IGLMWWLLAREVLRFRGTIPREPKWDVVVDL 107
           + +++WLLARE+ + RG        D   +L
Sbjct: 163 LAIVYWLLAREIAKIRGQDFTYSIEDFEAEL 193


>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
           thermophilus [TaxId: 274]}
          Length = 234

 Score = 92.5 bits (229), Expect = 3e-23
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
            R P  + V DP  +   + EA  + IPVIA  +T+S    VD  IP N+ +  SI L+ 
Sbjct: 150 KRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLIL 209

Query: 82  WLLAREVLRFRGTIPR-EPKWDVV 104
                 +++ RG +    P + +V
Sbjct: 210 SRAVDLIIQARGGVVEPSPSYALV 233


>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
           [TaxId: 562]}
          Length = 218

 Score = 83.6 bits (206), Expect = 5e-20
 Identities = 22/69 (31%), Positives = 30/69 (43%)

Query: 22  FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMW 81
              P  L V D   +H  I EA  + IPV A  +T S    VD  IP N+ +  ++ L  
Sbjct: 147 GGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYL 206

Query: 82  WLLAREVLR 90
             +A  V  
Sbjct: 207 GAVAATVRE 215


>d1iega_ b.57.1.1 (A:) Human cytomegalovirus protease {Human
           cytomegalovirus [TaxId: 10359]}
          Length = 248

 Score = 25.2 bits (55), Expect = 7.9
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 90  RFRGTIP---REPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAA 140
           R RGT+    R+P+W  V   F      + +      +   +   D   D F +
Sbjct: 157 RRRGTLAVYGRDPEW--VTQRFPDLTAADRDGLRAQWQRCGSTAVDASGDPFRS 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.415 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,997
Number of extensions: 45896
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 6
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)