BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9852
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F D + D Q + + DV+ + G +G + C+G GK+YTM+G+ ++ G
Sbjct: 74 FKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRG 133
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
++P A+ +FR I E+ +VR S +EI + S + DLLST
Sbjct: 134 ILPRALQQVFRMIEERPTHA---ITVRVSYLEIYNES--LFDLLST 174
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FDA++ + Q+++ + +I +V+ G +G +F +G GK+YTM G+
Sbjct: 70 FTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELR 129
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
GVIP+A +F IS +++ ++ VRAS +EI + ++DLLS
Sbjct: 130 GVIPNAFEHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLS 170
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF E +++ LS +IQ + G++ C+F +G GK++TM S T G
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM-----SHPTNG 486
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
+IP ++ +F I E K K G ++VR IEI + + + DLL+
Sbjct: 487 MIPLSLKKIFNDIEELKEK-GWSYTVRGKFIEIYNEA--IVDLLN 528
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FDA++ + Q E+ ++ +V+ G +G +F +G GK+YTM G
Sbjct: 70 FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR 129
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
GVIP++ +F IS +++ ++ VRAS +EI + ++DLLS
Sbjct: 130 GVIPNSFDHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLS 170
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1 MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
+F+FD +F QS+I +S +IQ+ + G + C+F +G GK+YTM G P+S
Sbjct: 101 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 156
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
+GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 157 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 211
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+F+FD +F +S +IQ+ + G + C+F +G + GK+YTM G P+S +
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES---V 160
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 161 GVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 214
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1 MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
+F+FD +F QS+I +S +IQ+ + G + C+F +G GK+YTM G P+S
Sbjct: 115 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 170
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
+GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 171 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 225
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 1 MFAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
+F+FD +F QS+I +S +IQ+ + G + C+F +G GK+YTM G P+S
Sbjct: 107 IFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES--- 162
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
+GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 163 VGVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 217
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+F+FD +F +S +IQ+ + G + C+F +G GK+YTM G P+S +
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES---V 160
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 161 GVIPRTVDLLFDSIRGYRN-LGWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 214
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL- 60
F+FD +F + ++ ++Q+ + G C+F +G GK++TM G P L
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLE 144
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
G+IP A+ LF ++++ G +S AS +EI + + V+DLL+T + C ++
Sbjct: 145 GLIPRALRHLF-SVAQELSGQGWTYSFVASYVEIYNET--VRDLLATGTRKGQGGECEIR 201
Query: 121 RFHAEEDE 128
R +E
Sbjct: 202 RAGPGSEE 209
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 119
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K
Sbjct: 120 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 167
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 107
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K
Sbjct: 108 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 155
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 108
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K
Sbjct: 109 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNK 156
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FD +F +E + + +I + I G +G +F +G GK+YTM+GS L
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDH---L 102
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
GVIP AI +F+ I + + F +R S +EI + + + DLL
Sbjct: 103 GVIPRAIHDIFQKIKKFPDR---EFLLRVSYMEIYNET--ITDLL 142
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + +F +G GK++TM+ G
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD-----G 164
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+IPS IS +F I++ K K G + V A IEI ++++ DLL + +N K
Sbjct: 165 IIPSTISHIFNWINKLKTK-GWDYKVNAEFIEI--YNENIVDLLRSDNNNK 212
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG-SPQSSAT 59
F FD +F QS+I ++ + +++G +G +F +G GKSYTM+G S
Sbjct: 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 108
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
GVIP + +F I ++VR S +EI + ++DLL+
Sbjct: 109 RGVIPRIVEQIFTSI--LSSAANIEYTVRVSYMEI--YMERIRDLLA 151
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
F FD F E Q ++ + +S +I+ V++G + +F +G GK++TMVG+
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKS 128
Query: 55 --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+ + +G+IP A+S LF ++ +++R S +E+ ++ + DLLST K
Sbjct: 129 SWEDDSDIGIIPRALSHLF----DELRMMEVEYTMRISYLEL--YNEELCDLLSTDDTTK 182
Query: 113 F 113
Sbjct: 183 I 183
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
++ FD +F + Q ++ A ++ V++G +G +F +G GK++TM G S
Sbjct: 52 VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK 111
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
G+IP ++ +F I + F ++ S EI ++DLL
Sbjct: 112 QGIIPRIVNDIFNHIYAM--EVNLEFHIKVSYYEIYMDK--IRDLL 153
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+AFD +F S Q ++ +++ V+ G +G +F +G GK++TM G +
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
G+IP + +F I F ++ S EI ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+AFD +F S Q ++ +++ V+ G +G +F +G GK++TM G +
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
G+IP + +F I F ++ S EI ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+AFD +F S Q ++ +++ V+ G +G +F +G GK++TM G +
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGM 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
G+IP + +F I F ++ S EI ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDE--NLEFHIKVSYFEIYLDK--IRDLL 146
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SP---- 54
+ FD +F + Q ++ S ++ ++ VI G + +F +G GK++TM G SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 55 --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
+ G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 126 CWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + ++ + +IQ+ + G + C+F +G GK+YTM+ G
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD-----G 130
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
++P+ I+ +F I + + G + V IEI ++++ DLL
Sbjct: 131 IVPATINHIFSWIDKLAAR-GWSYKVSCEFIEI--YNENIVDLL 171
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 31 GSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF-RCISEQKHKTGARFSVRA 89
G C+F +G GKSYTM+G+P G+IP LF R S Q ++V+
Sbjct: 135 GYHTCIFAYGQTGSGKSYTMMGTPDQP---GLIPRTCEDLFQRIASAQDETPNISYNVKV 191
Query: 90 SAIEISSSSQHVKDLLS 106
S E+ ++HV+DLL+
Sbjct: 192 SYFEV--YNEHVRDLLA 206
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF ++ + ++Q+ + G + C+F +G GK+YTM+ +A G
Sbjct: 55 FQFDMIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML-----NAGDG 109
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTY 108
+IP +S +F+ + K + G + + IEI + + + DLL +
Sbjct: 110 MIPMTLSHIFKWTANLKER-GWNYEMECEYIEIYNET--ILDLLRDF 153
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 168
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 124
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 176
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 110
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 111 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 162
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 127
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 179
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59 TL------GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG--SPQSSA 58
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G SP
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 59 T------LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
T G+IP + +F +++ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEI--YNEELFDLLNPSSD 177
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+ FDA + + Q +I ++ +++ ++ G + + +G GK++TM+GSP+
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP--- 123
Query: 61 GVIPSAISWLFRCISEQKHKTGA-RFSVRASAIEISSSSQHVKDLLSTYSNGKFFR 115
GVIP A+ L + E+ + SV S +EI + V DLL S R
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEI--YQEKVLDLLDPASGDLVIR 177
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13 QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
Q ++ +++Q G + C+F +G GKSYTM+G Q G+IP LF
Sbjct: 70 QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
I++ + + +SV S +EI + V+DLL+ + G
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13 QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
Q ++ +++Q G + C+F +G GKSYTM+G Q G+IP LF
Sbjct: 86 QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 144
Query: 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
I++ + + +SV S +EI + V+DLL+ + G
Sbjct: 145 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 182
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13 QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
Q ++ +++Q G + C+F +G GKSYTM+G Q G+IP LF
Sbjct: 70 QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
I++ + + +SV S +EI + V+DLL+ + G
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 13 QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72
Q ++ +++Q G + C+F +G GKSYTM+G Q G+IP LF
Sbjct: 70 QKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGIIPQLCEDLFS 128
Query: 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF 113
I++ + + +SV S +EI + V+DLL+ + G
Sbjct: 129 RINDTTNDNMS-YSVEVSYMEI--YCERVRDLLNPKNKGNL 166
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F D +FS + + + ++ + I G + C+F +G GK+YTM G+ ++ G
Sbjct: 50 FELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---G 106
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKF-FRLC 117
+ A+ LF + Q+ + +++ SA EI ++ ++DLL K RLC
Sbjct: 107 INQRALQLLFSEV--QEKASDWEYTITVSAAEI--YNEVLRDLLGKEPQEKLEIRLC 159
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 23 DVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTG 82
+++Q G + C+F +G GKSYTM+G+ G+IP S LF +++++
Sbjct: 83 NILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP---GLIPRLCSGLFERTQKEENEEQ 139
Query: 83 ARFSVRASAIEISSSSQHVKDLL 105
+ F V S +EI ++ V+DLL
Sbjct: 140 S-FKVEVSYMEI--YNEKVRDLL 159
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 4 FDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI 63
+D +F + ++Q+ + G + C+F +G GK++T+ G+ + G+
Sbjct: 51 YDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLT 107
Query: 64 PSAISWLFRCISEQKHKTGARFSVRASAIEI 94
P A+S LFR + + +K FS++A +E+
Sbjct: 108 PRAMSELFRIMKKDSNKFS--FSLKAYMVEL 136
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+ FD + + Q ++ + +++ V+ G +G +F +G GK++TM G +
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
G+IP +F I F ++ S EI ++DLL
Sbjct: 106 GIIPRIAHDIFDHIYSMDE--NLEFHIKVSYFEIYLDK--IRDLLDV 148
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 2 FAFDAIFSD-EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FDA+F + QSE+ ++++ ++G + + +G GK++TM+GS
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
GV+ + L++C+ E K + +V S +E+ ++ ++DLL
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKICSTAV--SYLEV--YNEQIRDLL 171
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 2 FAFDAIFSDEP-QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FDA++ I ++ +I AV+ G + +F +G GK++TM G+ +
Sbjct: 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP--- 114
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLL 105
G IP++ LF I+ + F V S +E+ ++ ++DL+
Sbjct: 115 GAIPNSFKHLFDAINSS--SSNQNFLVIGSYLEL--YNEEIRDLI 155
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F F + + D Q + + + +++A G + +F +G GK+YTM G ++ L
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLL 110
Query: 61 ----GVIPSAISWLFRCISE 76
G++P A++ F+ I E
Sbjct: 111 EDEQGIVPRAMAEAFKLIDE 130
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F F + + D Q + + + +++A G + +F +G GK+YTM G ++ L
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLL 110
Query: 61 ----GVIPSAISWLFRCISE 76
G++P A++ F+ I E
Sbjct: 111 EDEQGIVPRAMAEAFKLIDE 130
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT- 59
F FD F + Q E+ + + ++ ++ G +G GKSY+M +P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 60 --LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEI 94
LG++P A+ +F ++ ++ V AS IEI
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEI 159
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 4 FDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI 63
+D +F + ++Q+ + G + C+F +G GK++T+ G + G+
Sbjct: 59 YDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP---GLT 115
Query: 64 PSAISWLFRCISEQKHKTGARFSVRASAIEI 94
P A LF + + FS++A +E+
Sbjct: 116 PRATKELFNILKRDSKRFS--FSLKAYMVEL 144
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT- 59
F FD F + Q E+ + + ++ ++ G +G GKSY+M +P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 60 --LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEI 94
LG++P A+ +F ++ ++ V AS IEI
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEI 159
>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
pdb|3IK7|A Chain A, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|B Chain B, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|C Chain C, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|D Chain D, Human Glutathione Transferase A4-4 With Gsdhn
Length = 222
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 168 RLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCK 205
+LH P G G ++S R +G+++ + LET EQ K
Sbjct: 6 KLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYK 43
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
FAFD S+E L +Q + G F +G GK++TM G
Sbjct: 127 FAFDETASNEVVYRFTARPL---VQTIFEGGKATCFAYGQTGSGKTHTMGG 174
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
FAFD S+E L +Q + G F +G GK++TM G
Sbjct: 107 FAFDETASNEVVYRFTARPL---VQTIFEGGKATCFAYGQTGSGKTHTMGG 154
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
FAFD S+E L +Q + G F +G GK++TM G
Sbjct: 55 FAFDETASNEVVYRFTARPL---VQTIFEGGKATCFAYGQTGSGKTHTMGG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,116,240
Number of Sequences: 62578
Number of extensions: 288492
Number of successful extensions: 629
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 61
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)