BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy985
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BKD|N Chain N, Structure Of The N-Terminal Domain Of Fragile X Mental
           Retardation Protein
          Length = 134

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 60/99 (60%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQP+ +  F  VR PP    N    E+ EVEV+S+A E E C WW   V+MIKG+F+V+E
Sbjct: 36  WQPDRQIPFXDVRFPPPVGYNKDINESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIE 95

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP 115
           Y  C +T+ EIV  ER+R  N N P    TF K  ++VP
Sbjct: 96  YAACDATYNEIVTIERLRSVNPNKPATKDTFXKIKLDVP 134


>pdb|3KUF|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr1
 pdb|3O8V|A Chain A, Crystal Structure Of The Tudor Domains From Fxr1
          Length = 131

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQPE +  F+ VRLPP   I     E  EVEV+S+A + E CGWW   V+M+KG+F+V+E
Sbjct: 35  WQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIE 94

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIE 113
           Y  C +T+ EIV  ER+R  N N  +   TF K  ++
Sbjct: 95  YAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVD 131


>pdb|3H8Z|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr2
          Length = 128

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 53/91 (58%)

Query: 17  WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
           WQ E +  F  VRLPP    N    E  EVEV+S+A E E CGWW   V+  KGDF+V+E
Sbjct: 38  WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRXXKGDFYVIE 97

Query: 77  YLGCQSTFTEIVPPERMRQKNTNPPIDAKTF 107
           Y  C +T+ EIV  ER+R  N NP     +F
Sbjct: 98  YAACDATYNEIVTLERLRPVNPNPLATKGSF 128


>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline
 pdb|4AFG|B Chain B, Capitella Teleta Achbp In Complex With Varenicline
 pdb|4AFG|C Chain C, Capitella Teleta Achbp In Complex With Varenicline
 pdb|4AFG|D Chain D, Capitella Teleta Achbp In Complex With Varenicline
 pdb|4AFG|E Chain E, Capitella Teleta Achbp In Complex With Varenicline
 pdb|4AFH|A Chain A, Capitella Teleta Achbp In Complex With Lobeline
 pdb|4AFH|B Chain B, Capitella Teleta Achbp In Complex With Lobeline
 pdb|4AFH|C Chain C, Capitella Teleta Achbp In Complex With Lobeline
 pdb|4AFH|D Chain D, Capitella Teleta Achbp In Complex With Lobeline
 pdb|4AFH|E Chain E, Capitella Teleta Achbp In Complex With Lobeline
 pdb|4B5D|A Chain A, Capitella Teleta Achbp In Complex With Psychonicline
          (3-((2(S)-
          Azetidinyl)methoxy)-5-((1s,
          2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
 pdb|4B5D|B Chain B, Capitella Teleta Achbp In Complex With Psychonicline
          (3-((2(S)-
          Azetidinyl)methoxy)-5-((1s,
          2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
 pdb|4B5D|C Chain C, Capitella Teleta Achbp In Complex With Psychonicline
          (3-((2(S)-
          Azetidinyl)methoxy)-5-((1s,
          2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
 pdb|4B5D|D Chain D, Capitella Teleta Achbp In Complex With Psychonicline
          (3-((2(S)-
          Azetidinyl)methoxy)-5-((1s,
          2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
 pdb|4B5D|E Chain E, Capitella Teleta Achbp In Complex With Psychonicline
          (3-((2(S)-
          Azetidinyl)methoxy)-5-((1s,
          2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
          Length = 230

 Score = 26.6 bits (57), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 13 SLLRWQPESKFQFSMVRLPPRE 34
          ++LRW PE  F F  + + P E
Sbjct: 72 TILRWDPEPPFDFQKIEISPDE 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,433,343
Number of Sequences: 62578
Number of extensions: 201580
Number of successful extensions: 458
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)