RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy985
(191 letters)
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
FXR2, structura genomics, structural genomics
consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
2bkd_N*
Length = 128
Score = 119 bits (298), Expect = 4e-35
Identities = 44/91 (48%), Positives = 55/91 (60%)
Query: 17 WQPESKFQFSMVRLPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVE 76
WQ E + F VRLPP N E EVEV+S+A E E CGWW V+M+KGDF+V+E
Sbjct: 38 WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIE 97
Query: 77 YLGCQSTFTEIVPPERMRQKNTNPPIDAKTF 107
Y C +T+ EIV ER+R N NP +F
Sbjct: 98 YAACDATYNEIVTLERLRPVNPNPLATKGSF 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.008
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 21/47 (44%)
Query: 119 QEFAKMEGAHKDFQKAIAAAIVRYIPDKG-ALSVISRDEACQKRASM 164
Q K++ + K Y D AL++ +A+M
Sbjct: 20 QALKKLQASLK-----------LYADDSAPALAI---------KATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.023
Identities = 16/176 (9%), Positives = 44/176 (25%), Gaps = 49/176 (27%)
Query: 34 ETINSGFVENQEVEVFSKATEG-------ESCG----WWKVIVKMIKGDFHVVEY---LG 79
+ + ++ + K + E +I + I+ + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 80 CQ------STFTEIVPPERMRQ---------KNTNPPIDAKTFHKF-----DIEVPLDVQ 119
C + ++ P R+ + + I +V + V
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVN 409
Query: 120 EFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRASMIKDMHFRNLNQ 175
+ K K +++ IP I + + +H ++
Sbjct: 410 KLHKYSLVEKQPKES-----TISIPS------IYLELKVKLENE--YALHRSIVDH 452
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding,
viral protein; HET: ATP; 2.15A {Bacillus phage PHI29}
PDB: 3suc_A*
Length = 772
Score = 29.5 bits (65), Expect = 0.79
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 112 IEVPLDVQEF-AKMEGAHKD---FQKAIAAAIVRYIP 144
+ + V+ + AK +G D F+KAI + Y+P
Sbjct: 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIESGFPVYVP 55
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate
decarboxylase; structural genomics, MCSG; 2.00A
{Staphylococcus aureus subsp} SCOP: d.290.1.1
Length = 237
Score = 28.7 bits (64), Expect = 0.86
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 102 IDAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAA 138
++ + F F P++ + F K + +KD + I A
Sbjct: 200 VEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREA 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.98
Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 55/155 (35%)
Query: 1 MCGHS-------------FNVSNPFSLLRW-----------QPESKFQFSMVRLPPRETI 36
GHS ++ + ++ + + + M+ + P
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 37 NSGFVENQE--VEVFSKATEGESC--------GWWKVIVKMIKGDFHVVEYLGCQSTFTE 86
S E + VE K T G + V GD ++ + T
Sbjct: 1819 ASFSQEALQYVVERVGKRT-GWLVEIVNYNVEN--QQYV--AAGDLRALDTV------TN 1867
Query: 87 IVPPERMRQKNTNPPID-AKTFHKFDIEVPLDVQE 120
++ ++ + ID + +E +V+
Sbjct: 1868 VL--NFIKLQK----IDIIELQKSLSLE---EVEG 1893
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 28.6 bits (63), Expect = 1.4
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 112 IEVPLDVQEF-AKMEGAHKD---FQKAIAAAIVRYIP 144
+ + V+ + AK +G D F+KAI + Y+P
Sbjct: 19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIESGFPVYVP 55
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 26.6 bits (59), Expect = 1.8
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 40 FVENQEVEVFSKATEGESCGWWKV 63
NQ++++ + WW
Sbjct: 32 VSANQKLKILEFKDVTGNTEWWLA 55
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like
fold, B-sheet toroid, 14-MER, cadmium-binding site,
translation; 2.00A {Pyrobaculum aerophilum} SCOP:
b.38.1.1
Length = 130
Score = 27.4 bits (60), Expect = 2.1
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 62 KVIVKMIKGDFHVVEYLGCQSTFTEIVPPERMRQKNTNPPIDAKTFHKFDI---EVPLDV 118
+V V + G+ + + ++ + + + I E +D+
Sbjct: 12 EVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIMYRYIVHIDSTERRIDM 71
Query: 119 QEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISR 154
+EFAK I +V+YI + + + +
Sbjct: 72 REFAKQAE-------KIFPGMVKYIEETNVVLIGDK 100
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4
tail, DNA backbone recognitio methyllysine recognition,
H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB:
3oa6_A* 3ob9_A*
Length = 110
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 30 LPPRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGD--------FHVVEYLGCQ 81
+ E + F ++V F + IV +I G +++ + G
Sbjct: 10 MSASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWN 69
Query: 82 STFTEIVPPERMRQKN 97
++ + + +
Sbjct: 70 RSWDRWAAEDHVLRDT 85
>2jv7_A CBP, calcium-binding protein; virulence factor, homodimer, all
alpha helical, glycoprotein, secreted, metal binding
protein; NMR {Ajellomyces capsulatus}
Length = 78
Score = 26.3 bits (57), Expect = 2.3
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 43 NQEVEVFSKATEGESCGW 60
N+ V VF++ + +C W
Sbjct: 13 NEAVRVFTQLSSAANCDW 30
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 25.8 bits (57), Expect = 3.2
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 40 FVENQEVEVFSKATEGESCGWWKV 63
E++ +EV G+ W K
Sbjct: 32 IEEHEVLEVIED---GDMEDWVKA 52
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 25.9 bits (57), Expect = 4.4
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 40 FVENQEVEVFSKATEGESCGWWK 62
F + + K + + GW
Sbjct: 36 FRAGDMLNLALKEQQPKVRGWLL 58
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 68 IKGDFHVVEYLGCQSTFTE 86
I+G V EYLG +STF
Sbjct: 592 IRGGIDVPEYLGSRSTFAM 610
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,959,440
Number of extensions: 168459
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 19
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)