RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy985
(191 letters)
>gnl|CDD|218672 pfam05641, Agenet, Agenet domain. This domain is related to the
TUDOR domain pfam00567. The function of the agenet
domain is unknown. This family currently only matches
one of the two Agenet domains in the FMR proteins.
Length = 66
Score = 36.2 bits (84), Expect = 8e-04
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 40 FVENQEVEVFSKATEGESCGWWKVIV-KMIKGDFHVVEYL------GCQSTFTEIVPPER 92
F + EVEV S+ E W++ V K + D + VEY G + E V R
Sbjct: 1 FSKGSEVEVSSEEEGFEGA-WFRAKVLKELGEDKYKVEYDDLSLEDGGSAPLNETVDLRR 59
Query: 93 MR 94
+R
Sbjct: 60 IR 61
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
Length = 335
Score = 30.9 bits (70), Expect = 0.30
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 71 DFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVP 115
+ V+ + S E +P E +R + P I TFH D +VP
Sbjct: 2 EVERVQAIASSSLLKETIPEEFIRSEKEQPAI--TTFHGVDPQVP 44
>gnl|CDD|221457 pfam12192, CBP, Fungal calcium binding protein. This domain is
found in eukaryotes, and is approximately 60 amino
acids in length. There is a single completely conserved
residue C that may be functionally important. This is a
calcium binding domain from the fungal protein CBP
(calcium binding protein). This protein is a virulence
factor with unknown virulence mechanisms. CBP complexes
as a highly intertwined homodimer. Each monomer is
comprised of four alpha helices which adopt the saposin
fold, characteristic of a protein family that binds to
membranes and lipids.
Length = 59
Score = 28.9 bits (64), Expect = 0.37
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 43 NQEVEVFSKATEGESCGWWKVI 64
N+ V VF+KA E C W I
Sbjct: 12 NEAVSVFTKAKEAAGCSWLACI 33
>gnl|CDD|176903 cd08894, SRPBCC_CalC_Aha1-like_1, Putative hydrophobic
ligand-binding SRPBCC domain of an uncharacterized
subgroup of CalC- and Aha1-like proteins. SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a
functionally uncharacterized subgroup of CalC- and
Aha1-like proteins. This group shows similarity to the
SRPBCC domains of Micromonospora echinospora CalC (a
protein which confers resistance to enediynes) and human
Aha1 (one of several co-chaperones which regulate the
dimeric chaperone Hsp90), and belongs to the SRPBCC
domain superfamily of proteins that bind hydrophobic
ligands. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
Length = 139
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 81 QSTFTEIVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQ 119
+ F EI PPER+ + + P +F + V + Q
Sbjct: 64 RIVFLEIEPPERIVYDHGSGP------PRFRLTVTFEEQ 96
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 28.2 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 87 IVPPERMRQKNTNPPIDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAA 138
++PPE K P I A + FD+E+ LDV+ K + + KA +A
Sbjct: 218 VIPPELAYGKAGVPGIPANSTLVFDVEL-LDVKPAPKADAKPEADAKAADSA 268
>gnl|CDD|219798 pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-like protein.
This family includes eukaryotic, prokaryotic and
archaeal proteins that bear similarity to a C-terminal
region of human activator of 90 kDa heat shock protein
ATPase homolog 1 (AHSA1/p38). This protein is known to
interact with the middle domain of Hsp90, and stimulate
its ATPase activity. It is probably a general
upregulator of Hsp90 function, particularly contributing
to its efficiency in conditions of increased stress. p38
is also known to interact with the cytoplasmic domain of
the VSV G protein, and may thus be involved in protein
transport. It has also been reported as being
underexpressed in Down's syndrome. This region is found
repeated in two members of this family.
Length = 125
Score = 26.6 bits (59), Expect = 4.8
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 60 WWKVIVKMIK----GDFHVVEY-----LGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKF 110
W+ + G F V G T+ E+VPPER+ +
Sbjct: 20 WFTTTEAEMDLRPGGRFRFVMRGDGEEFGGNGTYLEVVPPERIVYTWRLFDWPEGGYSTV 79
Query: 111 DIE 113
+E
Sbjct: 80 TVE 82
>gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found
in glycogen debranching enzymes. Debranching enzymes
facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes in
Escherichia coli and other bacteria. Debranching enzymes
perform two activities: 4-alpha-D-glucanotransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the
endohydrolysis of 1,6-alpha-D-glucoside linkages at
points of branching in chains of 1,4-linked
alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase
catalyzes the endohydrolysis of 1,6-alpha-D-glucoside
linkages at points of branching in chains of 1,4-linked
alpha-D-glucose residues. In Escherichia coli, GlgX is
the debranching enzyme and malQ is the
4-alpha-glucanotransferase. TreX, an archaeal
glycogen-debranching enzyme has dual activities like
mammals and yeast, but is structurally similar to GlgX.
TreX exists in two oligomeric states, a dimer and
tetramer. Isoamylase (EC 3.2.1.68) is one of the
starch-debranching enzymes that catalyzes the hydrolysis
of alpha-1,6-glucosidic linkages specific in
alpha-glucans such as amylopectin or glycogen and their
beta-limit dextrins. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with
the majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 433
Score = 27.4 bits (62), Expect = 5.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 105 KTFHKFDIEVPLDV 118
K HK IEV LDV
Sbjct: 116 KALHKAGIEVILDV 129
>gnl|CDD|215203 PLN02355, PLN02355, probable galactinol--sucrose
galactosyltransferase 1.
Length = 758
Score = 27.5 bits (61), Expect = 5.7
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 114 VPLDVQEFAKMEGA-H-------KDFQKAIAAAIVRYIPDKGALSVISRDEA---CQKRA 162
V +DVQ + GA H + + +A+ A+I R PD G +S +S + KR
Sbjct: 391 VKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPDNGIISCMSHNTDGLYSAKRT 450
Query: 163 SMIK 166
++I+
Sbjct: 451 AVIR 454
>gnl|CDD|218563 pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase. These
peptidases are found in Archaea and Bacteria. The
example in Lactococcus lactis, PepA, aids growth on
milk. Pyrococcus horikoshii contain a thermostable
de-blocking aminopeptidase member of this family used
commercially for N-terminal protein sequencing.
Length = 292
Score = 26.8 bits (60), Expect = 7.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 121 FAKMEGAHKDFQKAIAA------AIVRYIPDKGALSV 151
A +G K + +AA +V I D G L
Sbjct: 4 IATKKGKEKGPKIMVAAHMDEIGFMVTEIKDNGFLRF 40
>gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional.
Length = 320
Score = 26.5 bits (59), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 112 IEVPLDVQEFAKMEGAHKDFQKAIA 136
IE PL +F +M +D+Q IA
Sbjct: 197 IEQPLPPDQFDEMLQLSQDYQTPIA 221
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 26.4 bits (59), Expect = 8.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 121 FAKMEGAHKDFQKAIAAAIVRYIPD 145
F M G K+ Q+ I IVRYI D
Sbjct: 62 FGFMSGVPKEVQEKIKDEIVRYIED 86
>gnl|CDD|224827 COG1915, COG1915, Uncharacterized conserved protein [Function
unknown].
Length = 415
Score = 26.6 bits (59), Expect = 8.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 41 VENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNT 98
VE Q ++ T K I ++ KGD VV G + ++PPER R+K
Sbjct: 115 VEGQRMDCAIVVTPEPRRARCKPIRELKKGDLVVVGVEGIR-----VIPPERPREKTG 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,656,761
Number of extensions: 870497
Number of successful extensions: 687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 15
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)