Query psy9852
Match_columns 241
No_of_seqs 148 out of 1270
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:18:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 9.4E-52 2E-56 396.5 13.8 214 1-228 53-278 (574)
2 cd01373 KISc_KLP2_like Kinesin 100.0 3.5E-48 7.6E-53 355.9 20.2 215 1-228 42-266 (337)
3 cd01370 KISc_KIP3_like Kinesin 100.0 9.6E-48 2.1E-52 353.1 19.7 209 1-229 55-269 (338)
4 KOG0243|consensus 100.0 9.2E-49 2E-53 391.1 11.8 209 1-229 96-324 (1041)
5 KOG0245|consensus 100.0 2.3E-48 4.9E-53 384.2 10.5 216 1-227 48-283 (1221)
6 KOG0242|consensus 100.0 1.4E-46 3E-51 370.4 19.2 190 1-207 54-246 (675)
7 cd01368 KISc_KIF23_like Kinesi 100.0 4E-46 8.6E-51 343.4 20.6 204 1-228 56-274 (345)
8 PLN03188 kinesin-12 family pro 100.0 3.5E-46 7.6E-51 376.5 20.9 216 1-229 133-363 (1320)
9 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-45 2.9E-50 336.8 18.3 203 1-224 52-263 (322)
10 cd01371 KISc_KIF3 Kinesin moto 100.0 4.3E-45 9.3E-50 334.8 20.4 215 1-227 49-274 (333)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8.4E-45 1.8E-49 335.6 21.5 211 1-228 49-274 (356)
12 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.6E-45 1.2E-49 332.6 19.9 211 1-229 44-258 (325)
13 KOG0240|consensus 100.0 9E-46 1.9E-50 349.7 14.8 211 1-228 50-263 (607)
14 cd01375 KISc_KIF9_like Kinesin 100.0 1.2E-44 2.7E-49 331.9 19.5 210 1-223 49-273 (334)
15 cd01376 KISc_KID_like Kinesin 100.0 2E-44 4.4E-49 328.6 19.7 205 1-229 48-255 (319)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 2.1E-44 4.5E-49 328.5 19.4 212 1-227 41-261 (321)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 1.3E-43 2.7E-48 325.4 20.0 218 1-229 41-271 (341)
18 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.2E-43 4.7E-48 325.4 21.2 211 1-229 49-277 (352)
19 KOG0239|consensus 100.0 2.6E-44 5.6E-49 353.6 13.9 218 1-239 361-590 (670)
20 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-42 2.4E-47 317.8 20.7 209 1-229 46-260 (329)
21 PF00225 Kinesin: Kinesin moto 100.0 8.6E-43 1.9E-47 318.4 15.0 214 1-228 42-266 (335)
22 smart00129 KISc Kinesin motor, 100.0 4E-41 8.7E-46 307.8 21.0 213 1-228 47-269 (335)
23 cd00106 KISc Kinesin motor dom 100.0 4.4E-41 9.5E-46 306.4 20.7 211 1-228 46-261 (328)
24 KOG0241|consensus 100.0 6.4E-42 1.4E-46 335.2 11.2 210 1-224 54-284 (1714)
25 KOG0247|consensus 100.0 3.9E-40 8.4E-45 318.3 11.2 209 2-229 83-365 (809)
26 KOG0246|consensus 100.0 1.8E-37 4E-42 293.3 16.0 218 1-239 259-490 (676)
27 COG5059 KIP1 Kinesin-like prot 100.0 6.8E-37 1.5E-41 297.9 12.8 209 1-229 57-268 (568)
28 KOG0244|consensus 100.0 1.4E-33 3E-38 279.0 4.8 209 1-230 33-250 (913)
29 cd01363 Motor_domain Myosin an 99.9 4.3E-23 9.4E-28 174.7 9.9 130 16-229 8-141 (186)
30 PF00308 Bac_DnaA: Bacterial d 94.9 0.021 4.6E-07 49.5 3.0 49 1-51 4-52 (219)
31 PRK06620 hypothetical protein; 93.0 0.066 1.4E-06 46.4 2.3 48 2-52 13-63 (214)
32 PRK06893 DNA replication initi 93.0 0.086 1.9E-06 45.8 3.1 44 2-51 13-57 (229)
33 COG2805 PilT Tfp pilus assembl 91.9 0.068 1.5E-06 49.2 1.1 30 21-50 113-142 (353)
34 COG0556 UvrB Helicase subunit 91.2 0.57 1.2E-05 46.2 6.6 88 2-96 5-97 (663)
35 PRK09087 hypothetical protein; 91.1 0.16 3.4E-06 44.4 2.5 45 2-51 18-62 (226)
36 cd01377 MYSc_type_II Myosin mo 91.0 0.52 1.1E-05 47.9 6.4 37 135-174 139-175 (693)
37 PRK14086 dnaA chromosomal repl 90.8 0.15 3.2E-06 51.0 2.3 49 2-52 285-333 (617)
38 cd01378 MYSc_type_I Myosin mot 90.3 1.4 3E-05 44.8 8.7 21 30-50 83-103 (674)
39 PRK14088 dnaA chromosomal repl 90.2 0.18 3.9E-06 48.4 2.2 48 2-52 102-149 (440)
40 PRK12377 putative replication 90.0 0.3 6.4E-06 43.5 3.3 48 3-52 72-120 (248)
41 PRK05642 DNA replication initi 89.9 0.25 5.4E-06 43.2 2.7 18 34-51 46-63 (234)
42 TIGR02928 orc1/cdc6 family rep 89.8 0.28 6E-06 44.9 3.1 47 4-51 10-58 (365)
43 cd01384 MYSc_type_XI Myosin mo 89.4 0.91 2E-05 46.1 6.6 21 30-50 85-105 (674)
44 PRK08116 hypothetical protein; 89.3 0.29 6.3E-06 43.8 2.7 48 3-51 83-132 (268)
45 PRK00149 dnaA chromosomal repl 89.2 0.24 5.1E-06 47.5 2.2 49 2-52 119-167 (450)
46 cd00124 MYSc Myosin motor doma 89.2 0.82 1.8E-05 46.3 6.1 21 30-50 83-103 (679)
47 PRK08084 DNA replication initi 89.1 0.36 7.8E-06 42.2 3.1 45 2-51 19-63 (235)
48 cd01382 MYSc_type_VI Myosin mo 89.1 0.73 1.6E-05 47.0 5.7 21 30-50 88-108 (717)
49 PRK00411 cdc6 cell division co 89.1 0.36 7.9E-06 44.7 3.3 40 11-51 33-73 (394)
50 cd00009 AAA The AAA+ (ATPases 89.0 0.29 6.3E-06 37.1 2.2 28 23-50 9-36 (151)
51 COG2804 PulE Type II secretory 89.0 0.19 4.1E-06 49.0 1.3 31 21-51 246-276 (500)
52 cd01380 MYSc_type_V Myosin mot 88.7 1.1 2.4E-05 45.5 6.6 37 135-174 130-166 (691)
53 TIGR00362 DnaA chromosomal rep 88.7 0.31 6.7E-06 45.9 2.5 48 2-51 107-154 (405)
54 cd01386 MYSc_type_XVIII Myosin 88.5 0.69 1.5E-05 47.6 5.1 21 30-50 83-103 (767)
55 PRK07952 DNA replication prote 86.7 0.67 1.5E-05 41.1 3.3 48 3-52 70-118 (244)
56 PF04851 ResIII: Type III rest 86.5 0.44 9.6E-06 38.3 2.0 30 23-52 14-44 (184)
57 PRK06526 transposase; Provisio 86.0 0.36 7.8E-06 43.0 1.2 42 35-76 100-143 (254)
58 COG1474 CDC6 Cdc6-related prot 85.8 0.59 1.3E-05 43.9 2.7 27 25-51 33-60 (366)
59 PRK14087 dnaA chromosomal repl 85.7 0.49 1.1E-05 45.6 2.1 49 2-52 112-160 (450)
60 COG0593 DnaA ATPase involved i 85.5 0.48 1E-05 45.2 1.9 67 2-71 84-155 (408)
61 PRK08903 DnaA regulatory inact 83.8 1 2.2E-05 38.6 3.0 45 2-50 15-59 (227)
62 PRK08181 transposase; Validate 82.5 1.3 2.9E-05 39.8 3.3 45 30-76 105-151 (269)
63 PF13245 AAA_19: Part of AAA d 82.5 0.55 1.2E-05 34.0 0.7 25 25-50 3-27 (76)
64 cd00046 DEXDc DEAD-like helica 82.4 0.41 9E-06 35.8 0.0 18 36-53 3-20 (144)
65 PRK06835 DNA replication prote 82.3 1.1 2.4E-05 41.5 2.9 36 15-52 167-202 (329)
66 PF13401 AAA_22: AAA domain; P 82.3 0.38 8.2E-06 37.0 -0.2 18 33-50 4-21 (131)
67 TIGR03420 DnaA_homol_Hda DnaA 81.8 1.3 2.7E-05 37.6 2.8 21 30-50 35-55 (226)
68 PRK08939 primosomal protein Dn 81.7 1.1 2.5E-05 40.9 2.6 41 12-53 135-176 (306)
69 smart00382 AAA ATPases associa 81.4 0.49 1.1E-05 35.3 0.1 18 34-51 3-20 (148)
70 PRK12422 chromosomal replicati 81.2 1.1 2.4E-05 43.1 2.5 48 2-51 108-159 (445)
71 COG1484 DnaC DNA replication p 80.8 1.5 3.3E-05 39.0 3.0 40 10-52 85-124 (254)
72 PRK10436 hypothetical protein; 80.3 0.75 1.6E-05 44.6 1.0 27 25-51 210-236 (462)
73 PF01695 IstB_IS21: IstB-like 80.3 1.2 2.6E-05 37.4 2.1 21 32-52 46-66 (178)
74 PF01935 DUF87: Domain of unkn 79.9 0.6 1.3E-05 40.0 0.2 17 34-50 24-40 (229)
75 PF12846 AAA_10: AAA-like doma 79.6 0.6 1.3E-05 40.7 0.1 19 33-51 1-19 (304)
76 PF01637 Arch_ATPase: Archaeal 79.4 0.82 1.8E-05 38.2 0.9 31 21-51 8-38 (234)
77 PRK08727 hypothetical protein; 79.4 0.72 1.6E-05 40.2 0.5 17 35-51 43-59 (233)
78 TIGR02538 type_IV_pilB type IV 79.3 0.76 1.7E-05 45.5 0.7 28 24-51 307-334 (564)
79 TIGR02533 type_II_gspE general 79.3 0.92 2E-05 44.2 1.3 28 24-51 233-260 (486)
80 PTZ00112 origin recognition co 79.1 1.8 3.9E-05 45.6 3.3 28 23-50 769-798 (1164)
81 PF13604 AAA_30: AAA domain; P 78.9 0.97 2.1E-05 38.4 1.2 27 25-51 10-36 (196)
82 TIGR01420 pilT_fam pilus retra 78.9 0.99 2.1E-05 41.8 1.3 29 23-51 112-140 (343)
83 PF00437 T2SE: Type II/IV secr 78.8 0.87 1.9E-05 40.1 0.9 18 33-50 127-144 (270)
84 PF00004 AAA: ATPase family as 78.8 0.62 1.3E-05 35.5 -0.1 16 36-51 1-16 (132)
85 TIGR02525 plasmid_TraJ plasmid 78.2 1.1 2.4E-05 42.3 1.4 26 24-50 141-166 (372)
86 PF00270 DEAD: DEAD/DEAH box h 78.1 1.1 2.3E-05 35.8 1.2 26 25-52 8-33 (169)
87 PF13479 AAA_24: AAA domain 77.6 0.9 1.9E-05 39.0 0.6 21 33-53 3-23 (213)
88 PF05970 PIF1: PIF1-like helic 77.5 1.4 3.1E-05 41.0 2.0 37 10-50 3-39 (364)
89 cd01131 PilT Pilus retraction 77.3 0.8 1.7E-05 38.8 0.2 18 34-51 2-19 (198)
90 PF13191 AAA_16: AAA ATPase do 76.1 0.87 1.9E-05 36.9 0.1 27 25-51 16-42 (185)
91 TIGR02524 dot_icm_DotB Dot/Icm 75.8 1.4 3E-05 41.3 1.3 23 28-50 129-151 (358)
92 PRK12402 replication factor C 75.6 2 4.3E-05 38.7 2.3 21 31-51 34-54 (337)
93 cd01129 PulE-GspE PulE/GspE Th 75.1 1.4 3E-05 39.3 1.1 27 25-51 72-98 (264)
94 PRK09183 transposase/IS protei 75.0 1.7 3.7E-05 38.7 1.7 18 35-52 104-121 (259)
95 PRK06921 hypothetical protein; 74.5 3.3 7.1E-05 37.1 3.3 32 21-52 102-136 (266)
96 KOG1514|consensus 74.2 5.3 0.00011 40.7 5.0 30 21-50 408-439 (767)
97 COG5008 PilU Tfp pilus assembl 73.9 2.1 4.5E-05 39.3 1.9 31 21-51 115-145 (375)
98 TIGR03015 pepcterm_ATPase puta 72.7 2 4.4E-05 37.4 1.5 23 29-51 39-61 (269)
99 TIGR01242 26Sp45 26S proteasom 72.3 1.4 3.1E-05 40.8 0.5 18 34-51 157-174 (364)
100 KOG0989|consensus 72.3 2.7 5.9E-05 38.9 2.3 37 14-50 37-74 (346)
101 PF07693 KAP_NTPase: KAP famil 72.2 2.6 5.7E-05 37.7 2.2 48 31-78 18-84 (325)
102 PRK03992 proteasome-activating 71.7 1.5 3.3E-05 41.3 0.5 43 34-76 166-222 (389)
103 PF13086 AAA_11: AAA domain; P 71.4 1.5 3.3E-05 36.5 0.5 17 35-51 19-35 (236)
104 PF13207 AAA_17: AAA domain; P 70.7 1.8 4E-05 32.8 0.7 16 35-50 1-16 (121)
105 PF00448 SRP54: SRP54-type pro 70.4 1.5 3.2E-05 37.5 0.1 17 35-51 3-19 (196)
106 TIGR00635 ruvB Holliday juncti 70.3 3.6 7.9E-05 36.7 2.7 41 10-51 6-48 (305)
107 PRK13894 conjugal transfer ATP 70.0 2.8 6E-05 38.7 1.9 27 23-50 139-165 (319)
108 PLN00020 ribulose bisphosphate 69.6 4.8 0.0001 38.4 3.3 76 2-77 112-206 (413)
109 PF00910 RNA_helicase: RNA hel 69.4 1.2 2.6E-05 33.9 -0.6 15 36-50 1-15 (107)
110 PF00580 UvrD-helicase: UvrD/R 69.2 1.8 3.9E-05 38.0 0.4 20 32-51 12-31 (315)
111 PF13671 AAA_33: AAA domain; P 68.7 1.9 4.2E-05 33.5 0.5 16 36-51 2-17 (143)
112 cd01130 VirB11-like_ATPase Typ 68.4 2.9 6.2E-05 34.9 1.5 29 22-51 15-43 (186)
113 PHA00729 NTP-binding motif con 68.1 4.4 9.5E-05 35.7 2.6 30 22-51 6-35 (226)
114 PF03215 Rad17: Rad17 cell cyc 68.0 3.4 7.3E-05 40.7 2.1 31 21-51 31-63 (519)
115 TIGR02782 TrbB_P P-type conjug 67.8 2.4 5.2E-05 38.6 1.0 28 22-50 122-149 (299)
116 PF07724 AAA_2: AAA domain (Cd 67.5 2 4.4E-05 35.8 0.4 17 34-50 4-20 (171)
117 PF02562 PhoH: PhoH-like prote 66.6 3.4 7.3E-05 35.8 1.6 20 32-51 18-37 (205)
118 PF07728 AAA_5: AAA domain (dy 66.3 2.4 5.1E-05 33.2 0.5 15 36-50 2-16 (139)
119 PRK06547 hypothetical protein; 65.1 5.8 0.00013 33.1 2.7 28 23-50 5-32 (172)
120 PRK13900 type IV secretion sys 65.0 4.3 9.4E-05 37.6 2.1 29 22-51 150-178 (332)
121 PF01580 FtsK_SpoIIIE: FtsK/Sp 64.8 2 4.2E-05 36.2 -0.2 16 35-50 40-55 (205)
122 PLN03025 replication factor C 64.7 4.8 0.0001 36.6 2.3 21 31-51 32-52 (319)
123 smart00487 DEXDc DEAD-like hel 64.1 3.9 8.4E-05 32.5 1.4 19 35-53 26-44 (201)
124 PRK12723 flagellar biosynthesi 64.1 6.7 0.00015 37.2 3.2 19 33-51 174-192 (388)
125 PRK00440 rfc replication facto 63.5 5.2 0.00011 35.5 2.3 21 30-50 35-55 (319)
126 KOG0953|consensus 63.2 5.4 0.00012 39.8 2.4 44 35-78 193-239 (700)
127 PF05496 RuvB_N: Holliday junc 62.9 11 0.00023 33.5 4.1 42 8-50 23-67 (233)
128 PF00063 Myosin_head: Myosin h 62.9 5.1 0.00011 40.5 2.3 21 30-50 82-102 (689)
129 PTZ00454 26S protease regulato 62.5 4 8.6E-05 38.8 1.4 64 14-77 155-237 (398)
130 TIGR02881 spore_V_K stage V sp 61.6 3 6.5E-05 36.8 0.3 18 33-50 42-59 (261)
131 KOG0736|consensus 61.4 12 0.00025 39.0 4.4 23 57-79 784-806 (953)
132 PRK04195 replication factor C 60.9 7 0.00015 37.8 2.8 32 20-51 25-57 (482)
133 PRK13833 conjugal transfer pro 60.7 3.8 8.3E-05 37.9 0.9 27 23-50 135-161 (323)
134 PF05673 DUF815: Protein of un 60.6 6 0.00013 35.4 2.1 114 25-171 43-160 (249)
135 PHA02544 44 clamp loader, smal 60.1 6.2 0.00014 35.4 2.1 22 30-51 39-61 (316)
136 PF13238 AAA_18: AAA domain; P 59.8 3.6 7.8E-05 31.0 0.5 15 36-50 1-15 (129)
137 TIGR03499 FlhF flagellar biosy 59.4 3.3 7E-05 37.3 0.2 16 35-50 196-211 (282)
138 PF06414 Zeta_toxin: Zeta toxi 58.6 3.5 7.6E-05 34.7 0.2 20 32-51 14-33 (199)
139 PRK13851 type IV secretion sys 58.4 3.3 7.1E-05 38.6 0.0 28 23-51 153-180 (344)
140 COG1201 Lhr Lhr-like helicases 58.1 8.3 0.00018 40.1 2.8 25 24-50 30-54 (814)
141 PF06309 Torsin: Torsin; Inte 58.1 14 0.0003 29.8 3.5 40 21-73 37-80 (127)
142 PRK04328 hypothetical protein; 57.7 7.4 0.00016 34.2 2.2 27 23-49 10-39 (249)
143 PRK11776 ATP-dependent RNA hel 57.4 7.4 0.00016 37.1 2.3 23 25-49 35-57 (460)
144 COG1219 ClpX ATP-dependent pro 57.4 4.3 9.2E-05 38.1 0.6 17 33-49 97-113 (408)
145 PRK10536 hypothetical protein; 57.2 6.3 0.00014 35.5 1.6 18 34-51 75-92 (262)
146 PF02456 Adeno_IVa2: Adenoviru 57.1 4.3 9.2E-05 37.8 0.5 17 35-51 89-105 (369)
147 PHA02244 ATPase-like protein 57.0 12 0.00026 35.5 3.5 21 28-50 116-136 (383)
148 cd00268 DEADc DEAD-box helicas 56.9 6.8 0.00015 32.4 1.7 24 25-50 30-53 (203)
149 cd01120 RecA-like_NTPases RecA 56.9 3.5 7.5E-05 32.1 -0.1 16 36-51 2-17 (165)
150 smart00242 MYSc Myosin. Large 56.7 9.1 0.0002 38.9 2.9 21 30-50 89-109 (677)
151 PTZ00424 helicase 45; Provisio 56.5 7.7 0.00017 35.9 2.2 26 23-50 57-82 (401)
152 PRK13342 recombination factor 56.5 6.9 0.00015 37.0 1.9 40 11-51 15-54 (413)
153 TIGR02788 VirB11 P-type DNA tr 56.0 9.3 0.0002 34.7 2.6 30 21-51 133-162 (308)
154 PRK00080 ruvB Holliday junctio 55.7 9.6 0.00021 34.7 2.6 41 10-51 27-69 (328)
155 PRK13764 ATPase; Provisional 55.6 5.4 0.00012 40.0 1.0 20 32-51 256-275 (602)
156 PF12775 AAA_7: P-loop contain 54.9 6.4 0.00014 35.3 1.3 19 33-51 33-51 (272)
157 PF10236 DAP3: Mitochondrial r 54.9 8 0.00017 35.3 1.9 29 23-51 13-41 (309)
158 PRK04837 ATP-dependent RNA hel 54.8 7.7 0.00017 36.5 1.9 24 25-50 39-62 (423)
159 PRK14722 flhF flagellar biosyn 54.8 4.4 9.6E-05 38.3 0.2 19 33-51 137-155 (374)
160 cd01123 Rad51_DMC1_radA Rad51_ 54.7 8.8 0.00019 32.7 2.1 28 23-50 6-36 (235)
161 COG1223 Predicted ATPase (AAA+ 54.2 4.7 0.0001 36.9 0.3 45 34-78 152-210 (368)
162 PF05729 NACHT: NACHT domain 54.1 4.7 0.0001 31.7 0.3 16 35-50 2-17 (166)
163 cd01383 MYSc_type_VIII Myosin 53.7 13 0.00029 37.8 3.4 21 30-50 89-109 (677)
164 TIGR02903 spore_lon_C ATP-depe 53.2 9.6 0.00021 38.3 2.4 27 24-50 166-192 (615)
165 KOG3859|consensus 52.9 6.6 0.00014 36.2 1.1 28 23-50 31-59 (406)
166 PF06048 DUF927: Domain of unk 52.6 12 0.00026 33.7 2.7 33 18-51 179-211 (286)
167 cd01381 MYSc_type_VII Myosin m 52.5 14 0.0003 37.6 3.4 21 30-50 83-103 (671)
168 PRK11192 ATP-dependent RNA hel 52.3 10 0.00022 35.8 2.2 24 24-49 31-54 (434)
169 smart00763 AAA_PrkA PrkA AAA d 51.9 47 0.001 31.4 6.5 42 32-73 77-143 (361)
170 cd01385 MYSc_type_IX Myosin mo 51.9 13 0.00029 37.9 3.2 21 30-50 91-111 (692)
171 KOG2543|consensus 51.9 4.8 0.0001 38.4 -0.0 18 34-51 31-48 (438)
172 TIGR01618 phage_P_loop phage n 51.8 5 0.00011 35.1 0.1 21 33-53 12-32 (220)
173 COG1125 OpuBA ABC-type proline 51.8 4.9 0.00011 36.6 0.1 13 39-51 33-45 (309)
174 TIGR00348 hsdR type I site-spe 51.6 10 0.00023 38.3 2.4 32 20-52 246-282 (667)
175 cd01387 MYSc_type_XV Myosin mo 51.6 14 0.00029 37.7 3.1 21 30-50 84-104 (677)
176 KOG0727|consensus 51.6 5.7 0.00012 36.3 0.4 67 13-79 164-249 (408)
177 TIGR00631 uvrb excinuclease AB 51.4 24 0.00051 35.9 4.8 85 5-96 5-94 (655)
178 COG4962 CpaF Flp pilus assembl 51.2 8.4 0.00018 36.1 1.5 24 27-51 168-191 (355)
179 PRK11331 5-methylcytosine-spec 50.8 14 0.0003 35.9 3.0 28 21-50 184-211 (459)
180 PRK11448 hsdR type I restricti 50.8 9 0.00019 41.3 1.8 31 21-52 422-452 (1123)
181 TIGR02237 recomb_radB DNA repa 50.7 9 0.00019 32.1 1.5 19 33-51 12-30 (209)
182 PRK10590 ATP-dependent RNA hel 49.9 12 0.00026 35.8 2.3 25 24-50 31-55 (456)
183 COG1419 FlhF Flagellar GTP-bin 49.4 12 0.00027 35.8 2.3 19 33-51 203-221 (407)
184 PRK10416 signal recognition pa 49.0 15 0.00033 33.8 2.8 18 34-51 115-132 (318)
185 PF00735 Septin: Septin; Inte 49.0 6.6 0.00014 35.5 0.4 21 30-50 1-21 (281)
186 PF13476 AAA_23: AAA domain; P 48.9 6.8 0.00015 31.8 0.4 17 34-50 20-36 (202)
187 PF00931 NB-ARC: NB-ARC domain 48.9 21 0.00045 31.2 3.6 32 20-51 4-37 (287)
188 TIGR02640 gas_vesic_GvpN gas v 48.5 17 0.00037 32.1 3.0 28 21-50 11-38 (262)
189 PRK13341 recombination factor 48.5 11 0.00025 38.6 2.1 22 30-51 49-70 (725)
190 PRK00131 aroK shikimate kinase 48.5 7.8 0.00017 31.0 0.7 17 34-50 5-21 (175)
191 PF13555 AAA_29: P-loop contai 48.3 6.2 0.00014 27.7 0.1 15 36-50 26-40 (62)
192 TIGR02902 spore_lonB ATP-depen 48.3 15 0.00033 36.2 2.8 28 23-50 76-103 (531)
193 cd02021 GntK Gluconate kinase 47.8 7.3 0.00016 30.8 0.5 15 36-50 2-16 (150)
194 PF10923 DUF2791: P-loop Domai 47.2 16 0.00035 35.1 2.7 31 21-51 37-67 (416)
195 TIGR01359 UMP_CMP_kin_fam UMP- 47.0 7.8 0.00017 31.6 0.5 15 36-50 2-16 (183)
196 PRK06067 flagellar accessory p 47.0 13 0.00029 31.9 2.0 28 23-50 12-42 (234)
197 cd00464 SK Shikimate kinase (S 46.9 7.3 0.00016 30.6 0.3 16 35-50 1-16 (154)
198 COG1222 RPT1 ATP-dependent 26S 46.5 8.4 0.00018 36.5 0.7 65 14-78 161-244 (406)
199 TIGR01241 FtsH_fam ATP-depende 46.2 7.9 0.00017 37.5 0.5 17 35-51 90-106 (495)
200 PRK07261 topology modulation p 46.2 8.2 0.00018 31.9 0.5 15 36-50 3-17 (171)
201 PHA02653 RNA helicase NPH-II; 46.1 15 0.00033 37.4 2.5 24 24-49 172-195 (675)
202 TIGR01389 recQ ATP-dependent D 45.8 17 0.00037 36.0 2.8 27 23-51 20-46 (591)
203 COG3842 PotA ABC-type spermidi 45.6 6.8 0.00015 36.8 -0.1 14 38-51 36-49 (352)
204 cd01126 TraG_VirD4 The TraG/Tr 45.6 11 0.00024 35.1 1.3 16 36-51 2-17 (384)
205 cd01124 KaiC KaiC is a circadi 45.6 8.5 0.00019 31.3 0.6 15 36-50 2-16 (187)
206 PRK14974 cell division protein 45.4 24 0.00052 32.8 3.6 19 33-51 140-158 (336)
207 PRK09361 radB DNA repair and r 45.3 18 0.00038 30.8 2.5 30 22-51 9-41 (225)
208 PRK00771 signal recognition pa 45.2 22 0.00047 34.3 3.3 19 33-51 95-113 (437)
209 KOG1547|consensus 45.2 26 0.00056 31.8 3.5 33 18-50 30-63 (336)
210 COG3839 MalK ABC-type sugar tr 45.1 7 0.00015 36.5 -0.0 16 36-51 32-47 (338)
211 PF00158 Sigma54_activat: Sigm 44.8 18 0.00039 30.0 2.4 27 117-143 91-118 (168)
212 KOG0354|consensus 44.8 16 0.00034 37.6 2.4 28 20-50 66-93 (746)
213 KOG0735|consensus 44.7 8.8 0.00019 39.6 0.6 19 32-50 700-718 (952)
214 PRK08118 topology modulation p 44.6 9 0.00019 31.6 0.5 14 36-49 4-17 (167)
215 TIGR01243 CDC48 AAA family ATP 44.6 12 0.00026 38.2 1.5 17 34-50 213-229 (733)
216 CHL00181 cbbX CbbX; Provisiona 44.6 8.8 0.00019 34.7 0.5 15 36-50 62-76 (287)
217 cd01850 CDC_Septin CDC/Septin. 44.4 8.9 0.00019 34.4 0.5 21 30-50 1-21 (276)
218 TIGR01313 therm_gnt_kin carboh 44.4 7.3 0.00016 31.3 -0.0 13 37-49 2-14 (163)
219 TIGR00376 DNA helicase, putati 44.3 13 0.00028 37.6 1.7 18 35-52 175-192 (637)
220 cd00820 PEPCK_HprK Phosphoenol 44.3 8.2 0.00018 30.0 0.2 17 34-50 16-32 (107)
221 PRK05703 flhF flagellar biosyn 44.2 8.1 0.00017 37.0 0.2 17 35-51 223-239 (424)
222 PRK01297 ATP-dependent RNA hel 44.1 18 0.00038 34.7 2.5 26 23-50 116-141 (475)
223 CHL00081 chlI Mg-protoporyphyr 44.1 6.8 0.00015 36.7 -0.3 39 10-52 19-57 (350)
224 PRK11634 ATP-dependent RNA hel 44.1 16 0.00034 36.8 2.3 25 24-50 36-60 (629)
225 PF13173 AAA_14: AAA domain 44.0 8 0.00017 30.1 0.1 16 35-50 4-19 (128)
226 TIGR00614 recQ_fam ATP-depende 44.0 17 0.00037 34.9 2.4 25 24-50 19-43 (470)
227 TIGR02639 ClpA ATP-dependent C 44.0 12 0.00027 38.1 1.5 31 23-53 193-223 (731)
228 PTZ00361 26 proteosome regulat 43.7 7.5 0.00016 37.5 -0.1 16 35-50 219-234 (438)
229 COG0606 Predicted ATPase with 43.5 8.2 0.00018 37.7 0.1 29 30-65 196-224 (490)
230 CHL00176 ftsH cell division pr 43.4 12 0.00026 37.9 1.3 18 34-51 217-234 (638)
231 TIGR02322 phosphon_PhnN phosph 43.1 8.4 0.00018 31.4 0.1 16 35-50 3-18 (179)
232 PRK05580 primosome assembly pr 43.1 12 0.00026 38.0 1.3 18 34-51 163-180 (679)
233 CHL00195 ycf46 Ycf46; Provisio 42.6 8.6 0.00019 37.6 0.1 44 34-77 260-317 (489)
234 TIGR02880 cbbX_cfxQ probable R 42.4 9.8 0.00021 34.2 0.5 16 35-50 60-75 (284)
235 PRK06217 hypothetical protein; 42.4 10 0.00022 31.4 0.5 15 36-50 4-18 (183)
236 PRK11057 ATP-dependent DNA hel 42.3 20 0.00043 35.8 2.7 25 24-50 33-57 (607)
237 PRK10917 ATP-dependent DNA hel 42.0 21 0.00046 36.2 2.9 23 29-51 278-300 (681)
238 PRK06696 uridine kinase; Valid 41.9 27 0.00059 29.9 3.1 30 21-50 7-39 (223)
239 cd01428 ADK Adenylate kinase ( 41.8 10 0.00023 31.0 0.5 15 36-50 2-16 (194)
240 cd01393 recA_like RecA is a b 41.7 21 0.00046 30.1 2.5 30 22-51 5-37 (226)
241 TIGR03877 thermo_KaiC_1 KaiC d 41.3 21 0.00046 30.9 2.4 25 24-48 9-36 (237)
242 PRK11664 ATP-dependent RNA hel 41.2 24 0.00051 36.8 3.1 33 16-51 6-38 (812)
243 TIGR02746 TraC-F-type type-IV 41.1 8.7 0.00019 39.3 -0.1 18 33-50 430-447 (797)
244 PLN00206 DEAD-box ATP-dependen 41.0 25 0.00053 34.4 3.0 23 25-49 152-174 (518)
245 TIGR03744 traC_PFL_4706 conjug 40.9 8.8 0.00019 40.2 -0.1 19 32-50 474-492 (893)
246 PF02534 T4SS-DNA_transf: Type 40.8 18 0.0004 34.4 2.1 19 33-51 44-62 (469)
247 PF14532 Sigma54_activ_2: Sigm 40.6 11 0.00025 29.6 0.5 20 31-50 19-38 (138)
248 PRK14970 DNA polymerase III su 40.6 20 0.00044 33.0 2.3 28 23-50 28-56 (367)
249 PRK04537 ATP-dependent RNA hel 40.5 19 0.00042 35.7 2.3 25 24-50 39-63 (572)
250 PHA01747 putative ATP-dependen 40.3 17 0.00037 34.7 1.7 35 17-51 174-208 (425)
251 smart00488 DEXDc2 DEAD-like he 40.3 22 0.00047 32.1 2.4 29 21-51 17-45 (289)
252 smart00489 DEXDc3 DEAD-like he 40.3 22 0.00047 32.1 2.4 29 21-51 17-45 (289)
253 cd01394 radB RadB. The archaea 40.3 24 0.00052 29.7 2.5 29 23-51 6-37 (218)
254 PF04548 AIG1: AIG1 family; I 40.3 12 0.00026 32.0 0.6 16 35-50 2-17 (212)
255 cd01379 MYSc_type_III Myosin m 40.0 24 0.00052 35.8 2.8 21 30-50 83-103 (653)
256 PRK06995 flhF flagellar biosyn 40.0 10 0.00022 37.2 0.1 18 34-51 257-274 (484)
257 TIGR03689 pup_AAA proteasome A 39.9 11 0.00024 37.1 0.5 16 35-50 218-233 (512)
258 PF12774 AAA_6: Hydrolytic ATP 39.7 19 0.00041 31.6 1.8 41 37-77 36-84 (231)
259 KOG2373|consensus 39.6 30 0.00065 33.0 3.2 29 23-52 261-292 (514)
260 PF08477 Miro: Miro-like prote 39.6 13 0.00029 27.6 0.8 15 36-50 2-16 (119)
261 PRK14961 DNA polymerase III su 39.4 24 0.00051 32.8 2.5 36 11-50 19-55 (363)
262 TIGR03158 cas3_cyano CRISPR-as 39.4 22 0.00049 32.9 2.4 25 26-50 7-31 (357)
263 KOG1803|consensus 39.2 12 0.00026 37.5 0.6 17 35-51 203-219 (649)
264 PF08298 AAA_PrkA: PrkA AAA do 38.8 67 0.0015 30.3 5.4 50 24-73 76-143 (358)
265 PRK08233 hypothetical protein; 38.8 12 0.00027 30.2 0.5 15 36-50 6-20 (182)
266 TIGR03881 KaiC_arch_4 KaiC dom 38.8 22 0.00048 30.2 2.1 27 24-50 8-37 (229)
267 TIGR01360 aden_kin_iso1 adenyl 38.7 13 0.00028 30.3 0.6 16 35-50 5-20 (188)
268 PRK15455 PrkA family serine pr 38.7 90 0.002 31.7 6.5 38 10-47 78-117 (644)
269 PHA02624 large T antigen; Prov 38.6 26 0.00056 35.5 2.8 27 24-50 420-448 (647)
270 PF12444 Sox_N: Sox developmen 38.6 23 0.0005 26.5 1.8 27 12-38 53-79 (84)
271 KOG0739|consensus 38.2 13 0.00028 34.8 0.6 64 16-79 145-226 (439)
272 TIGR00643 recG ATP-dependent D 38.1 26 0.00056 35.2 2.7 20 32-51 255-274 (630)
273 COG5019 CDC3 Septin family pro 38.0 19 0.0004 34.1 1.6 22 29-50 19-40 (373)
274 PRK09270 nucleoside triphospha 37.9 42 0.00092 28.8 3.8 18 33-50 33-50 (229)
275 cd02020 CMPK Cytidine monophos 37.9 15 0.00032 28.5 0.8 15 36-50 2-16 (147)
276 TIGR00602 rad24 checkpoint pro 37.7 20 0.00043 36.3 1.9 17 35-51 112-128 (637)
277 PRK05342 clpX ATP-dependent pr 37.7 14 0.0003 35.4 0.7 18 33-50 108-125 (412)
278 TIGR03819 heli_sec_ATPase heli 37.6 16 0.00035 33.9 1.2 30 21-51 167-196 (340)
279 cd01127 TrwB Bacterial conjuga 37.6 11 0.00023 35.7 -0.0 18 33-50 42-59 (410)
280 COG3829 RocR Transcriptional r 37.6 21 0.00045 35.5 1.9 19 28-46 263-281 (560)
281 KOG0729|consensus 37.5 15 0.00034 33.8 0.9 47 31-77 207-269 (435)
282 PRK15429 formate hydrogenlyase 37.4 18 0.00039 36.6 1.5 21 30-50 396-416 (686)
283 TIGR02173 cyt_kin_arch cytidyl 37.4 14 0.00029 29.6 0.5 17 35-51 2-18 (171)
284 PF00025 Arf: ADP-ribosylation 37.3 24 0.00052 28.9 2.0 28 23-50 3-31 (175)
285 PRK14531 adenylate kinase; Pro 37.2 14 0.0003 30.6 0.5 16 35-50 4-19 (183)
286 cd02023 UMPK Uridine monophosp 37.1 11 0.00024 31.4 -0.1 14 37-50 3-16 (198)
287 PF06745 KaiC: KaiC; InterPro 37.0 16 0.00035 31.1 0.9 26 25-50 8-36 (226)
288 PRK04040 adenylate kinase; Pro 36.9 14 0.0003 31.2 0.5 16 35-50 4-19 (188)
289 TIGR02236 recomb_radA DNA repa 36.8 27 0.00059 31.4 2.5 28 23-50 82-112 (310)
290 PRK10865 protein disaggregatio 36.7 28 0.00062 36.4 2.9 17 34-50 599-615 (857)
291 PRK14532 adenylate kinase; Pro 36.7 16 0.00034 30.2 0.8 16 35-50 2-17 (188)
292 cd02025 PanK Pantothenate kina 36.6 9.4 0.0002 33.0 -0.6 12 39-50 5-16 (220)
293 KOG0330|consensus 36.6 21 0.00046 34.3 1.7 25 24-50 91-115 (476)
294 TIGR00231 small_GTP small GTP- 36.6 11 0.00024 28.4 -0.1 17 35-51 3-19 (161)
295 PRK12726 flagellar biosynthesi 36.3 13 0.00027 35.7 0.2 18 34-51 207-224 (407)
296 PTZ00014 myosin-A; Provisional 35.9 33 0.00072 35.8 3.2 21 30-50 180-200 (821)
297 TIGR02397 dnaX_nterm DNA polym 35.8 29 0.00063 31.4 2.5 37 10-50 16-53 (355)
298 TIGR03263 guanyl_kin guanylate 35.8 18 0.00039 29.4 1.0 16 35-50 3-18 (180)
299 TIGR01817 nifA Nif-specific re 35.6 20 0.00043 35.1 1.4 20 31-50 217-236 (534)
300 PRK11034 clpA ATP-dependent Cl 35.6 37 0.0008 35.1 3.4 17 34-50 489-505 (758)
301 TIGR03817 DECH_helic helicase/ 35.6 29 0.00063 35.7 2.7 25 24-50 44-68 (742)
302 TIGR00064 ftsY signal recognit 35.5 13 0.00028 33.4 0.1 18 34-51 73-90 (272)
303 PRK13767 ATP-dependent helicas 35.5 29 0.00063 36.3 2.7 24 25-50 41-64 (876)
304 TIGR03238 dnd_assoc_3 dnd syst 35.3 23 0.00051 34.8 1.8 30 22-51 15-50 (504)
305 PRK06762 hypothetical protein; 35.2 17 0.00036 29.3 0.7 14 35-48 4-17 (166)
306 PRK15424 propionate catabolism 35.1 21 0.00045 35.4 1.5 22 29-50 238-259 (538)
307 PRK12724 flagellar biosynthesi 34.9 35 0.00075 33.0 2.9 18 34-51 224-241 (432)
308 COG1136 SalX ABC-type antimicr 34.9 12 0.00027 32.9 -0.1 16 36-51 34-49 (226)
309 PF02367 UPF0079: Uncharacteri 34.8 38 0.00082 26.9 2.7 18 34-51 16-33 (123)
310 PRK14721 flhF flagellar biosyn 34.6 13 0.00028 35.7 -0.0 18 34-51 192-209 (420)
311 KOG0652|consensus 34.5 17 0.00037 33.4 0.7 17 35-51 207-223 (424)
312 PF00485 PRK: Phosphoribulokin 34.3 16 0.00034 30.5 0.5 15 36-50 2-16 (194)
313 PRK03839 putative kinase; Prov 34.3 16 0.00035 29.9 0.5 14 36-49 3-16 (180)
314 TIGR02329 propionate_PrpR prop 34.2 21 0.00045 35.3 1.3 22 29-50 231-252 (526)
315 PRK14962 DNA polymerase III su 34.1 29 0.00063 33.8 2.3 38 10-51 16-54 (472)
316 TIGR00929 VirB4_CagE type IV s 33.9 14 0.0003 37.6 0.1 18 33-50 434-451 (785)
317 TIGR00382 clpX endopeptidase C 33.8 17 0.00038 34.8 0.7 17 34-50 117-133 (413)
318 PRK11889 flhF flagellar biosyn 33.6 14 0.00031 35.6 0.1 18 34-51 242-259 (436)
319 TIGR02639 ClpA ATP-dependent C 33.4 38 0.00081 34.7 3.1 17 34-50 485-501 (731)
320 PRK10820 DNA-binding transcrip 33.3 22 0.00048 34.9 1.3 21 30-50 224-244 (520)
321 cd03274 ABC_SMC4_euk Eukaryoti 33.1 15 0.00033 31.4 0.2 16 36-51 28-43 (212)
322 TIGR01243 CDC48 AAA family ATP 33.0 18 0.00039 36.9 0.7 44 34-77 488-545 (733)
323 PRK00300 gmk guanylate kinase; 33.0 21 0.00045 29.7 1.0 16 34-49 6-21 (205)
324 KOG0745|consensus 32.8 18 0.00039 35.3 0.6 16 34-49 227-242 (564)
325 COG4525 TauB ABC-type taurine 32.6 20 0.00043 31.7 0.8 17 35-51 33-49 (259)
326 TIGR00763 lon ATP-dependent pr 32.6 45 0.00098 34.4 3.5 16 35-50 349-364 (775)
327 cd00071 GMPK Guanosine monopho 32.5 20 0.00043 28.5 0.7 15 36-50 2-16 (137)
328 PRK01172 ski2-like helicase; P 32.5 30 0.00064 34.9 2.1 23 25-49 31-53 (674)
329 KOG1532|consensus 32.4 27 0.00059 32.2 1.7 18 33-50 19-36 (366)
330 PRK11131 ATP-dependent RNA hel 32.4 39 0.00086 37.1 3.1 23 27-50 84-106 (1294)
331 cd03240 ABC_Rad50 The catalyti 32.3 16 0.00034 31.1 0.1 17 35-51 24-40 (204)
332 TIGR03878 thermo_KaiC_2 KaiC d 32.3 22 0.00048 31.4 1.1 16 33-48 36-51 (259)
333 PLN03137 ATP-dependent DNA hel 32.3 35 0.00076 37.0 2.7 26 23-50 467-492 (1195)
334 PRK14729 miaA tRNA delta(2)-is 32.2 20 0.00043 32.9 0.8 16 35-50 6-21 (300)
335 PRK10867 signal recognition pa 32.2 50 0.0011 31.9 3.5 18 34-51 101-118 (433)
336 COG1126 GlnQ ABC-type polar am 32.1 22 0.00047 31.6 1.0 23 28-50 17-45 (240)
337 cd02027 APSK Adenosine 5'-phos 31.9 17 0.00037 29.2 0.3 15 36-50 2-16 (149)
338 TIGR02655 circ_KaiC circadian 31.9 32 0.0007 33.3 2.2 27 23-49 8-37 (484)
339 TIGR03880 KaiC_arch_3 KaiC dom 31.8 34 0.00075 29.0 2.2 26 25-50 5-33 (224)
340 PRK14723 flhF flagellar biosyn 31.8 17 0.00036 37.7 0.2 18 34-51 186-203 (767)
341 PRK14527 adenylate kinase; Pro 31.7 21 0.00045 29.7 0.8 17 34-50 7-23 (191)
342 PRK11034 clpA ATP-dependent Cl 31.5 22 0.00047 36.8 1.0 20 33-52 207-226 (758)
343 PTZ00110 helicase; Provisional 31.4 31 0.00068 34.0 2.1 24 25-50 161-184 (545)
344 TIGR02238 recomb_DMC1 meiotic 31.3 42 0.0009 30.8 2.7 29 22-50 82-113 (313)
345 KOG0922|consensus 31.3 44 0.00096 34.0 3.1 19 33-51 66-84 (674)
346 PRK09302 circadian clock prote 31.1 34 0.00073 33.2 2.2 28 23-50 18-48 (509)
347 PRK10078 ribose 1,5-bisphospho 31.1 23 0.0005 29.3 1.0 16 35-50 4-19 (186)
348 TIGR00235 udk uridine kinase. 31.0 19 0.00042 30.3 0.5 16 35-50 8-23 (207)
349 PRK11545 gntK gluconate kinase 30.9 16 0.00036 29.8 0.0 13 39-51 1-13 (163)
350 PRK14530 adenylate kinase; Pro 30.7 20 0.00043 30.4 0.5 16 35-50 5-20 (215)
351 TIGR02688 conserved hypothetic 30.6 37 0.0008 33.0 2.3 51 23-76 201-252 (449)
352 COG0464 SpoVK ATPases of the A 30.5 29 0.00063 33.4 1.7 48 31-78 274-335 (494)
353 PRK13889 conjugal transfer rel 30.5 28 0.00061 37.1 1.6 27 24-51 354-380 (988)
354 cd01853 Toc34_like Toc34-like 30.4 20 0.00043 31.7 0.5 20 31-50 29-48 (249)
355 cd03279 ABC_sbcCD SbcCD and ot 30.3 18 0.0004 30.7 0.2 17 35-51 30-46 (213)
356 TIGR01351 adk adenylate kinase 30.2 21 0.00045 30.2 0.5 35 36-73 2-36 (210)
357 COG0563 Adk Adenylate kinase a 30.1 22 0.00047 29.9 0.6 14 36-49 3-16 (178)
358 PRK04301 radA DNA repair and r 29.9 42 0.0009 30.5 2.5 29 23-51 89-120 (317)
359 PF09439 SRPRB: Signal recogni 29.8 25 0.00054 29.8 1.0 17 34-50 4-20 (181)
360 KOG0340|consensus 29.7 32 0.00069 32.8 1.7 29 23-53 36-64 (442)
361 COG1122 CbiO ABC-type cobalt t 29.7 25 0.00055 31.0 1.0 17 35-51 32-48 (235)
362 PRK08533 flagellar accessory p 29.7 24 0.00052 30.7 0.8 17 34-50 25-41 (230)
363 TIGR02012 tigrfam_recA protein 29.6 42 0.00091 31.1 2.4 31 20-50 38-72 (321)
364 cd02019 NK Nucleoside/nucleoti 29.5 25 0.00054 24.4 0.7 14 37-50 3-16 (69)
365 cd00983 recA RecA is a bacter 29.5 44 0.00095 31.0 2.6 32 20-51 38-73 (325)
366 TIGR01970 DEAH_box_HrpB ATP-de 29.5 37 0.00079 35.5 2.2 29 21-51 7-35 (819)
367 PRK06851 hypothetical protein; 29.4 26 0.00057 33.0 1.1 27 24-50 21-47 (367)
368 PF02463 SMC_N: RecF/RecN/SMC 29.3 26 0.00056 29.6 1.0 16 35-50 26-41 (220)
369 PF10412 TrwB_AAD_bind: Type I 29.3 17 0.00036 34.2 -0.2 16 35-50 17-32 (386)
370 PHA02530 pseT polynucleotide k 29.3 23 0.00051 31.3 0.7 16 35-50 4-19 (300)
371 PTZ00301 uridine kinase; Provi 29.1 18 0.0004 31.2 -0.0 13 38-50 8-20 (210)
372 TIGR01650 PD_CobS cobaltochela 28.9 30 0.00065 32.2 1.4 18 33-50 64-81 (327)
373 PF00005 ABC_tran: ABC transpo 28.9 27 0.00059 26.8 1.0 16 35-50 13-28 (137)
374 cd01983 Fer4_NifH The Fer4_Nif 28.9 20 0.00044 25.0 0.2 15 36-50 2-16 (99)
375 KOG0741|consensus 28.8 26 0.00057 35.1 1.0 15 35-49 258-272 (744)
376 TIGR01587 cas3_core CRISPR-ass 28.7 25 0.00053 32.0 0.8 15 36-50 2-16 (358)
377 PRK14963 DNA polymerase III su 28.6 38 0.00082 33.3 2.1 37 10-50 16-53 (504)
378 KOG1970|consensus 28.5 25 0.00054 35.2 0.8 16 36-51 113-128 (634)
379 KOG0926|consensus 28.5 29 0.00063 36.4 1.3 23 126-148 482-504 (1172)
380 PRK02496 adk adenylate kinase; 28.5 23 0.00051 29.0 0.5 15 36-50 4-18 (184)
381 PRK13531 regulatory ATPase Rav 28.4 42 0.00092 33.0 2.3 28 21-50 29-56 (498)
382 PF01926 MMR_HSR1: 50S ribosom 28.3 26 0.00056 26.2 0.7 15 36-50 2-16 (116)
383 TIGR01074 rep ATP-dependent DN 28.3 22 0.00048 35.6 0.4 20 33-52 14-33 (664)
384 CHL00095 clpC Clp protease ATP 28.3 30 0.00065 35.9 1.4 22 32-53 199-220 (821)
385 KOG0335|consensus 28.2 25 0.00053 34.5 0.7 105 27-140 107-240 (482)
386 TIGR00390 hslU ATP-dependent p 28.2 24 0.00051 34.2 0.6 18 34-51 48-65 (441)
387 COG0630 VirB11 Type IV secreto 28.1 19 0.0004 33.1 -0.1 17 35-51 145-161 (312)
388 PRK05480 uridine/cytidine kina 28.1 24 0.00051 29.7 0.5 16 35-50 8-23 (209)
389 COG0467 RAD55 RecA-superfamily 28.0 29 0.00063 30.3 1.1 25 25-49 12-39 (260)
390 PRK13721 conjugal transfer ATP 28.0 20 0.00042 37.4 -0.0 19 33-51 449-467 (844)
391 TIGR00580 mfd transcription-re 27.9 44 0.00096 35.4 2.6 31 20-50 459-489 (926)
392 COG2256 MGS1 ATPase related to 27.9 33 0.00071 33.1 1.4 38 11-49 27-64 (436)
393 PF03969 AFG1_ATPase: AFG1-lik 27.8 21 0.00045 33.5 0.1 45 34-78 63-111 (362)
394 PRK09354 recA recombinase A; P 27.8 49 0.0011 31.1 2.6 32 20-51 43-78 (349)
395 TIGR01425 SRP54_euk signal rec 27.8 67 0.0015 31.0 3.6 18 34-51 101-118 (429)
396 PLN03187 meiotic recombination 27.8 47 0.001 31.0 2.5 30 21-50 111-143 (344)
397 KOG0730|consensus 27.6 26 0.00057 35.6 0.8 45 34-78 469-527 (693)
398 KOG2035|consensus 27.4 47 0.001 30.8 2.3 35 16-50 16-51 (351)
399 cd03272 ABC_SMC3_euk Eukaryoti 27.4 22 0.00047 30.5 0.1 16 35-50 25-40 (243)
400 KOG1534|consensus 27.4 32 0.00069 30.6 1.2 15 35-49 5-19 (273)
401 KOG0987|consensus 27.3 46 0.00099 32.9 2.4 36 10-50 119-154 (540)
402 PF01745 IPT: Isopentenyl tran 27.1 25 0.00054 31.1 0.5 15 36-50 4-18 (233)
403 PRK09825 idnK D-gluconate kina 27.0 28 0.0006 28.9 0.7 16 35-50 5-20 (176)
404 TIGR03345 VI_ClpV1 type VI sec 26.9 70 0.0015 33.6 3.8 36 12-48 570-611 (852)
405 cd03238 ABC_UvrA The excision 26.9 21 0.00044 29.9 -0.1 15 36-50 24-38 (176)
406 KOG2655|consensus 26.9 42 0.00092 31.7 2.0 23 27-49 15-37 (366)
407 cd03115 SRP The signal recogni 26.8 23 0.00049 28.7 0.2 15 36-50 3-17 (173)
408 PRK13873 conjugal transfer ATP 26.7 24 0.00053 36.5 0.4 16 35-50 443-458 (811)
409 PRK14528 adenylate kinase; Pro 26.5 27 0.00058 29.1 0.5 17 35-51 3-19 (186)
410 COG0324 MiaA tRNA delta(2)-iso 26.5 29 0.00062 32.1 0.8 16 35-50 5-20 (308)
411 PRK10865 protein disaggregatio 26.3 36 0.00078 35.6 1.6 32 21-52 187-218 (857)
412 KOG0348|consensus 26.2 43 0.00092 33.6 1.9 63 24-90 167-245 (708)
413 PRK13891 conjugal transfer pro 26.2 23 0.0005 37.0 0.1 18 33-50 488-505 (852)
414 TIGR02768 TraA_Ti Ti-type conj 26.1 35 0.00077 35.1 1.4 27 25-52 361-387 (744)
415 PRK00279 adk adenylate kinase; 26.1 30 0.00065 29.3 0.8 14 36-49 3-16 (215)
416 cd00544 CobU Adenosylcobinamid 26.0 30 0.00065 28.7 0.8 14 36-49 2-15 (169)
417 PF01443 Viral_helicase1: Vira 26.0 18 0.00039 30.5 -0.6 15 37-51 2-16 (234)
418 KOG0328|consensus 25.9 49 0.0011 30.7 2.1 26 24-51 57-82 (400)
419 PRK05541 adenylylsulfate kinas 25.9 30 0.00064 28.2 0.7 16 35-50 9-24 (176)
420 KOG2228|consensus 25.8 91 0.002 29.6 3.9 67 26-95 42-121 (408)
421 PF13481 AAA_25: AAA domain; P 25.7 28 0.0006 28.5 0.5 28 23-50 19-49 (193)
422 PRK06645 DNA polymerase III su 25.7 53 0.0012 32.3 2.5 37 10-50 23-60 (507)
423 PHA02774 E1; Provisional 25.7 46 0.00099 33.6 2.1 25 26-50 425-451 (613)
424 TIGR03346 chaperone_ClpB ATP-d 25.7 37 0.00081 35.4 1.5 32 21-52 182-213 (852)
425 PRK11784 tRNA 2-selenouridine 25.7 42 0.00091 31.3 1.7 32 18-50 127-158 (345)
426 PF13304 AAA_21: AAA domain; P 25.7 23 0.0005 28.8 0.0 14 38-51 4-17 (303)
427 PRK09401 reverse gyrase; Revie 25.6 54 0.0012 35.7 2.7 24 24-49 88-111 (1176)
428 KOG0726|consensus 25.5 25 0.00055 32.8 0.2 45 35-79 221-279 (440)
429 PRK05057 aroK shikimate kinase 25.5 34 0.00073 28.2 1.0 17 35-51 6-22 (172)
430 COG1131 CcmA ABC-type multidru 25.5 19 0.00041 32.5 -0.6 14 38-51 36-49 (293)
431 COG1137 YhbG ABC-type (unclass 25.3 35 0.00077 30.1 1.1 14 38-51 35-48 (243)
432 cd02028 UMPK_like Uridine mono 25.3 28 0.00061 28.9 0.5 15 36-50 2-16 (179)
433 cd00227 CPT Chloramphenicol (C 25.3 31 0.00068 28.1 0.7 16 35-50 4-19 (175)
434 PRK00091 miaA tRNA delta(2)-is 25.2 31 0.00067 31.6 0.8 16 35-50 6-21 (307)
435 PRK05022 anaerobic nitric oxid 25.2 38 0.00083 33.0 1.4 22 29-50 206-227 (509)
436 COG4096 HsdR Type I site-speci 25.1 76 0.0016 33.3 3.5 31 20-51 173-203 (875)
437 KOG0742|consensus 25.1 32 0.0007 33.5 0.9 21 123-143 505-525 (630)
438 cd01860 Rab5_related Rab5-rela 25.0 39 0.00084 26.3 1.2 17 34-50 2-18 (163)
439 PRK13947 shikimate kinase; Pro 24.9 32 0.00069 27.6 0.7 16 35-50 3-18 (171)
440 cd04139 RalA_RalB RalA/RalB su 24.7 33 0.00071 26.6 0.7 15 36-50 3-17 (164)
441 PF01078 Mg_chelatase: Magnesi 24.7 53 0.0011 28.6 2.0 17 34-50 23-39 (206)
442 KOG0743|consensus 24.7 29 0.00064 33.7 0.5 14 37-50 239-252 (457)
443 TIGR00554 panK_bact pantothena 24.7 20 0.00043 32.7 -0.6 16 35-50 64-79 (290)
444 cd01864 Rab19 Rab19 subfamily. 24.7 40 0.00086 26.6 1.2 17 34-50 4-20 (165)
445 PRK12727 flagellar biosynthesi 24.7 26 0.00056 34.9 0.2 18 34-51 351-368 (559)
446 cd00876 Ras Ras family. The R 24.6 33 0.00071 26.4 0.7 15 36-50 2-16 (160)
447 PRK05800 cobU adenosylcobinami 24.5 33 0.00071 28.5 0.7 15 35-49 3-17 (170)
448 PRK04296 thymidine kinase; Pro 24.4 25 0.00053 29.5 -0.1 16 35-50 4-19 (190)
449 cd01876 YihA_EngB The YihA (En 24.3 24 0.00052 27.2 -0.1 16 36-51 2-17 (170)
450 TIGR00174 miaA tRNA isopenteny 24.3 33 0.00072 31.2 0.8 15 36-50 2-16 (287)
451 TIGR03346 chaperone_ClpB ATP-d 24.2 70 0.0015 33.4 3.2 18 33-50 595-612 (852)
452 PF03193 DUF258: Protein of un 24.1 49 0.0011 27.5 1.7 24 25-50 29-52 (161)
453 PRK13949 shikimate kinase; Pro 24.1 31 0.00068 28.4 0.5 16 35-50 3-18 (169)
454 TIGR03574 selen_PSTK L-seryl-t 24.0 30 0.00066 30.0 0.5 16 36-51 2-17 (249)
455 TIGR03117 cas_csf4 CRISPR-asso 24.0 58 0.0013 33.1 2.5 33 13-51 2-34 (636)
456 PF04670 Gtr1_RagA: Gtr1/RagA 24.0 34 0.00073 30.1 0.7 14 36-49 2-15 (232)
457 PRK01184 hypothetical protein; 23.9 31 0.00068 28.2 0.5 15 35-49 3-17 (184)
458 COG1198 PriA Primosomal protei 23.8 55 0.0012 33.8 2.3 45 30-75 215-270 (730)
459 PRK15483 type III restriction- 23.8 37 0.00079 36.2 1.0 15 39-53 65-79 (986)
460 PRK05416 glmZ(sRNA)-inactivati 23.7 25 0.00055 31.9 -0.1 17 35-51 8-24 (288)
461 PF03029 ATP_bind_1: Conserved 23.7 26 0.00056 30.8 -0.0 12 39-50 2-13 (238)
462 TIGR01967 DEAH_box_HrpA ATP-de 23.7 69 0.0015 35.2 3.1 22 28-50 78-99 (1283)
463 PLN02165 adenylate isopentenyl 23.5 37 0.0008 31.7 0.9 16 35-50 45-60 (334)
464 PRK13880 conjugal transfer cou 23.5 44 0.00095 33.8 1.5 18 34-51 176-193 (636)
465 PLN02200 adenylate kinase fami 23.4 36 0.00077 29.7 0.8 37 34-73 44-80 (234)
466 PRK13946 shikimate kinase; Pro 23.3 34 0.00075 28.3 0.6 17 34-50 11-27 (184)
467 TIGR03783 Bac_Flav_CT_G Bacter 23.3 26 0.00055 36.6 -0.2 18 33-50 438-455 (829)
468 TIGR02030 BchI-ChlI magnesium 23.2 61 0.0013 30.1 2.3 39 10-52 6-44 (337)
469 COG1702 PhoH Phosphate starvat 23.1 39 0.00085 31.7 1.0 19 33-51 143-161 (348)
470 PRK04182 cytidylate kinase; Pr 23.1 37 0.00079 27.2 0.7 15 36-50 3-17 (180)
471 COG0513 SrmB Superfamily II DN 23.1 47 0.001 32.5 1.6 26 23-50 58-83 (513)
472 cd03278 ABC_SMC_barmotin Barmo 23.0 27 0.00058 29.5 -0.1 16 36-51 25-40 (197)
473 PRK00454 engB GTP-binding prot 23.0 45 0.00098 27.0 1.3 29 23-51 14-42 (196)
474 PTZ00035 Rad51 protein; Provis 23.0 69 0.0015 29.7 2.6 30 21-50 103-135 (337)
475 cd04163 Era Era subfamily. Er 22.9 42 0.0009 25.6 1.0 16 35-50 5-20 (168)
476 COG4185 Uncharacterized protei 22.9 48 0.001 28.2 1.4 14 36-50 6-19 (187)
477 TIGR01613 primase_Cterm phage/ 22.9 40 0.00087 30.3 1.0 30 21-50 61-93 (304)
478 TIGR02858 spore_III_AA stage I 22.8 29 0.00064 31.2 0.1 18 34-51 112-129 (270)
479 TIGR00678 holB DNA polymerase 22.7 69 0.0015 26.3 2.4 24 27-50 7-31 (188)
480 PRK11388 DNA-binding transcrip 22.7 45 0.00097 33.3 1.4 20 31-50 346-365 (638)
481 COG1118 CysA ABC-type sulfate/ 22.6 29 0.00062 32.4 0.0 16 36-51 31-46 (345)
482 smart00175 RAB Rab subfamily o 22.6 38 0.00083 26.3 0.7 15 36-50 3-17 (164)
483 cd04164 trmE TrmE (MnmE, ThdF, 22.6 28 0.00061 26.6 -0.1 16 35-50 3-18 (157)
484 PRK03731 aroL shikimate kinase 22.5 37 0.00081 27.3 0.7 16 35-50 4-19 (171)
485 PRK06851 hypothetical protein; 22.5 46 0.00099 31.4 1.4 27 24-50 205-231 (367)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 22.5 30 0.00066 29.1 0.1 15 36-50 33-47 (218)
487 PRK13853 type IV secretion sys 22.4 33 0.00071 35.5 0.4 19 33-51 426-444 (789)
488 PRK05201 hslU ATP-dependent pr 22.3 36 0.00079 33.0 0.6 16 34-49 51-66 (443)
489 TIGR03265 PhnT2 putative 2-ami 22.3 31 0.00066 32.1 0.1 16 36-51 33-48 (353)
490 KOG0924|consensus 22.2 44 0.00096 34.6 1.2 21 31-51 369-389 (1042)
491 COG5022 Myosin heavy chain [Cy 22.2 87 0.0019 34.7 3.4 20 30-49 149-168 (1463)
492 PRK14955 DNA polymerase III su 22.1 83 0.0018 29.6 3.0 22 28-49 32-54 (397)
493 PRK11608 pspF phage shock prot 22.1 46 0.001 30.5 1.3 20 31-50 27-46 (326)
494 PRK14964 DNA polymerase III su 22.1 69 0.0015 31.5 2.5 24 27-50 28-52 (491)
495 PRK13830 conjugal transfer pro 22.1 31 0.00068 35.9 0.2 18 33-50 456-473 (818)
496 TIGR00595 priA primosomal prot 22.0 31 0.00067 33.8 0.1 14 38-51 2-15 (505)
497 TIGR01447 recD exodeoxyribonuc 22.0 30 0.00064 34.7 -0.0 18 34-51 161-178 (586)
498 KOG0734|consensus 22.0 84 0.0018 31.8 3.0 44 35-78 339-396 (752)
499 cd04159 Arl10_like Arl10-like 21.8 41 0.00088 25.6 0.7 16 36-51 2-17 (159)
500 cd03258 ABC_MetN_methionine_tr 21.8 32 0.00069 29.3 0.1 15 36-50 34-48 (233)
No 1
>KOG4280|consensus
Probab=100.00 E-value=9.4e-52 Score=396.47 Aligned_cols=214 Identities=30% Similarity=0.429 Sum_probs=185.2
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|+||.||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++ +...|||||++++||..|+..++
T Consensus 53 ~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~--~~~~GiiPraf~~LF~~I~~~~~ 130 (574)
T KOG4280|consen 53 SFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD--PELRGLIPRAFEHLFRHIDERKE 130 (574)
T ss_pred CceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC--hhhCCchhHHHHHHHHHHHhccc
Confidence 599999999 999999999999999999999999999999999999999999994 56899999999999999999875
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND 157 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~ 157 (241)
. .+|.|+|||+||| ||+|+|||++.. +.+.++++|+.|+||+|++++.|.+++++..+|. |..+|++++|.||.
T Consensus 131 ~--~~f~vrvS~lEiY--nE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~ 206 (574)
T KOG4280|consen 131 K--TRFLVRVSYLEIY--NESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNE 206 (574)
T ss_pred c--ceEEEEeehHHHH--hHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCc
Confidence 4 3899999999999 999999999987 5889999999999999999999999999999999 99999999999999
Q ss_pred CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852 158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 228 (241)
.||| ||+..+.. ..+.+...+++ .|.|+ =+||||||||.|++ ..+++.+|.+|+.|+..=.+|
T Consensus 207 ~SsRSH~ift~~i~~~--~~~~~~~~~~~----~~rln--lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aL 278 (574)
T KOG4280|consen 207 ESSRSHAIFTIHIESS--EKSDGGLMSGR----SSKLN--LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISAL 278 (574)
T ss_pred ccccceEEEEEEEEee--cccCCCccccc----cceee--eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHH
Confidence 9999 77776661 22222333333 11233 37999999999997 677777777777777654443
No 2
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.5e-48 Score=355.90 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=172.6
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC-----CCCCCchHHHHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS-----SATLGVIPSAISWLFRCI 74 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~-----~~~~GIipr~~~~LF~~i 74 (241)
.|.||+||+ +++|++||+.++.|+|+.+++|||+||||||||||||||||+|+... ..++|||||++++||+.+
T Consensus 42 ~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i 121 (337)
T cd01373 42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLI 121 (337)
T ss_pred EEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHH
Confidence 499999999 99999999999999999999999999999999999999999998753 247899999999999998
Q ss_pred Hhccc--CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcc
Q psy9852 75 SEQKH--KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLI 151 (241)
Q Consensus 75 ~~~~~--~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~ 151 (241)
+.... ..+..|.|.|||+||| ||+|+|||++....+.+++++.++++++|++++.|.|++|+.++|+ |.++|+++
T Consensus 122 ~~~~~~~~~~~~~~v~~S~~EIy--ne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 199 (337)
T cd01373 122 QREEEKRGDGLKFLCKCSFLEIY--NEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVA 199 (337)
T ss_pred HhhhhhcccCceEEEEEEEEeec--CCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcc
Confidence 76532 1346899999999999 9999999999888899999999999999999999999999999999 99999999
Q ss_pred ccCCCCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852 152 SNKRNDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 152 ~T~~N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
+|.+|+.||| +.++...+............+ -|.|. -+||||||+..+++ ..+.|+.|.+.||+||
T Consensus 200 ~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~----~s~l~--~VDLAGSEr~~~~~-----~~g~~~~E~~~IN~SL 266 (337)
T cd01373 200 ATSMNSESSRSHAVFTCTIESWEKKASSTNIR----TSRLN--LVDLAGSERQKDDG-----AEGVRLKEAKNINKSL 266 (337)
T ss_pred cCcCCCCCCCccEEEEEEEEEeecCCCCCcEE----EEEEE--EEECCCCCcccccC-----CccHhhhhhccccHHH
Confidence 9999999999 444444443211111100011 01122 26999999877653 3344555555555554
No 3
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=9.6e-48 Score=353.13 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=172.6
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.++....
T Consensus 55 ~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Giipr~~~~LF~~i~~~~~ 131 (338)
T cd01370 55 KYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDS---DPGLMVLTMKDLFDKIEERKD 131 (338)
T ss_pred EEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCC---CCchHHHHHHHHHHhhhhccc
Confidence 499999999 9999999999999999999999999999999999999999999985 589999999999999998763
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
++.+.|.|||+||| ||+|+|||++..+.+.+++++.++++++|++++.|.+++|+.++|+ |.++|++++|.+|+.
T Consensus 132 --~~~~~v~vS~~EIy--ne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 207 (338)
T cd01370 132 --DKEFEVSLSYLEIY--NETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANAT 207 (338)
T ss_pred --CceEEEEEEEEEEE--CCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCc
Confidence 47999999999999 9999999999888899999999999999999999999999999999 999999999999999
Q ss_pred Cch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| |++..++.......+.... -|.|. -+||||||+..+.+ ..+.|+.|...||+||+
T Consensus 208 SSRSH~i~~i~i~~~~~~~~~~~~~~------~s~l~--~VDLAGsEr~~~~~-----~~g~~~~E~~~IN~SL~ 269 (338)
T cd01370 208 SSRSHAVLQITVRQKDRTASINQQVR------IGKLS--LIDLAGSERASATN-----NRGQRLKEGANINRSLL 269 (338)
T ss_pred cCcceEEEEEEEEEEecCCCCCCcEE------EEEEE--EEECCCCccccccC-----CCCccccccchhhHHHH
Confidence 999 4433333321111111111 11222 26999999876643 33455555555555553
No 4
>KOG0243|consensus
Probab=100.00 E-value=9.2e-49 Score=391.13 Aligned_cols=209 Identities=24% Similarity=0.332 Sum_probs=175.8
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-----CCCCCCchHHHHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-----SSATLGVIPSAISWLFRCI 74 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-----~~~~~GIipr~~~~LF~~i 74 (241)
+|+||.||+ .+.|++||+..|.|+|+.|+.|||||||||||||+||||||.|... .+..+|||||++.+||+.+
T Consensus 96 ~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~L 175 (1041)
T KOG0243|consen 96 TFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTL 175 (1041)
T ss_pred eeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHH
Confidence 599999999 9999999999999999999999999999999999999999999543 3568999999999999999
Q ss_pred HhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC---ceEEE-----ccCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852 75 SEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG---KFFRL-----CFLKRFHAEEDEEMPCPVPPPLHSNLL-TL 145 (241)
Q Consensus 75 ~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~---~~l~~-----~~~~g~~v~glt~v~V~s~~d~~~ll~-g~ 145 (241)
+... ..|+|+|||+|+| ||.++|||++.... ..++. +..+|++|.|+.++.|.++.|++++|+ |.
T Consensus 176 e~~~----~EYsvKVSfLELY--NEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs 249 (1041)
T KOG0243|consen 176 EAQG----AEYSVKVSFLELY--NEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGS 249 (1041)
T ss_pred HhcC----CeEEEEEEehhhh--hHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhh
Confidence 9874 5999999999999 99999999887653 23333 347899999999999999999999999 99
Q ss_pred cCCCccccCCCCCCch-hhhhceeeeCCCCCCc-ccccccccccccccccc---ccchhhhhhhhccccccccchhhHHH
Q psy9852 146 SRDSLISNKRNDNSSL-YSNSNERLHDPGGTGS-IKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQ 220 (241)
Q Consensus 146 ~~R~~~~T~~N~~SSr-f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (241)
.+|++++|.||++||| ++++.+-+|--..+.. -.- ++-|| |||||| +-.++||++|.|--|
T Consensus 250 ~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel---------vK~GKLNLVDLAGS-----ENI~RSGA~~~RArE 315 (1041)
T KOG0243|consen 250 KKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL---------VKIGKLNLVDLAGS-----ENISRSGARNGRARE 315 (1041)
T ss_pred hHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh---------Hhhcccceeecccc-----ccccccccccchhHH
Confidence 9999999999999999 6555555532221111 000 12233 599999 677888888888888
Q ss_pred HHHhhHHHH
Q psy9852 221 LKREKRALL 229 (241)
Q Consensus 221 ~~~~~~~~~ 229 (241)
++.||+|||
T Consensus 316 AG~INqSLL 324 (1041)
T KOG0243|consen 316 AGEINQSLL 324 (1041)
T ss_pred hhhhhHHHH
Confidence 888888887
No 5
>KOG0245|consensus
Probab=100.00 E-value=2.3e-48 Score=384.19 Aligned_cols=216 Identities=23% Similarity=0.315 Sum_probs=181.4
Q ss_pred CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852 1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72 (241)
Q Consensus 1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~ 72 (241)
.|+||++|| . |+|..||+++..|+++.+++|||+||||||||||||||||+|... +.++|||||.|++||.
T Consensus 48 ~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~-~~e~GIIPrlCEeLF~ 126 (1221)
T KOG0245|consen 48 KFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE-PDEPGIIPRLCEELFS 126 (1221)
T ss_pred ceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCC-CCCCCchhHHHHHHHH
Confidence 399999998 3 689999999999999999999999999999999999999999984 4589999999999999
Q ss_pred HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCC-CC-CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLS-TY-SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS 149 (241)
Q Consensus 73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~-~~-~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~ 149 (241)
++...+.. +..|.|.|||+||| ||+|+|||+ |. +.++.+|++|--|+||++|+...|.|+.|+..||. |++.|+
T Consensus 127 ri~~nq~~-~~sy~VevSymEIY--cErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRT 203 (1221)
T KOG0245|consen 127 RIADNQSQ-QMSYSVEVSYMEIY--CERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRT 203 (1221)
T ss_pred HHhhcccc-cceEEEEEeehhHH--HHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhh
Confidence 99998775 68999999999999 999999998 54 46679999999999999999999999999999999 999999
Q ss_pred ccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHH
Q psy9852 150 LISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQ 220 (241)
Q Consensus 150 ~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~ 220 (241)
+++|+||+.||| |+++.-+..++..+| ..+-+ =|-|.+ +|||||||+..+| .++--.+|.+|++
T Consensus 204 tAATnMNdtSSRSHaVFtIvftQk~~~~~~~-l~sek----~SKIsL--VDLAGSERasstGa~G~RLKEGa~INKSLtT 276 (1221)
T KOG0245|consen 204 TAATNMNDTSSRSHAVFTIVFTQKKHDQDTG-LDSEK----VSKISL--VDLAGSERASSTGANGDRLKEGANINKSLTT 276 (1221)
T ss_pred hhhhccccccccceeEEEEEEEeeeccccCC-Cccee----eeeeeE--EeccCcccccccCCCccchhcccccchHHHH
Confidence 999999999999 887776666666555 11111 123555 8999999987653 2233345555555
Q ss_pred HHHhhHH
Q psy9852 221 LKREKRA 227 (241)
Q Consensus 221 ~~~~~~~ 227 (241)
|++.-.+
T Consensus 277 LGkVISA 283 (1221)
T KOG0245|consen 277 LGKVISA 283 (1221)
T ss_pred HHHHHHH
Confidence 5554433
No 6
>KOG0242|consensus
Probab=100.00 E-value=1.4e-46 Score=370.43 Aligned_cols=190 Identities=24% Similarity=0.304 Sum_probs=169.6
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+..++|+|.++++|+|+||||||||||||||||.|... +|||||+++.+||+.|....
T Consensus 54 ~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~---~PGii~la~~dif~~I~~~~- 129 (675)
T KOG0242|consen 54 KYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSED---DPGIIPLAMKDIFEKIDKSG- 129 (675)
T ss_pred ceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCC---CCCeeehHHHHHHHHHHhcC-
Confidence 499999999 9999999999999999999999999999999999999999999997 48999999999999999876
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
...|.|.|||+||| ||.|+|||++..+.+.+++|+.+|++|+||++..|.|++++.+||. |.++|+++.|.+|..
T Consensus 130 --~r~f~v~vSYlEIY--NE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~ 205 (675)
T KOG0242|consen 130 --EREFSVRVSYLEIY--NERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQ 205 (675)
T ss_pred --CceeEEEEEEEEEe--ccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccc
Confidence 46999999999999 9999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND 207 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (241)
||| ++++...+..-+...+ + +... + +-+|||||||..+++
T Consensus 206 SSRSHaIl~i~i~s~~~~~~--~-~~s~----L--~lIDLAGSERas~T~ 246 (675)
T KOG0242|consen 206 SSRSHAILRITVESRGREAS--S-RVSK----L--NLIDLAGSERASRTG 246 (675)
T ss_pred cchhhheeeEEEEecccccc--c-hhhe----e--hhhhhhhhhhhhhhh
Confidence 999 7777666654433222 1 1111 1 347999999888763
No 7
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4e-46 Score=343.36 Aligned_cols=204 Identities=23% Similarity=0.306 Sum_probs=165.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|++. ++|||||++++||+.+..
T Consensus 56 ~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~---~~Gli~r~~~~lF~~~~~--- 129 (345)
T cd01368 56 KFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPG---DGGILPRSLDVIFNSIGG--- 129 (345)
T ss_pred EeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHHh---
Confidence 499999999 9999999999999999999999999999999999999999999985 689999999999999765
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCC------CceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccc
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSN------GKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLIS 152 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~------~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~ 152 (241)
+.|.|||+||| ||+|+|||++... .+.+++++.++++++|++++.|.+++|+.++|. |.++|++++
T Consensus 130 -----~~v~~S~~EIy--ne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~ 202 (345)
T cd01368 130 -----YSVFVSYVEIY--NNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAG 202 (345)
T ss_pred -----eeEEEEEEEEe--CCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceecc
Confidence 88999999999 9999999987653 578899999999999999999999999999999 999999999
Q ss_pred cCCCCCCch-hhhhceeeeC--CCCCCc-cccccccccccccccc---cccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852 153 NKRNDNSSL-YSNSNERLHD--PGGTGS-IKSFRNFGFGSGIQYC---KNDLETLEQYCKNDFNQSTWRNDRLEQLKREK 225 (241)
Q Consensus 153 T~~N~~SSr-f~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (241)
|.+|+.||| +.++...+.. ....|. ... ...+..+ -+||||||+..++ +..++|+.|...||
T Consensus 203 t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~------~~~~~~s~l~~VDLAGsEr~~~~-----~~~g~~~~E~~~IN 271 (345)
T cd01368 203 TKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD------KDQITVSQLSLVDLAGSERTSRT-----QNTGERLKEAGNIN 271 (345)
T ss_pred ccCcCCCCCceEEEEEEEEEeccCcccccccC------CCceEEEEEEEEecccccccccc-----cccchhhhhhhhhh
Confidence 999999999 4433333221 111111 000 0011122 2699999988875 22445555555555
Q ss_pred HHH
Q psy9852 226 RAL 228 (241)
Q Consensus 226 ~~~ 228 (241)
+||
T Consensus 272 ~SL 274 (345)
T cd01368 272 TSL 274 (345)
T ss_pred HHH
Confidence 555
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=376.47 Aligned_cols=216 Identities=24% Similarity=0.299 Sum_probs=177.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-------CCCCCCchHHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-------SSATLGVIPSAISWLFR 72 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-------~~~~~GIipr~~~~LF~ 72 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.. ...++|||||++++||.
T Consensus 133 tFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~ 212 (1320)
T PLN03188 133 TFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFA 212 (1320)
T ss_pred EEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHH
Confidence 599999999 9999999999999999999999999999999999999999999753 23578999999999999
Q ss_pred HHHhccc---CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852 73 CISEQKH---KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD 148 (241)
Q Consensus 73 ~i~~~~~---~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R 148 (241)
.+..... .....|.|+|||+||| ||+|+|||++....+.+++++.++++|+|++++.|.+++++.++|. |..+|
T Consensus 213 ~I~e~q~k~~d~~~~y~V~vSyLEIY--NEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR 290 (1320)
T PLN03188 213 RINEEQIKHADRQLKYQCRCSFLEIY--NEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNR 290 (1320)
T ss_pred HHHhhhhhccccccceEEEEEEEeee--cCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccc
Confidence 9875321 1246899999999999 9999999999888899999999999999999999999999999999 99999
Q ss_pred CccccCCCCCCch-hhhhceeeeC--CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852 149 SLISNKRNDNSSL-YSNSNERLHD--PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK 225 (241)
Q Consensus 149 ~~~~T~~N~~SSr-f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (241)
++++|.+|..||| ++++...+.. ........+++. |.|.. +|||||||+.++ +..+.|+.+.+.||
T Consensus 291 ~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~----SkLnL--VDLAGSER~kkT-----ga~G~RLkEA~~IN 359 (1320)
T PLN03188 291 RTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT----SRINL--VDLAGSERQKLT-----GAAGDRLKEAGNIN 359 (1320)
T ss_pred eeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE----EEEEE--EECCCchhcccc-----CcccHHHHHHHHHh
Confidence 9999999999999 4444333321 111111111111 12332 799999998765 35677788888888
Q ss_pred HHHH
Q psy9852 226 RALL 229 (241)
Q Consensus 226 ~~~~ 229 (241)
+||+
T Consensus 360 KSLs 363 (1320)
T PLN03188 360 RSLS 363 (1320)
T ss_pred HHHH
Confidence 8875
No 9
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-45 Score=336.85 Aligned_cols=203 Identities=22% Similarity=0.190 Sum_probs=168.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. ++|||||++++||+.++...
T Consensus 52 ~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Glipr~~~~lf~~~~~~~- 127 (322)
T cd01367 52 TFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDEN---QEGLYALAARDIFRLLAQPN- 127 (322)
T ss_pred eEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCC---cCccHHHHHHHHHHHHhccc-
Confidence 599999999 9999999999999999999999999999999999999999999985 58999999999999988764
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
..+.|.|||+||| ||+|+|||++ .+.+.+++++.++++++|+++++|.|++|+.++|+ |.++|++++|.+|+.
T Consensus 128 ---~~~~v~~S~~EIy--~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ 201 (322)
T cd01367 128 ---DDLGVTVSFFEIY--GGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQ 201 (322)
T ss_pred ---cccEEEEEEEeee--cCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCC
Confidence 4899999999999 9999999988 45688899999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHh
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKRE 224 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 224 (241)
||| +.++...+..... ...-|.|. -+||||+|+..+.+ ..++.++|.+|..|++.
T Consensus 202 SSRSH~i~~i~v~~~~~---------~~~~s~l~--~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~v 263 (322)
T cd01367 202 SSRSHAILQIILKNKKL---------NKLLGKLS--FIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKEC 263 (322)
T ss_pred cccceEEEEEEEEEecC---------CeeEEEEE--EeecCCccccccccccchhhHHhHhHHhHHHHHHHHH
Confidence 999 5544444432222 00111222 37999999876543 33444444444444443
No 10
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.3e-45 Score=334.77 Aligned_cols=215 Identities=21% Similarity=0.297 Sum_probs=174.5
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+++++|+|+||||||++||||||||+|+..+...+|||||++++||+.++....
T Consensus 49 ~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~ 128 (333)
T cd01371 49 VFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN 128 (333)
T ss_pred eeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC
Confidence 599999999 9999999999999999999999999999999999999999999987667899999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND 157 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~ 157 (241)
..+.|.|||+||| ||+|+|||++.. +.+.+++++.++++|+|++++.|.+++++..+|. |.++|++++|.+|+
T Consensus 129 ---~~~~v~~S~~Eiy--~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~ 203 (333)
T cd01371 129 ---VQFLVRVSYLEIY--NEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNE 203 (333)
T ss_pred ---ccEEEEEEEEEee--CCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccC
Confidence 5899999999999 999999998876 5678999999999999999999999999999999 99999999999999
Q ss_pred CCch-hhhhceeeeCCCC--CCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHH
Q psy9852 158 NSSL-YSNSNERLHDPGG--TGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRA 227 (241)
Q Consensus 158 ~SSr-f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 227 (241)
.||| +.++...+..... .+.. ....|.|.. +||||+|++.+++ +.++.++|..|..|++.=++
T Consensus 204 ~ssRSH~i~~i~v~~~~~~~~~~~-----~~~~s~L~~--VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~a 274 (333)
T cd01371 204 DSSRSHSIFTITIECSEKGEDGEN-----HIRVGKLNL--VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISA 274 (333)
T ss_pred CCCCCcEEEEEEEEEEeccCCCCC-----cEEEEEEEE--EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHH
Confidence 9999 4444333321111 0010 001112222 6999999987653 23444555555555544443
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8.4e-45 Score=335.56 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=171.4
Q ss_pred CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852 1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72 (241)
Q Consensus 1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~ 72 (241)
+|.||+||+ + ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.. ++|||||++++||+
T Consensus 49 ~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~ 125 (356)
T cd01365 49 SFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQ 125 (356)
T ss_pred EEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHH
Confidence 599999999 8 999999999999999999999999999999999999999999886 58999999999999
Q ss_pred HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD 148 (241)
Q Consensus 73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R 148 (241)
.++..... +..+.|.|||+||| ||+|+|||++.. ..+.+++++..+++++|++++.|.|++|+.++|. |.++|
T Consensus 126 ~~~~~~~~-~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R 202 (356)
T cd01365 126 RIESKKEQ-NLSYEVEVSYMEIY--NEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSR 202 (356)
T ss_pred HHhhcccc-CceEEEEEEEEEEE--CCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 99886543 56899999999999 999999998885 5678899999999999999999999999999999 99999
Q ss_pred CccccCCCCCCch-hhhhceeeeCCC--CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852 149 SLISNKRNDNSSL-YSNSNERLHDPG--GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK 225 (241)
Q Consensus 149 ~~~~T~~N~~SSr-f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (241)
++++|.+|..||| +.++...+.... ......... -|.| .-+||||+|+..+++ ..+.|+.|...||
T Consensus 203 ~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~----~s~l--~~VDLAGsEr~~~~~-----~~~~~~~E~~~IN 271 (356)
T cd01365 203 TTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK----VSKI--SLVDLAGSERASSTG-----AEGDRLKEGSNIN 271 (356)
T ss_pred cccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE----EEEE--Eeeeccccccccccc-----ccchhhHHHHHHh
Confidence 9999999999999 443333332111 100000000 0112 236999999887763 3345555555555
Q ss_pred HHH
Q psy9852 226 RAL 228 (241)
Q Consensus 226 ~~~ 228 (241)
+||
T Consensus 272 ~SL 274 (356)
T cd01365 272 KSL 274 (356)
T ss_pred HHH
Confidence 554
No 12
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.6e-45 Score=332.59 Aligned_cols=211 Identities=24% Similarity=0.332 Sum_probs=178.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+..+.|+|+.+++|+|+||||||++||||||||+|+..+...+|||||++++||+.+.....
T Consensus 44 ~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~ 123 (325)
T cd01369 44 TFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDE 123 (325)
T ss_pred EEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccC
Confidence 599999999 9999999999999999999999999999999999999999999998666899999999999999988643
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+..+.|.|||+||| ||+++|||++....+.+++++.++++++|++++.|.|++|+..+|. +.++|++++|.+|+.
T Consensus 124 --~~~~~v~~S~~EIy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ 199 (325)
T cd01369 124 --NLEFHVKVSYLEIY--MEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEE 199 (325)
T ss_pred --CceEEEEEEEEEEE--CCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCc
Confidence 46899999999999 9999999999888899999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| +.++...+.... ..+.. ..|.|. -+||||+|+..+ .+..+.++.+.+.||+||.
T Consensus 200 ssRSH~i~~i~v~~~~~~~~~~-------~~s~l~--~VDLAGsE~~~~-----~~~~~~~~~e~~~in~sl~ 258 (325)
T cd01369 200 SSRSHSIFLITLKQENVETGSK-------KRGKLF--LVDLAGSEKVSK-----TGAEGQTLEEAKKINKSLS 258 (325)
T ss_pred cccccEEEEEEEEEEecCCCCE-------EEEEEE--EEECCCCCcccc-----cCCcchhHHHHHHHhHHHH
Confidence 999 554444443211 11110 111222 279999998765 3456677777777777764
No 13
>KOG0240|consensus
Probab=100.00 E-value=9e-46 Score=349.70 Aligned_cols=211 Identities=22% Similarity=0.279 Sum_probs=181.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||. +++|++||+..++|+|+.|+.|||+||||||||||||||||.|...|+...|||||++++||..|.....
T Consensus 50 ~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~ 129 (607)
T KOG0240|consen 50 TYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEE 129 (607)
T ss_pred cceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcc
Confidence 599999999 9999999999999999999999999999999999999999999999877889999999999999998764
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+.+|.|.|||+||| +|+|+|||++.+.++.+++|...+++|+|+++..|.+++++.+.++ |..+|+++.|+||.+
T Consensus 130 --n~efhVkVsy~EIY--mEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~ 205 (607)
T KOG0240|consen 130 --NLEFHVKVSYFEIY--MEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEH 205 (607)
T ss_pred --cceEEEEEEeehhh--hhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhcccccc
Confidence 47999999999999 9999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
||| +.++..-+.-....--.+ + .|.+-. |||||||.+.|+ |+-+.-|++++.||+||
T Consensus 206 sSRSHsIF~i~VkQ~n~e~~~~--~----~gkLyL--VDLaGSEkvsKt-----ga~g~vleEaK~INkSL 263 (607)
T KOG0240|consen 206 SSRSHSIFLIHVKQENVEDKRK--L----SGKLYL--VDLAGSEKVSKT-----GAEGAVLEEAKNINKSL 263 (607)
T ss_pred ccccceEEEEEEEeccccchhh--c----cccEEE--EEcccccccCCC-----CccchhHHHHhhhhhhH
Confidence 999 555444443332211110 0 001111 699999666654 67788888888888887
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.2e-44 Score=331.93 Aligned_cols=210 Identities=21% Similarity=0.313 Sum_probs=171.0
Q ss_pred CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccC
Q psy9852 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK 80 (241)
Q Consensus 1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~ 80 (241)
+|.||+||+.++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..+..++|||||++++||+.++...
T Consensus 49 ~f~FD~vf~~~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-- 126 (334)
T cd01375 49 SFKFDGVFHNASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-- 126 (334)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc--
Confidence 499999999899999999999999999999999999999999999999999998755679999999999999998764
Q ss_pred CCcEEEEEEEEEEEeCCCCeEEEcCCCCC------CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852 81 TGARFSVRASAIEISSSSQHVKDLLSTYS------NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN 153 (241)
Q Consensus 81 ~~~~~~V~vS~lEIY~~nE~v~DLL~~~~------~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T 153 (241)
+..+.|.+||+||| ||+|+|||++.. +.+.+++++.++++|+|++++.|.+++|+..+|. |..+|++++|
T Consensus 127 -~~~~~v~~S~~Eiy--~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t 203 (334)
T cd01375 127 -TKTYTVHVSYLEIY--NEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAET 203 (334)
T ss_pred -CcceEEEEEEEEEE--CCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccC
Confidence 35899999999999 999999998884 5578899999999999999999999999999999 9999999999
Q ss_pred CCCCCCch-hhhhceeeeCC--CCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHH
Q psy9852 154 KRNDNSSL-YSNSNERLHDP--GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKR 223 (241)
Q Consensus 154 ~~N~~SSr-f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (241)
.+|+.||| ++++...+... ...+... .-|.|. -+||||+|+..+++ +.++.++|.+|..|++
T Consensus 204 ~~n~~sSRSH~i~~l~v~~~~~~~~~~~~------~~s~l~--~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~ 273 (334)
T cd01375 204 SMNQASSRSHCIFTIHLESRSREAGSEVV------RLSKLN--LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQ 273 (334)
T ss_pred cCcCCcCcCeEEEEEEEEEEecCCCCCce------EEEEEE--EEECCCCCccccccCchhhhhhhhhhhhhHHHHHH
Confidence 99999999 44444433311 1100000 001122 26999999887753 3444444444444443
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2e-44 Score=328.57 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=172.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.. ++|||||++++||+.++...
T Consensus 48 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~Glipr~~~~Lf~~~~~~~- 123 (319)
T cd01376 48 KYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPN---EPGLIPRTLSDLLRMGRKQA- 123 (319)
T ss_pred EEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcC---ccchHHHHHHHHHHHHhhcc-
Confidence 599999999 9999999999999999999999999999999999999999999986 58999999999999887653
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+.+.|.+||+||| ||+|+|||++....+.+++++.++++++|+++++|.+++|+.+++. |.++|++++|.+|+.
T Consensus 124 ---~~~~v~~S~~EIy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 198 (319)
T cd01376 124 ---WTGAFSMSYYEIY--NEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDN 198 (319)
T ss_pred ---ccceEEEEEEEEE--CCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCc
Confidence 5899999999999 9999999999888899999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| +.++...+....... ..-|.|.. +||||+|+..++ +..+.|+.+.+.||+||+
T Consensus 199 SSRSH~i~~i~v~~~~~~~--------~~~s~l~~--VDLAGsE~~~~~-----~~~g~~~~e~~~iN~Sl~ 255 (319)
T cd01376 199 SSRSHAVLRIKVTQPASNI--------QLEGKLNL--IDLAGSEDNRRT-----GNEGIRLKESAAINSSLF 255 (319)
T ss_pred cCCCeEEEEEEEEEECCCc--------eEEEEEEE--EECCCCCccccc-----CCccchhhhhhhhhhhHH
Confidence 999 444433332221111 11122333 799999875543 345666666666666653
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.1e-44 Score=328.48 Aligned_cols=212 Identities=23% Similarity=0.273 Sum_probs=174.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+..+.|+|+.+++|+|+||||||++||||||||+|+.. ++|||||++++||+.+....
T Consensus 41 ~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~---~~Gli~r~~~~lf~~~~~~~- 116 (321)
T cd01374 41 SFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQ---EPGIIPLAVRDIFQRIQDTP- 116 (321)
T ss_pred EEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCC---CCchHHHHHHHHHHHHhccc-
Confidence 499999999 9999999999999999999999999999999999999999999985 58999999999999998765
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+..|.|.|||+||| ||+|+|||++....+.+++++.++++++|++++.|.|++++.++|+ |.++|++++|.+|++
T Consensus 117 --~~~~~v~~S~~Eiy--~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 192 (321)
T cd01374 117 --DREFLLRVSYLEIY--NEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNER 192 (321)
T ss_pred --CceEEEEEEEEEEE--cCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCc
Confidence 35899999999999 9999999999988899999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCc--cccccccccccccccccccchhhhhhhhcc----ccccccchhhHHHHHHhhHH
Q psy9852 159 SSL-YSNSNERLHDPGGTGS--IKSFRNFGFGSGIQYCKNDLETLEQYCKND----FNQSTWRNDRLEQLKREKRA 227 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 227 (241)
||| +.++...+........ ..... |.| .-+||||+|+..+.+ ..|+.++|..|..|++.=++
T Consensus 193 ssRSH~i~~i~v~~~~~~~~~~~~~~~-----s~l--~~vDLAGsE~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~a 261 (321)
T cd01374 193 SSRSHTIFQLTIESRERGDSESGTVRV-----STL--NLIDLAGSERASQTGAGERRKEGSFINKSLLTLGTVISK 261 (321)
T ss_pred cccccEEEEEEEEEEecCCCCCCcEEE-----EEE--EEEECCCCCccccCCCCccccccchhhhHHHHHHHHHHH
Confidence 999 4444444332221110 00000 111 236999999876663 44555666666666655444
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.3e-43 Score=325.45 Aligned_cols=218 Identities=23% Similarity=0.296 Sum_probs=174.0
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC---CCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS---SATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~---~~~~GIipr~~~~LF~~i~~ 76 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+... ..++|||||++++||+.++.
T Consensus 41 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~ 120 (341)
T cd01372 41 SFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDE 120 (341)
T ss_pred EEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHh
Confidence 599999999 99999999999999999999999999999999999999999998642 45799999999999999998
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccc
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLIS 152 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~ 152 (241)
... +.++.|.|||+||| ||+|+|||++. ...+.+++++.++++++|++++.|.+++|+.++|. +.++|+..+
T Consensus 121 ~~~--~~~~~v~vS~~EIy--~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~ 196 (341)
T cd01372 121 KKD--EPDFQLKVSFLELY--NEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTAS 196 (341)
T ss_pred ccc--cceEEEEEEEEEeE--CCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhccccc
Confidence 754 36899999999999 99999999887 46789999999999999999999999999999999 999999999
Q ss_pred cCCCCCCch-hh---hhceeeeCCCCCCc-cccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHH
Q psy9852 153 NKRNDNSSL-YS---NSNERLHDPGGTGS-IKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRA 227 (241)
Q Consensus 153 T~~N~~SSr-f~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (241)
|.+|+.||| +. +...+........+ ...-..-...|.|. -+||||+|+..+++ ..++|+.|...||++
T Consensus 197 t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~--~VDLAGsE~~~~~~-----~~~~~~~e~~~in~s 269 (341)
T cd01372 197 TAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFH--FVDLAGSERLKKTG-----ATGDRLKEGISINSG 269 (341)
T ss_pred ccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEE--EEECCCCccccccc-----CchhHhHHHHHHhHH
Confidence 999999999 33 33333322110000 00000001111222 26999999876543 345666666666666
Q ss_pred HH
Q psy9852 228 LL 229 (241)
Q Consensus 228 ~~ 229 (241)
|+
T Consensus 270 l~ 271 (341)
T cd01372 270 LL 271 (341)
T ss_pred HH
Confidence 54
No 18
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.2e-43 Score=325.45 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=171.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC--------CCCCCchHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--------SATLGVIPSAISWLF 71 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~--------~~~~GIipr~~~~LF 71 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+... ...+|||||++++||
T Consensus 49 ~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf 128 (352)
T cd01364 49 TYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLF 128 (352)
T ss_pred eEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHH
Confidence 599999999 99999999999999999999999999999999999999999998654 356899999999999
Q ss_pred HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEc--cCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852 72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLC--FLKRFHAEEDEEMPCPVPPPLHSNLL-TL 145 (241)
Q Consensus 72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~--~~~g~~v~glt~v~V~s~~d~~~ll~-g~ 145 (241)
+.++.. +..+.|.|||+||| ||+|+|||++. .+.+.++++ ..++++|+|++++.|.+++|+.++|+ |.
T Consensus 129 ~~~~~~----~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~ 202 (352)
T cd01364 129 EKLESQ----NTEYSVKVSYLELY--NEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGS 202 (352)
T ss_pred HHHHhc----cceeEEEEEEEEee--CCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHh
Confidence 999876 35899999999999 99999999887 466788998 58999999999999999999999999 99
Q ss_pred cCCCccccCCCCCCch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHH
Q psy9852 146 SRDSLISNKRNDNSSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLK 222 (241)
Q Consensus 146 ~~R~~~~T~~N~~SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (241)
++|++++|.+|+.||| ++++...+. +....+. ... ..|.|.. +||||+|+..+.+ ..+.|+.+..
T Consensus 203 ~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~-~~~----~~s~l~~--VDLAGsE~~~~~~-----~~~~~~~e~~ 270 (352)
T cd01364 203 AKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE-ELV----KIGKLNL--VDLAGSENIGRSG-----AENKRAREAG 270 (352)
T ss_pred hhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC-ccE----EEEEEEE--EECCCcccccccc-----CcchhhHHHh
Confidence 9999999999999999 433333222 1111111 000 1122332 6999999876553 3445666666
Q ss_pred HhhHHHH
Q psy9852 223 REKRALL 229 (241)
Q Consensus 223 ~~~~~~~ 229 (241)
.||+||+
T Consensus 271 ~iN~SL~ 277 (352)
T cd01364 271 NINQSLL 277 (352)
T ss_pred hhhHHHH
Confidence 6666654
No 19
>KOG0239|consensus
Probab=100.00 E-value=2.6e-44 Score=353.61 Aligned_cols=218 Identities=26% Similarity=0.351 Sum_probs=184.1
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ .++|++||. -+.|+|.++++|||+||||||||||||||||.|+ .+.++|||||++++||+.+.....
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFE-EVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKS 437 (670)
T ss_pred cceeeeecCCcccHHHHHH-HHHHHHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhcc
Confidence 499999999 999999998 5899999999999999999999999999999996 234699999999999999998765
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN 156 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N 156 (241)
+|.|.+.+||+||| ||.|+|||++.. ....|++++++..+|++++.++|.+.+++..+|+ |.++|++++|.+|
T Consensus 438 --g~~y~~~~s~~EIY--Ne~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~N 513 (670)
T KOG0239|consen 438 --GWKYDKTVSMLEIY--NEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASN 513 (670)
T ss_pred --CceEEeeeehhHHH--HHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccc
Confidence 79999999999999 999999998874 5678899999999999999999999999999999 9999999999999
Q ss_pred CCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHHH----
Q psy9852 157 DNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLI---- 230 (241)
Q Consensus 157 ~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 230 (241)
.+||| +.++..++.-- ..+|.... + -+.. +|||||||+ ..++.++.||-++..|||||-.
T Consensus 514 e~SSRSH~v~~v~v~g~~~~t~~~~~-g------~l~L--VDLAGSER~-----~~s~~tG~RlkE~Q~INkSLS~LgdV 579 (670)
T KOG0239|consen 514 ERSSRSHLVFRVRIRGINELTGIRVT-G------VLNL--VDLAGSERV-----SKSGVTGERLKEAQNINKSLSALGDV 579 (670)
T ss_pred hhhhccceEEEEEEeccccCcccccc-c------ceeE--eecccCccc-----CcCCCchhhhHHHHHhchhhhhhHHH
Confidence 99999 66555555322 11111100 0 0122 699999994 4488999999999999999843
Q ss_pred --Hhhhccccc
Q psy9852 231 --ELAATKTHL 239 (241)
Q Consensus 231 --~~~~~~~~~ 239 (241)
-||....|.
T Consensus 580 i~AL~~k~~Hi 590 (670)
T KOG0239|consen 580 ISALASKRSHI 590 (670)
T ss_pred HHHHhhcCCCC
Confidence 455555554
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-42 Score=317.80 Aligned_cols=209 Identities=26% Similarity=0.395 Sum_probs=172.8
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+. +.|+|+++++|+|+||||||++||||||||+|+.. ++||+||++++||+.++...+
T Consensus 46 ~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~---~~Gli~r~~~~lf~~~~~~~~ 121 (329)
T cd01366 46 SFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPE---NPGIIPRALEQLFNTAEELKE 121 (329)
T ss_pred EEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCC---CCCcHHHHHHHHHHHHHhhhc
Confidence 499999999 9999999996 69999999999999999999999999999999985 589999999999999988765
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCC---CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTY---SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~---~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
. +..+.|.+||+||| ||+++|||++. .+.+.+++++.++++++|++++.|.|++|+.+++. +.++|.++.|.+
T Consensus 122 ~-~~~~~v~~S~~EIy--~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~ 198 (329)
T cd01366 122 K-GWSYTITASMLEIY--NETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNM 198 (329)
T ss_pred c-CceEEEEEEEEEEE--CCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccc
Confidence 2 57999999999999 99999999987 57789999999999999999999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
|+.||| +.++...+......+... ..|.|.. +||||+|+..+. +..+.|+.|.+.||+||+
T Consensus 199 n~~sSRsH~i~~i~v~~~~~~~~~~------~~s~l~~--VDLaGsE~~~~~-----~~~~~~~~e~~~in~Sl~ 260 (329)
T cd01366 199 NEHSSRSHAVFQLKIRGTNLQTGEQ------TRGKLNL--VDLAGSERLKKS-----GATGDRLKEAQAINKSLS 260 (329)
T ss_pred cCCCCCccEEEEEEEEEEcCCCCcE------EEEEEEE--EECCCCcccccc-----cccchhhHhHhhhhhHHH
Confidence 999999 554444443111111100 1112222 699999988765 344556666666666654
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=8.6e-43 Score=318.42 Aligned_cols=214 Identities=28% Similarity=0.347 Sum_probs=170.2
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||++||||||||+|+. +..++|||||++++||+.++....
T Consensus 42 ~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~-~~~~~Gli~~~~~~lf~~~~~~~~ 120 (335)
T PF00225_consen 42 SFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSN-DPSEPGLIPRALRDLFSQIEERKE 120 (335)
T ss_dssp EEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBST-STTTBSHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccc-cccccchhhhHHHHHhhhhccccc
Confidence 499999999 999999999999999999999999999999999999999999992 124799999999999999998765
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC----CCceEEEccCCc-EEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS----NGKFFRLCFLKR-FHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN 153 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~----~~~~l~~~~~~g-~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T 153 (241)
..+..+.|.|||+||| ||+|+|||++.. +.+.+++++..| ++++|+++++|.+++++..+|. |.++|++..|
T Consensus 121 ~~~~~~~v~vS~~EIy--~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t 198 (335)
T PF00225_consen 121 KSGYEFSVSVSYLEIY--NEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTAST 198 (335)
T ss_dssp TSTEEEEEEEEEEEEE--TTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSS
T ss_pred cccccccccccchhhh--hhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccccc
Confidence 3346899999999999 999999999883 457889999977 9999999999999999999999 9999999999
Q ss_pred CCCCCCch-hhhhc---eeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852 154 KRNDNSSL-YSNSN---ERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 154 ~~N~~SSr-f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
.+|..||| +.++. ++.......... ... -|.|.. +||||+|+..+.+. ..++++.+...||+||
T Consensus 199 ~~n~~sSRSH~i~~i~v~~~~~~~~~~~~-~~~----~s~l~~--vDLaGsE~~~~~~~----~~~~~~~e~~~in~Sl 266 (335)
T PF00225_consen 199 KMNARSSRSHAIFTIHVEQKDRDPSDDEE-SVK----HSRLTF--VDLAGSERLKKSGA----SDGQRLKESSNINKSL 266 (335)
T ss_dssp SCTHHGGGSEEEEEEEEEEEETTTTTEEE-EEE----EEEEEE--EEEEESTGGCGCSS----SSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc-cee----ecceee--eecccccccccccc----cccccccccceecchh
Confidence 99999999 33333 333222222111 111 112233 79999998877753 1234444444444444
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4e-41 Score=307.82 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=178.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+|||+||++||||||||+|+.. ++||+|+++++||+.+.....
T Consensus 47 ~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~ 123 (335)
T smart00129 47 KFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPD---SPGIIPRALKDLFEKIDKLEE 123 (335)
T ss_pred EEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCC---CCCHHHHHHHHHHHHhhhccc
Confidence 499999999 9999999999999999999999999999999999999999999875 589999999999999977653
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+..+.|.|||+||| +|+|+|||++.++.+.+++++.++++++|++++.|.|++++.++|. +.++|.+++|.+|+.
T Consensus 124 --~~~~~v~~S~~ei~--~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 199 (335)
T smart00129 124 --GWQFQVKVSYLEIY--NEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEE 199 (335)
T ss_pred --CceEEEEEEEEEEE--CCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCC
Confidence 46899999999999 9999999999988899999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852 159 SSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 159 SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 228 (241)
||| +.++...+. ........ ...|.|. -+||||+|+..+.+ .+|..++|..|..|++.=++|
T Consensus 200 ssRsH~i~~l~v~~~~~~~~~~~------~~~s~l~--~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l 269 (335)
T smart00129 200 SSRSHAVFTITVESKIKNSSSGS------GKASKLN--LVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINAL 269 (335)
T ss_pred CCcceEEEEEEEEEEecCCCCCC------EEEEEEE--EEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHH
Confidence 999 444443333 11110000 0111122 36999999887654 566777788888877766665
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.4e-41 Score=306.36 Aligned_cols=211 Identities=28% Similarity=0.351 Sum_probs=170.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||++||||||||+|+.. ++||||+++++||+.+.....
T Consensus 46 ~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~ 122 (328)
T cd00106 46 SFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPK---DPGIIPRALEDLFNLIDERKE 122 (328)
T ss_pred EEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccc
Confidence 499999999 9999999999999999999999999999999999999999999986 589999999999999988753
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCC--CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTY--SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN 156 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~--~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N 156 (241)
.+..+.|.+||+||| +|+|+|||++. ...+.+++++.++++++|++++.|.|++|+.++|. +.++|.+.+|.+|
T Consensus 123 -~~~~~~v~~S~~Ei~--~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n 199 (328)
T cd00106 123 -KNKSFSVSVSYLEIY--NEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMN 199 (328)
T ss_pred -cCceEEEEEEEEEEE--CCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCC
Confidence 145899999999999 99999999998 88889999999999999999999999999999999 9999999999999
Q ss_pred CCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852 157 DNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 157 ~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
+.||| +.++...+.......... ....|.|. -+||||+|+..+.+ ..+.++.+...||+||
T Consensus 200 ~~ssRSH~i~~i~v~~~~~~~~~~----~~~~s~l~--~VDLaGse~~~~~~-----~~~~~~~e~~~in~sl 261 (328)
T cd00106 200 ERSSRSHAIFTIHVEQRNTTNDGR----SIKSSKLN--LVDLAGSERAKKTG-----AEGDRLKEAKNINKSL 261 (328)
T ss_pred CCcCcCcEEEEEEEEEEecCCCCc----cEEEEEEE--EEECCCCCcccccC-----CchhhhHhHHhhhhhH
Confidence 99999 443333332221111100 01111222 26999999876642 3344444444455444
No 24
>KOG0241|consensus
Probab=100.00 E-value=6.4e-42 Score=335.22 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=176.9
Q ss_pred CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852 1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72 (241)
Q Consensus 1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~ 72 (241)
+|.||++|+ . +.|+.||+.....+|+.+|+|||+||||||||||||||||+|... ++|||||.++.||+
T Consensus 54 tFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~---QpGiIPrlc~~lFe 130 (1714)
T KOG0241|consen 54 TFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAE---QPGIIPRLCESLFE 130 (1714)
T ss_pred eeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCC---CCCchhHHHHHHHH
Confidence 699999998 3 689999999999999999999999999999999999999999987 69999999999999
Q ss_pred HHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852 73 CISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS 149 (241)
Q Consensus 73 ~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~ 149 (241)
+|+.... ++..|+|.|||+||| ||++||||.|.. +.++++++.-.|.||.||++..|.|++|+..+|. |++.|+
T Consensus 131 ~I~k~~n-~~~tfkVeVSymEIy--nEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrt 207 (1714)
T KOG0241|consen 131 RIDKESN-PSQTFKVEVSYMEIY--NEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRT 207 (1714)
T ss_pred HHHhccC-CCceEEEEEEHHHHh--hcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccce
Confidence 9998764 578999999999999 999999998875 4468899999999999999999999999999999 999999
Q ss_pred ccccCCCCCCch----hhhhc-eeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHH
Q psy9852 150 LISNKRNDNSSL----YSNSN-ERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLE 219 (241)
Q Consensus 150 ~~~T~~N~~SSr----f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~ 219 (241)
+++|+||..||| |+++. .++.|+.+-.|.+.-. .|.. +||||+||..|++ |.+..-+|-+|+
T Consensus 208 vaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvs------klsl--VDLAgserasktga~g~rlkegsNinkSLt 279 (1714)
T KOG0241|consen 208 VAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVS------KLSL--VDLAGSERASKTGAAGSRLKEGSNINKSLT 279 (1714)
T ss_pred eeeecccccccccceeEEEEEeeEEeccccCcchhhee------eeeE--EEeccccccccccchhhhhhhcCCcchhhH
Confidence 999999999998 76554 4466666533332211 2333 7999999999884 334444444455
Q ss_pred HHHHh
Q psy9852 220 QLKRE 224 (241)
Q Consensus 220 ~~~~~ 224 (241)
+|++.
T Consensus 280 tLglV 284 (1714)
T KOG0241|consen 280 TLGLV 284 (1714)
T ss_pred HHHHH
Confidence 54443
No 25
>KOG0247|consensus
Probab=100.00 E-value=3.9e-40 Score=318.30 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=177.8
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc-
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH- 79 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~- 79 (241)
|.|-+||+ +++|.+||+.++.|+|..++.|.|..+|+||.|||||||||.|++. .+||+||+++-||..|+....
T Consensus 83 fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~---~~GIlPR~Ld~iF~siq~~~~~ 159 (809)
T KOG0247|consen 83 FSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPD---RPGILPRALDVIFNSIQGRQAK 159 (809)
T ss_pred eeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCC---CCCchHHHHHHHHHHhhceecc
Confidence 89999999 9999999999999999999999999999999999999999999997 589999999999999976210
Q ss_pred -------------------------------------------------------------CCCcEEEEEEEEEEEeCCC
Q psy9852 80 -------------------------------------------------------------KTGARFSVRASAIEISSSS 98 (241)
Q Consensus 80 -------------------------------------------------------------~~~~~~~V~vS~lEIY~~n 98 (241)
..+..|+|+|||+||| |
T Consensus 160 k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIY--N 237 (809)
T KOG0247|consen 160 KPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIY--N 237 (809)
T ss_pred CceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHH--H
Confidence 0234789999999999 9
Q ss_pred CeEEEcCCCCCCC------ceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCCCch-hhhhceeee
Q psy9852 99 QHVKDLLSTYSNG------KFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDNSSL-YSNSNERLH 170 (241)
Q Consensus 99 E~v~DLL~~~~~~------~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~SSr-f~~~~~~~~ 170 (241)
|-|||||.+.... ..+++|.++..||+|+++|.|.+.+|+++||. |.++|++++|.+|+.||| ++++.+++.
T Consensus 238 ~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~ 317 (809)
T KOG0247|consen 238 NYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLV 317 (809)
T ss_pred HHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEee
Confidence 9999999776322 35688999999999999999999999999999 999999999999999999 777777765
Q ss_pred CCCCC---CccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 171 DPGGT---GSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 171 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
...+. +-+..- +++=+|||||||.++++ -.|.||-|.+.||+||+
T Consensus 318 q~~~~~~s~~i~vS---------qlsLvDLAGSERt~rtq-----~sG~RLrEagNINtSLm 365 (809)
T KOG0247|consen 318 QAPRSQDSNQITVS---------QLSLVDLAGSERTNRTQ-----NSGERLREAGNINTSLM 365 (809)
T ss_pred ecccccccCceeEE---------eeeeeecccchhccccc-----chhHHHHhhccccHHHH
Confidence 55443 111111 22336999999998874 46778888888888876
No 26
>KOG0246|consensus
Probab=100.00 E-value=1.8e-37 Score=293.25 Aligned_cols=218 Identities=21% Similarity=0.226 Sum_probs=179.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~ 76 (241)
.|.||++|| .+++++||+-++.|+|+.+|+|--+|+||||||||||||||.|.-. .....||+-++.+++|..+..
T Consensus 259 ~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~ 338 (676)
T KOG0246|consen 259 KFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQ 338 (676)
T ss_pred eEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcc
Confidence 499999999 9999999999999999999999999999999999999999987753 134689999999999999887
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
..-. ...+.|.+|||||| ..++||||++ ++.+.+.+|.+..++|-||++..|.+.++++++|+ |+..|+++.|..
T Consensus 339 p~Y~-~~~l~v~~tFFEIY--gGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsA 414 (676)
T KOG0246|consen 339 PTYR-KLDLKVYVTFFEIY--GGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSA 414 (676)
T ss_pred cchh-hcceEEEEEEEEEe--Ccchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccC
Confidence 5432 46789999999999 8999999977 55578899999999999999999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHH--HHhhHHHHH--
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQL--KREKRALLI-- 230 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-- 230 (241)
|+.||| +.++++.+..-+. .+-++-|.+ +||||+||-.-+. .++|.+.+ -.||||||.
T Consensus 415 Ns~SSRSHAvfQIilr~~~~---~k~hGKfSl--------IDLAGnERGaDts------~adRqtRlEGAEINKSLLALK 477 (676)
T KOG0246|consen 415 NSNSSRSHAVFQIILRKHGE---FKLHGKFSL--------IDLAGNERGADTS------SADRQTRLEGAEINKSLLALK 477 (676)
T ss_pred cccccccceeEeeeeecCCc---ceeEeEEEE--------EEccCCccCCccc------ccchhhhhhhhhhhHHHHHHH
Confidence 999999 7766666643222 344444444 6999999865443 34455444 368999974
Q ss_pred ----Hhhhccccc
Q psy9852 231 ----ELAATKTHL 239 (241)
Q Consensus 231 ----~~~~~~~~~ 239 (241)
-|...|.|+
T Consensus 478 ECIRaLg~nk~H~ 490 (676)
T KOG0246|consen 478 ECIRALGRNKSHL 490 (676)
T ss_pred HHHHHhcCCCCCC
Confidence 244455554
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-37 Score=297.93 Aligned_cols=209 Identities=23% Similarity=0.308 Sum_probs=174.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ .++|++||+..+.|++++++.||||||||||||||||||||.|... ++||||+++.+||+.++....
T Consensus 57 ~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~---~~Gii~~~l~~lf~~l~~~~~ 133 (568)
T COG5059 57 TYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE---EPGIIPLSLKELFSKLEDLSM 133 (568)
T ss_pred EEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcc---ccchHHHHHHHHHHHHHhccc
Confidence 499999999 9999999999999999999999999999999999999999999995 689999999999999998865
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
+..+.|.+||+||| ||+++|||.+....+.++++...++++.+++++.+.+.+++..+|+ +..+|++++|.+|+.
T Consensus 134 --~~~~~v~is~lEiY--nEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ 209 (568)
T COG5059 134 --TKDFAVSISYLEIY--NEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDE 209 (568)
T ss_pred --CcceeeEeehhHHH--hhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccc
Confidence 46899999999999 9999999999988788899999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| ++++...+..-...... .++ +-+ .-+||||+|+... .++++.|+.+..-|||+|+
T Consensus 210 ssRshsi~~i~~~~~~~~~~~--~~~----~~l--~lvDLagSE~~~~-----~~~~~~r~~E~~~iN~sLl 268 (568)
T COG5059 210 SSRSHSIFQIELASKNKVSGT--SET----SKL--SLVDLAGSERAAR-----TGNRGTRLKEGASINKSLL 268 (568)
T ss_pred cccceEEEEEEEEEeccCccc--eec----ceE--EEEeeccccccch-----hhcccchhhhhhhhHhhHH
Confidence 999 55554444322111111 010 112 2369999975544 3556666666666666664
No 28
>KOG0244|consensus
Probab=99.98 E-value=1.4e-33 Score=278.97 Aligned_cols=209 Identities=24% Similarity=0.288 Sum_probs=175.1
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCC-CCchHHHHHHHHHHHHhcc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT-LGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~-~GIipr~~~~LF~~i~~~~ 78 (241)
+|+||+||+ ...|.++|+..|.|+++.+++|||+|++|||||||||||||.+....... .|+|||+++++|..+....
T Consensus 33 s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~ 112 (913)
T KOG0244|consen 33 SFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTE 112 (913)
T ss_pred ceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhh
Confidence 599999999 99999999999999999999999999999999999999999877443233 5999999999999999876
Q ss_pred cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCC--ceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 79 HKTGARFSVRASAIEISSSSQHVKDLLSTYSNG--KFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~--~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
. ..|.|.|||+||| +|.|+|||.|...- ..+++ +.+++.+.+++++.|.+..+..+.|. |...|++++|+|
T Consensus 113 ~---~~f~i~vs~vely--~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnM 186 (913)
T KOG0244|consen 113 S---FVFRITVSFVELY--NEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNM 186 (913)
T ss_pred c---cceeeeeeeeecc--chhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 5 4899999999999 99999999865433 45555 67789999999999999999999999 999999999999
Q ss_pred CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHHH
Q psy9852 156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALLI 230 (241)
Q Consensus 156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (241)
|++||| |++..++..-.....+ |. |-+ -.+|||||||+-+++ ..+.|+.+==.||+.||.
T Consensus 187 N~qssRshAifti~lkq~kk~~~~s~---~~-----sKl--hlVDLAGSER~kkT~-----a~gdrlKEgInIN~gLL~ 250 (913)
T KOG0244|consen 187 NAQSSRSHAIFTITLKQRKKLSKRSS---FC-----SKL--HLVDLAGSERVKKTK-----AEGDRLKEGININGGLLA 250 (913)
T ss_pred chhhhhhhHHHHHHHHHHHHhhccch---hh-----hhh--heeeccccccccccc-----cchhhhhhccCcchHHHH
Confidence 999999 8888888543322111 11 112 237999999888774 567788777778887764
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.89 E-value=4.3e-23 Score=174.72 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccCCCcEEEEEEEEEEEe
Q psy9852 16 ICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEIS 95 (241)
Q Consensus 16 Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~~~~~~~V~vS~lEIY 95 (241)
||+.+. |+|+.+++|+|+|||||||+||||||||+|++. ++||+|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~---~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE---GAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCC---CCCcchHHHHH--------------------------
Confidence 899888 999999999999999999999999999999985 58999999887
Q ss_pred CCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCCCch-hhhhceeee--C
Q psy9852 96 SSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDNSSL-YSNSNERLH--D 171 (241)
Q Consensus 96 ~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~SSr-f~~~~~~~~--~ 171 (241)
+.++++ +..+|++++|.+|+.||| +..+...+. +
T Consensus 58 ------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~ 95 (186)
T cd01363 58 ------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKN 95 (186)
T ss_pred ------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEee
Confidence 788999 999999999999999999 333333322 1
Q ss_pred CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 172 PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
....+... . .-|.|. -+||||+|+..+++ ..+.|+.|.+.||+||.
T Consensus 96 ~~~~~~~~-~----~~s~l~--lVDLAGsE~~~~~~-----~~~~~~~e~~~in~sl~ 141 (186)
T cd01363 96 ALASATEQ-P----KVGKIN--LVDLAGSERIDFSG-----AEGSRLTETANINKSLS 141 (186)
T ss_pred cCCCCccc-e----eeeeEE--EEEccccccccccC-----CchhhHHHHHHHhhHHH
Confidence 11101000 0 011122 26999998776654 33456666666666663
No 30
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.90 E-value=0.021 Score=49.52 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=31.5
Q ss_pred CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.|+||.......++..|. .+..+.+.--..+|. ++-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g~~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--TTTTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCcCCcHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 378888776555667775 455555542223454 7889999999999773
No 31
>PRK06620 hypothetical protein; Validated
Probab=92.99 E-value=0.066 Score=46.38 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCC---EEEEcccccCCCcceeecc
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSD---GCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n---~ti~aYGqtgSGKTyTm~G 52 (241)
|+||.......++..|.. +..+.+. . |+| -.++-||++||||||-+..
T Consensus 13 ~tfd~Fvvg~~N~~a~~~-~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 13 YHPDEFIVSSSNDQAYNI-IKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCchhhEecccHHHHHHH-HHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 667776664445667764 4444331 1 343 3589999999999999964
No 32
>PRK06893 DNA replication initiation factor; Validated
Probab=92.98 E-value=0.086 Score=45.85 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=28.6
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
++||..+. . +..-+ ..+....-..++..++-||++|+||||-+.
T Consensus 13 ~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 13 ETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred ccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 46777776 4 22222 222233334677788999999999999984
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.94 E-value=0.068 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.|++..+++--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 568888899999999999999999999999
No 34
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.19 E-value=0.57 Score=46.22 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCch----HHHHHHHHHHHHh
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI----PSAISWLFRCISE 76 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIi----pr~~~~LF~~i~~ 76 (241)
|....-|. .-+| -..+..||+.+-.|...-+ ..|.|||||||||.--=.....|-+| --.+.+||...+.
T Consensus 5 F~l~s~f~PaGDQ----P~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~ 79 (663)
T COG0556 5 FKLHSPFKPAGDQ----PEAIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKE 79 (663)
T ss_pred eEeccCCCCCCCc----HHHHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHH
Confidence 33444455 4555 3467888888877776544 45999999999995211000111221 1134577877776
Q ss_pred cccCCCcEEEEEEEEEEEeC
Q psy9852 77 QKHKTGARFSVRASAIEISS 96 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~ 96 (241)
.=.. ..+.-.|||+.-|+
T Consensus 80 fFP~--NaVEYFVSYYDYYQ 97 (663)
T COG0556 80 FFPE--NAVEYFVSYYDYYQ 97 (663)
T ss_pred hCcC--cceEEEeeeccccC
Confidence 5432 35566899999993
No 35
>PRK09087 hypothetical protein; Validated
Probab=91.15 E-value=0.16 Score=44.39 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=28.4
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||..+....+..+|.. +.....-.+..++-||++||||||-+.
T Consensus 18 ~~~~~Fi~~~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 18 YGRDDLLVTESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CChhceeecCchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 567766662334447762 222222224458999999999999995
No 36
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=91.04 E-value=0.52 Score=47.90 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852 135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG 174 (241)
Q Consensus 135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~ 174 (241)
+-++.-+|++--+ +.|.+|++||||.-..+.-.++.+
T Consensus 139 il~snpiLEAFGN---AkT~rN~NSSRFGK~i~l~f~~~g 175 (693)
T cd01377 139 ILQANPILEAFGN---AKTVRNDNSSRFGKFIRIHFGNTG 175 (693)
T ss_pred HHHHHHHHHHhhc---cccCCCCCccccceeEEEEECCCC
Confidence 4455667773334 679999999999877776666543
No 37
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.83 E-value=0.15 Score=51.03 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=33.1
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
|+||..+-...++..|. .+..+++..-..+|. ++-||.+|+||||-+..
T Consensus 285 ~TFDnFvvG~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 285 YTFDTFVIGASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCHhhhcCCCccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 67777665333445664 445555543345675 89999999999999864
No 38
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=90.33 E-value=1.4 Score=44.76 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=19.7
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 489999999999999999988
No 39
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.18 E-value=0.18 Score=48.41 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=31.2
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
|+||...-...+...|.. +..+.+. -..+|. ++-||++|+||||-+..
T Consensus 102 ~tFdnFv~g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CcccccccCCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 667776653445566664 3333332 112564 99999999999999873
No 40
>PRK12377 putative replication protein; Provisional
Probab=90.02 E-value=0.3 Score=43.48 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=33.2
Q ss_pred ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+||.... ...|..++. .+..+++.+..+. ..++-+|++|+||||.+..
T Consensus 72 tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 4554444 456666775 4666777666554 4688899999999999864
No 41
>PRK05642 DNA replication initiation factor; Validated
Probab=89.94 E-value=0.25 Score=43.19 Aligned_cols=18 Identities=17% Similarity=0.480 Sum_probs=15.7
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++-||++|+||||-+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 457899999999999884
No 42
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.81 E-value=0.28 Score=44.95 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred cceecC-CCChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeec
Q psy9852 4 FDAIFS-DEPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 4 FD~VF~-~a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-|++-+ -...++-.+.+ ...+...+. +...+++.||++|+|||+++.
T Consensus 10 ~~~~p~~l~gRe~e~~~l-~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEEL-AKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCCCCCCcHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 344444 34445555433 333444444 445678999999999999883
No 43
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=89.44 E-value=0.91 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.7
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|.|.||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 489999999999999999988
No 44
>PRK08116 hypothetical protein; Validated
Probab=89.31 E-value=0.29 Score=43.85 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=31.1
Q ss_pred ecceecCCCChHHHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcceeec
Q psy9852 3 AFDAIFSDEPQSEICTSALSDVIQAVIS--GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 3 ~FD~VF~~a~Qe~Vy~~~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+||.......++..|. .+...++.+.+ ..+..++-||++|+||||-+.
T Consensus 83 tFdnf~~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 83 TFENFLFDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred chhcccCChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 4554322444555665 45666666543 334568999999999999985
No 45
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.24 E-value=0.24 Score=47.46 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=29.9
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
|+||.......+...|. .+..+.+.--..+| .++-||++|+||||.+..
T Consensus 119 ~tfd~fv~g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 119 YTFDNFVVGKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CcccccccCCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 56666444334555665 34444443212344 478899999999999853
No 46
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=89.21 E-value=0.82 Score=46.31 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.7
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 489999999999999999987
No 47
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.15 E-value=0.36 Score=42.16 Aligned_cols=45 Identities=13% Similarity=0.374 Sum_probs=27.3
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||..+.. .+...+. .+..+.. ......++-||++|+||||.+.
T Consensus 19 ~~fd~f~~~-~n~~a~~-~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 19 ETFASFYPG-DNDSLLA-ALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCccccccC-ccHHHHH-HHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 445543334 4555664 3343332 2222478999999999999984
No 48
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=89.05 E-value=0.73 Score=47.04 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 589999999999999999988
No 49
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.05 E-value=0.36 Score=44.73 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeec
Q psy9852 11 EPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~ 51 (241)
...++-.+.. ...+...+. +....++-||+.|+|||+++.
T Consensus 33 ~~Re~e~~~l-~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 33 PHREEQIEEL-AFALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3344444433 333334443 444668999999999999874
No 50
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.98 E-value=0.29 Score=37.13 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+...+.......++.+|++|+|||+.+
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333333334456889999999999876
No 51
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.95 E-value=0.19 Score=48.99 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-...+..++..-++-|+.-|+||||||.||+
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 3445567778888999999999999999994
No 52
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=88.67 E-value=1.1 Score=45.55 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852 135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG 174 (241)
Q Consensus 135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~ 174 (241)
+-++.-+|++--+ +.|.+|++||||.-..+.-.+..+
T Consensus 130 il~snpiLEAFGN---AkT~~N~NSSRFGK~~~l~f~~~g 166 (691)
T cd01380 130 VLASNPIMEAFGN---AKTTRNDNSSRFGKYIQILFDKRG 166 (691)
T ss_pred HHHHHHHHHHhhc---CCCCCCCCccccceEEEEEECCCC
Confidence 3456677773333 679999999999877666655543
No 53
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.65 E-value=0.31 Score=45.88 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=28.3
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||...-...+...|. .+..+.+.--..+| .++-||++|+||||.+.
T Consensus 107 ~tfd~fi~g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CcccccccCCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 55655333334555664 34444443111234 47889999999999985
No 54
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=88.53 E-value=0.69 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.7
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999987
No 55
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.71 E-value=0.67 Score=41.12 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=30.6
Q ss_pred ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+||...- ...|..++. .+...++....+. ..++-+|.+|+||||.+..
T Consensus 70 tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 70 SFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred ccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3554433 445656665 3455555554443 3688999999999999853
No 56
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.53 E-value=0.44 Score=38.30 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=20.3
Q ss_pred HHHHHHhcC-CCEEEEcccccCCCcceeecc
Q psy9852 23 DVIQAVISG-SDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 23 plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G 52 (241)
.+++.+-.. ....++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 333333333 355667778999999999974
No 57
>PRK06526 transposase; Provisional
Probab=85.98 E-value=0.36 Score=42.99 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=25.2
Q ss_pred EEEcccccCCCcceeeccCCCCCCCCC--chHHHHHHHHHHHHh
Q psy9852 35 CLFCFGHARLGKSYTMVGSPQSSATLG--VIPSAISWLFRCISE 76 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~G~~~~~~~~G--Iipr~~~~LF~~i~~ 76 (241)
.++.+|++|+||||.+.+-.......| ++...+.++++.+..
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~ 143 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA 143 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHH
Confidence 478999999999999874321100112 233445566666553
No 58
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.84 E-value=0.59 Score=43.90 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=19.9
Q ss_pred HHHHhcCCC-EEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSD-GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n-~ti~aYGqtgSGKTyTm~ 51 (241)
+..++.|.- ..++.||.+|+|||.++.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence 444455444 449999999999999874
No 59
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.73 E-value=0.49 Score=45.58 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=31.1
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
|+||......+++..|. .+..+.+.--..+| .++-||++|+||||.|..
T Consensus 112 ~tFdnFv~g~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 112 NTFENFVIGSSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred cchhcccCCCcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 57777665334556664 44544432111234 488999999999999964
No 60
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.54 E-value=0.48 Score=45.24 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=38.1
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceeeccCCC----CCCCCCchHHHHHHHH
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTMVGSPQ----SSATLGVIPSAISWLF 71 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G~~~----~~~~~GIipr~~~~LF 71 (241)
|+||......++...|. .+.. +...-.+ || -+|-||.+|+||||-|.--.. ......+++.+.++.+
T Consensus 84 ytFdnFv~g~~N~~A~a-a~~~-va~~~g~~~n-plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 84 YTFDNFVVGPSNRLAYA-AAKA-VAENPGGAYN-PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred CchhheeeCCchHHHHH-HHHH-HHhccCCcCC-cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 66777666455555554 2222 2222222 45 588999999999999973221 1223455665555544
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.81 E-value=1 Score=38.61 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=27.0
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++||.+..... +.+.. .+..++.. ......++-||++|+||||-+
T Consensus 15 ~~~d~f~~~~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 15 PTFDNFVAGEN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred hhhcccccCCc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 45666654122 22333 34444432 233457899999999999988
No 62
>PRK08181 transposase; Validated
Probab=82.48 E-value=1.3 Score=39.82 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=27.5
Q ss_pred cCCCEEEEcccccCCCcceeeccCCCCCCCCC--chHHHHHHHHHHHHh
Q psy9852 30 SGSDGCLFCFGHARLGKSYTMVGSPQSSATLG--VIPSAISWLFRCISE 76 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~G--Iipr~~~~LF~~i~~ 76 (241)
.+.| ++-||++|+||||-+.+-...-...| ++...+.+|++.+..
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4544 88999999999999875431100123 344445666666644
No 63
>PF13245 AAA_19: Part of AAA domain
Probab=82.47 E-value=0.55 Score=34.05 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=16.7
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
|...+.+ +..++.-|+.|||||+|+
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHH
Confidence 3334442 333455899999999988
No 64
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.44 E-value=0.41 Score=35.84 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=15.1
Q ss_pred EEcccccCCCcceeeccC
Q psy9852 36 LFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~G~ 53 (241)
++.+|++|+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 567899999999998653
No 65
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.34 E-value=1.1 Score=41.45 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 15 EICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 15 ~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
.+++ .+...++.+-... -.++-||++|+||||-+..
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 4444 3455677665544 5699999999999998854
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.29 E-value=0.38 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.1
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
..+++.+|++|+|||..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 346889999999999988
No 67
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.80 E-value=1.3 Score=37.61 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
......|+-||++|+||||.+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHH
Confidence 456678999999999999988
No 68
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.66 E-value=1.1 Score=40.91 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceeeccC
Q psy9852 12 PQSEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 12 ~Qe~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm~G~ 53 (241)
.+..++.. +...++....| ..-.++-||++|+||||-+.+-
T Consensus 135 ~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 135 DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 45556653 35556554433 2346999999999999999643
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.36 E-value=0.49 Score=35.29 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.3
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++-+|++|||||..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 357889999999999984
No 70
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.20 E-value=1.1 Score=43.14 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=30.3
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHH--hcC--CCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAV--ISG--SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~v--l~G--~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||...-...++..|. .+..+.+.. ..| || -++-||++|+||||-+.
T Consensus 108 ~tFdnFv~g~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 108 MTFANFLVTPENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ccccceeeCCcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 67777665345555564 344444322 223 44 37789999999999985
No 71
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.75 E-value=1.5 Score=39.00 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
...+..++. .+..+++.+-++.| ++-||+.|+||||-...
T Consensus 85 ~~~~~~~l~-~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 85 PGIDKKALE-DLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cchhHHHHH-HHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 445667776 35666666554444 67899999999998853
No 72
>PRK10436 hypothetical protein; Provisional
Probab=80.35 E-value=0.75 Score=44.60 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=22.0
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..++..-.+.|+.-|+||||||.||+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445556667889999999999999994
No 73
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.29 E-value=1.2 Score=37.35 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCEEEEcccccCCCcceeecc
Q psy9852 32 SDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~G 52 (241)
..-.++-+|++|+||||...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH
Confidence 345689999999999998853
No 74
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.92 E-value=0.6 Score=40.04 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.+...|.||||||+|+
T Consensus 24 ~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTV 40 (229)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34567899999999999
No 75
>PF12846 AAA_10: AAA-like domain
Probab=79.55 E-value=0.6 Score=40.75 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.1
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999885
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.45 E-value=0.82 Score=38.16 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..+.+.+-.|.+..++.||+.|+|||+.|.
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 3344444445667889999999999999875
No 77
>PRK08727 hypothetical protein; Validated
Probab=79.37 E-value=0.72 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.4
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++-||++|+||||-+.
T Consensus 43 ~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL 59 (233)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999999884
No 78
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.35 E-value=0.76 Score=45.52 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3455666677889999999999999983
No 79
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.32 E-value=0.92 Score=44.19 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..-.+.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4445566666788899999999999994
No 80
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.12 E-value=1.8 Score=45.57 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHhc--CCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVIS--GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~--G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..++. |-+.+++.||++|+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33344443 44456789999999999998
No 81
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.92 E-value=0.97 Score=38.36 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=18.5
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..++...+-.++..|+.|+||||+|.
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 344444444445568999999999983
No 82
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=78.88 E-value=0.99 Score=41.78 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|.+..++.--...|+..|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 44455554445778899999999999994
No 83
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=78.83 E-value=0.87 Score=40.13 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.7
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
.+.|+.-|++|||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 566777899999999998
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=78.76 E-value=0.62 Score=35.52 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
|+-||+.|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998763
No 85
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=78.18 E-value=1.1 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+++.++. .++.++..|+||||||.||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 3344433 4556888999999999999
No 86
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=78.14 E-value=1.1 Score=35.77 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
++.+.+|.+ ++..|+||+|||.....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 344555655 67889999999998853
No 87
>PF13479 AAA_24: AAA domain
Probab=77.60 E-value=0.9 Score=39.00 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.3
Q ss_pred CEEEEcccccCCCcceeeccC
Q psy9852 33 DGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~G~ 53 (241)
+..++.||++|+|||+....-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 456899999999999887544
No 88
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=77.52 E-value=1.4 Score=40.98 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..|+.+|+.++.-+.. -....+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35688999876555433 33456788999999999986
No 89
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.35 E-value=0.8 Score=38.85 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.4
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
+.|+..|++|||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467788999999999983
No 90
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=76.09 E-value=0.87 Score=36.92 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
++....+....++.+|+.|+|||+.+.
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHHH
Confidence 333345666789999999999998773
No 91
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=75.83 E-value=1.4 Score=41.33 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=18.8
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.--...|+..|+||||||.||
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHH
Confidence 34435678899999999999999
No 92
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.61 E-value=2 Score=38.66 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.4
Q ss_pred CCCEEEEcccccCCCcceeec
Q psy9852 31 GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+....++-||++|+|||+++.
T Consensus 34 ~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 443458889999999998773
No 93
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.08 E-value=1.4 Score=39.34 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=20.4
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..++..-.+.|+-.|+||||||.+|.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 445555555678888999999999993
No 94
>PRK09183 transposase/IS protein; Provisional
Probab=75.03 E-value=1.7 Score=38.66 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.0
Q ss_pred EEEcccccCCCcceeecc
Q psy9852 35 CLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~G 52 (241)
.++-+|++|+||||-+..
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 466799999999998853
No 95
>PRK06921 hypothetical protein; Provisional
Probab=74.48 E-value=3.3 Score=37.05 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=21.7
Q ss_pred HHHHHHHHhc---CCCEEEEcccccCCCcceeecc
Q psy9852 21 LSDVIQAVIS---GSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 21 v~plV~~vl~---G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+...++.+-. +..-.++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4445554432 2344688999999999999853
No 96
>KOG1514|consensus
Probab=74.21 E-value=5.3 Score=40.74 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=22.8
Q ss_pred HHHHHHHHh--cCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVI--SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl--~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...++.++ +|-.+|+..-|..|+|||+|+
T Consensus 408 I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV 439 (767)
T KOG1514|consen 408 IEDFLRSFISDQGLGSCMYISGVPGTGKTATV 439 (767)
T ss_pred HHHHHHhhcCCCCCceeEEEecCCCCCceehH
Confidence 344444444 367779999999999999999
No 97
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.90 E-value=2.1 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+.|.++.+.--.-+.|+..|.|||||+.||.
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566666666677788899999999999985
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.73 E-value=2 Score=37.36 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=17.4
Q ss_pred hcCCCEEEEcccccCCCcceeec
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+.-....++.+|++|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 33334567889999999998874
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.29 E-value=1.4 Score=40.83 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.4
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++-||++|+|||+.+.
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998775
No 100
>KOG0989|consensus
Probab=72.25 E-value=2.7 Score=38.95 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceee
Q psy9852 14 SEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 14 e~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm 50 (241)
+.+++..+..++...+.+ .--..+-||+.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 334444444444444444 4455788999999999997
No 101
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=72.17 E-value=2.6 Score=37.70 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=32.6
Q ss_pred CCCEEEEcccccCCCcceeeccC------C-----------CC--CCCCCchHHHHHHHHHHHHhcc
Q psy9852 31 GSDGCLFCFGHARLGKSYTMVGS------P-----------QS--SATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~G~------~-----------~~--~~~~GIipr~~~~LF~~i~~~~ 78 (241)
.-..+|.-+|+.|||||+-|--- . .+ ....-+....+..|+..+....
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~~ 84 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKHF 84 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHhc
Confidence 45778999999999999988421 0 00 1124566777788888777653
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=71.72 E-value=1.5 Score=41.28 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred EEEEcccccCCCcceeeccCCC--------------CCCCCCchHHHHHHHHHHHHh
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQ--------------SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~--------------~~~~~GIipr~~~~LF~~i~~ 76 (241)
..|+-||++|+|||+..---.. .....|-.++.+..+|+....
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELARE 222 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHh
Confidence 4588999999999986532110 001123345667777876654
No 103
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=71.42 E-value=1.5 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=12.5
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
..+..|+.|+|||+++.
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 45668999999998873
No 104
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=70.66 E-value=1.8 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3678899999999865
No 105
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.35 E-value=1.5 Score=37.52 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.2
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 35667999999999984
No 106
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=70.33 E-value=3.6 Score=36.68 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcceeec
Q psy9852 10 DEPQSEICTSALSDVIQAVIS--GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-..|+++-+. +...+..... +....++-||+.|+|||+...
T Consensus 6 ~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4566666653 4444443322 222347789999999998874
No 107
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.01 E-value=2.8 Score=38.66 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++..++.+. ..++..|.||||||.+|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555543 45666699999999877
No 108
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=69.65 E-value=4.8 Score=38.42 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=43.8
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhc--C--CCEEEEcccccCCCcceeec------cCC--------CCCCCCCc
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVIS--G--SDGCLFCFGHARLGKSYTMV------GSP--------QSSATLGV 62 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~--G--~n~ti~aYGqtgSGKTyTm~------G~~--------~~~~~~GI 62 (241)
+.||.+.+ ----..+.+..+..+.+..+. | .---++.||+.|+|||+... |.. --....|=
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 45566555 222333444455555555553 2 22347789999999998732 221 01123455
Q ss_pred hHHHHHHHHHHHHhc
Q psy9852 63 IPSAISWLFRCISEQ 77 (241)
Q Consensus 63 ipr~~~~LF~~i~~~ 77 (241)
--+.+.++|+.+...
T Consensus 192 sEk~IR~~F~~A~~~ 206 (413)
T PLN00020 192 PGKLIRQRYREAADI 206 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888999887653
No 109
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=69.41 E-value=1.2 Score=33.93 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=13.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+-||++|+|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 467999999999988
No 110
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=69.20 E-value=1.8 Score=38.02 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.7
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 56677888999999999995
No 111
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=68.66 E-value=1.9 Score=33.54 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
|+..|.+|||||+...
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998653
No 112
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=68.45 E-value=2.9 Score=34.92 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+++...+.. ...+.--|++|||||.++.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444444443 3356677999999998774
No 113
>PHA00729 NTP-binding motif containing protein
Probab=68.14 E-value=4.4 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
...++.+..+--..|+.+|.+|+||||-..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 445555555433579999999999998764
No 114
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.96 E-value=3.4 Score=40.74 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCC--EEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSD--GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n--~ti~aYGqtgSGKTyTm~ 51 (241)
|...++..+.|.. ..++.+|++|||||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 5566666665553 457889999999999984
No 115
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.83 E-value=2.4 Score=38.60 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..++..++.+ ...++.-|.+|||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3445555554 456778899999999998
No 116
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=67.50 E-value=2 Score=35.84 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
+.++-+|++|+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788899999999966
No 117
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=66.62 E-value=3.4 Score=35.85 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.8
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+-.+++.|+.|||||+...
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 34478999999999998764
No 118
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.28 E-value=2.4 Score=33.20 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=13.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+.+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 119
>PRK06547 hypothetical protein; Provisional
Probab=65.10 E-value=5.8 Score=33.09 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=18.0
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..+..+----|...|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3344444444444566699999999865
No 120
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=64.98 E-value=4.3 Score=37.57 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..++..++.+. ..|+.-|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34444444433 346778999999999983
No 121
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=64.83 E-value=2 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++.+|.+|||||.++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 6899999999999988
No 122
>PLN03025 replication factor C subunit; Provisional
Probab=64.73 E-value=4.8 Score=36.57 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.3
Q ss_pred CCCEEEEcccccCCCcceeec
Q psy9852 31 GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|.-..++-||+.|+|||++..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 444457779999999998775
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.11 E-value=3.9 Score=32.49 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=14.9
Q ss_pred EEEcccccCCCcceeeccC
Q psy9852 35 CLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~G~ 53 (241)
.++..|++|+|||.++...
T Consensus 26 ~~~i~~~~GsGKT~~~~~~ 44 (201)
T smart00487 26 DVILAAPTGSGKTLAALLP 44 (201)
T ss_pred cEEEECCCCCchhHHHHHH
Confidence 4567789999999977643
No 124
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.06 E-value=6.7 Score=37.23 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.4
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...|+.+|++|+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578889999999999984
No 125
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=63.46 E-value=5.2 Score=35.54 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=16.6
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|....++-||+.|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454455788999999999776
No 126
>KOG0953|consensus
Probab=63.22 E-value=5.4 Score=39.81 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred EEEcccccCCCcceeec---cCCCCCCCCCchHHHHHHHHHHHHhcc
Q psy9852 35 CLFCFGHARLGKSYTMV---GSPQSSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~---G~~~~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
-|+.-|+|+|||||.-. +....+...|-+-..+.++|++.....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~g 239 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALG 239 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcC
Confidence 37889999999999876 334444456778888889999987653
No 127
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=62.91 E-value=11 Score=33.46 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=28.2
Q ss_pred cC-CCChHHHHHHHHHHHHHHHhcC--CCEEEEcccccCCCcceee
Q psy9852 8 FS-DEPQSEICTSALSDVIQAVISG--SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 8 F~-~a~Qe~Vy~~~v~plV~~vl~G--~n~ti~aYGqtgSGKTyTm 50 (241)
|+ -..|+.+-. ....+++.+... .=..++-||+.|+|||.-.
T Consensus 23 L~efiGQ~~l~~-~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKG-NLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHH-HHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHh-hhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 45 578988886 467788877642 2346889999999998544
No 128
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=62.86 E-value=5.1 Score=40.48 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+..|.+|||||.++
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 488999999999999999885
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.53 E-value=4 Score=38.80 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH-HHhc--C--CCEEEEcccccCCCcceeeccCCC---C-----------CCCCCchHHHHHHHHHHH
Q psy9852 14 SEICTSALSDVIQ-AVIS--G--SDGCLFCFGHARLGKSYTMVGSPQ---S-----------SATLGVIPSAISWLFRCI 74 (241)
Q Consensus 14 e~Vy~~~v~plV~-~vl~--G--~n~ti~aYGqtgSGKTyTm~G~~~---~-----------~~~~GIipr~~~~LF~~i 74 (241)
+++-+.+..|+.. ..+. | ....++-||++|+|||+...--.. . ....|--++.+.++|..+
T Consensus 155 ~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A 234 (398)
T PTZ00454 155 QEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA 234 (398)
T ss_pred HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH
Confidence 4444444445542 2333 2 235688999999999987632110 0 011233456677788776
Q ss_pred Hhc
Q psy9852 75 SEQ 77 (241)
Q Consensus 75 ~~~ 77 (241)
...
T Consensus 235 ~~~ 237 (398)
T PTZ00454 235 REN 237 (398)
T ss_pred Hhc
Confidence 543
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=61.55 E-value=3 Score=36.76 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.4
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-||++|+|||+..
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 356788999999999887
No 131
>KOG0736|consensus
Probab=61.45 E-value=12 Score=38.97 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCCCCchHHHHHHHHHHHHhccc
Q psy9852 57 SATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 57 ~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+.+-|++-|++.+|...++...+
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 35789999999999999998765
No 132
>PRK04195 replication factor C large subunit; Provisional
Probab=60.90 E-value=7 Score=37.78 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCC-CEEEEcccccCCCcceeec
Q psy9852 20 ALSDVIQAVISGS-DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 20 ~v~plV~~vl~G~-n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..+++....|. .-.++.||+.|+|||+...
T Consensus 25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3455555555554 4568899999999998774
No 133
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.72 E-value=3.8 Score=37.92 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++..++..- ..|+.-|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3444444432 35778899999999998
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=60.56 E-value=6 Score=35.40 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=68.8
Q ss_pred HHHHhcCCCEE-EEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccCCCcEEEEEEEEEEEeCCCCeEEE
Q psy9852 25 IQAVISGSDGC-LFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKD 103 (241)
Q Consensus 25 V~~vl~G~n~t-i~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~D 103 (241)
...+++|..+. ++.||..|+|||.++ +.+....... + +..+||. .+.+.|
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlV-----------------kall~~y~~~----G------LRlIev~--k~~L~~ 93 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLV-----------------KALLNEYADQ----G------LRLIEVS--KEDLGD 93 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHH-----------------HHHHHHHhhc----C------ceEEEEC--HHHhcc
Confidence 46788888754 788999999998877 1233332222 1 5678888 666555
Q ss_pred cCCCCCCCceEEEccCCc-EEecCcEEEeC--CCHHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeC
Q psy9852 104 LLSTYSNGKFFRLCFLKR-FHAEEDEEMPC--PVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHD 171 (241)
Q Consensus 104 LL~~~~~~~~l~~~~~~g-~~v~glt~v~V--~s~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~ 171 (241)
|-.-- ..++..+.+- +++.+|+ .+- .++..+.++|+|.-..++......+.|.|.-.+.|...|
T Consensus 94 l~~l~---~~l~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 94 LPELL---DLLRDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred HHHHH---HHHhcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 42000 0111112112 2556665 222 346778889996667778888899999985555554433
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.09 E-value=6.2 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=16.3
Q ss_pred cCC-CEEEEcccccCCCcceeec
Q psy9852 30 SGS-DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 30 ~G~-n~ti~aYGqtgSGKTyTm~ 51 (241)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 3456669999999998774
No 136
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.79 E-value=3.6 Score=31.03 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=12.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+-.|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999765
No 137
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=59.44 E-value=3.3 Score=37.29 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999999
No 138
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=58.58 E-value=3.5 Score=34.72 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=14.5
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.-..++..|+.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34568888999999998763
No 139
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=58.42 E-value=3.3 Score=38.63 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.++..++.+ ...|+.-|+||||||.+|.
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 344444432 3457788999999999985
No 140
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=58.10 E-value=8.3 Score=40.09 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 355678999998877 9999999764
No 141
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=58.06 E-value=14 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=25.3
Q ss_pred HHHHHHHHhcC---CCEEEEcc-cccCCCcceeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 21 LSDVIQAVISG---SDGCLFCF-GHARLGKSYTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 21 v~plV~~vl~G---~n~ti~aY-GqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
+...|..-+.. ....|+.+ |++|+||+|.- ...++.||..
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~-------------~liA~~ly~~ 80 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS-------------RLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH-------------HHHHHHHHhc
Confidence 34444444443 22456666 99999999976 4566667764
No 142
>PRK04328 hypothetical protein; Provisional
Probab=57.68 E-value=7.4 Score=34.20 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.2
Q ss_pred HHHHHHhcC---CCEEEEcccccCCCccee
Q psy9852 23 DVIQAVISG---SDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 23 plV~~vl~G---~n~ti~aYGqtgSGKTyT 49 (241)
|-++.++.| ....++.+|++|+|||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456777776 578899999999999753
No 143
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=57.37 E-value=7.4 Score=37.05 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=18.0
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+++|.| +++.++||||||..
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 455678887 56777999999965
No 144
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.35 E-value=4.3 Score=38.08 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.2
Q ss_pred CEEEEcccccCCCccee
Q psy9852 33 DGCLFCFGHARLGKSYT 49 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyT 49 (241)
.+.|+..|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35689999999999864
No 145
>PRK10536 hypothetical protein; Provisional
Probab=57.24 E-value=6.3 Score=35.54 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.2
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
.-++..|++||||||...
T Consensus 75 ~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 75 QLIFATGEAGCGKTWISA 92 (262)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 478999999999998653
No 146
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=57.11 E-value=4.3 Score=37.81 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
....||+|||||++-+-
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34679999999988664
No 147
>PHA02244 ATPase-like protein
Probab=56.98 E-value=12 Score=35.53 Aligned_cols=21 Identities=29% Similarity=0.244 Sum_probs=15.3
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+-.+.+ |+-+|++|+|||+-.
T Consensus 116 l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 116 VNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HhcCCC--EEEECCCCCCHHHHH
Confidence 334554 566899999999765
No 148
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=56.89 E-value=6.8 Score=32.40 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.++.|.| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345555777 567789999999773
No 149
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=56.85 E-value=3.5 Score=32.13 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4678999999999773
No 150
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=56.75 E-value=9.1 Score=38.89 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=19.4
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 589999999999999999876
No 151
>PTZ00424 helicase 45; Provisional
Probab=56.55 E-value=7.7 Score=35.86 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..+++|.|. +..++||||||...
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345667889885 45689999999754
No 152
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.45 E-value=6.9 Score=37.02 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 11 EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..|+.+... ..++...+-.+.-..++-||+.|+|||+...
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 345444432 2234444445555577789999999998765
No 153
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=55.98 E-value=9.3 Score=34.73 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+.+++...+.+- .+++--|++|||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445555655544 356667999999999764
No 154
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=55.73 E-value=9.6 Score=34.71 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcceeec
Q psy9852 10 DEPQSEICTSALSDVIQAVIS--GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-..|+++-+. +..++..... +-...++-||++|+|||+.+.
T Consensus 27 ~vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 27 FIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred hcCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 3455555543 3444443322 222357889999999998764
No 155
>PRK13764 ATPase; Provisional
Probab=55.56 E-value=5.4 Score=40.05 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=16.6
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34558999999999999983
No 156
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.93 E-value=6.4 Score=35.34 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.1
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
+-.++-.|++|||||..+.
T Consensus 33 ~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp TEEEEEESSTTSSHHHHHH
T ss_pred CCcEEEECCCCCchhHHHH
Confidence 5567889999999998874
No 157
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=54.88 E-value=8 Score=35.35 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-+.+.-...-+.-++.+|+.|||||.+|.
T Consensus 13 ~l~~~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 13 KLKEADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred HHHHhcccCCceEEEEECCCCCCHHHHHH
Confidence 33333444667779999999999999886
No 158
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.83 E-value=7.7 Score=36.51 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++|.|. ++-++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 4557889875 55669999999753
No 159
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.76 E-value=4.4 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...++-.|++|+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466778999999999984
No 160
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=54.75 E-value=8.8 Score=32.70 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISG---SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G---~n~ti~aYGqtgSGKTyTm 50 (241)
+-++.++.| ....+.-+|++|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456677775 4567888999999998765
No 161
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=54.16 E-value=4.7 Score=36.92 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=29.7
Q ss_pred EEEEcccccCCCcceeecc---CCCC-----------CCCCCchHHHHHHHHHHHHhcc
Q psy9852 34 GCLFCFGHARLGKSYTMVG---SPQS-----------SATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G---~~~~-----------~~~~GIipr~~~~LF~~i~~~~ 78 (241)
-+|+-||++|+|||++--- .... +..-|=--|-+.+||++..+..
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 4689999999999987532 2110 1233445677888888877654
No 162
>PF05729 NACHT: NACHT domain
Probab=54.06 E-value=4.7 Score=31.66 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=13.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678899999999987
No 163
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=53.67 E-value=13 Score=37.83 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 489999999999999999876
No 164
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=53.20 E-value=9.6 Score=38.26 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++..+..++...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 445555677778999999999999865
No 165
>KOG3859|consensus
Probab=52.91 E-value=6.6 Score=36.19 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=23.2
Q ss_pred HHH-HHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVI-QAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV-~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|| .++-+||.-.|+|.|.||.|||.-|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 444 4567899999999999999999755
No 166
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.55 E-value=12 Score=33.67 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 18 TSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 18 ~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-....||+ ..+.--+..+-.||++++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 34455666 4455666778889999999998765
No 167
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=52.46 E-value=14 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.4
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 489999999999999999886
No 168
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.32 E-value=10 Score=35.81 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.0
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ +++.++||||||..
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3456678877 67788999999976
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=51.95 E-value=47 Score=31.37 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCEEEEcccccCCCcc---------------------eeecc----CCCCCCCCCchHHHHHHHHHH
Q psy9852 32 SDGCLFCFGHARLGKS---------------------YTMVG----SPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKT---------------------yTm~G----~~~~~~~~GIipr~~~~LF~~ 73 (241)
....+.-.|+.||||| |++-| ++--+.-.|++|......|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 3455778899999997 44545 332223467777777766643
No 170
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=51.92 E-value=13 Score=37.89 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.2
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999875
No 171
>KOG2543|consensus
Probab=51.92 E-value=4.8 Score=38.44 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=15.4
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+-||.+||||||++.
T Consensus 31 S~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eeEEEeccCCCchhHHHH
Confidence 446899999999999875
No 172
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=51.85 E-value=5 Score=35.10 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.1
Q ss_pred CEEEEcccccCCCcceeeccC
Q psy9852 33 DGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~G~ 53 (241)
...++-||..|+|||+..-.-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 346899999999999987443
No 173
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.77 E-value=4.9 Score=36.56 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=11.4
Q ss_pred ccccCCCcceeec
Q psy9852 39 FGHARLGKSYTMV 51 (241)
Q Consensus 39 YGqtgSGKTyTm~ 51 (241)
.|++|||||.||-
T Consensus 33 iGpSGsGKTTtLk 45 (309)
T COG1125 33 IGPSGSGKTTTLK 45 (309)
T ss_pred ECCCCCcHHHHHH
Confidence 4999999999983
No 174
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=51.65 E-value=10 Score=38.32 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHHHHHHHHhc-----CCCEEEEcccccCCCcceeecc
Q psy9852 20 ALSDVIQAVIS-----GSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 20 ~v~plV~~vl~-----G~n~ti~aYGqtgSGKTyTm~G 52 (241)
.+..+++.+.. |....+ ..-+||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gl-i~~~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGL-IWHTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeE-EEEecCCCccHHHHH
Confidence 46677777766 334444 445999999999953
No 175
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=51.60 E-value=14 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.4
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|||||.+.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999886
No 176
>KOG0727|consensus
Probab=51.58 E-value=5.7 Score=36.25 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHh-c--CCC--EEEEcccccCCCcceeec--------------cCCCCCCCCCchHHHHHHHHHH
Q psy9852 13 QSEICTSALSDVIQAVI-S--GSD--GCLFCFGHARLGKSYTMV--------------GSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 13 Qe~Vy~~~v~plV~~vl-~--G~n--~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GIipr~~~~LF~~ 73 (241)
-++|-+..-.|+...=+ . |.+ --|+.||+.|+|||--.- |+.---...|==||.+.++|+.
T Consensus 164 kqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrl 243 (408)
T KOG0727|consen 164 KQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 243 (408)
T ss_pred HHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHH
Confidence 34555544445544321 1 443 348999999999974321 2210001345569999999998
Q ss_pred HHhccc
Q psy9852 74 ISEQKH 79 (241)
Q Consensus 74 i~~~~~ 79 (241)
..+...
T Consensus 244 akenap 249 (408)
T KOG0727|consen 244 AKENAP 249 (408)
T ss_pred HhccCC
Confidence 877643
No 177
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=51.39 E-value=24 Score=35.86 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=50.1
Q ss_pred ceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCch----HHHHHHHHHHHHhccc
Q psy9852 5 DAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI----PSAISWLFRCISEQKH 79 (241)
Q Consensus 5 D~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIi----pr~~~~LF~~i~~~~~ 79 (241)
..-|. .-.|...++ .+++.+-+|.... +.+|.||||||++|..--.....+-|| -..+.+|++.+...-.
T Consensus 5 ~~~~~~~~~Q~~ai~----~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 5 HSPFQPAGDQPKAIA----KLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred ccCCCCChHHHHHHH----HHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 33455 556755554 4555555664322 368999999999986432211112221 1245567777766532
Q ss_pred CCCcEEEEEEEEEEEeC
Q psy9852 80 KTGARFSVRASAIEISS 96 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~ 96 (241)
+..+...|||+.-|+
T Consensus 80 --~~~V~~f~sy~d~y~ 94 (655)
T TIGR00631 80 --ENAVEYFVSYYDYYQ 94 (655)
T ss_pred --CCeEEEEeeecccCC
Confidence 235778899999984
No 178
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=51.22 E-value=8.4 Score=36.15 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHhcCCCEEEEcccccCCCcceeec
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+.++. +.|+.-|-||||||.++.
T Consensus 168 ~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 168 RAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 333333 788999999999999875
No 179
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=50.85 E-value=14 Score=35.95 Aligned_cols=28 Identities=11% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..++..+..+-+ |+-||++|+|||+..
T Consensus 184 le~l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3445555555555 455999999999876
No 180
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.80 E-value=9 Score=41.28 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+..+++.+.+|....+ ..-+||||||+||..
T Consensus 422 I~ai~~a~~~g~r~~L-l~maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREIL-LAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeE-EEeCCCCCHHHHHHH
Confidence 4455566666765444 448999999999864
No 181
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=50.65 E-value=9 Score=32.12 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.4
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...+.-+|++|||||.-..
T Consensus 12 g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678889999999987643
No 182
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=49.94 E-value=12 Score=35.81 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.| +++-.+||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3556778887 567779999999763
No 183
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.41 E-value=12 Score=35.76 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.4
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
..-|.-.||||-|||.|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 4556667999999999984
No 184
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.02 E-value=15 Score=33.78 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.5
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+...|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 356666999999999874
No 185
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=49.01 E-value=6.6 Score=35.48 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.0
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|++-+||.-|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 377889999999999999754
No 186
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=48.91 E-value=6.8 Score=31.85 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
...+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45568899999999876
No 187
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=48.90 E-value=21 Score=31.15 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=23.5
Q ss_pred HHHHHHHHHhc--CCCEEEEcccccCCCcceeec
Q psy9852 20 ALSDVIQAVIS--GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 20 ~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..+.+.+.+ .-...|..+|..|.|||....
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~ 37 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLAR 37 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeee
Confidence 35556666666 566778899999999986553
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=48.52 E-value=17 Score=32.08 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
...++..+..|.+ |+-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 3344444445554 566899999999765
No 189
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=48.52 E-value=11 Score=38.59 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.8
Q ss_pred cCCCEEEEcccccCCCcceeec
Q psy9852 30 SGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+.-..++-||++|+|||+...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999998875
No 190
>PRK00131 aroK shikimate kinase; Reviewed
Probab=48.48 E-value=7.8 Score=30.97 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.3
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36888999999999874
No 191
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=48.34 E-value=6.2 Score=27.70 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
.+-.|++|||||.-|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999766
No 192
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=48.30 E-value=15 Score=36.16 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+...+.......++-||++|+|||+..
T Consensus 76 ~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 76 ALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3334455566678889999999998754
No 193
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=47.83 E-value=7.3 Score=30.77 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++..|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 566799999998764
No 194
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=47.19 E-value=16 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..-++.+-+|....-|..|.-||||||.+.
T Consensus 37 l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 37 LDRDLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 3444678889999999999999999999874
No 195
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=47.04 E-value=7.8 Score=31.65 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999864
No 196
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=46.99 E-value=13 Score=31.86 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
|-++.++. |+ ...++.+|.+|+|||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 44566665 42 567788899999997654
No 197
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=46.86 E-value=7.3 Score=30.62 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
+|+..|..|||||+-.
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4778899999998754
No 198
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=8.4 Score=36.55 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHH-Hhc--CCC--EEEEcccccCCCcceee--------------ccCCCCCCCCCchHHHHHHHHHHH
Q psy9852 14 SEICTSALSDVIQA-VIS--GSD--GCLFCFGHARLGKSYTM--------------VGSPQSSATLGVIPSAISWLFRCI 74 (241)
Q Consensus 14 e~Vy~~~v~plV~~-vl~--G~n--~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIipr~~~~LF~~i 74 (241)
+++.+.+-.||.+. .++ |.. --|+.||+.|+|||--. .|+.=--...|==+|.+.+||+..
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA 240 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA 240 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH
Confidence 56666666666533 333 554 34899999999998532 232200012333478889999887
Q ss_pred Hhcc
Q psy9852 75 SEQK 78 (241)
Q Consensus 75 ~~~~ 78 (241)
....
T Consensus 241 reka 244 (406)
T COG1222 241 REKA 244 (406)
T ss_pred hhcC
Confidence 7664
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=46.24 E-value=7.9 Score=37.52 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.8
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++.||++|+|||+.+.
T Consensus 90 giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAK 106 (495)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 58899999999998864
No 200
>PRK07261 topology modulation protein; Provisional
Probab=46.18 E-value=8.2 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|.+|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999998755
No 201
>PHA02653 RNA helicase NPH-II; Provisional
Probab=46.08 E-value=15 Score=37.39 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=17.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+++.+++|.+ ++..|+||||||.-
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 3444566665 58889999999975
No 202
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=45.77 E-value=17 Score=35.95 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..+..+++|.|+ ++--+||+|||....
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y~ 46 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCYQ 46 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHHH
Confidence 344567789885 444599999998753
No 203
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=45.64 E-value=6.8 Score=36.79 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=11.9
Q ss_pred cccccCCCcceeec
Q psy9852 38 CFGHARLGKSYTMV 51 (241)
Q Consensus 38 aYGqtgSGKTyTm~ 51 (241)
-.|++|||||.++-
T Consensus 36 lLGPSGcGKTTlLR 49 (352)
T COG3842 36 LLGPSGCGKTTLLR 49 (352)
T ss_pred EECCCCCCHHHHHH
Confidence 45999999999875
No 204
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=45.61 E-value=11 Score=35.12 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=14.1
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
++..|+||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999999875
No 205
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=45.60 E-value=8.5 Score=31.29 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=12.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577999999999855
No 206
>PRK14974 cell division protein FtsY; Provisional
Probab=45.38 E-value=24 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.6
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...|+-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3567788999999999874
No 207
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=45.26 E-value=18 Score=30.77 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHhc-CC--CEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVIS-GS--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~-G~--n~ti~aYGqtgSGKTyTm~ 51 (241)
-|-++.++. |+ ...+..+|++|+|||..+.
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 355677775 43 4567889999999987653
No 208
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.21 E-value=22 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.2
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567888999999999985
No 209
>KOG1547|consensus
Probab=45.20 E-value=26 Score=31.80 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHHHHH-HhcCCCEEEEcccccCCCcceee
Q psy9852 18 TSALSDVIQA-VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 18 ~~~v~plV~~-vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++++..+=.. +-.||.-.|+.-||+|.|||..+
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 3344444333 44599999999999999998654
No 210
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=45.12 E-value=7 Score=36.50 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.0
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||.++-
T Consensus 32 ~vllGPSGcGKSTlLr 47 (338)
T COG3839 32 VVLLGPSGCGKSTLLR 47 (338)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999874
No 211
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=44.84 E-value=18 Score=29.98 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=19.7
Q ss_pred ccCCc-EEecCcEEEeCCCHHHHHHHHH
Q psy9852 117 CFLKR-FHAEEDEEMPCPVPPPLHSNLL 143 (241)
Q Consensus 117 ~~~~g-~~v~glt~v~V~s~~d~~~ll~ 143 (241)
..++| +++.++...+...-..+.++|+
T Consensus 91 ~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 91 QANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp HTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred eccceEEeecchhhhHHHHHHHHHHHHh
Confidence 33444 4888988888888888888888
No 212
>KOG0354|consensus
Probab=44.81 E-value=16 Score=37.63 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 20 ALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 20 ~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.-..+++.+| |.|+-|.+ +||+|||+--
T Consensus 66 YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 66 YQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 3356788889 99976555 9999999854
No 213
>KOG0735|consensus
Probab=44.70 E-value=8.8 Score=39.56 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.0
Q ss_pred CCEEEEcccccCCCcceee
Q psy9852 32 SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm 50 (241)
..+.|+.||+.||||||-.
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 3466899999999999865
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=44.63 E-value=9 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=11.9
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+..|+.|||||.-
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999953
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.62 E-value=12 Score=38.21 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.6
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999764
No 216
>CHL00181 cbbX CbbX; Provisional
Probab=44.56 E-value=8.8 Score=34.70 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++-+|++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 217
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=44.43 E-value=8.9 Score=34.37 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.6
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999998765
No 218
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=44.38 E-value=7.3 Score=31.29 Aligned_cols=13 Identities=38% Similarity=0.350 Sum_probs=10.5
Q ss_pred EcccccCCCccee
Q psy9852 37 FCFGHARLGKSYT 49 (241)
Q Consensus 37 ~aYGqtgSGKTyT 49 (241)
+..|++|||||+.
T Consensus 2 ~l~G~~GsGKSTl 14 (163)
T TIGR01313 2 VLMGVAGSGKSTI 14 (163)
T ss_pred EEECCCCCCHHHH
Confidence 4569999999865
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=44.34 E-value=13 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.2
Q ss_pred EEEcccccCCCcceeecc
Q psy9852 35 CLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~G 52 (241)
.++..|+.|+|||+|+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456899999999999863
No 220
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=44.30 E-value=8.2 Score=30.01 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.5
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+...|++|||||..+
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34566799999999876
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.16 E-value=8.1 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.1
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++-.|++|+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55666999999999975
No 222
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.10 E-value=18 Score=34.73 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..+++|.|..+ -.+||||||...
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 34567889988654 459999999654
No 223
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=44.08 E-value=6.8 Score=36.69 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
-..|+++=...+..+|+. .-+.|+.+|.+|+|||+.+-.
T Consensus 19 ivGq~~~k~al~~~~~~p----~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP----KIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred HhChHHHHHHHHHhccCC----CCCeEEEEcCCCCCHHHHHHH
Confidence 456766555444444433 224578999999999998753
No 224
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=44.05 E-value=16 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ +++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 677889999999764
No 225
>PF13173 AAA_14: AAA domain
Probab=44.04 E-value=8 Score=30.05 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=14.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-+|+.++|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999988
No 226
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.99 E-value=17 Score=34.88 Aligned_cols=25 Identities=40% Similarity=0.437 Sum_probs=18.6
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|..+++|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567788875 55569999999754
No 227
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.97 E-value=12 Score=38.14 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeeccC
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~ 53 (241)
.+++-+.......++-||++|+|||+...|-
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 4444444455557789999999999988653
No 228
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=43.69 E-value=7.5 Score=37.50 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||...
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 229
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=43.47 E-value=8.2 Score=37.71 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=20.4
Q ss_pred cCCCEEEEcccccCCCcceeeccCCCCCCCCCchHH
Q psy9852 30 SGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPS 65 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr 65 (241)
.|.. .++.||+.|||||.... .-+||+|.
T Consensus 196 AGgH-nLl~~GpPGtGKTmla~------Rl~~lLPp 224 (490)
T COG0606 196 AGGH-NLLLVGPPGTGKTMLAS------RLPGLLPP 224 (490)
T ss_pred hcCC-cEEEecCCCCchHHhhh------hhcccCCC
Confidence 3444 27889999999998772 34677554
No 230
>CHL00176 ftsH cell division protein; Validated
Probab=43.41 E-value=12 Score=37.86 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.1
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
-.|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998754
No 231
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=43.14 E-value=8.4 Score=31.45 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.8
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999887
No 232
>PRK05580 primosome assembly protein PriA; Validated
Probab=43.13 E-value=12 Score=37.98 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=14.7
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++.+|+||||||....
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 348899999999997664
No 233
>CHL00195 ycf46 Ycf46; Provisional
Probab=42.57 E-value=8.6 Score=37.61 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=26.8
Q ss_pred EEEEcccccCCCcceeeccCCC--------------CCCCCCchHHHHHHHHHHHHhc
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQ--------------SSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~--------------~~~~~GIipr~~~~LF~~i~~~ 77 (241)
-.|+-||+.|||||+..---.. -....|--...+..+|+..+..
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~ 317 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEAL 317 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhc
Confidence 4599999999999876531110 0012344456677777766554
No 234
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.44 E-value=9.8 Score=34.23 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=14.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999865
No 235
>PRK06217 hypothetical protein; Validated
Probab=42.35 E-value=10 Score=31.41 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=12.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|.+|||||+--
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998643
No 236
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=42.33 E-value=20 Score=35.80 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=18.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|.++.+ -.+||+|||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 3556778888654 469999999753
No 237
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=42.00 E-value=21 Score=36.15 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=17.4
Q ss_pred hcCCCEEEEcccccCCCcceeec
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-.+....++..|+||||||....
T Consensus 278 ~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 278 ASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred hccCCceEEEECCCCCcHHHHHH
Confidence 34455578999999999997653
No 238
>PRK06696 uridine kinase; Validated
Probab=41.90 E-value=27 Score=29.87 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=18.9
Q ss_pred HHHHHHHHh---cCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVI---SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl---~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+.+.++ .+....|..-|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 344444444 344455666699999999843
No 239
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=41.83 E-value=10 Score=31.01 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.7
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||+-.
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998654
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=41.73 E-value=21 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHhc-CC--CEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVIS-GS--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~-G~--n~ti~aYGqtgSGKTyTm~ 51 (241)
-|-++.++. |+ ...+.-+|++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 355677775 43 3457788999999998654
No 241
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=41.31 E-value=21 Score=30.89 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHhc-CC--CEEEEcccccCCCcce
Q psy9852 24 VIQAVIS-GS--DGCLFCFGHARLGKSY 48 (241)
Q Consensus 24 lV~~vl~-G~--n~ti~aYGqtgSGKTy 48 (241)
-++.++. |+ ...++.+|++|||||.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 3455554 44 4678899999999986
No 242
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=41.25 E-value=24 Score=36.80 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 16 ICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 16 Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
||+ ....+++.+.++- .++..|+||||||..+.
T Consensus 6 i~~-~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 6 VAA-VLPELLTALKTAP--QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHH-HHHHHHHHHHhCC--CEEEEcCCCCCHHHHHH
Confidence 443 4556666665544 46778999999998764
No 243
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=41.07 E-value=8.7 Score=39.27 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.7
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456788899999999999
No 244
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=41.03 E-value=25 Score=34.37 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.8
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+++|.| +++-.+||||||..
T Consensus 152 ip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHH
Confidence 556778887 46677999999964
No 245
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=40.91 E-value=8.8 Score=40.21 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.0
Q ss_pred CCEEEEcccccCCCcceee
Q psy9852 32 SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm 50 (241)
-|...+..|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 3778899999999999998
No 246
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=40.77 E-value=18 Score=34.37 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.4
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...++..|+||||||.++.
T Consensus 44 ~~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 44 FTHVLVIGPTGSGKTTSFV 62 (469)
T ss_pred ceEEEEEeCCCCCccceee
Confidence 3678999999999999884
No 247
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=40.59 E-value=11 Score=29.57 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.1
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..|+-+|+.||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56677899999999999864
No 248
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.57 E-value=20 Score=32.96 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHhcCC-CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGS-DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~-n~ti~aYGqtgSGKTyTm 50 (241)
.+...+-.|. .-.++-||+.|+|||+..
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444554 346888999999999765
No 249
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=40.49 E-value=19 Score=35.68 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3556788988 456779999999763
No 250
>PHA01747 putative ATP-dependent protease
Probab=40.33 E-value=17 Score=34.71 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 17 CTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 17 y~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+=.-+-|+|++-..+-|..++=.|+-|+||||+..
T Consensus 174 ~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 174 TLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred HHHhhhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 33346688886667888999999999999999863
No 251
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=40.29 E-value=22 Score=32.12 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..+.+.+-+|-+ ++.=.+||+|||.+..
T Consensus 17 m~~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 17 MEELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4445555556755 4556799999998775
No 252
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=40.29 E-value=22 Score=32.12 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..+.+.+-+|-+ ++.=.+||+|||.+..
T Consensus 17 m~~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 17 MEELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4445555556755 4556799999998775
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=40.27 E-value=24 Score=29.74 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=20.7
Q ss_pred HHHHHHhc-CCC--EEEEcccccCCCcceeec
Q psy9852 23 DVIQAVIS-GSD--GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~-G~n--~ti~aYGqtgSGKTyTm~ 51 (241)
+-++.++. |+. ..+..+|++|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 44566675 443 457889999999997753
No 254
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=40.25 E-value=12 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=14.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999765
No 255
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=40.05 E-value=24 Score=35.85 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.0
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.+-||+.-|++|||||.++
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999886
No 256
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.96 E-value=10 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 356667999999999985
No 257
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=39.86 E-value=11 Score=37.08 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999644
No 258
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=39.71 E-value=19 Score=31.64 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=26.8
Q ss_pred EcccccCCCcceeeccC------CC--CCCCCCchHHHHHHHHHHHHhc
Q psy9852 37 FCFGHARLGKSYTMVGS------PQ--SSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 37 ~aYGqtgSGKTyTm~G~------~~--~~~~~GIipr~~~~LF~~i~~~ 77 (241)
..+|++|+|||.|+-.- .- -...+++=...+..||.-+...
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 46999999999997632 21 0124566677777788766654
No 259
>KOG2373|consensus
Probab=39.63 E-value=30 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=20.6
Q ss_pred HHHHHHhcCCC---EEEEcccccCCCcceeecc
Q psy9852 23 DVIQAVISGSD---GCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 23 plV~~vl~G~n---~ti~aYGqtgSGKTyTm~G 52 (241)
|.++..+.|.- -||++ |+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEehH
Confidence 55666676654 45554 9999999987743
No 260
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=39.62 E-value=13 Score=27.63 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=12.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 567899999999876
No 261
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.43 E-value=24 Score=32.83 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCC-CEEEEcccccCCCcceee
Q psy9852 11 EPQSEICTSALSDVIQAVISGS-DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~G~-n~ti~aYGqtgSGKTyTm 50 (241)
..|+.+-+ .+...+..|. .-.++-+|+.|+|||...
T Consensus 19 iGq~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 19 IGQKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred cChHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 45544443 3333344443 345789999999999855
No 262
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=39.38 E-value=22 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.8
Q ss_pred HHHhcCCCEEEEcccccCCCcceee
Q psy9852 26 QAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 26 ~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.+.+|.+..++.-.+||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4557777767788899999999874
No 263
>KOG1803|consensus
Probab=39.25 E-value=12 Score=37.55 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=14.0
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
-..--|+.|+|||+|+.
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34567999999999984
No 264
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=38.82 E-value=67 Score=30.32 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=35.7
Q ss_pred HHHHHhcCCC---EEEEcccccCCCcc---------------eeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 24 VIQAVISGSD---GCLFCFGHARLGKS---------------YTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 24 lV~~vl~G~n---~ti~aYGqtgSGKT---------------yTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
.+.++-+|.. -.++-.|+.|+||| |++.|++--+...+++|.-+...|..
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFED 143 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHHH
Confidence 4455556655 44777899999996 78888886444578888888766653
No 265
>PRK08233 hypothetical protein; Provisional
Probab=38.76 E-value=12 Score=30.16 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=11.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|..-|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999754
No 266
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=38.75 E-value=22 Score=30.19 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 24 VIQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
-++.++. |+ ...++.+|++|+|||...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3455553 54 467888999999998865
No 267
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.71 E-value=13 Score=30.27 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999865
No 268
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=38.69 E-value=90 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHHHHh--cCCCEEEEcccccCCCcc
Q psy9852 10 DEPQSEICTSALSDVIQAVI--SGSDGCLFCFGHARLGKS 47 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl--~G~n~ti~aYGqtgSGKT 47 (241)
.-.++++=+.++..+...+. ..-...++-.|++|+|||
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 34556666666666544433 233445666699999998
No 269
>PHA02624 large T antigen; Provisional
Probab=38.64 E-value=26 Score=35.50 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHhcCCCE--EEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDG--CLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~--ti~aYGqtgSGKTyTm 50 (241)
.++.++.|... |++-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 35556666554 8999999999999755
No 270
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=38.61 E-value=23 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEc
Q psy9852 12 PQSEICTSALSDVIQAVISGSDGCLFC 38 (241)
Q Consensus 12 ~Qe~Vy~~~v~plV~~vl~G~n~ti~a 38 (241)
..++-|-..|...|-.||+||+.++..
T Consensus 53 ~~d~~fp~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 53 DEDDRFPVCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred cccccccHHHHHHHHHHhccCCceeee
Confidence 346678888999999999999999864
No 271
>KOG0739|consensus
Probab=38.19 E-value=13 Score=34.77 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=38.7
Q ss_pred HHHHHHHHH-HHHHhcCCC---EEEEcccccCCCcceeecc-----------CCCC---CCCCCchHHHHHHHHHHHHhc
Q psy9852 16 ICTSALSDV-IQAVISGSD---GCLFCFGHARLGKSYTMVG-----------SPQS---SATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 16 Vy~~~v~pl-V~~vl~G~n---~ti~aYGqtgSGKTyTm~G-----------~~~~---~~~~GIipr~~~~LF~~i~~~ 77 (241)
+=++.+.|+ ...++.|.- ..|+.||+.|+||+|---- -..+ ..=-|=--+.+..||+...+.
T Consensus 145 LKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 145 LKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAREN 224 (439)
T ss_pred HHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 334444554 245677765 5699999999999984321 1100 001233456788999988776
Q ss_pred cc
Q psy9852 78 KH 79 (241)
Q Consensus 78 ~~ 79 (241)
+.
T Consensus 225 kP 226 (439)
T KOG0739|consen 225 KP 226 (439)
T ss_pred CC
Confidence 54
No 272
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=38.07 E-value=26 Score=35.15 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=15.4
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.....+..|+||||||....
T Consensus 255 ~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred CCccEEEECCCCCcHHHHHH
Confidence 33457889999999998653
No 273
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=38.01 E-value=19 Score=34.13 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.1
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
-.|+.-+|++.|++|+|||.-+
T Consensus 19 k~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred hcCCceEEEEecCCCCchhHHH
Confidence 3599999999999999998743
No 274
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=37.93 E-value=42 Score=28.78 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=13.4
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...+---|++|||||+.+
T Consensus 33 ~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334555599999999866
No 275
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=37.88 E-value=15 Score=28.47 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999754
No 276
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.74 E-value=20 Score=36.32 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++.+|++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999874
No 277
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=37.72 E-value=14 Score=35.35 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.1
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|+-+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999765
No 278
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=37.62 E-value=16 Score=33.88 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..++..++.+. ..++.-|.+|||||..+.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 445666666643 678888999999998774
No 279
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=37.61 E-value=11 Score=35.74 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=15.2
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
+-.++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 456889999999999876
No 280
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=37.58 E-value=21 Score=35.51 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcccccCCCc
Q psy9852 28 VISGSDGCLFCFGHARLGK 46 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGK 46 (241)
-..+.+++|+.+|.||+||
T Consensus 263 r~A~tdstVLi~GESGTGK 281 (560)
T COG3829 263 RIAKTDSTVLILGESGTGK 281 (560)
T ss_pred hhcCCCCcEEEecCCCccH
Confidence 3568999999999999999
No 281
>KOG0729|consensus
Probab=37.50 E-value=15 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCC--EEEEcccccCCCcceeec--------------cCCCCCCCCCchHHHHHHHHHHHHhc
Q psy9852 31 GSD--GCLFCFGHARLGKSYTMV--------------GSPQSSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 31 G~n--~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GIipr~~~~LF~~i~~~ 77 (241)
|.+ --|+.||+.|+|||..-- |+.---...|==-|.+.+||+.....
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 555 348999999999986532 22100001233367888999886654
No 282
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=37.43 E-value=18 Score=36.59 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
...+..|+-.|++|+||++.-
T Consensus 396 a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 396 AQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred hCCCCCEEEECCCCcCHHHHH
Confidence 356778999999999998754
No 283
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=37.36 E-value=14 Score=29.61 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|...|+.|||||+...
T Consensus 2 iI~i~G~~GSGKstia~ 18 (171)
T TIGR02173 2 IITISGPPGSGKTTVAK 18 (171)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36778999999997654
No 284
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=37.27 E-value=24 Score=28.91 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHhc-CCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVIS-GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~-G~n~ti~aYGqtgSGKTyTm 50 (241)
.++..+.. .....|+..|..|||||.-+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 34555554 66788999999999999655
No 285
>PRK14531 adenylate kinase; Provisional
Probab=37.17 E-value=14 Score=30.63 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
-|+..|+.|||||...
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999998764
No 286
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=37.10 E-value=11 Score=31.42 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=11.8
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
..-|++|||||+.+
T Consensus 3 gi~G~~GsGKSTl~ 16 (198)
T cd02023 3 GIAGGSGSGKTTVA 16 (198)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999887
No 287
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.00 E-value=16 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=18.2
Q ss_pred HHHHhc-C--CCEEEEcccccCCCcceee
Q psy9852 25 IQAVIS-G--SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~-G--~n~ti~aYGqtgSGKTyTm 50 (241)
++.++. | .+..++..|++|||||.-.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 445553 3 3567889999999998543
No 288
>PRK04040 adenylate kinase; Provisional
Probab=36.90 E-value=14 Score=31.19 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+.+|..|||||+.+
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999866
No 289
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=36.78 E-value=27 Score=31.41 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=20.5
Q ss_pred HHHHHHhcCC---CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGS---DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~---n~ti~aYGqtgSGKTyTm 50 (241)
+-++.++.|- ...+..||++|||||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4566777643 456788999999999754
No 290
>PRK10865 protein disaggregation chaperone; Provisional
Probab=36.74 E-value=28 Score=36.38 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
+.++-.|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56778899999999976
No 291
>PRK14532 adenylate kinase; Provisional
Probab=36.70 E-value=16 Score=30.15 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||..-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999998754
No 292
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=36.61 E-value=9.4 Score=33.02 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=10.7
Q ss_pred ccccCCCcceee
Q psy9852 39 FGHARLGKSYTM 50 (241)
Q Consensus 39 YGqtgSGKTyTm 50 (241)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 399999999987
No 293
>KOG0330|consensus
Probab=36.60 E-value=21 Score=34.28 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|..+++|-++. +..+||||||-+.
T Consensus 91 aiP~~L~g~dvI--glAeTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVI--GLAETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEE--EEeccCCCchhhh
Confidence 355678898874 4459999999765
No 294
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=36.60 E-value=11 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
-|...|.+|+|||..+.
T Consensus 3 ki~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998763
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.30 E-value=13 Score=35.67 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
-.++-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346677999999999985
No 296
>PTZ00014 myosin-A; Provisional
Probab=35.94 E-value=33 Score=35.84 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.6
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.|.||+.-|.+|+|||-+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999553
No 297
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=35.85 E-value=29 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHHHHHhcCC-CEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGS-DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~-n~ti~aYGqtgSGKTyTm 50 (241)
-..|+.+.+ .+...+-.|. .-.++-||+.|+|||.+.
T Consensus 16 iig~~~~~~----~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 16 VIGQEHIVQ----TLKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred ccCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 345555544 2333334454 346789999999999765
No 298
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=35.84 E-value=18 Score=29.39 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|++|||||.-+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999843
No 299
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=35.63 E-value=20 Score=35.06 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.1
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..|+-+|++||||++..
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CcCCCEEEECCCCccHHHHH
Confidence 56778999999999998764
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=35.60 E-value=37 Score=35.12 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.3
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
+.++-+|++|+|||+..
T Consensus 489 ~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999877
No 301
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=35.59 E-value=29 Score=35.66 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.|..+.| +||||||...
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 355678999965554 8999999864
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.51 E-value=13 Score=33.38 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=14.0
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
.++...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 345555999999999874
No 303
>PRK13767 ATP-dependent helicase; Provisional
Probab=35.49 E-value=29 Score=36.32 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.+++|.|+.| -.+||||||...
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 344577887655 459999999864
No 304
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=35.31 E-value=23 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCE------EEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDG------CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~------ti~aYGqtgSGKTyTm~ 51 (241)
..=++.++++.+. .+.-.|++|||||+.|-
T Consensus 15 e~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 15 QTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3334456666443 35677999999999886
No 305
>PRK06762 hypothetical protein; Provisional
Probab=35.19 E-value=17 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.5
Q ss_pred EEEcccccCCCcce
Q psy9852 35 CLFCFGHARLGKSY 48 (241)
Q Consensus 35 ti~aYGqtgSGKTy 48 (241)
.|...|..|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 45667999999987
No 306
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.12 E-value=21 Score=35.44 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.0
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...+..|+-+|++|+||++..
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHH
Confidence 3466889999999999997654
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.91 E-value=35 Score=33.02 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++..|++|+|||.++.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999999874
No 308
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=34.88 E-value=12 Score=32.88 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=12.7
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||.-|.
T Consensus 34 vaI~GpSGSGKSTLLn 49 (226)
T COG1136 34 VAIVGPSGSGKSTLLN 49 (226)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3556999999998764
No 309
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=34.75 E-value=38 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.5
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+-+|.-|+|||+-+.
T Consensus 16 ~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568889999999998873
No 310
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.56 E-value=13 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.1
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+...|++|+|||.|+.
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456777999999999994
No 311
>KOG0652|consensus
Probab=34.52 E-value=17 Score=33.38 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=13.9
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
-++.||+.|+|||..--
T Consensus 207 GvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMAR 223 (424)
T ss_pred ceEeeCCCCCcHHHHHH
Confidence 48999999999986543
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=34.32 E-value=16 Score=30.52 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|.-.|++|||||+..
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999865
No 313
>PRK03839 putative kinase; Provisional
Probab=34.30 E-value=16 Score=29.90 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.8
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 66779999999864
No 314
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.21 E-value=21 Score=35.28 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.0
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...+..|+-+|++|+||+...
T Consensus 231 ~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 231 YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred HhCCCCcEEEECCCCcCHHHHH
Confidence 3466789999999999997654
No 315
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.10 E-value=29 Score=33.76 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCC-EEEEcccccCCCcceeec
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSD-GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n-~ti~aYGqtgSGKTyTm~ 51 (241)
-..|+.+ +..+...+..|.- ..++-||+.|+|||.+..
T Consensus 16 ivGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 16 VVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred ccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3455554 2233333344443 347889999999998763
No 316
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=33.94 E-value=14 Score=37.58 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.4
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
|...+..|.||+|||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677889999999999988
No 317
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=33.81 E-value=17 Score=34.77 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=15.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+-+|++|+|||...
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999876
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.60 E-value=14 Score=35.56 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.3
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|.-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 457778999999999984
No 319
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=33.43 E-value=38 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.5
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
++++-+|++|+|||+..
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46788899999999766
No 320
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.34 E-value=22 Score=34.85 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
...+..|+-+|.+||||++..
T Consensus 224 A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 224 AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred hCCCCCEEEECCCCccHHHHH
Confidence 345777999999999998765
No 321
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.13 E-value=15 Score=31.42 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=12.7
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|+|||.+|-
T Consensus 28 ~~ivGpNGaGKSTll~ 43 (212)
T cd03274 28 SAIVGPNGSGKSNVID 43 (212)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3355999999999873
No 322
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=33.02 E-value=18 Score=36.90 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=27.6
Q ss_pred EEEEcccccCCCcceeeccCCC--------------CCCCCCchHHHHHHHHHHHHhc
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQ--------------SSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~--------------~~~~~GIipr~~~~LF~~i~~~ 77 (241)
..|+-||+.|||||+...--.. -....|=-...+..+|+.....
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~ 545 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQA 545 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc
Confidence 3478899999999975431110 0012344566788888877654
No 323
>PRK00300 gmk guanylate kinase; Provisional
Probab=32.97 E-value=21 Score=29.69 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=12.7
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
..|...|++|||||..
T Consensus 6 ~~i~i~G~sGsGKstl 21 (205)
T PRK00300 6 LLIVLSGPSGAGKSTL 21 (205)
T ss_pred CEEEEECCCCCCHHHH
Confidence 3566779999999964
No 324
>KOG0745|consensus
Probab=32.76 E-value=18 Score=35.32 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.5
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
..|+..|+||||||+-
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 4578899999999864
No 325
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.64 E-value=20 Score=31.67 Aligned_cols=17 Identities=18% Similarity=0.299 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|.+.|++|||||.-+.
T Consensus 33 ~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 33 LVVVLGPSGCGKTTLLN 49 (259)
T ss_pred EEEEEcCCCccHHHHHH
Confidence 46788999999997553
No 326
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=32.60 E-value=45 Score=34.37 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999765
No 327
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=32.52 E-value=20 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.2
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|...|++|||||.-+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999633
No 328
>PRK01172 ski2-like helicase; Provisional
Probab=32.46 E-value=30 Score=34.86 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
++.+.+|.| ++.-++||||||..
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHH
Confidence 344567776 56667999999975
No 329
>KOG1532|consensus
Probab=32.39 E-value=27 Score=32.23 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=16.2
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
-+||++.|-.|||||.-|
T Consensus 19 p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CcEEEEEecCCCCchhHH
Confidence 478999999999999877
No 330
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=32.37 E-value=39 Score=37.05 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=16.2
Q ss_pred HHhcCCCEEEEcccccCCCcceee
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..+++.. .++..|+||||||.-+
T Consensus 84 ~ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 84 EAIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHhCC-eEEEECCCCCCHHHHH
Confidence 3344444 4667799999999854
No 331
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=32.32 E-value=16 Score=31.08 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.5
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
++.-+|++|+|||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 67788999999998774
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=32.30 E-value=22 Score=31.39 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred CEEEEcccccCCCcce
Q psy9852 33 DGCLFCFGHARLGKSY 48 (241)
Q Consensus 33 n~ti~aYGqtgSGKTy 48 (241)
..+++.+|++|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4668889999999986
No 333
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=32.30 E-value=35 Score=37.01 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..|..+++|.++.++ -+||+|||.+-
T Consensus 467 eaI~aiL~GrDVLVi--mPTGSGKSLcY 492 (1195)
T PLN03137 467 EIINATMSGYDVFVL--MPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHcCCCEEEE--cCCCccHHHHH
Confidence 456778999996555 49999999874
No 334
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=32.25 E-value=20 Score=32.92 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|+||||||---
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 4777899999999643
No 335
>PRK10867 signal recognition particle protein; Provisional
Probab=32.20 E-value=50 Score=31.87 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+..|++|+|||.|..
T Consensus 101 ~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 457777999999998764
No 336
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.13 E-value=22 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred HhcCCCEE------EEcccccCCCcceee
Q psy9852 28 VISGSDGC------LFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~t------i~aYGqtgSGKTyTm 50 (241)
++.|.|.+ +.-.|++|||||.-+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45555544 345699999999755
No 337
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=31.92 E-value=17 Score=29.18 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 566799999998743
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=31.86 E-value=32 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHHhcC---CCEEEEcccccCCCccee
Q psy9852 23 DVIQAVISG---SDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 23 plV~~vl~G---~n~ti~aYGqtgSGKTyT 49 (241)
|-++.++.| .+.+++..|++|||||.-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 345666664 467889999999999843
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.84 E-value=34 Score=29.01 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 25 IQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
++.++. |+ ...++-+|.+|+|||.-.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455554 43 456777899999998654
No 340
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.79 E-value=17 Score=37.70 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.1
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+.-.|++|+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456777999999999985
No 341
>PRK14527 adenylate kinase; Provisional
Probab=31.65 E-value=21 Score=29.66 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.0
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|+.|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999998754
No 342
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=31.49 E-value=22 Score=36.76 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.1
Q ss_pred CEEEEcccccCCCcceeecc
Q psy9852 33 DGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~G 52 (241)
...++-+|++|+|||+...+
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 33456699999999999876
No 343
>PTZ00110 helicase; Provisional
Probab=31.42 E-value=31 Score=33.95 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.5
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..++.|.+. ++..+||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4567889876 55679999999764
No 344
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=31.34 E-value=42 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHHHhcC-C--CEEEEcccccCCCcceee
Q psy9852 22 SDVIQAVISG-S--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 22 ~plV~~vl~G-~--n~ti~aYGqtgSGKTyTm 50 (241)
.+-++.++.| + ...+..||+.|||||.-+
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 4557777775 3 345678999999999754
No 345
>KOG0922|consensus
Probab=31.29 E-value=44 Score=33.96 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.1
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
|..++.-|.||||||.-+-
T Consensus 66 nqvlIviGeTGsGKSTQip 84 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIP 84 (674)
T ss_pred CCEEEEEcCCCCCccccHh
Confidence 5566778999999997663
No 346
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=31.10 E-value=34 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=20.9
Q ss_pred HHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISG---SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G---~n~ti~aYGqtgSGKTyTm 50 (241)
|-++.++.| ....++.+|.+|+|||.-.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 445667764 4577899999999998644
No 347
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=31.10 E-value=23 Score=29.29 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.8
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999765
No 348
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=31.05 E-value=19 Score=30.30 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=12.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|.-.|++|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556699999999654
No 349
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=30.94 E-value=16 Score=29.79 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=11.2
Q ss_pred ccccCCCcceeec
Q psy9852 39 FGHARLGKSYTMV 51 (241)
Q Consensus 39 YGqtgSGKTyTm~ 51 (241)
.|.+|||||+.+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4899999998875
No 350
>PRK14530 adenylate kinase; Provisional
Probab=30.66 E-value=20 Score=30.42 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|++|||||.-.
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998654
No 351
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=30.56 E-value=37 Score=32.96 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeeccCCCC-CCCCCchHHHHHHHHHHHHh
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS-SATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~-~~~~GIipr~~~~LF~~i~~ 76 (241)
.++.-+-.++| ++-.|++|+||||...+-... ....| -+.++..||..+..
T Consensus 201 rl~~fve~~~N--li~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 201 RLLPLVEPNYN--LIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred hhHHHHhcCCc--EEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 33344445666 466799999999887652211 11235 33445556665554
No 352
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=29 Score=33.41 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCEEEEcccccCCCcceeec--cC------------CCCCCCCCchHHHHHHHHHHHHhcc
Q psy9852 31 GSDGCLFCFGHARLGKSYTMV--GS------------PQSSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~--G~------------~~~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
.....++-||+.|+|||+.-- +. .--+...|-.-..+..+|.......
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~ 335 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLA 335 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCC
Confidence 344579999999999998653 11 0012245667788889998877543
No 353
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.46 E-value=28 Score=37.12 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.|..++.+.+.+ +..|..|+||||+|-
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 456677776654 478999999999864
No 354
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=30.40 E-value=20 Score=31.73 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
-....|+..|.+|+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45567889999999999986
No 355
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=30.27 E-value=18 Score=30.66 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.5
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+.-.|++|||||..|-
T Consensus 30 ~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 30 LFLICGPTGAGKSTILD 46 (213)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45577999999997764
No 356
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=30.22 E-value=21 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred EEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 36 LFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
|+..|..|||||.-..=-. ...|+..-.+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La---~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIA---EKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHH---HHcCCCeeehhHHHHH
Confidence 6778999999986432111 1246666666666654
No 357
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=30.08 E-value=22 Score=29.90 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=11.5
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999754
No 358
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=29.92 E-value=42 Score=30.47 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHhcC-C--CEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISG-S--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G-~--n~ti~aYGqtgSGKTyTm~ 51 (241)
+-++.++.| + ...+..+|++|||||..+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 445666664 2 4567789999999997543
No 359
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=29.80 E-value=25 Score=29.84 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=12.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-+|+-.|+.|||||.-+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 36788899999999644
No 360
>KOG0340|consensus
Probab=29.75 E-value=32 Score=32.76 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeeccC
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~ 53 (241)
.+|..+++|.+| +....||||||.-+-.+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 457788999997 55668999999988765
No 361
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.67 E-value=25 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.0
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+..+|++|||||.-+.
T Consensus 32 ~~~i~G~nGsGKSTL~~ 48 (235)
T COG1122 32 RVLLIGPNGSGKSTLLK 48 (235)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56788999999997663
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=29.66 E-value=24 Score=30.66 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++.+|++|+|||...
T Consensus 25 ~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 25 SLILIEGDESTGKSILS 41 (230)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47888999999999884
No 363
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=29.55 E-value=42 Score=31.08 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHHHhc--CCC--EEEEcccccCCCcceee
Q psy9852 20 ALSDVIQAVIS--GSD--GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 20 ~v~plV~~vl~--G~n--~ti~aYGqtgSGKTyTm 50 (241)
+..|-++.++. |+. ..+..||++|||||.-.
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 45567788875 664 46789999999999764
No 364
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=29.53 E-value=25 Score=24.39 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=10.9
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
.--|..|||||..+
T Consensus 3 ~i~G~~gsGKst~~ 16 (69)
T cd02019 3 AITGGSGSGKSTVA 16 (69)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999998765
No 365
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=29.46 E-value=44 Score=31.03 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc--CCC--EEEEcccccCCCcceeec
Q psy9852 20 ALSDVIQAVIS--GSD--GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 20 ~v~plV~~vl~--G~n--~ti~aYGqtgSGKTyTm~ 51 (241)
+..+-++.++. |+. ..+..||++|||||.-..
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal 73 (325)
T cd00983 38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLAL 73 (325)
T ss_pred CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 45677788887 543 467899999999996543
No 366
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=29.46 E-value=37 Score=35.47 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
...+++.+- . |..++..|+||||||..+.
T Consensus 7 ~~~i~~~l~-~-~~~vIi~a~TGSGKTT~vp 35 (819)
T TIGR01970 7 LPALRDALA-A-HPQVVLEAPPGAGKSTAVP 35 (819)
T ss_pred HHHHHHHHH-c-CCcEEEECCCCCCHHHHHH
Confidence 344444443 2 3457788999999998653
No 367
>PRK06851 hypothetical protein; Provisional
Probab=29.42 E-value=26 Score=33.03 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.++++++.+-.++.-|..|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 344556777777888999999999988
No 368
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=29.31 E-value=26 Score=29.55 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=12.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
..+-+|++|||||--+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4567899999998544
No 369
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=29.31 E-value=17 Score=34.22 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++..|.+|||||..|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999766
No 370
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=29.27 E-value=23 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+-.
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999998763
No 371
>PTZ00301 uridine kinase; Provisional
Probab=29.07 E-value=18 Score=31.17 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=10.5
Q ss_pred cccccCCCcceee
Q psy9852 38 CFGHARLGKSYTM 50 (241)
Q Consensus 38 aYGqtgSGKTyTm 50 (241)
--|.+|||||+..
T Consensus 8 IaG~SgSGKTTla 20 (210)
T PTZ00301 8 ISGASGSGKSSLS 20 (210)
T ss_pred EECCCcCCHHHHH
Confidence 3499999999854
No 372
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.92 E-value=30 Score=32.19 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.0
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
+..|+..|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 445889999999999765
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=28.91 E-value=27 Score=26.80 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=12.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|||||.-+
T Consensus 13 ~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEccCCCccccce
Confidence 3456799999999765
No 374
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.89 E-value=20 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=11.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 345577799999877
No 375
>KOG0741|consensus
Probab=28.78 E-value=26 Score=35.13 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
-|+.||+.|+|||-.
T Consensus 258 GiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLI 272 (744)
T ss_pred eEEEECCCCCChhHH
Confidence 389999999999974
No 376
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=28.74 E-value=25 Score=32.03 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++.-++||||||...
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 466789999999763
No 377
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.59 E-value=38 Score=33.28 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCC-EEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSD-GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n-~ti~aYGqtgSGKTyTm 50 (241)
-..|+.+.+ .+...+. .+.- -.++-||+.|+|||.+.
T Consensus 16 vvGq~~v~~-~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 16 VVGQEHVKE-VLLAALR---QGRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred hcChHHHHH-HHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 456666644 2333333 3332 34589999999999665
No 378
>KOG1970|consensus
Probab=28.54 E-value=25 Score=35.22 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
++.-||+|||||.|+.
T Consensus 113 LLltGPsGcGKSTtvk 128 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVK 128 (634)
T ss_pred EEEeCCCCCCchhHHH
Confidence 4556999999999975
No 379
>KOG0926|consensus
Probab=28.53 E-value=29 Score=36.41 Aligned_cols=23 Identities=4% Similarity=-0.158 Sum_probs=16.0
Q ss_pred CcEEEeCCCHHHHHHHHHHhcCC
Q psy9852 126 EDEEMPCPVPPPLHSNLLTLSRD 148 (241)
Q Consensus 126 glt~v~V~s~~d~~~ll~g~~~R 148 (241)
|.--+.|.-.+++.+|.+...+|
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhh
Confidence 55566777777777777765555
No 380
>PRK02496 adk adenylate kinase; Provisional
Probab=28.48 E-value=23 Score=29.01 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 381
>PRK13531 regulatory ATPase RavA; Provisional
Probab=28.37 E-value=42 Score=33.04 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.-++..++.|-+ |+-+|++|+|||+..
T Consensus 29 I~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 3344444554544 688999999999865
No 382
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=28.33 E-value=26 Score=26.24 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999766
No 383
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=28.33 E-value=22 Score=35.59 Aligned_cols=20 Identities=20% Similarity=0.281 Sum_probs=16.2
Q ss_pred CEEEEcccccCCCcceeecc
Q psy9852 33 DGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~G 52 (241)
...++..|..|||||.||.-
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34577889999999999863
No 384
>CHL00095 clpC Clp protease ATP binding subunit
Probab=28.31 E-value=30 Score=35.93 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCEEEEcccccCCCcceeeccC
Q psy9852 32 SDGCLFCFGHARLGKSYTMVGS 53 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~G~ 53 (241)
.-..++-+|++|+|||....|-
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHH
Confidence 3346789999999999988653
No 385
>KOG0335|consensus
Probab=28.25 E-value=25 Score=34.46 Aligned_cols=105 Identities=7% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHhcCCCEEEEcccccCCCcceeeccCC---------CC-C-----CCCCch-----HHHHHHHHHHHHhcccCCCcEEE
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTMVGSP---------QS-S-----ATLGVI-----PSAISWLFRCISEQKHKTGARFS 86 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm~G~~---------~~-~-----~~~GIi-----pr~~~~LF~~i~~~~~~~~~~~~ 86 (241)
.+.+|.+ ++|.+|||||||+-...+- .+ + ..|+.+ --.+.+||++..+. .+.
T Consensus 107 ~i~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~------~~~ 178 (482)
T KOG0335|consen 107 IISGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF------SYL 178 (482)
T ss_pred eeecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh------ccc
Confidence 3455555 4888999999999877652 00 0 012221 12356778776654 556
Q ss_pred EEEEEEEEeCCCCeEEEcCCCCCCC-ceEEEcc--------CCcEEecCcEEEeCCCHHHHHH
Q psy9852 87 VRASAIEISSSSQHVKDLLSTYSNG-KFFRLCF--------LKRFHAEEDEEMPCPVPPPLHS 140 (241)
Q Consensus 87 V~vS~lEIY~~nE~v~DLL~~~~~~-~~l~~~~--------~~g~~v~glt~v~V~s~~d~~~ 140 (241)
-.|-...+|+ +..+.+.+..-..+ ..+.-++ .+.+.++++..+.+.-++-+..
T Consensus 179 s~~~~~~~yg-g~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD 240 (482)
T KOG0335|consen 179 SGMKSVVVYG-GTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLD 240 (482)
T ss_pred ccceeeeeeC-CcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhh
Confidence 6777888996 54444443222222 2222233 3455667777555554444444
No 386
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=28.19 E-value=24 Score=34.22 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+.+|++|+|||+..-
T Consensus 48 ~~ILLiGppG~GKT~lAr 65 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIAR 65 (441)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999987543
No 387
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.11 E-value=19 Score=33.06 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
+|+..|.|+||||..|.
T Consensus 145 siii~G~t~sGKTt~ln 161 (312)
T COG0630 145 SIIICGGTASGKTTLLN 161 (312)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 46778999999999984
No 388
>PRK05480 uridine/cytidine kinase; Provisional
Probab=28.06 E-value=24 Score=29.67 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|.--|.+|||||+..
T Consensus 8 iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 8 IIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999765
No 389
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.02 E-value=29 Score=30.32 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHhcC---CCEEEEcccccCCCccee
Q psy9852 25 IQAVISG---SDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G---~n~ti~aYGqtgSGKTyT 49 (241)
++.++.| ....++.+|..|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4455553 346788999999999853
No 390
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=28.00 E-value=20 Score=37.37 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.7
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
|...+..|.+|||||++|.
T Consensus 449 N~N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cccEEEEcCCCCCHHHHHH
Confidence 4457888999999999883
No 391
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=27.91 E-value=44 Score=35.38 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 20 ALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 20 ~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.++....-.+....++..|+||||||-..
T Consensus 459 aI~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 459 AIEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 3444444444444445688899999999654
No 392
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=27.91 E-value=33 Score=33.07 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCccee
Q psy9852 11 EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
..|+.+.-. ..|+=.-+-.|.=.+.+-||+.|+|||.-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 456555532 34544445557777888999999999964
No 393
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=27.80 E-value=21 Score=33.54 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=27.0
Q ss_pred EEEEcccccCCCcceeeccCCCC----CCCCCchHHHHHHHHHHHHhcc
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQS----SATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~~----~~~~GIipr~~~~LF~~i~~~~ 78 (241)
--|..||.-|+|||+-|----.. ...+-=....+.++++.+....
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh
Confidence 45899999999999988421110 0001113466777777766643
No 394
>PRK09354 recA recombinase A; Provisional
Probab=27.78 E-value=49 Score=31.07 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc--CC--CEEEEcccccCCCcceeec
Q psy9852 20 ALSDVIQAVIS--GS--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 20 ~v~plV~~vl~--G~--n~ti~aYGqtgSGKTyTm~ 51 (241)
+..|-++.++. |+ ...+..||++|||||.-..
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 45677788887 43 3567899999999997543
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.78 E-value=67 Score=31.01 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.3
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+..|.+|+|||.|..
T Consensus 101 ~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467778999999999885
No 396
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=27.76 E-value=47 Score=31.03 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISG---SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G---~n~ti~aYGqtgSGKTyTm 50 (241)
..+-++.++.| ......-||+.|||||.-+
T Consensus 111 G~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 111 GSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 44567777774 2345678999999999743
No 397
>KOG0730|consensus
Probab=27.62 E-value=26 Score=35.59 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred EEEEcccccCCCcceeeccCCCC--------------CCCCCchHHHHHHHHHHHHhcc
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQS--------------SATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~~--------------~~~~GIipr~~~~LF~~i~~~~ 78 (241)
--|+.||+.|||||....--... ..--|=--+++.++|+......
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA 527 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC
Confidence 34999999999999754311100 0012334578888998877654
No 398
>KOG2035|consensus
Probab=27.43 E-value=47 Score=30.79 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceee
Q psy9852 16 ICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 16 Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm 50 (241)
.|..-..+.+.++.. |---.++.||++|+||-..+
T Consensus 16 ~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 16 IYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred ccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 344445666666554 43456899999999996554
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=27.41 E-value=22 Score=30.53 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3446699999999887
No 400
>KOG1534|consensus
Probab=27.38 E-value=32 Score=30.62 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=12.4
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
..|..|+.||||+.-
T Consensus 5 a~lV~GpAgSGKSTy 19 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTY 19 (273)
T ss_pred eEEEEccCCCCcchH
Confidence 468899999999753
No 401
>KOG0987|consensus
Probab=27.29 E-value=46 Score=32.93 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
...|..||. .+ +..+.+-....+| ||..|+||||-.
T Consensus 119 ~~eqk~v~d-~~---~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYD-AI---LEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHH-HH---HHHHhccccceee-eccCCccceeeH
Confidence 446777776 32 2344455556677 999999999976
No 402
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=27.12 E-value=25 Score=31.14 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=11.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 456899999999764
No 403
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=27.00 E-value=28 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+...|++|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999854
No 404
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=26.91 E-value=70 Score=33.56 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHhcCCC------EEEEcccccCCCcce
Q psy9852 12 PQSEICTSALSDVIQAVISGSD------GCLFCFGHARLGKSY 48 (241)
Q Consensus 12 ~Qe~Vy~~~v~plV~~vl~G~n------~ti~aYGqtgSGKTy 48 (241)
.|++.-+ .+...|.....|.+ +.++-.|++|+|||+
T Consensus 570 GQ~~Av~-~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 570 GQDHALE-AIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTE 611 (852)
T ss_pred ChHHHHH-HHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHH
No 405
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.91 E-value=21 Score=29.91 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+...|++|||||..+
T Consensus 24 ~~l~G~nG~GKSTLl 38 (176)
T cd03238 24 VVVTGVSGSGKSTLV 38 (176)
T ss_pred EEEECCCCCCHHHHH
Confidence 355699999999877
No 406
>KOG2655|consensus
Probab=26.88 E-value=42 Score=31.74 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=19.9
Q ss_pred HHhcCCCEEEEcccccCCCccee
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+-.|+.-++++-|++|+|||.-
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHH
Confidence 45679999999999999999753
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=26.80 E-value=23 Score=28.71 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++..|++|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999886
No 408
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=26.69 E-value=24 Score=36.48 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
..+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5667899999999988
No 409
>PRK14528 adenylate kinase; Provisional
Probab=26.53 E-value=27 Score=29.15 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|+..|+.|||||....
T Consensus 3 ~i~i~G~pGsGKtt~a~ 19 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAK 19 (186)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36778999999987653
No 410
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=26.51 E-value=29 Score=32.05 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-.|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4677899999999765
No 411
>PRK10865 protein disaggregation chaperone; Provisional
Probab=26.28 E-value=36 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+..+++-+.......++-+|+.|+|||+.+.|
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 44455444444555677889999999998876
No 412
>KOG0348|consensus
Probab=26.24 E-value=43 Score=33.62 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee--------eccCCC-CCCCCCch-------HHHHHHHHHHHHhcccCCCcEEEE
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT--------MVGSPQ-SSATLGVI-------PSAISWLFRCISEQKHKTGARFSV 87 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT--------m~G~~~-~~~~~GIi-------pr~~~~LF~~i~~~~~~~~~~~~V 87 (241)
.|..+++|.++-| --|||||||-. +.+-+. -....|++ -..+.++|+.++..-.. ..|-|
T Consensus 167 ~IP~lL~grD~lV--~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~--~hWIV 242 (708)
T KOG0348|consen 167 AIPVLLEGRDALV--RAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP--FHWIV 242 (708)
T ss_pred chhhhhcCcceEE--EcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC--ceEEe
Confidence 3556788999755 45999999854 333221 01233431 23466888888876543 34444
Q ss_pred EEE
Q psy9852 88 RAS 90 (241)
Q Consensus 88 ~vS 90 (241)
-..
T Consensus 243 Pg~ 245 (708)
T KOG0348|consen 243 PGV 245 (708)
T ss_pred ece
Confidence 433
No 413
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=26.16 E-value=23 Score=37.00 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.0
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
++..+..|+||||||+.+
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 344788899999999988
No 414
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=26.15 E-value=35 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
|..++.+ +..++..|..|+|||++|-.
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 3445554 33456789999999998854
No 415
>PRK00279 adk adenylate kinase; Reviewed
Probab=26.08 E-value=30 Score=29.33 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.3
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+.+|..|||||..
T Consensus 3 I~v~G~pGsGKsT~ 16 (215)
T PRK00279 3 LILLGPPGAGKGTQ 16 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 77899999999964
No 416
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=26.02 E-value=30 Score=28.73 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=11.6
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
++..|.+|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999854
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=25.99 E-value=18 Score=30.50 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.3
Q ss_pred EcccccCCCcceeec
Q psy9852 37 FCFGHARLGKSYTMV 51 (241)
Q Consensus 37 ~aYGqtgSGKTyTm~ 51 (241)
+.-|..|||||+.+.
T Consensus 2 vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIK 16 (234)
T ss_pred EEEcCCCCCHHHHHH
Confidence 456999999999773
No 418
>KOG0328|consensus
Probab=25.90 E-value=49 Score=30.74 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.|..++.|-++ +|-.|+|+|||.|..
T Consensus 57 Ai~~IlkGrdV--iaQaqSGTGKTa~~s 82 (400)
T KOG0328|consen 57 AIPQILKGRDV--IAQAQSGTGKTATFS 82 (400)
T ss_pred hhhhhhcccce--EEEecCCCCceEEEE
Confidence 34556788885 778899999987764
No 419
>PRK05541 adenylylsulfate kinase; Provisional
Probab=25.88 E-value=30 Score=28.16 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-.|.+|||||...
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999998655
No 420
>KOG2228|consensus
Probab=25.83 E-value=91 Score=29.64 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHhcCCCEEEEcccccCCCcceeeccCCCC----------CCCCCchHH---HHHHHHHHHHhcccCCCcEEEEEEEEE
Q psy9852 26 QAVISGSDGCLFCFGHARLGKSYTMVGSPQS----------SATLGVIPS---AISWLFRCISEQKHKTGARFSVRASAI 92 (241)
Q Consensus 26 ~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~----------~~~~GIipr---~~~~LF~~i~~~~~~~~~~~~V~vS~l 92 (241)
..++.|-.-.++-.|+.|||||+-+----.+ ..-.|.+.- ++..|-.+++..... ...+.+||-
T Consensus 42 qt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~---~~k~~gsft 118 (408)
T KOG2228|consen 42 QTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNR---IVKSFGSFT 118 (408)
T ss_pred HHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhh---hheeecccc
Confidence 3467788888999999999999876311000 013455665 777777777665432 455667777
Q ss_pred EEe
Q psy9852 93 EIS 95 (241)
Q Consensus 93 EIY 95 (241)
|..
T Consensus 119 e~l 121 (408)
T KOG2228|consen 119 ENL 121 (408)
T ss_pred hhH
Confidence 743
No 421
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=25.72 E-value=28 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=17.3
Q ss_pred HHHHHHhcCCC---EEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSD---GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n---~ti~aYGqtgSGKTyTm 50 (241)
|-++.++.|.- .-++-+|++|+|||+.+
T Consensus 19 ~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 19 PPLDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp ----EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred CCcceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 33445555542 24677899999999876
No 422
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=25.72 E-value=53 Score=32.34 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHHHHHhcCC-CEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGS-DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~-n~ti~aYGqtgSGKTyTm 50 (241)
-..|+.+.+ .+...+..|. .-.++-+|+.|+|||.+.
T Consensus 23 liGq~~vv~----~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 23 LQGQEVLVK----VLSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred hcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 345544443 2223344444 246888999999999765
No 423
>PHA02774 E1; Provisional
Probab=25.71 E-value=46 Score=33.60 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=18.4
Q ss_pred HHHhcCCC--EEEEcccccCCCcceee
Q psy9852 26 QAVISGSD--GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 26 ~~vl~G~n--~ti~aYGqtgSGKTyTm 50 (241)
..++.|.- .|++-||+.++||||-.
T Consensus 425 k~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 425 KDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 33444433 58999999999999865
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=25.70 E-value=37 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
+..+++-+.......++-+|++|+|||+.+.|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 45555544455545566789999999998875
No 425
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=25.70 E-value=42 Score=31.31 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 18 TSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 18 ~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
...+.+..+.......- +...|.||||||..+
T Consensus 127 r~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL 158 (345)
T PRK11784 127 RRFVIDTLEEAPAQFPL-VVLGGNTGSGKTELL 158 (345)
T ss_pred HHhhHHHHhhhcccCce-EecCCCCcccHHHHH
Confidence 33344444443334443 446789999999888
No 426
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=25.67 E-value=23 Score=28.76 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=0.0
Q ss_pred cccccCCCcceeec
Q psy9852 38 CFGHARLGKSYTMV 51 (241)
Q Consensus 38 aYGqtgSGKTyTm~ 51 (241)
-+|+.|||||.-+.
T Consensus 4 iiG~N~sGKS~il~ 17 (303)
T PF13304_consen 4 IIGPNGSGKSNILE 17 (303)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 47999999999883
No 427
>PRK09401 reverse gyrase; Reviewed
Probab=25.56 E-value=54 Score=35.68 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..++.|.+..+. .+||||||..
T Consensus 88 ~i~~il~g~dv~i~--ApTGsGKT~f 111 (1176)
T PRK09401 88 WAKRLLLGESFAII--APTGVGKTTF 111 (1176)
T ss_pred HHHHHHCCCcEEEE--cCCCCCHHHH
Confidence 45567889887555 5999999953
No 428
>KOG0726|consensus
Probab=25.53 E-value=25 Score=32.82 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=30.3
Q ss_pred EEEcccccCCCcceeec--------------cCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 35 CLFCFGHARLGKSYTMV--------------GSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
-|+.||..|+|||.--- |+.---...|==|+.+++||+..+....
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 47899999999985321 2220001344559999999999887654
No 429
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=25.50 E-value=34 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.1
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|+..|+.|||||....
T Consensus 6 ~I~liG~~GaGKStl~~ 22 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGR 22 (172)
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58889999999987653
No 430
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.46 E-value=19 Score=32.55 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=11.6
Q ss_pred cccccCCCcceeec
Q psy9852 38 CFGHARLGKSYTMV 51 (241)
Q Consensus 38 aYGqtgSGKTyTm~ 51 (241)
-.|++|+|||.+|-
T Consensus 36 llG~NGAGKTTllk 49 (293)
T COG1131 36 LLGPNGAGKTTLLK 49 (293)
T ss_pred EECCCCCCHHHHHH
Confidence 34999999999874
No 431
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=25.30 E-value=35 Score=30.13 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.0
Q ss_pred cccccCCCcceeec
Q psy9852 38 CFGHARLGKSYTMV 51 (241)
Q Consensus 38 aYGqtgSGKTyTm~ 51 (241)
-.|+.|+|||.|.+
T Consensus 35 LLGPNGAGKTT~Fy 48 (243)
T COG1137 35 LLGPNGAGKTTTFY 48 (243)
T ss_pred EECCCCCCceeEEE
Confidence 46999999998876
No 432
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=25.29 E-value=28 Score=28.88 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=25.26 E-value=31 Score=28.14 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.0
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+.-|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998654
No 434
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=25.23 E-value=31 Score=31.65 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.8
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|+||||||.--
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4677899999998644
No 435
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=25.20 E-value=38 Score=32.98 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.1
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...+..|+-+|++|+||++..
T Consensus 206 ~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 206 VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3466888999999999998654
No 436
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=25.12 E-value=76 Score=33.26 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 20 ALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 20 ~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+.-+++.+-+|.+-.+++ =.||+|||+|.+
T Consensus 173 AI~rv~Eaf~~g~~raLlv-MATGTGKTrTAi 203 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLV-MATGTGKTRTAI 203 (875)
T ss_pred HHHHHHHHHhcCCceEEEE-EecCCCcceeHH
Confidence 3778889999999985544 469999999985
No 437
>KOG0742|consensus
Probab=25.11 E-value=32 Score=33.54 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=16.8
Q ss_pred EecCcEEEeCCCHHHHHHHHH
Q psy9852 123 HAEEDEEMPCPVPPPLHSNLL 143 (241)
Q Consensus 123 ~v~glt~v~V~s~~d~~~ll~ 143 (241)
.|..+.+.+.+-.++=.+||.
T Consensus 505 Ride~veFpLPGeEERfkll~ 525 (630)
T KOG0742|consen 505 RIDEVVEFPLPGEEERFKLLN 525 (630)
T ss_pred hhhheeecCCCChHHHHHHHH
Confidence 566777888888888888877
No 438
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=24.97 E-value=39 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.0
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
.-|+..|.+++|||.-+
T Consensus 2 ~ki~v~G~~~~GKSsli 18 (163)
T cd01860 2 FKLVLLGDSSVGKSSLV 18 (163)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999766
No 439
>PRK13947 shikimate kinase; Provisional
Probab=24.90 E-value=32 Score=27.63 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+.-
T Consensus 3 ~I~l~G~~GsGKst~a 18 (171)
T PRK13947 3 NIVLIGFMGTGKTTVG 18 (171)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4778899999998643
No 440
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=24.74 E-value=33 Score=26.61 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.6
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|..+|.+|+|||.-+
T Consensus 3 i~~~G~~~~GKTsl~ 17 (164)
T cd04139 3 VIVVGAGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 441
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=24.73 E-value=53 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=12.6
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|+.+|+.|+|||...
T Consensus 23 h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp --EEEES-CCCTHHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 36899999999999766
No 442
>KOG0743|consensus
Probab=24.72 E-value=29 Score=33.68 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.3
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
+-|||.|+|||.-+
T Consensus 239 LLYGPPGTGKSS~I 252 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFI 252 (457)
T ss_pred eeeCCCCCCHHHHH
Confidence 78999999999755
No 443
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=24.69 E-value=20 Score=32.65 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|---|++|||||.++
T Consensus 64 IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 64 IISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999987
No 444
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=24.68 E-value=40 Score=26.60 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=13.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|...|..|+|||.-+
T Consensus 4 ~kv~vvG~~~~GKTsli 20 (165)
T cd01864 4 FKIILIGDSNVGKTCVV 20 (165)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677799999999765
No 445
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.67 E-value=26 Score=34.94 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=13.9
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|...|++|+|||+++.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 345555999999999983
No 446
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=24.55 E-value=33 Score=26.40 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|+.|+|||.-+
T Consensus 2 i~i~G~~~~GKTsli 16 (160)
T cd00876 2 VVVLGAGGVGKSAIT 16 (160)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999865
No 447
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=24.54 E-value=33 Score=28.48 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=12.5
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.++..|.+|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478899999999854
No 448
>PRK04296 thymidine kinase; Provisional
Probab=24.37 E-value=25 Score=29.52 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-+|+.|+|||..+
T Consensus 4 i~litG~~GsGKTT~~ 19 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL 19 (190)
T ss_pred EEEEECCCCCHHHHHH
Confidence 4677899999999766
No 449
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=24.33 E-value=24 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=12.9
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
|...|.+|+|||..+.
T Consensus 2 i~l~G~~g~GKTtL~~ 17 (170)
T cd01876 2 IAFAGRSNVGKSSLIN 17 (170)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4567999999998773
No 450
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=24.32 E-value=33 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998654
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=24.17 E-value=70 Score=33.43 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.0
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-+|++|+|||+..
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 356778899999999876
No 452
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=24.13 E-value=49 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=17.3
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...+.+ . +++-.|++|.|||..+
T Consensus 29 l~~~l~~-k-~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 29 LKELLKG-K-TSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHTT-S-EEEEECSTTSSHHHHH
T ss_pred HHHHhcC-C-EEEEECCCCCCHHHHH
Confidence 3455666 4 4555699999999877
No 453
>PRK13949 shikimate kinase; Provisional
Probab=24.13 E-value=31 Score=28.36 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|+.|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999654
No 454
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.05 E-value=30 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.1
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
|+..|..|||||+...
T Consensus 2 Ivl~G~pGSGKST~a~ 17 (249)
T TIGR03574 2 IILTGLPGVGKSTFSK 17 (249)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5677999999998763
No 455
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=23.97 E-value=58 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 13 QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 13 Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|.++++.+...+ -+ +..+++-.+||+|||+...
T Consensus 2 Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAYL 34 (636)
T TIGR03117 2 QALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAMI 34 (636)
T ss_pred HHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHHH
Confidence 666665433322 22 3457888899999995443
No 456
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=23.96 E-value=34 Score=30.14 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.0
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+-+|+.+||||..
T Consensus 2 iLLmG~~~SGKTSi 15 (232)
T PF04670_consen 2 ILLMGPRRSGKTSI 15 (232)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEEcCCCCChhhH
Confidence 67889999999973
No 457
>PRK01184 hypothetical protein; Provisional
Probab=23.95 E-value=31 Score=28.18 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=12.4
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999984
No 458
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.82 E-value=55 Score=33.77 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=28.5
Q ss_pred cCCCEEEEcccccCCCcceeeccC---------CC--CCCCCCchHHHHHHHHHHHH
Q psy9852 30 SGSDGCLFCFGHARLGKSYTMVGS---------PQ--SSATLGVIPSAISWLFRCIS 75 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm~G~---------~~--~~~~~GIipr~~~~LF~~i~ 75 (241)
.|++ ..+-+|.||||||=-.+.- .. =.++.++.|++++.+-....
T Consensus 215 ~~~~-~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 215 GGFA-PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred cccc-ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC
Confidence 4444 5667899999999443321 10 02467888888886655544
No 459
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=23.80 E-value=37 Score=36.21 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=11.9
Q ss_pred ccccCCCcceeeccC
Q psy9852 39 FGHARLGKSYTMVGS 53 (241)
Q Consensus 39 YGqtgSGKTyTm~G~ 53 (241)
-=+||+|||||+.+.
T Consensus 65 ~M~TGtGKT~~~~~~ 79 (986)
T PRK15483 65 KMETGTGKTYVYTRL 79 (986)
T ss_pred EeCCCCCHHHHHHHH
Confidence 347999999987664
No 460
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=23.71 E-value=25 Score=31.91 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|...|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47778999999998876
No 461
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=23.71 E-value=26 Score=30.75 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=10.2
Q ss_pred ccccCCCcceee
Q psy9852 39 FGHARLGKSYTM 50 (241)
Q Consensus 39 YGqtgSGKTyTm 50 (241)
.|+.|||||.-+
T Consensus 2 iGpaGSGKTT~~ 13 (238)
T PF03029_consen 2 IGPAGSGKTTFC 13 (238)
T ss_dssp EESTTSSHHHHH
T ss_pred CCCCCCCHHHHH
Confidence 499999998765
No 462
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=23.68 E-value=69 Score=35.22 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.1
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++. |..++..|+||||||.-+
T Consensus 78 ~l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 78 AIAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHh-CceEEEeCCCCCCcHHHH
Confidence 3444 446677899999999865
No 463
>PLN02165 adenylate isopentenyltransferase
Probab=23.52 E-value=37 Score=31.71 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-.|+||||||...
T Consensus 45 iivIiGPTGSGKStLA 60 (334)
T PLN02165 45 VVVIMGATGSGKSRLS 60 (334)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999655
No 464
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=23.47 E-value=44 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.9
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++++|+||||||..+.
T Consensus 176 ~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred ceEEEEecCCCCCceEEE
Confidence 458999999999999885
No 465
>PLN02200 adenylate kinase family protein
Probab=23.43 E-value=36 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=23.4
Q ss_pred EEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
..|+..|..|||||.-..--.. ..|+..-.+.+|++.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~---~~g~~his~gdllR~ 80 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVE---TFGFKHLSAGDLLRR 80 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HhCCeEEEccHHHHH
Confidence 4578899999999876432211 245655555566653
No 466
>PRK13946 shikimate kinase; Provisional
Probab=23.34 E-value=34 Score=28.28 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.2
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|+..|..|||||..-
T Consensus 11 ~~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVG 27 (184)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36888999999999754
No 467
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=23.26 E-value=26 Score=36.64 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.0
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
|...+..|++|+|||..|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 667788999999999988
No 468
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=23.21 E-value=61 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
-..|+++=. -++-.+++..-..++..|.+|+|||..+-+
T Consensus 6 ivgq~~~~~----al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 6 IVGQDEMKL----ALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred cccHHHHHH----HHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 345654433 344455555556788999999999987753
No 469
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=23.13 E-value=39 Score=31.70 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.7
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
+-.+|..|+.|+||||--.
T Consensus 143 ~di~fGiGpAGTGKTyLav 161 (348)
T COG1702 143 HDIVFGIGPAGTGKTYLAV 161 (348)
T ss_pred cCeeeeecccccCChhhhH
Confidence 3468999999999999764
No 470
>PRK04182 cytidylate kinase; Provisional
Probab=23.12 E-value=37 Score=27.22 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||...
T Consensus 3 I~i~G~~GsGKstia 17 (180)
T PRK04182 3 ITISGPPGSGKTTVA 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999743
No 471
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=23.06 E-value=47 Score=32.53 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..|..++.|.+ |++..+||||||...
T Consensus 58 ~~IP~~l~g~D--vi~~A~TGsGKT~Af 83 (513)
T COG0513 58 AAIPLILAGRD--VLGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556788866 577789999998754
No 472
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=23.03 E-value=27 Score=29.48 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=13.0
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+.
T Consensus 25 ~~i~G~nGsGKStll~ 40 (197)
T cd03278 25 TAIVGPNGSGKSNIID 40 (197)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3467999999998773
No 473
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=23.02 E-value=45 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|.+.......-..|...|.+|+|||..+.
T Consensus 14 ~~~~~~~~~~~~~v~ivG~~~~GKSsli~ 42 (196)
T PRK00454 14 PKLEQLPPDDGPEIAFAGRSNVGKSSLIN 42 (196)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHH
Confidence 55666666666678899999999998774
No 474
>PTZ00035 Rad51 protein; Provisional
Probab=23.02 E-value=69 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHhcC-C--CEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISG-S--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G-~--n~ti~aYGqtgSGKTyTm 50 (241)
..+-++.++.| + ...+.-+|++|||||.-+
T Consensus 103 G~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 103 GSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 44667777774 3 455778999999999755
No 475
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=22.93 E-value=42 Score=25.64 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.0
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|.+|+|||..+
T Consensus 5 ~i~~~G~~g~GKttl~ 20 (168)
T cd04163 5 FVAIVGRPNVGKSTLL 20 (168)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999866
No 476
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.93 E-value=48 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=10.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|++ |+.|||||.--
T Consensus 6 Iva-G~NGsGKstv~ 19 (187)
T COG4185 6 IVA-GPNGSGKSTVY 19 (187)
T ss_pred EEe-cCCCCCceeee
Confidence 444 99999998654
No 477
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=22.87 E-value=40 Score=30.33 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=19.7
Q ss_pred HHHHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISG---SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G---~n~ti~aYGqtgSGKTyTm 50 (241)
+..++..++.| ....++.||..|+|||..+
T Consensus 61 l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 61 LQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 33444444444 3366889999999998765
No 478
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=22.83 E-value=29 Score=31.16 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=15.2
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+.-+|++|||||..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~ 129 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLR 129 (270)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 467788999999998875
No 479
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=22.74 E-value=69 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHhcC-CCEEEEcccccCCCcceee
Q psy9852 27 AVISG-SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G-~n~ti~aYGqtgSGKTyTm 50 (241)
.+-.| ..-+++-||+.|+|||..+
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33445 3456888999999998665
No 480
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=22.73 E-value=45 Score=33.34 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=16.5
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..|+-+|++|+||++.-
T Consensus 346 ~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 346 KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred CcCCCEEEECCCCcCHHHHH
Confidence 45677999999999997654
No 481
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=22.63 E-value=29 Score=32.39 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.6
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+--+|++|||||..+-
T Consensus 31 vaLlGpSGaGKsTlLR 46 (345)
T COG1118 31 VALLGPSGAGKSTLLR 46 (345)
T ss_pred EEEECCCCCcHHHHHH
Confidence 3457999999998763
No 482
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=22.62 E-value=38 Score=26.28 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|+|||..+
T Consensus 3 v~v~G~~~~GKTtli 17 (164)
T smart00175 3 IILIGDSGVGKSSLL 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 483
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=22.58 E-value=28 Score=26.65 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|.+|+|||..+
T Consensus 3 ~i~l~G~~~~GKstli 18 (157)
T cd04164 3 KVVIVGKPNVGKSSLL 18 (157)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567799999999766
No 484
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=22.53 E-value=37 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-.|..|||||+.-
T Consensus 4 ~i~~~G~~GsGKst~~ 19 (171)
T PRK03731 4 PLFLVGARGCGKTTVG 19 (171)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4666799999999764
No 485
>PRK06851 hypothetical protein; Provisional
Probab=22.51 E-value=46 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.0
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.++++.+-.++.-|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 456666788888888999999999877
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=22.50 E-value=30 Score=29.06 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 33 ~~l~G~nGsGKSTLl 47 (218)
T cd03255 33 VAIVGPSGSGKSTLL 47 (218)
T ss_pred EEEEcCCCCCHHHHH
Confidence 455699999999765
No 487
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=22.42 E-value=33 Score=35.49 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=15.6
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..+.+|+||||||..+.
T Consensus 426 ~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3567789999999999873
No 488
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=22.29 E-value=36 Score=32.99 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.9
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
..|+-+|++|+|||..
T Consensus 51 ~~ILliGp~G~GKT~L 66 (443)
T PRK05201 51 KNILMIGPTGVGKTEI 66 (443)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999854
No 489
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=22.25 E-value=31 Score=32.10 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=12.8
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+--.|++|||||..|-
T Consensus 33 ~~l~GpsGsGKSTLLr 48 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLR 48 (353)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556999999998764
No 490
>KOG0924|consensus
Probab=22.23 E-value=44 Score=34.55 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.4
Q ss_pred CCCEEEEcccccCCCcceeec
Q psy9852 31 GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+-|-.|+..|.||||||.-+-
T Consensus 369 r~n~vvvivgETGSGKTTQl~ 389 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQLA 389 (1042)
T ss_pred hhCcEEEEEecCCCCchhhhH
Confidence 557778889999999998764
No 491
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=22.21 E-value=87 Score=34.69 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.7
Q ss_pred cCCCEEEEcccccCCCccee
Q psy9852 30 SGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyT 49 (241)
++-|.||+.-|.+|+|||-.
T Consensus 149 ~~eNQtIiISGESGAGKTe~ 168 (1463)
T COG5022 149 EKENQTIIISGESGAGKTEN 168 (1463)
T ss_pred cCCCceEEEecCCCCCchHH
Confidence 48899999999999999843
No 492
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.15 E-value=83 Score=29.59 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=15.3
Q ss_pred HhcCCCE-EEEcccccCCCccee
Q psy9852 28 VISGSDG-CLFCFGHARLGKSYT 49 (241)
Q Consensus 28 vl~G~n~-ti~aYGqtgSGKTyT 49 (241)
+-.|.-. .++-||+.|+|||..
T Consensus 32 ~~~~~~~ha~lf~Gp~G~GKtt~ 54 (397)
T PRK14955 32 LRMGRVGHGYIFSGLRGVGKTTA 54 (397)
T ss_pred HHhCCcceeEEEECCCCCCHHHH
Confidence 3345443 377799999999954
No 493
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=22.13 E-value=46 Score=30.46 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+.-|+-.|.+|+||++..
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 45677899999999998765
No 494
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.13 E-value=69 Score=31.48 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=17.4
Q ss_pred HHhcCCCE-EEEcccccCCCcceee
Q psy9852 27 AVISGSDG-CLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G~n~-ti~aYGqtgSGKTyTm 50 (241)
.+-.|.-. .++-+|+.|+|||.+.
T Consensus 28 a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 28 AFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHcCCCCceEEEECCCCccHHHHH
Confidence 33445544 6889999999999843
No 495
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=22.13 E-value=31 Score=35.85 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.8
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
++..+..|+||+|||..|
T Consensus 456 ~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556789999999999988
No 496
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.00 E-value=31 Score=33.81 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.8
Q ss_pred cccccCCCcceeec
Q psy9852 38 CFGHARLGKSYTMV 51 (241)
Q Consensus 38 aYGqtgSGKTyTm~ 51 (241)
.+|.||||||-..+
T Consensus 2 L~g~TGsGKT~v~l 15 (505)
T TIGR00595 2 LFGVTGSGKTEVYL 15 (505)
T ss_pred ccCCCCCCHHHHHH
Confidence 58999999997754
No 497
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.98 E-value=30 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.1
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
.-.+..|..|+|||+|+.
T Consensus 161 ~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 345567999999999864
No 498
>KOG0734|consensus
Probab=21.98 E-value=84 Score=31.76 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.3
Q ss_pred EEEcccccCCCcc--------------eeeccCCCCCCCCCchHHHHHHHHHHHHhcc
Q psy9852 35 CLFCFGHARLGKS--------------YTMVGSPQSSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 35 ti~aYGqtgSGKT--------------yTm~G~~~~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
-|+.-|+.|+||| |-|-|+.=++---|+=-|-+++||.......
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A 396 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARA 396 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcC
Confidence 4788899999998 3444555444456888899999999988764
No 499
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=21.83 E-value=41 Score=25.55 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=12.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
|...|+.|+|||..+.
T Consensus 2 i~i~G~~~~GKssl~~ 17 (159)
T cd04159 2 ITLVGLQNSGKTTLVN 17 (159)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3457999999997763
No 500
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.81 E-value=32 Score=29.30 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 34 ~~l~G~nGsGKSTLl 48 (233)
T cd03258 34 FGIIGRSGAGKSTLI 48 (233)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999765
Done!