RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy985
         (191 letters)



>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 232

 Score = 28.6 bits (64), Expect = 0.34
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 107 FHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAA 138
           F  F    P++ + F K +  +KD  + I  A
Sbjct: 200 FETFQQHFPVNNETFVKAKIDYKDVAEEIREA 231


>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 27.5 bits (60), Expect = 0.41
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 32  PRETINSGFVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPPE 91
             + ++   +E   V V  K     S   W +   + KG  +        S+F +   P 
Sbjct: 28  AAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVY--------SSFLKPYNPR 79

Query: 92  RMRQKNTNPP 101
           R     ++ P
Sbjct: 80  RSHSDASSGP 89


>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 79

 Score = 25.2 bits (55), Expect = 1.7
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 8/51 (15%)

Query: 40 FVENQEVEVFSKATEGESCGWWKVIVKMIKGDFHVVEYLGCQSTFTEIVPP 90
             NQ++++        +  WW   V   KG           S +      
Sbjct: 32 VSANQKLKILEFKDVTGNTEWWLAEVNGKKGYV--------PSNYIRKTES 74


>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
           [TaxId: 562]}
          Length = 204

 Score = 25.6 bits (56), Expect = 3.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 20  ESKFQFSMVRLPPRETINSGFVENQEVEVFSK 51
             K + +  R P R  +++   E+  VE++SK
Sbjct: 173 AGKMEGTFKRKPERSDLSADINEHLIVELYSK 204


>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 159

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 21  SKFQFSMVRLPPRETINSGFVENQEVEVFSK 51
            K + +  RLP R  + +   E   VE +S+
Sbjct: 129 EKMEGTYTRLPERSELPAEINEALIVEFYSR 159


>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 328

 Score = 24.5 bits (53), Expect = 9.1
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 103 DAKTFHKFDIEVPLDVQEFAKMEGAHKDFQKAIAAAIVRYIPDKGALSVISRDEACQKRA 162
           D        ++  + +++   +   ++ + K    AI  YI  K      S     +   
Sbjct: 180 DPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVG 239

Query: 163 SMIKDMHFRNLNQK 176
           SM+ D+H R L   
Sbjct: 240 SMVADVH-RTLVYG 252


>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 208

 Score = 24.5 bits (53), Expect = 9.2
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 21  SKFQFSMVRLPPRETINSGFVENQEVEVFSK 51
              +   +RLP RE +     E   +E +S+
Sbjct: 178 EGMKGKFLRLPDREDLALPVNEQLVIEFYSR 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,314
Number of extensions: 33303
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 12
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)