Query psy9852
Match_columns 241
No_of_seqs 148 out of 1270
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:18:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 3.6E-52 1.2E-56 384.8 12.0 209 1-229 52-266 (365)
2 1bg2_A Kinesin; motor protein, 100.0 1E-51 3.5E-56 376.6 14.8 216 1-228 45-268 (325)
3 2owm_A Nckin3-434, related to 100.0 3.6E-51 1.2E-55 386.3 16.8 212 1-229 97-327 (443)
4 2zfi_A Kinesin-like protein KI 100.0 3E-51 1E-55 378.8 14.9 213 1-229 49-276 (366)
5 3lre_A Kinesin-like protein KI 100.0 5.9E-51 2E-55 375.5 16.3 205 1-229 73-286 (355)
6 3bfn_A Kinesin-like protein KI 100.0 4.1E-51 1.4E-55 380.0 15.1 212 1-227 66-289 (388)
7 1t5c_A CENP-E protein, centrom 100.0 2.5E-50 8.7E-55 370.5 18.5 214 1-228 45-271 (349)
8 2vvg_A Kinesin-2; motor protei 100.0 5E-51 1.7E-55 375.3 13.0 204 1-229 57-269 (350)
9 1goj_A Kinesin, kinesin heavy 100.0 8.3E-51 2.8E-55 374.5 14.4 213 1-228 48-272 (355)
10 3b6u_A Kinesin-like protein KI 100.0 7.9E-51 2.7E-55 376.5 13.2 212 1-228 69-295 (372)
11 2h58_A Kinesin-like protein KI 100.0 2.1E-50 7.2E-55 368.6 14.8 205 1-229 49-262 (330)
12 3cob_A Kinesin heavy chain-lik 100.0 3E-50 1E-54 372.4 14.2 205 1-229 48-261 (369)
13 1f9v_A Kinesin-like protein KA 100.0 7.4E-50 2.5E-54 367.2 15.0 206 1-229 53-272 (347)
14 4a14_A Kinesin, kinesin-like p 100.0 1.6E-49 5.6E-54 364.6 15.4 216 1-229 51-277 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 1.3E-49 4.5E-54 366.4 14.6 211 1-229 52-278 (354)
16 2rep_A Kinesin-like protein KI 100.0 1.4E-49 4.8E-54 368.6 14.0 209 1-229 84-310 (376)
17 3nwn_A Kinesin-like protein KI 100.0 1.3E-49 4.3E-54 367.1 12.3 212 1-227 73-300 (359)
18 2nr8_A Kinesin-like protein KI 100.0 1.3E-49 4.4E-54 366.8 12.3 212 1-229 72-291 (358)
19 1x88_A Kinesin-like protein KI 100.0 1.1E-49 3.9E-54 367.4 10.9 211 1-229 56-284 (359)
20 3t0q_A AGR253WP; kinesin, alph 100.0 1E-48 3.5E-53 359.9 15.5 206 1-229 54-275 (349)
21 2wbe_C Bipolar kinesin KRP-130 100.0 8.7E-49 3E-53 363.1 14.6 215 1-228 68-304 (373)
22 2heh_A KIF2C protein; kinesin, 100.0 1.2E-48 4.2E-53 363.2 12.4 211 1-228 102-324 (387)
23 4etp_A Kinesin-like protein KA 100.0 1.8E-48 6.2E-53 364.2 13.4 206 1-229 109-328 (403)
24 1v8k_A Kinesin-like protein KI 100.0 1.9E-48 6.5E-53 364.1 12.7 211 1-228 122-344 (410)
25 3u06_A Protein claret segregat 100.0 2E-48 6.9E-53 364.6 12.0 212 1-228 107-325 (412)
26 1ry6_A Internal kinesin; kines 100.0 7.3E-48 2.5E-52 355.4 13.7 209 1-229 51-265 (360)
27 3dc4_A Kinesin-like protein NO 100.0 3.7E-48 1.3E-52 355.4 9.7 213 1-239 62-285 (344)
28 4h1g_A Maltose binding protein 100.0 7.4E-46 2.5E-50 367.6 15.2 206 1-229 431-644 (715)
29 2o0a_A S.cerevisiae chromosome 99.8 2.6E-22 8.8E-27 178.2 4.5 120 1-142 58-185 (298)
30 3ec2_A DNA replication protein 94.5 0.0075 2.6E-07 48.3 0.4 49 2-51 7-56 (180)
31 2w58_A DNAI, primosome compone 93.2 0.027 9.2E-07 45.6 1.4 48 3-51 23-72 (202)
32 2qgz_A Helicase loader, putati 91.7 0.054 1.8E-06 47.8 1.4 48 3-51 122-170 (308)
33 1jbk_A CLPB protein; beta barr 89.9 0.14 4.9E-06 39.6 2.3 30 21-50 31-60 (195)
34 2p65_A Hypothetical protein PF 89.1 0.16 5.5E-06 39.4 2.0 30 21-50 31-60 (187)
35 3te6_A Regulatory protein SIR3 87.8 0.21 7.3E-06 44.6 2.1 23 28-50 40-62 (318)
36 4b4t_K 26S protease regulatory 87.2 0.44 1.5E-05 44.3 3.9 75 4-78 171-265 (428)
37 3t15_A Ribulose bisphosphate c 86.9 0.25 8.7E-06 42.9 2.1 72 3-74 1-91 (293)
38 4b4t_M 26S protease regulatory 86.9 0.64 2.2E-05 43.3 4.9 76 3-78 179-274 (434)
39 4anj_A Unconventional myosin-V 86.1 0.63 2.2E-05 48.0 4.8 37 135-174 182-218 (1052)
40 1l8q_A Chromosomal replication 85.5 0.31 1.1E-05 42.4 1.9 48 2-51 8-55 (324)
41 2bjv_A PSP operon transcriptio 84.6 0.31 1E-05 41.1 1.4 43 2-50 3-46 (265)
42 2r62_A Cell division protease 84.6 0.38 1.3E-05 40.4 1.9 48 2-50 8-61 (268)
43 3cf0_A Transitional endoplasmi 83.5 0.35 1.2E-05 42.0 1.3 18 33-50 49-66 (301)
44 2chg_A Replication factor C sm 82.8 0.51 1.7E-05 37.3 1.9 21 30-50 35-55 (226)
45 3h4m_A Proteasome-activating n 82.8 0.36 1.2E-05 40.9 1.0 20 32-51 50-69 (285)
46 4b4t_J 26S protease regulatory 82.7 0.78 2.7E-05 42.4 3.3 75 4-78 147-241 (405)
47 2v1u_A Cell division control p 82.5 0.28 9.7E-06 42.8 0.3 40 10-50 21-61 (387)
48 1d2n_A N-ethylmaleimide-sensit 82.4 0.93 3.2E-05 38.3 3.5 27 24-50 52-81 (272)
49 3bos_A Putative DNA replicatio 81.9 0.64 2.2E-05 37.5 2.2 20 31-50 50-69 (242)
50 1g8p_A Magnesium-chelatase 38 81.1 0.51 1.7E-05 41.0 1.4 23 28-50 40-62 (350)
51 4b4t_L 26S protease subunit RP 80.5 1.4 4.9E-05 41.0 4.3 76 3-78 179-274 (437)
52 1ixz_A ATP-dependent metallopr 80.5 0.22 7.5E-06 41.7 -1.1 16 36-51 52-67 (254)
53 1fnn_A CDC6P, cell division co 80.0 1.1 3.7E-05 39.2 3.2 39 11-50 20-61 (389)
54 3d8b_A Fidgetin-like protein 1 79.4 0.32 1.1E-05 43.4 -0.5 20 31-50 115-134 (357)
55 3uk6_A RUVB-like 2; hexameric 79.3 0.96 3.3E-05 39.6 2.6 40 11-51 47-88 (368)
56 2z4s_A Chromosomal replication 79.0 0.72 2.5E-05 42.5 1.8 47 2-51 102-148 (440)
57 2c9o_A RUVB-like 1; hexameric 78.9 0.98 3.4E-05 41.6 2.7 43 7-50 35-80 (456)
58 3b9p_A CG5977-PA, isoform A; A 78.8 0.38 1.3E-05 41.1 -0.2 44 33-76 54-111 (297)
59 4b4t_H 26S protease regulatory 78.1 1.7 5.8E-05 40.9 4.0 76 3-78 207-302 (467)
60 4b4t_I 26S protease regulatory 78.1 2.6 8.8E-05 39.3 5.2 65 14-78 192-275 (437)
61 4etp_B Spindle POLE BODY-assoc 77.8 8.2 0.00028 34.6 8.1 88 1-109 93-184 (333)
62 1qde_A EIF4A, translation init 77.3 0.95 3.3E-05 36.7 1.8 24 24-49 44-67 (224)
63 1xwi_A SKD1 protein; VPS4B, AA 77.0 0.63 2.2E-05 40.9 0.7 44 34-77 46-104 (322)
64 3syl_A Protein CBBX; photosynt 76.9 1.7 5.8E-05 37.0 3.5 20 31-50 65-84 (309)
65 2x8a_A Nuclear valosin-contain 76.2 0.4 1.4E-05 41.3 -0.8 73 4-76 9-101 (274)
66 2qz4_A Paraplegin; AAA+, SPG7, 76.1 2.2 7.5E-05 35.2 3.8 45 32-76 38-96 (262)
67 2gxq_A Heat resistant RNA depe 75.9 1.1 3.7E-05 35.7 1.8 24 24-49 31-54 (207)
68 2kjq_A DNAA-related protein; s 75.7 0.68 2.3E-05 36.2 0.5 17 34-50 37-53 (149)
69 1iy2_A ATP-dependent metallopr 75.6 0.36 1.2E-05 41.1 -1.2 17 35-51 75-91 (278)
70 1p9r_A General secretion pathw 75.1 1.2 4.1E-05 41.1 2.1 28 23-50 157-184 (418)
71 2qby_B CDC6 homolog 3, cell di 74.2 1.4 4.8E-05 38.5 2.2 38 12-50 24-62 (384)
72 1sxj_C Activator 1 40 kDa subu 73.7 1.3 4.6E-05 38.6 2.0 26 26-51 39-64 (340)
73 3jvv_A Twitching mobility prot 73.6 1.2 4E-05 40.2 1.6 27 24-50 114-140 (356)
74 3n70_A Transport activator; si 73.0 1.5 5.2E-05 33.5 1.9 20 31-50 22-41 (145)
75 1vec_A ATP-dependent RNA helic 73.0 2 6.9E-05 34.1 2.7 25 24-50 33-57 (206)
76 3bor_A Human initiation factor 72.1 1.4 4.7E-05 36.4 1.6 25 24-50 60-84 (237)
77 3dkp_A Probable ATP-dependent 71.1 2.1 7.1E-05 35.2 2.4 24 24-49 59-82 (245)
78 3pfi_A Holliday junction ATP-d 70.8 2.7 9.1E-05 36.4 3.2 40 11-51 32-73 (338)
79 2qby_A CDC6 homolog 1, cell di 70.7 0.98 3.4E-05 39.2 0.4 20 31-50 43-62 (386)
80 1njg_A DNA polymerase III subu 70.5 1.8 6.2E-05 34.3 1.9 17 34-50 46-62 (250)
81 3co5_A Putative two-component 70.2 1 3.5E-05 34.5 0.3 29 22-51 17-45 (143)
82 3b6e_A Interferon-induced heli 70.0 0.99 3.4E-05 36.0 0.2 24 25-50 42-65 (216)
83 1iqp_A RFCS; clamp loader, ext 70.0 1.9 6.5E-05 36.6 2.0 37 10-50 27-63 (327)
84 2qp9_X Vacuolar protein sortin 69.3 1.3 4.5E-05 39.4 0.9 17 34-50 85-101 (355)
85 1gvn_B Zeta; postsegregational 69.2 4.3 0.00015 35.0 4.2 32 19-50 14-50 (287)
86 3eie_A Vacuolar protein sortin 69.1 1.2 4.1E-05 38.9 0.5 44 34-77 52-109 (322)
87 1w5s_A Origin recognition comp 68.3 3 0.0001 36.7 3.0 29 22-50 35-69 (412)
88 3ly5_A ATP-dependent RNA helic 68.2 1.9 6.4E-05 36.4 1.6 25 23-49 83-107 (262)
89 4fcw_A Chaperone protein CLPB; 68.0 1.7 5.8E-05 36.9 1.3 17 34-50 48-64 (311)
90 1sxj_D Activator 1 41 kDa subu 67.9 1.5 5.1E-05 37.9 0.9 27 24-50 49-75 (353)
91 1lv7_A FTSH; alpha/beta domain 67.7 3.5 0.00012 34.2 3.2 18 33-50 45-62 (257)
92 1ofh_A ATP-dependent HSL prote 67.7 2 6.7E-05 36.3 1.6 18 33-50 50-67 (310)
93 2pl3_A Probable ATP-dependent 67.6 2.7 9.3E-05 34.3 2.4 24 24-49 55-78 (236)
94 3iuy_A Probable ATP-dependent 67.3 2.8 9.5E-05 34.0 2.4 24 25-50 51-74 (228)
95 2eyu_A Twitching motility prot 66.9 2 6.9E-05 36.7 1.5 19 32-50 24-42 (261)
96 3vfd_A Spastin; ATPase, microt 66.6 1.2 4.1E-05 39.9 0.1 19 33-51 148-166 (389)
97 1u0j_A DNA replication protein 66.5 3.1 0.00011 36.2 2.6 28 23-50 91-121 (267)
98 3fmo_B ATP-dependent RNA helic 66.4 2.5 8.7E-05 36.5 2.1 27 24-50 122-148 (300)
99 1wrb_A DJVLGB; RNA helicase, D 66.2 3 0.0001 34.5 2.5 25 24-50 53-77 (253)
100 3eiq_A Eukaryotic initiation f 66.1 3.2 0.00011 36.4 2.8 26 23-50 69-94 (414)
101 1t6n_A Probable ATP-dependent 65.8 3.2 0.00011 33.4 2.4 25 24-50 44-68 (220)
102 3fmp_B ATP-dependent RNA helic 65.4 3 0.0001 38.0 2.5 26 24-49 122-147 (479)
103 2chq_A Replication factor C sm 64.8 1.7 5.8E-05 36.8 0.6 21 30-50 35-55 (319)
104 2r44_A Uncharacterized protein 64.3 1.7 5.7E-05 37.7 0.5 16 35-50 48-63 (331)
105 2zan_A Vacuolar protein sortin 63.9 1.4 4.9E-05 40.5 -0.0 17 34-50 168-184 (444)
106 3pxg_A Negative regulator of g 63.8 4.2 0.00015 37.5 3.2 30 23-52 191-220 (468)
107 3hu3_A Transitional endoplasmi 63.6 2.6 8.9E-05 39.5 1.7 21 31-51 236-256 (489)
108 3llm_A ATP-dependent RNA helic 63.0 3.5 0.00012 33.9 2.3 25 24-50 69-93 (235)
109 1hqc_A RUVB; extended AAA-ATPa 62.8 4.2 0.00014 34.7 2.8 39 11-50 15-55 (324)
110 2oap_1 GSPE-2, type II secreti 62.5 3.3 0.00011 39.1 2.2 22 28-51 257-278 (511)
111 3h1t_A Type I site-specific re 62.5 3.7 0.00013 38.6 2.6 29 21-50 187-215 (590)
112 3fht_A ATP-dependent RNA helic 62.0 3.5 0.00012 36.0 2.2 28 23-50 54-81 (412)
113 2oxc_A Probable ATP-dependent 61.9 4.1 0.00014 33.2 2.5 24 24-49 54-77 (230)
114 3ber_A Probable ATP-dependent 61.8 4 0.00014 34.0 2.4 25 24-50 73-97 (249)
115 1tue_A Replication protein E1; 61.3 2.5 8.7E-05 35.6 1.1 25 26-50 49-75 (212)
116 3pvs_A Replication-associated 61.0 3.2 0.00011 38.4 1.8 41 10-51 28-68 (447)
117 3fe2_A Probable ATP-dependent 60.9 3.8 0.00013 33.7 2.1 24 25-50 60-83 (242)
118 2p5t_B PEZT; postsegregational 60.4 4.1 0.00014 34.1 2.2 16 34-49 33-48 (253)
119 1sxj_B Activator 1 37 kDa subu 60.0 3.1 0.00011 35.2 1.4 22 29-50 38-59 (323)
120 1q0u_A Bstdead; DEAD protein, 59.9 3 0.0001 33.7 1.2 23 25-49 35-57 (219)
121 3oiy_A Reverse gyrase helicase 59.5 4.5 0.00015 35.9 2.5 24 24-49 29-52 (414)
122 3pey_A ATP-dependent RNA helic 59.5 4.1 0.00014 35.2 2.2 27 24-50 35-61 (395)
123 2j0s_A ATP-dependent RNA helic 59.4 4.6 0.00016 35.5 2.5 25 24-50 67-91 (410)
124 2ewv_A Twitching motility prot 58.9 2.6 8.8E-05 38.0 0.7 27 24-50 127-153 (372)
125 3u61_B DNA polymerase accessor 58.1 5.5 0.00019 34.1 2.7 18 34-51 49-66 (324)
126 1qvr_A CLPB protein; coiled co 57.2 2.6 8.9E-05 42.0 0.5 31 21-51 179-209 (854)
127 1n0w_A DNA repair protein RAD5 57.0 3.7 0.00013 33.3 1.3 29 23-51 11-42 (243)
128 3pxi_A Negative regulator of g 56.6 6.4 0.00022 38.5 3.2 31 22-52 190-220 (758)
129 3upu_A ATP-dependent DNA helic 56.3 5.5 0.00019 36.5 2.5 36 10-50 27-62 (459)
130 1ojl_A Transcriptional regulat 56.0 4.7 0.00016 34.9 1.9 20 31-50 23-42 (304)
131 1in4_A RUVB, holliday junction 55.8 2.3 8E-05 37.3 -0.1 16 35-50 53-68 (334)
132 3i5x_A ATP-dependent RNA helic 55.7 6.5 0.00022 36.4 3.0 26 24-49 102-127 (563)
133 1s2m_A Putative ATP-dependent 55.6 5.1 0.00018 35.0 2.1 25 24-50 51-75 (400)
134 4b3f_X DNA-binding protein smu 55.5 4.3 0.00015 39.0 1.7 26 25-51 198-223 (646)
135 1rz3_A Hypothetical protein rb 55.4 6.9 0.00023 31.3 2.7 31 20-50 6-39 (201)
136 2z0m_A 337AA long hypothetical 54.9 6.2 0.00021 33.3 2.5 25 25-51 25-49 (337)
137 4gp7_A Metallophosphoesterase; 54.8 2.7 9.2E-05 33.0 0.1 17 35-51 11-27 (171)
138 2fz4_A DNA repair protein RAD2 54.6 4.8 0.00016 33.5 1.7 23 27-51 104-126 (237)
139 1sxj_E Activator 1 40 kDa subu 54.3 3 0.0001 36.1 0.4 16 36-51 39-54 (354)
140 3cf2_A TER ATPase, transitiona 53.6 6.5 0.00022 39.4 2.7 75 3-77 202-296 (806)
141 3c8u_A Fructokinase; YP_612366 53.5 6.5 0.00022 31.6 2.3 31 20-50 7-39 (208)
142 1r6b_X CLPA protein; AAA+, N-t 53.4 5.4 0.00018 38.9 2.1 30 22-51 196-225 (758)
143 1jr3_A DNA polymerase III subu 52.5 5.8 0.0002 34.4 1.9 38 10-51 18-56 (373)
144 3fho_A ATP-dependent RNA helic 52.3 4.6 0.00016 37.4 1.3 25 25-49 150-174 (508)
145 2i4i_A ATP-dependent RNA helic 52.2 7 0.00024 34.3 2.4 24 25-50 46-69 (417)
146 4a74_A DNA repair and recombin 51.3 6.2 0.00021 31.5 1.8 28 23-50 12-42 (231)
147 3b85_A Phosphate starvation-in 50.5 5.9 0.0002 32.6 1.5 26 23-50 14-39 (208)
148 2w0m_A SSO2452; RECA, SSPF, un 50.3 5 0.00017 32.0 1.1 28 24-51 11-41 (235)
149 2v1x_A ATP-dependent DNA helic 49.5 8.9 0.00031 36.6 2.9 24 24-49 52-75 (591)
150 1xti_A Probable ATP-dependent 49.2 8.2 0.00028 33.4 2.4 25 24-50 38-62 (391)
151 2db3_A ATP-dependent RNA helic 49.0 8.4 0.00029 34.8 2.5 23 25-49 87-109 (434)
152 3hws_A ATP-dependent CLP prote 48.5 4.5 0.00015 35.6 0.5 18 33-50 51-68 (363)
153 3lw7_A Adenylate kinase relate 48.3 5 0.00017 30.3 0.7 17 35-51 3-19 (179)
154 1hv8_A Putative ATP-dependent 48.2 5.8 0.0002 33.8 1.2 25 25-50 37-61 (367)
155 1um8_A ATP-dependent CLP prote 47.8 4.6 0.00016 35.7 0.5 18 33-50 72-89 (376)
156 3sqw_A ATP-dependent RNA helic 47.6 10 0.00036 35.5 3.0 26 24-49 51-76 (579)
157 3e70_C DPA, signal recognition 47.1 12 0.0004 33.2 3.0 17 34-50 130-146 (328)
158 4a2p_A RIG-I, retinoic acid in 47.1 9.2 0.00031 34.9 2.4 25 24-50 15-39 (556)
159 3pxi_A Negative regulator of g 46.4 12 0.00041 36.5 3.3 38 12-50 495-538 (758)
160 3tr0_A Guanylate kinase, GMP k 46.2 4.4 0.00015 32.0 0.1 15 36-50 10-24 (205)
161 2qnr_A Septin-2, protein NEDD5 46.1 4.7 0.00016 35.0 0.3 24 27-50 12-35 (301)
162 1sxj_A Activator 1 95 kDa subu 46.1 9 0.00031 35.7 2.2 17 34-50 78-94 (516)
163 1fuu_A Yeast initiation factor 46.0 6.6 0.00023 34.0 1.3 24 24-49 51-74 (394)
164 2gza_A Type IV secretion syste 45.9 9.5 0.00033 33.9 2.3 22 28-51 172-193 (361)
165 1rif_A DAR protein, DNA helica 45.6 5.3 0.00018 33.7 0.5 24 26-51 123-146 (282)
166 3a00_A Guanylate kinase, GMP k 45.5 4.3 0.00015 32.1 -0.0 15 36-50 4-18 (186)
167 1qvr_A CLPB protein; coiled co 45.4 14 0.00049 36.6 3.7 17 34-50 589-605 (854)
168 3sop_A Neuronal-specific septi 45.2 4.8 0.00017 34.5 0.2 18 33-50 2-19 (270)
169 3nbx_X ATPase RAVA; AAA+ ATPas 45.1 11 0.00038 35.4 2.7 18 34-51 42-59 (500)
170 4ag6_A VIRB4 ATPase, type IV s 44.9 4.1 0.00014 36.3 -0.3 18 33-50 35-52 (392)
171 1ly1_A Polynucleotide kinase; 44.7 6.2 0.00021 30.2 0.8 16 35-50 4-19 (181)
172 1ye8_A Protein THEP1, hypothet 44.3 5 0.00017 32.1 0.1 15 36-50 3-17 (178)
173 2ehv_A Hypothetical protein PH 44.2 5 0.00017 32.6 0.1 17 35-51 32-48 (251)
174 2cvh_A DNA repair and recombin 44.2 11 0.00037 29.9 2.2 29 23-51 7-38 (220)
175 4gl2_A Interferon-induced heli 44.2 11 0.00037 35.9 2.5 26 24-51 15-40 (699)
176 2qag_C Septin-7; cell cycle, c 44.1 5.3 0.00018 36.8 0.3 24 27-50 25-48 (418)
177 2jlq_A Serine protease subunit 44.1 7.2 0.00025 35.6 1.2 24 25-49 12-35 (451)
178 1r6b_X CLPA protein; AAA+, N-t 44.1 16 0.00055 35.5 3.8 28 23-50 472-505 (758)
179 1qhx_A CPT, protein (chloramph 43.9 6.5 0.00022 30.3 0.8 16 35-50 5-20 (178)
180 1kgd_A CASK, peripheral plasma 43.7 5.1 0.00018 31.5 0.1 16 35-50 7-22 (180)
181 1c4o_A DNA nucleotide excision 43.7 15 0.0005 35.6 3.4 45 1-51 1-46 (664)
182 3trf_A Shikimate kinase, SK; a 43.5 6.6 0.00023 30.5 0.8 16 35-50 7-22 (185)
183 2qen_A Walker-type ATPase; unk 43.5 8.9 0.00031 32.5 1.7 18 34-51 32-49 (350)
184 1w36_D RECD, exodeoxyribonucle 43.4 4.8 0.00016 38.6 -0.1 18 34-51 165-182 (608)
185 2gk6_A Regulator of nonsense t 43.2 7.7 0.00026 37.2 1.3 17 35-51 197-213 (624)
186 1wp9_A ATP-dependent RNA helic 43.1 7.3 0.00025 34.2 1.1 25 24-51 17-41 (494)
187 3tbk_A RIG-I helicase domain; 43.1 12 0.0004 34.0 2.4 24 25-50 13-36 (555)
188 1lkx_A Myosin IE heavy chain; 42.9 13 0.00046 36.5 3.0 22 29-50 90-111 (697)
189 2ykg_A Probable ATP-dependent 42.7 12 0.00039 35.7 2.5 23 25-49 22-44 (696)
190 3tau_A Guanylate kinase, GMP k 42.6 5.4 0.00019 32.2 0.1 17 35-51 10-26 (208)
191 2fwr_A DNA repair protein RAD2 42.0 8.5 0.00029 34.8 1.3 25 25-51 102-126 (472)
192 3iij_A Coilin-interacting nucl 41.7 6.7 0.00023 30.5 0.5 16 35-50 13-28 (180)
193 1e9r_A Conjugal transfer prote 41.5 4.3 0.00015 36.6 -0.7 18 33-50 53-70 (437)
194 1lvg_A Guanylate kinase, GMP k 41.5 5.3 0.00018 32.1 -0.1 16 36-51 7-22 (198)
195 1znw_A Guanylate kinase, GMP k 41.2 5.9 0.0002 31.8 0.1 15 36-50 23-37 (207)
196 1zp6_A Hypothetical protein AT 41.0 8.4 0.00029 30.0 1.0 18 34-51 10-27 (191)
197 3b9q_A Chloroplast SRP recepto 40.6 6.1 0.00021 34.5 0.1 16 35-50 102-117 (302)
198 3lfu_A DNA helicase II; SF1 he 40.6 6.7 0.00023 37.0 0.4 20 32-51 21-40 (647)
199 1w9i_A Myosin II heavy chain; 40.6 15 0.00052 36.6 3.0 21 30-50 169-189 (770)
200 1rj9_A FTSY, signal recognitio 40.5 6.7 0.00023 34.3 0.4 17 35-51 104-120 (304)
201 2v26_A Myosin VI; calmodulin-b 40.2 15 0.00053 36.5 3.0 21 30-50 137-157 (784)
202 1i84_S Smooth muscle myosin he 40.0 17 0.0006 37.6 3.4 21 30-50 166-186 (1184)
203 2bdt_A BH3686; alpha-beta prot 40.0 6.4 0.00022 30.9 0.1 16 35-50 4-19 (189)
204 1kag_A SKI, shikimate kinase I 40.0 7.4 0.00025 29.8 0.5 16 35-50 6-21 (173)
205 1ypw_A Transitional endoplasmi 39.2 13 0.00044 36.9 2.3 75 3-77 202-296 (806)
206 2ce7_A Cell division protein F 38.8 21 0.00071 33.3 3.5 17 34-50 50-66 (476)
207 2dr3_A UPF0273 protein PH0284; 38.4 11 0.00038 30.3 1.4 26 25-50 12-40 (247)
208 2dhr_A FTSH; AAA+ protein, hex 38.4 6.5 0.00022 37.0 -0.0 16 35-50 66-81 (499)
209 1g8x_A Myosin II heavy chain f 38.3 17 0.00057 37.4 2.9 21 30-50 169-189 (1010)
210 1w7j_A Myosin VA; motor protei 38.3 17 0.00059 36.3 3.0 21 30-50 153-173 (795)
211 2ga8_A Hypothetical 39.9 kDa p 38.1 23 0.00079 32.0 3.6 23 28-50 19-41 (359)
212 3uie_A Adenylyl-sulfate kinase 38.0 14 0.00046 29.4 1.9 18 32-49 24-41 (200)
213 1kht_A Adenylate kinase; phosp 38.0 8.2 0.00028 29.8 0.5 16 35-50 5-20 (192)
214 2j41_A Guanylate kinase; GMP, 37.9 7.1 0.00024 30.7 0.1 16 35-50 8-23 (207)
215 3vaa_A Shikimate kinase, SK; s 37.9 9 0.00031 30.5 0.7 16 35-50 27-42 (199)
216 1gm5_A RECG; helicase, replica 37.9 14 0.00049 36.6 2.3 27 24-50 380-406 (780)
217 3lnc_A Guanylate kinase, GMP k 37.9 8.1 0.00028 31.5 0.5 15 36-50 30-44 (231)
218 2ycu_A Non muscle myosin 2C, a 37.6 18 0.0006 37.1 3.0 21 30-50 143-163 (995)
219 1kk8_A Myosin heavy chain, str 37.4 16 0.00055 36.7 2.6 21 30-50 166-186 (837)
220 1oyw_A RECQ helicase, ATP-depe 37.2 12 0.0004 35.1 1.5 25 24-50 33-57 (523)
221 3kb2_A SPBC2 prophage-derived 37.0 9.8 0.00034 28.8 0.8 16 35-50 3-18 (173)
222 2fna_A Conserved hypothetical 36.9 13 0.00043 31.6 1.5 18 34-51 31-48 (357)
223 2r8r_A Sensor protein; KDPD, P 36.8 7.6 0.00026 32.9 0.1 18 34-51 7-24 (228)
224 3kl4_A SRP54, signal recogniti 36.5 26 0.00089 32.3 3.7 18 34-51 98-115 (433)
225 4db1_A Myosin-7; S1DC, cardiac 36.4 24 0.0008 35.3 3.6 21 30-50 168-188 (783)
226 3kta_A Chromosome segregation 36.4 11 0.00037 29.2 1.0 16 35-50 28-43 (182)
227 2i3b_A HCR-ntpase, human cance 36.0 7.4 0.00025 31.5 -0.1 15 36-50 4-18 (189)
228 2px0_A Flagellar biosynthesis 35.6 8 0.00027 33.6 0.1 17 35-51 107-123 (296)
229 2dfs_A Myosin-5A; myosin-V, in 35.5 20 0.00068 37.0 3.0 20 30-49 153-172 (1080)
230 2rhm_A Putative kinase; P-loop 35.2 9.5 0.00033 29.6 0.5 17 34-50 6-22 (193)
231 1f2t_A RAD50 ABC-ATPase; DNA d 35.1 14 0.00047 28.4 1.4 16 35-50 25-40 (149)
232 1z6g_A Guanylate kinase; struc 35.0 7.8 0.00027 31.7 -0.1 15 36-50 26-40 (218)
233 3e1s_A Exodeoxyribonuclease V, 34.8 9.3 0.00032 36.4 0.4 18 34-51 205-222 (574)
234 2og2_A Putative signal recogni 34.7 8.6 0.00029 34.6 0.1 17 34-50 158-174 (359)
235 1uaa_A REP helicase, protein ( 34.7 10 0.00034 36.4 0.6 20 32-51 14-33 (673)
236 2ze6_A Isopentenyl transferase 34.6 11 0.00038 31.6 0.8 15 35-49 3-17 (253)
237 1odf_A YGR205W, hypothetical 3 34.3 25 0.00084 30.3 3.0 18 33-50 31-48 (290)
238 2pt7_A CAG-ALFA; ATPase, prote 34.3 7.4 0.00025 34.3 -0.4 22 28-51 168-189 (330)
239 2qor_A Guanylate kinase; phosp 34.0 10 0.00036 30.2 0.5 15 36-50 15-29 (204)
240 2yhs_A FTSY, cell division pro 34.0 16 0.00056 34.5 1.9 16 35-50 295-310 (503)
241 2xzl_A ATP-dependent helicase 33.9 13 0.00044 37.1 1.2 17 35-51 377-393 (802)
242 2orw_A Thymidine kinase; TMTK, 33.8 7.4 0.00025 31.1 -0.4 16 35-50 5-20 (184)
243 1gku_B Reverse gyrase, TOP-RG; 33.3 21 0.00071 36.6 2.7 23 24-48 64-86 (1054)
244 1knq_A Gluconate kinase; ALFA/ 33.3 12 0.00041 28.8 0.7 17 34-50 9-25 (175)
245 2b8t_A Thymidine kinase; deoxy 33.2 9.6 0.00033 31.9 0.2 19 33-51 12-30 (223)
246 1a5t_A Delta prime, HOLB; zinc 32.8 19 0.00064 31.3 2.0 27 24-50 14-41 (334)
247 3cm0_A Adenylate kinase; ATP-b 32.7 12 0.00042 28.9 0.7 16 35-50 6-21 (186)
248 1htw_A HI0065; nucleotide-bind 32.6 9.8 0.00034 29.8 0.1 17 34-50 34-50 (158)
249 3m6a_A ATP-dependent protease 32.5 10 0.00034 35.8 0.2 18 33-50 108-125 (543)
250 1moz_A ARL1, ADP-ribosylation 32.5 23 0.00077 26.8 2.3 28 24-51 8-36 (183)
251 2yvu_A Probable adenylyl-sulfa 32.4 14 0.00048 28.8 1.0 18 33-50 13-30 (186)
252 1nks_A Adenylate kinase; therm 32.4 11 0.00038 29.0 0.5 16 35-50 3-18 (194)
253 2wjy_A Regulator of nonsense t 32.2 15 0.0005 36.6 1.3 17 35-51 373-389 (800)
254 1y63_A LMAJ004144AAA protein; 32.0 12 0.0004 29.4 0.5 16 35-50 12-27 (184)
255 1tev_A UMP-CMP kinase; ploop, 32.0 12 0.00041 28.9 0.5 16 35-50 5-20 (196)
256 3k1j_A LON protease, ATP-depen 32.0 17 0.00058 34.6 1.7 28 22-51 51-78 (604)
257 1e6c_A Shikimate kinase; phosp 31.9 12 0.00041 28.5 0.5 15 36-50 5-19 (173)
258 1vma_A Cell division protein F 31.8 10 0.00035 33.2 0.1 18 34-51 105-122 (306)
259 4a4z_A Antiviral helicase SKI2 31.5 21 0.0007 36.4 2.3 24 24-49 47-70 (997)
260 1via_A Shikimate kinase; struc 31.2 12 0.00042 28.8 0.5 15 36-50 7-21 (175)
261 4a2w_A RIG-I, retinoic acid in 31.2 16 0.00056 36.7 1.5 26 24-51 256-281 (936)
262 3tif_A Uncharacterized ABC tra 31.1 11 0.00037 31.4 0.1 15 36-50 34-48 (235)
263 1pzn_A RAD51, DNA repair and r 30.9 27 0.00093 30.8 2.8 28 23-50 118-148 (349)
264 1uf9_A TT1252 protein; P-loop, 30.8 17 0.00057 28.4 1.3 20 31-50 6-25 (203)
265 2v6i_A RNA helicase; membrane, 30.8 16 0.00053 33.2 1.2 16 35-50 4-19 (431)
266 3t5d_A Septin-7; GTP-binding p 30.7 15 0.00052 30.8 1.0 22 29-50 4-25 (274)
267 2i1q_A DNA repair and recombin 30.6 24 0.00083 30.3 2.4 28 23-50 85-115 (322)
268 2vli_A Antibiotic resistance p 30.6 13 0.00045 28.6 0.5 16 35-50 7-22 (183)
269 3dm5_A SRP54, signal recogniti 30.3 36 0.0012 31.5 3.6 19 33-51 100-118 (443)
270 4a2q_A RIG-I, retinoic acid in 30.1 24 0.00081 34.6 2.4 26 24-51 256-281 (797)
271 1v5w_A DMC1, meiotic recombina 30.1 28 0.00094 30.5 2.7 29 23-51 109-140 (343)
272 3t61_A Gluconokinase; PSI-biol 30.0 13 0.00045 29.3 0.5 16 35-50 20-35 (202)
273 3asz_A Uridine kinase; cytidin 29.7 12 0.00039 29.8 0.1 16 35-50 8-23 (211)
274 2iyv_A Shikimate kinase, SK; t 29.6 14 0.00047 28.6 0.5 14 36-49 5-18 (184)
275 1s96_A Guanylate kinase, GMP k 29.4 12 0.00041 30.9 0.1 16 35-50 18-33 (219)
276 2pt5_A Shikimate kinase, SK; a 29.1 15 0.00053 27.7 0.7 14 36-49 3-16 (168)
277 2qag_A Septin-2, protein NEDD5 29.1 13 0.00044 33.1 0.3 25 27-51 31-55 (361)
278 2bwj_A Adenylate kinase 5; pho 29.1 14 0.00048 28.7 0.5 16 35-50 14-29 (199)
279 2r2a_A Uncharacterized protein 28.9 14 0.00049 30.1 0.5 15 36-50 8-22 (199)
280 1yks_A Genome polyprotein [con 28.7 18 0.00062 32.9 1.2 21 28-50 5-25 (440)
281 2bbw_A Adenylate kinase 4, AK4 28.6 16 0.00054 30.0 0.8 17 34-50 28-44 (246)
282 2z83_A Helicase/nucleoside tri 28.6 18 0.00062 33.0 1.2 15 35-49 23-37 (459)
283 4eun_A Thermoresistant glucoki 28.4 16 0.00055 29.0 0.7 15 35-49 31-45 (200)
284 2p6r_A Afuhel308 helicase; pro 28.2 17 0.00057 35.0 1.0 21 28-50 37-57 (702)
285 1qf9_A UMP/CMP kinase, protein 27.7 15 0.00052 28.2 0.5 16 35-50 8-23 (194)
286 1svm_A Large T antigen; AAA+ f 27.7 31 0.0011 31.0 2.6 17 34-50 170-186 (377)
287 3rc3_A ATP-dependent RNA helic 27.4 15 0.00052 35.8 0.5 47 28-77 152-202 (677)
288 2vhj_A Ntpase P4, P4; non- hyd 27.4 19 0.00067 32.1 1.2 16 35-50 125-140 (331)
289 1ukz_A Uridylate kinase; trans 27.3 16 0.00055 28.8 0.5 17 34-50 16-32 (203)
290 1zd8_A GTP:AMP phosphotransfer 27.3 16 0.00053 29.6 0.5 16 35-50 9-24 (227)
291 2c95_A Adenylate kinase 1; tra 27.2 16 0.00054 28.3 0.5 16 35-50 11-26 (196)
292 1c9k_A COBU, adenosylcobinamid 27.1 17 0.00059 29.4 0.7 14 36-49 2-15 (180)
293 1g41_A Heat shock protein HSLU 27.0 16 0.00054 33.9 0.5 17 34-50 51-67 (444)
294 2oca_A DAR protein, ATP-depend 27.0 20 0.0007 32.6 1.3 25 25-51 122-146 (510)
295 1aky_A Adenylate kinase; ATP:A 26.8 16 0.00056 29.3 0.5 16 35-50 6-21 (220)
296 1sq5_A Pantothenate kinase; P- 26.7 35 0.0012 29.3 2.7 17 34-50 81-97 (308)
297 3fb4_A Adenylate kinase; psych 26.7 17 0.00057 29.0 0.5 15 36-50 3-17 (216)
298 2gno_A DNA polymerase III, gam 26.7 30 0.001 30.0 2.2 30 21-50 6-35 (305)
299 2z43_A DNA repair and recombin 26.5 29 0.00099 30.0 2.1 28 23-50 94-124 (324)
300 1xx6_A Thymidine kinase; NESG, 26.4 12 0.00041 30.4 -0.4 17 35-51 10-26 (191)
301 2pcj_A ABC transporter, lipopr 26.2 14 0.00049 30.4 0.1 14 37-50 34-47 (224)
302 3fvq_A Fe(3+) IONS import ATP- 26.0 15 0.0005 33.1 0.1 15 36-50 33-47 (359)
303 2eyq_A TRCF, transcription-rep 26.0 42 0.0014 34.7 3.5 29 21-49 612-640 (1151)
304 2if2_A Dephospho-COA kinase; a 26.0 17 0.00058 28.6 0.5 15 36-50 4-18 (204)
305 4ddu_A Reverse gyrase; topoiso 26.0 29 0.001 35.7 2.3 24 24-49 86-109 (1104)
306 1j8m_F SRP54, signal recogniti 25.8 46 0.0016 28.7 3.3 17 35-51 100-116 (297)
307 3a4m_A L-seryl-tRNA(SEC) kinas 25.7 19 0.00065 30.0 0.8 17 34-50 5-21 (260)
308 2jaq_A Deoxyguanosine kinase; 25.6 18 0.00061 28.1 0.5 14 36-49 3-16 (205)
309 3crv_A XPD/RAD3 related DNA he 25.6 42 0.0014 31.3 3.2 28 22-51 13-40 (551)
310 1zuh_A Shikimate kinase; alpha 25.4 20 0.00068 27.3 0.8 15 35-49 9-23 (168)
311 2ged_A SR-beta, signal recogni 25.4 16 0.00054 28.2 0.1 19 32-50 47-65 (193)
312 2zj8_A DNA helicase, putative 25.3 18 0.00063 34.8 0.6 21 28-50 36-56 (720)
313 2zr9_A Protein RECA, recombina 25.3 29 0.00099 30.7 1.9 29 22-50 46-78 (349)
314 2qmh_A HPR kinase/phosphorylas 25.2 20 0.00068 29.9 0.8 19 32-50 33-51 (205)
315 1x88_A Kinesin-like protein KI 25.2 11 0.00038 33.9 -0.9 33 196-228 282-314 (359)
316 1cke_A CK, MSSA, protein (cyti 25.2 20 0.00068 28.6 0.8 16 35-50 7-22 (227)
317 3dl0_A Adenylate kinase; phosp 25.2 18 0.00063 28.8 0.5 15 36-50 3-17 (216)
318 3a8t_A Adenylate isopentenyltr 25.2 21 0.00073 31.9 1.0 15 35-49 42-56 (339)
319 3rlf_A Maltose/maltodextrin im 25.0 16 0.00055 33.2 0.1 16 36-51 32-47 (381)
320 2yyz_A Sugar ABC transporter, 24.9 16 0.00055 32.8 0.1 16 36-51 32-47 (359)
321 3crm_A TRNA delta(2)-isopenten 24.9 22 0.00074 31.6 1.0 16 34-49 6-21 (323)
322 1ak2_A Adenylate kinase isoenz 24.8 19 0.00064 29.4 0.5 17 34-50 17-33 (233)
323 2iut_A DNA translocase FTSK; n 24.7 15 0.00052 35.3 -0.1 18 34-51 215-232 (574)
324 2plr_A DTMP kinase, probable t 24.7 19 0.00065 28.1 0.5 16 35-50 6-21 (213)
325 2cdn_A Adenylate kinase; phosp 24.7 21 0.00071 28.1 0.8 20 31-50 18-37 (201)
326 3auy_A DNA double-strand break 24.7 25 0.00084 31.1 1.3 17 34-50 26-42 (371)
327 2onk_A Molybdate/tungstate ABC 24.6 16 0.00056 30.5 0.1 15 36-50 27-41 (240)
328 3qks_A DNA double-strand break 24.6 26 0.00089 28.2 1.4 17 34-50 24-40 (203)
329 3gfo_A Cobalt import ATP-bindi 24.6 17 0.00057 31.3 0.1 15 37-51 38-52 (275)
330 1ji0_A ABC transporter; ATP bi 24.5 17 0.00057 30.3 0.1 16 36-51 35-50 (240)
331 3aez_A Pantothenate kinase; tr 24.5 16 0.00056 31.8 0.1 17 34-50 91-107 (312)
332 1pjr_A PCRA; DNA repair, DNA r 24.5 16 0.00056 35.5 0.1 20 32-51 23-42 (724)
333 1zu4_A FTSY; GTPase, signal re 24.4 17 0.00057 32.0 0.1 17 35-51 107-123 (320)
334 1z47_A CYSA, putative ABC-tran 24.4 17 0.00057 32.7 0.1 16 36-51 44-59 (355)
335 1g6h_A High-affinity branched- 24.4 17 0.00057 30.6 0.1 16 36-51 36-51 (257)
336 1zak_A Adenylate kinase; ATP:A 24.3 19 0.00065 28.9 0.5 16 35-50 7-22 (222)
337 1w4r_A Thymidine kinase; type 24.2 27 0.00093 28.7 1.4 24 24-47 11-34 (195)
338 3l9o_A ATP-dependent RNA helic 24.2 29 0.001 35.8 1.9 23 25-49 193-215 (1108)
339 2cbz_A Multidrug resistance-as 24.1 17 0.00058 30.2 0.1 15 36-50 34-48 (237)
340 1g29_1 MALK, maltose transport 24.1 17 0.00058 32.7 0.1 16 36-51 32-47 (372)
341 1b0u_A Histidine permease; ABC 24.0 17 0.00059 30.7 0.1 14 37-50 36-49 (262)
342 2it1_A 362AA long hypothetical 24.0 17 0.00059 32.6 0.1 16 36-51 32-47 (362)
343 1jjv_A Dephospho-COA kinase; P 24.0 22 0.00074 28.1 0.7 15 36-50 5-19 (206)
344 1sgw_A Putative ABC transporte 23.9 16 0.00054 30.1 -0.1 14 37-50 39-52 (214)
345 2pbr_A DTMP kinase, thymidylat 23.8 20 0.00069 27.6 0.5 15 36-50 3-17 (195)
346 1zj6_A ADP-ribosylation factor 23.8 57 0.0019 24.8 3.2 23 28-50 11-33 (187)
347 2v9p_A Replication protein E1; 23.6 18 0.00061 31.7 0.2 17 34-50 127-143 (305)
348 2yz2_A Putative ABC transporte 23.6 18 0.0006 30.7 0.1 16 36-51 36-51 (266)
349 3foz_A TRNA delta(2)-isopenten 23.6 22 0.00075 31.6 0.8 16 34-49 11-26 (316)
350 2ius_A DNA translocase FTSK; n 23.6 16 0.00056 34.5 -0.1 17 34-50 168-184 (512)
351 2ce2_X GTPase HRAS; signaling 23.5 23 0.00077 25.9 0.7 16 35-50 5-20 (166)
352 1nlf_A Regulatory protein REPA 23.5 24 0.00082 29.6 1.0 17 34-50 31-47 (279)
353 2ff7_A Alpha-hemolysin translo 23.3 18 0.00062 30.3 0.1 16 36-51 38-53 (247)
354 3exa_A TRNA delta(2)-isopenten 23.1 23 0.00078 31.6 0.8 16 35-50 5-20 (322)
355 2xgj_A ATP-dependent RNA helic 23.1 30 0.001 35.3 1.8 22 27-50 97-118 (1010)
356 1v43_A Sugar-binding transport 23.0 18 0.00063 32.6 0.1 16 36-51 40-55 (372)
357 2vl7_A XPD; helicase, unknown 23.0 49 0.0017 30.8 3.1 27 23-51 18-44 (540)
358 3sr0_A Adenylate kinase; phosp 23.0 21 0.00073 29.1 0.5 35 36-73 3-37 (206)
359 2nr8_A Kinesin-like protein KI 22.9 12 0.00042 33.7 -1.1 33 196-228 289-322 (358)
360 1mv5_A LMRA, multidrug resista 22.8 19 0.00064 30.0 0.1 15 36-50 31-45 (243)
361 2dyk_A GTP-binding protein; GT 22.8 24 0.00083 25.8 0.8 16 35-50 3-18 (161)
362 2ghi_A Transport protein; mult 22.8 19 0.00064 30.5 0.1 15 36-50 49-63 (260)
363 2z0h_A DTMP kinase, thymidylat 22.7 22 0.00075 27.5 0.5 15 36-50 3-17 (197)
364 2olj_A Amino acid ABC transpor 22.6 19 0.00065 30.6 0.1 15 36-50 53-67 (263)
365 1xjc_A MOBB protein homolog; s 22.6 19 0.00065 28.8 0.1 15 36-50 7-21 (169)
366 3umf_A Adenylate kinase; rossm 22.6 22 0.00074 29.5 0.5 36 35-73 31-66 (217)
367 4g1u_C Hemin import ATP-bindin 22.6 19 0.00065 30.6 0.1 15 37-51 41-55 (266)
368 1ltq_A Polynucleotide kinase; 22.4 24 0.00082 29.6 0.8 16 35-50 4-19 (301)
369 2pez_A Bifunctional 3'-phospho 22.3 28 0.00096 26.8 1.1 16 35-50 7-22 (179)
370 2w00_A HSDR, R.ECOR124I; ATP-b 22.3 20 0.00068 36.9 0.2 16 36-51 303-318 (1038)
371 3tqc_A Pantothenate kinase; bi 22.3 42 0.0014 29.5 2.4 16 35-50 94-109 (321)
372 1vpl_A ABC transporter, ATP-bi 22.2 20 0.00067 30.4 0.1 16 36-51 44-59 (256)
373 1e4v_A Adenylate kinase; trans 22.2 22 0.00076 28.4 0.5 15 36-50 3-17 (214)
374 1ex7_A Guanylate kinase; subst 22.1 25 0.00086 28.4 0.8 15 36-50 4-18 (186)
375 2zts_A Putative uncharacterize 22.1 27 0.00094 27.9 1.0 26 25-50 19-47 (251)
376 2pze_A Cystic fibrosis transme 22.0 20 0.00068 29.6 0.1 14 37-50 38-51 (229)
377 2qt1_A Nicotinamide riboside k 22.0 23 0.00077 28.0 0.5 16 35-50 23-38 (207)
378 2nq2_C Hypothetical ABC transp 21.8 21 0.0007 30.1 0.2 16 36-51 34-49 (253)
379 3qf7_A RAD50; ABC-ATPase, ATPa 21.8 31 0.0011 30.6 1.4 15 36-50 26-40 (365)
380 2zu0_C Probable ATP-dependent 21.7 20 0.0007 30.4 0.1 15 36-50 49-63 (267)
381 2d2e_A SUFC protein; ABC-ATPas 21.6 20 0.0007 29.9 0.1 15 36-50 32-46 (250)
382 4a15_A XPD helicase, ATP-depen 21.5 50 0.0017 31.6 2.9 25 24-50 15-39 (620)
383 3be4_A Adenylate kinase; malar 21.4 24 0.00081 28.4 0.5 16 35-50 7-22 (217)
384 3cf2_A TER ATPase, transitiona 21.4 19 0.00066 35.9 -0.1 44 35-78 513-570 (806)
385 2pjz_A Hypothetical protein ST 21.3 21 0.00072 30.4 0.1 15 36-50 33-47 (263)
386 3u4q_A ATP-dependent helicase/ 21.3 21 0.0007 37.2 0.1 19 33-51 23-41 (1232)
387 2ihy_A ABC transporter, ATP-bi 21.2 21 0.00072 30.6 0.1 16 36-51 50-65 (279)
388 2ixe_A Antigen peptide transpo 21.2 21 0.00072 30.4 0.1 16 36-51 48-63 (271)
389 2v3c_C SRP54, signal recogniti 21.2 23 0.00079 32.5 0.4 17 35-51 101-117 (432)
390 1z2a_A RAS-related protein RAB 21.1 27 0.00094 25.7 0.8 17 34-50 6-22 (168)
391 3o8b_A HCV NS3 protease/helica 21.1 34 0.0012 33.4 1.6 17 35-51 234-250 (666)
392 3d31_A Sulfate/molybdate ABC t 21.1 15 0.00052 32.7 -0.8 16 36-51 29-44 (348)
393 2qi9_C Vitamin B12 import ATP- 21.0 22 0.00074 30.0 0.1 16 36-51 29-44 (249)
394 1cr0_A DNA primase/helicase; R 20.8 21 0.00073 30.0 0.1 28 24-51 24-53 (296)
395 3f9v_A Minichromosome maintena 20.7 28 0.00097 33.2 0.9 16 35-50 329-344 (595)
396 2f9l_A RAB11B, member RAS onco 20.6 20 0.00069 28.0 -0.1 17 34-50 6-22 (199)
397 2va8_A SSO2462, SKI2-type heli 20.6 25 0.00086 33.7 0.6 20 29-50 44-63 (715)
398 3ney_A 55 kDa erythrocyte memb 20.5 31 0.0011 28.2 1.0 16 35-50 21-36 (197)
399 1vht_A Dephospho-COA kinase; s 20.5 28 0.00095 27.7 0.7 15 35-49 6-20 (218)
400 3gd7_A Fusion complex of cysti 20.5 22 0.00075 32.3 0.1 15 36-50 50-64 (390)
401 1e69_A Chromosome segregation 20.4 32 0.0011 29.7 1.2 16 35-50 26-41 (322)
402 2jeo_A Uridine-cytidine kinase 20.3 23 0.00077 29.1 0.1 15 36-50 28-42 (245)
403 2wwf_A Thymidilate kinase, put 20.3 26 0.00088 27.5 0.5 16 35-50 12-27 (212)
404 3hr8_A Protein RECA; alpha and 20.2 38 0.0013 30.3 1.6 30 21-50 45-78 (356)
405 1np6_A Molybdopterin-guanine d 20.2 23 0.00078 28.2 0.1 15 36-50 9-23 (174)
406 1u8z_A RAS-related protein RAL 20.2 30 0.001 25.3 0.8 16 35-50 6-21 (168)
407 3tlx_A Adenylate kinase 2; str 20.1 26 0.00091 28.9 0.5 18 33-50 29-46 (243)
408 2xb4_A Adenylate kinase; ATP-b 20.1 26 0.0009 28.3 0.5 15 36-50 3-17 (223)
409 1m7g_A Adenylylsulfate kinase; 20.0 29 0.001 27.6 0.8 17 34-50 26-42 (211)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=3.6e-52 Score=384.75 Aligned_cols=209 Identities=20% Similarity=0.277 Sum_probs=166.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|...++..+|||||++++||+.+.....
T Consensus 52 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~ 131 (365)
T 2y65_A 52 VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEV 131 (365)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCS
T ss_pred EEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccC
Confidence 499999999 9999999999999999999999999999999999999999999887767899999999999999987543
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
++.|.|.+||+||| ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+.
T Consensus 132 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~ 207 (365)
T 2y65_A 132 --NLEFHIKVSYYEIY--MDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEH 207 (365)
T ss_dssp --CEEEEEEEEEEEEE--TTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred --CceEEEEEEEEEEE--CCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCC
Confidence 57999999999999 9999999999888899999999999999999999999999999999 999999999999999
Q ss_pred Cch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| |++..++.....+ .. ..|-|.. +|||||||+.+++ ..+.|+.|...||+||+
T Consensus 208 SSRSH~if~i~v~~~~~~~~--~~-------~~skL~l--VDLAGSEr~~~t~-----~~g~rl~E~~~INkSL~ 266 (365)
T 2y65_A 208 SSRSHSVFLINVKQENLENQ--KK-------LSGKLYL--VDLAGSEKVSKTG-----AEGTVLDEAKNINKSLS 266 (365)
T ss_dssp HHTSEEEEEEEEEEEETTTC--CE-------EEEEEEE--EECCCCCC---------------------CCHHHH
T ss_pred CCCceEEEEEEEEEEecCCC--CE-------eEEEEEE--EECCCCCcchhcC-----CcchhHHHHHHHHHHHH
Confidence 999 4444333322111 00 0011222 6999999987764 34556666666666654
No 2
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1e-51 Score=376.56 Aligned_cols=216 Identities=20% Similarity=0.275 Sum_probs=180.2
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+..++..+|||||++++||+.+.....
T Consensus 45 ~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~ 124 (325)
T 1bg2_A 45 PYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDE 124 (325)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCS
T ss_pred EEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccC
Confidence 499999999 9999999999999999999999999999999999999999999987777889999999999999987543
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
++.|.|.+||+||| ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+.
T Consensus 125 --~~~~~v~vS~~EIY--nE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 200 (325)
T 1bg2_A 125 --NLEFHIKVSYFEIY--LDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEH 200 (325)
T ss_dssp --SEEEEEEEEEEEEE--TTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHH
T ss_pred --CceEEEEEEEEEEe--cCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCC
Confidence 47999999999999 9999999999888899999999999999999999999999999999 999999999999999
Q ss_pred Cch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852 159 SSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 159 SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 228 (241)
||| ++++...+.......... ..|-|.. +|||||||+.+++ ++++..+|.+|..|++.=.+|
T Consensus 201 SSRSH~if~i~v~~~~~~~~~~------~~skl~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL 268 (325)
T 1bg2_A 201 SSRSHSIFLINVKQENTQTEQK------LSGKLYL--VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL 268 (325)
T ss_dssp HHHSEEEEEEEEEEEETTTCCE------EEEEEEE--EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEEEecCCCcE------EEEEEEE--EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 999 443333332111100000 0111222 6999999987763 456667777777776655554
No 3
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.6e-51 Score=386.29 Aligned_cols=212 Identities=25% Similarity=0.330 Sum_probs=163.2
Q ss_pred CeecceecC-C-------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHH
Q psy9852 1 MFAFDAIFS-D-------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFR 72 (241)
Q Consensus 1 tF~FD~VF~-~-------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~ 72 (241)
+|+||+||+ + ++|++||+.++.|+|+++++|||+||||||||||||||||+|.+. ++|||||++++||+
T Consensus 97 ~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~---~~GIipr~~~~lF~ 173 (443)
T 2owm_A 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPD---QPGLIPRTCEDLFQ 173 (443)
T ss_dssp EEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTT---SCCHHHHHHHHHHH
T ss_pred eEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCC---CCchHHHHHHHHHH
Confidence 499999997 4 899999999999999999999999999999999999999999875 58999999999999
Q ss_pred HHHhccc-CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852 73 CISEQKH-KTGARFSVRASAIEISSSSQHVKDLLSTYS-----NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TL 145 (241)
Q Consensus 73 ~i~~~~~-~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~ 145 (241)
.++.... ..++.|.|.|||+||| ||+|+|||++.. ..+.+++++.++++|+|++++.|.+++|++++|+ |.
T Consensus 174 ~i~~~~~~~~~~~~~V~vS~lEIY--nE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~ 251 (443)
T 2owm_A 174 RIASAQDETPNISYNVKVSYFEVY--NEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGD 251 (443)
T ss_dssp HHHHTTTTSTTCEEEEEEEEEEEE--TTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHH
T ss_pred HHHhhhcccCCceEEEEEEEEEEE--CCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHH
Confidence 9987643 2467999999999999 999999998732 3478999999999999999999999999999999 99
Q ss_pred cCCCccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHH
Q psy9852 146 SRDSLISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQL 221 (241)
Q Consensus 146 ~~R~~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 221 (241)
++|++++|.||+.||| |++..++.......+... .+ -|-|.. +|||||||+.+++ ..++|+.|.
T Consensus 252 ~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~-~~----~skL~l--VDLAGSER~~~t~-----~~g~rlkE~ 319 (443)
T 2owm_A 252 GSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTT-ER----SSRIRL--VDLAGSERAKSTE-----ATGQRLREG 319 (443)
T ss_dssp TTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CC-EE----EEEEEE--EECCCCCC-------------------
T ss_pred hhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcc-eE----EEEEEE--EECCCCccccccC-----Cccccccch
Confidence 9999999999999999 665555543222111110 01 011222 6999999987763 345555555
Q ss_pred HHhhHHHH
Q psy9852 222 KREKRALL 229 (241)
Q Consensus 222 ~~~~~~~~ 229 (241)
..||+||+
T Consensus 320 ~~INkSL~ 327 (443)
T 2owm_A 320 SNINKSLT 327 (443)
T ss_dssp CCSSHHHH
T ss_pred hhhcHHHH
Confidence 55555554
No 4
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=3e-51 Score=378.81 Aligned_cols=213 Identities=22% Similarity=0.291 Sum_probs=173.4
Q ss_pred CeecceecC-C--------CChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHH
Q psy9852 1 MFAFDAIFS-D--------EPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF 71 (241)
Q Consensus 1 tF~FD~VF~-~--------a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF 71 (241)
+|+||+||+ + ++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+ .++|||||++++||
T Consensus 49 ~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~-~~~Giipr~~~~lF 127 (366)
T 2zfi_A 49 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-DQQGIIPQLCEDLF 127 (366)
T ss_dssp EEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGG-GCBCHHHHHHHHHH
T ss_pred EEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCcc-CCCccHHHHHHHHH
Confidence 499999998 7 8999999999999999999999999999999999999999998642 36899999999999
Q ss_pred HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCC
Q psy9852 72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDS 149 (241)
Q Consensus 72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~ 149 (241)
+.++.... .++.|.|.|||+||| ||+|+|||++.. ..+.+++++..+++|+|++++.|.+++|++++|+ |.++|+
T Consensus 128 ~~i~~~~~-~~~~~~v~vS~~EIY--nE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~ 204 (366)
T 2zfi_A 128 SRINDTTN-DNMSYSVEVSYMEIY--CERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRT 204 (366)
T ss_dssp HHHHTCCC-TTEEEEEEEEEEEEE--TTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHT
T ss_pred HHHhhccc-CCeeEEEEEEEEEee--CCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccc
Confidence 99987644 357999999999999 999999998875 4678999999999999999999999999999999 999999
Q ss_pred ccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhh
Q psy9852 150 LISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK 225 (241)
Q Consensus 150 ~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (241)
+++|.||+.||| |++..++...+...+. ...+ -|-|.. +|||||||+.+++ ..++|+.|...||
T Consensus 205 ~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~-~~~~----~skL~l--VDLAGSEr~~~t~-----~~g~rl~E~~~IN 272 (366)
T 2zfi_A 205 VAATNMNETSSRSHAVFNIIFTQKRHDAETNI-TTEK----VSKISL--VDLAGSERADSTG-----AKGTRLKEGANIN 272 (366)
T ss_dssp SGGGGTTTHHHHSEEEEEEEEEEEEECTTTTC-EEEE----EEEEEE--EECCCGGGC-----------CCCHHHHHHHH
T ss_pred cccccCCCCCCcceEEEEEEEEEecccCCCCc-ccee----EeEEEE--EeCCCCccccccC-----CCccchhhhhhHh
Confidence 999999999999 5554444332222111 0001 011222 6999999987753 5677788888888
Q ss_pred HHHH
Q psy9852 226 RALL 229 (241)
Q Consensus 226 ~~~~ 229 (241)
+||+
T Consensus 273 kSL~ 276 (366)
T 2zfi_A 273 KSLT 276 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 5
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.9e-51 Score=375.50 Aligned_cols=205 Identities=20% Similarity=0.263 Sum_probs=156.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.++....
T Consensus 73 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lf~~i~~~~~ 149 (355)
T 3lre_A 73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD---EPGVMYLTMLHLYKCMDEIKE 149 (355)
T ss_dssp EEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTT
T ss_pred eEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCC---CCCeeehhhhHHHHhhhhhcc
Confidence 399999999 9999999999999999999999999999999999999999999876 589999999999999998654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
...+.|.|||+||| ||+|+|||++. ..+.+++++.++++|+|++++.|.+++|+.++|+ |.++|++++|.||+.
T Consensus 150 --~~~~~v~vS~~EIY--nE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 224 (355)
T 3lre_A 150 --EKICSTAVSYLEVY--NEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNAT 224 (355)
T ss_dssp --TEEEEEEEEEEEEE--TTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CB
T ss_pred --CceEEEEEEEEEEE--CCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCC
Confidence 36899999999999 99999999875 4588999999999999999999999999999999 999999999999999
Q ss_pred Cch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| |++..++.......+. .++.+| +|||||||+.+++ ..+.|+.|...||+||+
T Consensus 225 SSRSH~if~i~v~~~~~~~~~~~-----------~~~~skl~lVDLAGSEr~~~t~-----~~g~rl~E~~~INkSL~ 286 (355)
T 3lre_A 225 SSRSHAVFQIYLRQQDKTASINQ-----------NVRIAKMSLIDLAGSERASTSG-----AKGTRFVEGTNINRSLL 286 (355)
T ss_dssp CTTCEEEEEEEEEEEETTSCTTC-----------CCCCEEEEEEECCCCCC----------------------CHHHH
T ss_pred CCCCcEEEEEEEEEecCCCCCCC-----------CEEEEEEEEEECCCCCcCcCCC-----CccHHHHHHHHHHHHHH
Confidence 999 4444444322211111 112233 5999999987764 45666666777777664
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-51 Score=379.95 Aligned_cols=212 Identities=22% Similarity=0.271 Sum_probs=157.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|+||+||+ +++|++||+..+.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.++....
T Consensus 66 ~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~---~~Giipra~~~lF~~i~~~~~ 142 (388)
T 3bfn_A 66 KYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE---QPGVIPRALMDLLQLTREEGA 142 (388)
T ss_dssp EEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCcc---ccchhHHHHHHHHHHHHHhhc
Confidence 499999999 9999999999999999999999999999999999999999999876 589999999999999987432
Q ss_pred -CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852 80 -KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND 157 (241)
Q Consensus 80 -~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~ 157 (241)
...+.|.|.|||+||| ||+|+|||++....+.+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.||+
T Consensus 143 ~~~~~~~~V~vS~lEIY--nE~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~ 220 (388)
T 3bfn_A 143 EGRPWALSVTMSYLEIY--QEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQ 220 (388)
T ss_dssp TTCSEEEEEEEEEEEEE--TTEEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------
T ss_pred cCCCceEEEEEEEEEEE--CCeeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCC
Confidence 2357899999999999 9999999999888899999999999999999999999999999999 99999999999999
Q ss_pred CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHH
Q psy9852 158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRA 227 (241)
Q Consensus 158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 227 (241)
.||| |++..++........ . + .|-|.. +|||||||+.+++ +.++..+|.+|..|++.=.+
T Consensus 221 ~SSRSH~If~i~v~~~~~~~~~~--~--~----~skL~l--VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~a 289 (388)
T 3bfn_A 221 RSSRSHAVLLVKVDQRERLAPFR--Q--R----EGKLYL--IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDA 289 (388)
T ss_dssp CGGGSEEEEEEEEEEEESSTTCC--E--E----EEEEEE--EECCCTTC--------------CCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEEEEeccCCCCc--e--e----EEEEEE--EECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHH
Confidence 9999 444444332211100 0 0 011222 6999999987763 34444555555555444333
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-50 Score=370.51 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=175.3
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.++...
T Consensus 45 ~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~- 120 (349)
T 1t5c_A 45 SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFP- 120 (349)
T ss_dssp EEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHGGGCT-
T ss_pred EEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCC---CCchHHHHHHHHHHHHHhCc-
Confidence 499999999 9999999999999999999999999999999999999999999875 58999999999999998753
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN 156 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N 156 (241)
+..|.|.|||+||| ||+|+|||++.. +.+.+++++.++++|+|++++.|.+++|++++|. |.++|++++|.||
T Consensus 121 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 196 (349)
T 1t5c_A 121 --DREFLLRVSYMEIY--NETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMN 196 (349)
T ss_dssp --TEEEEEEEEEEEEE--TTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred --CCcEEEEEEEEEEe--CCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCC
Confidence 46999999999999 999999998764 4578899999999999999999999999999999 9999999999999
Q ss_pred CCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhc-----cccccccchhhHHHHHHhhHH
Q psy9852 157 DNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-----DFNQSTWRNDRLEQLKREKRA 227 (241)
Q Consensus 157 ~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 227 (241)
+.||| |++..++.............+ -|-|. =+|||||||+.++ .+.++..+|.+|..|++.=++
T Consensus 197 ~~SSRSH~if~i~v~~~~~~~~~~~~~~~~----~skL~--lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~a 270 (349)
T 1t5c_A 197 QRSSRSHTIFRMILESREKGEPSNCEGSVK----VSHLN--LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKK 270 (349)
T ss_dssp CTTTTCEEEEEEEEEEEECC-------CEE----EEEEE--EEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEEEEeccCCCcCcCccEE----EEEEE--EEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHH
Confidence 99999 555545443222111000000 01122 2699999998775 356777777777777776555
Q ss_pred H
Q psy9852 228 L 228 (241)
Q Consensus 228 ~ 228 (241)
|
T Consensus 271 L 271 (349)
T 1t5c_A 271 L 271 (349)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=5e-51 Score=375.29 Aligned_cols=204 Identities=21% Similarity=0.291 Sum_probs=150.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.++...
T Consensus 57 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~- 132 (350)
T 2vvg_A 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE---EPGAIPNSFKHLFDAINSSS- 132 (350)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTCC-
T ss_pred EeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCc---cCchHHHHHHHHHHHHHhhc-
Confidence 499999999 9999999999999999999999999999999999999999999985 58999999999999998643
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRNDN 158 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~~ 158 (241)
.++.|.|.+||+||| ||+|+|||++ ...+.+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.||+.
T Consensus 133 -~~~~~~v~vS~~EIY--nE~i~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 208 (350)
T 2vvg_A 133 -SNQNFLVIGSYLELY--NEEIRDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDT 208 (350)
T ss_dssp -TTEEEEEEEEEEEEE--TTEEEETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------
T ss_pred -cCCcEEEEEEEEEEe--CCEEEEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCC
Confidence 347999999999999 9999999974 44578899999999999999999999999999999 999999999999999
Q ss_pred Cch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 159 SSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 159 SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
||| |++..++.....+.. .++.+| +|||||||+.+++ ..++|+.|...||+||+
T Consensus 209 SSRSH~if~i~v~~~~~~~~~~------------~~~~skl~lVDLAGSEr~~~t~-----~~g~rl~E~~~IN~SL~ 269 (350)
T 2vvg_A 209 SSRSHSIFMVRIECSEVIENKE------------VIRVGKLNLVDLAGSERQSKTG-----ATGETLVEGAKINLSLS 269 (350)
T ss_dssp CTTCEEEEEEEEEEEEC----C------------EEEEEEEEEEECCCCCC--------------------CTTHHHH
T ss_pred CCcceEEEEEEEEEeeccCCCc------------cEEEEEEEEEeCCCCCcccccc-----ccHHHHHHHHHHhHHHH
Confidence 999 444433332111110 012233 6999999988763 34555666666666654
No 9
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=8.3e-51 Score=374.49 Aligned_cols=213 Identities=22% Similarity=0.309 Sum_probs=174.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-CCCCCCchHHHHHHHHHHHHhcc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-SSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
+|.||+||+ +++|++||+..+.|+|+++++|||+||||||||||||||||+|++. ++..+|||||++++||+.+....
T Consensus 48 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~ 127 (355)
T 1goj_A 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSA 127 (355)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSC
T ss_pred EEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcc
Confidence 499999999 9999999999999999999999999999999999999999999753 24578999999999999998754
Q ss_pred cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852 79 HKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND 157 (241)
Q Consensus 79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~ 157 (241)
. ++.|.|.+||+||| ||+|+|||++....+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+
T Consensus 128 ~--~~~~~v~vS~~EIY--nE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 203 (355)
T 1goj_A 128 A--NIEYTVRVSYMEIY--MERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQ 203 (355)
T ss_dssp T--TEEEEEEEEEEEEE--TTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred c--CceEEEEEEEEEEE--CCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCC
Confidence 3 47999999999999 9999999999988899999999999999999999999999999999 99999999999999
Q ss_pred CCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHH
Q psy9852 158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 228 (241)
.||| |++..++...+. +.. + .|-|.. +|||||||+.+++ +.++..+|.+|..|++.=++|
T Consensus 204 ~SSRSH~if~i~v~~~~~~~--~~~---~----~skL~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL 272 (355)
T 1goj_A 204 ESSRSHSIFVITITQKNVET--GSA---K----SGQLFL--VDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL 272 (355)
T ss_dssp CGGGCEEEEEEEEEEEETTT--TEE---E----EEEEEE--EECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEeccCC--Cce---e----eeEEEE--EECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHH
Confidence 9999 444433332211 111 0 011222 6999999987753 344445555555555444433
No 10
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=7.9e-51 Score=376.48 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=171.0
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|...++.++|||||++++||+.++..
T Consensus 69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~-- 146 (372)
T 3b6u_A 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-- 146 (372)
T ss_dssp EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC--
T ss_pred EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhc--
Confidence 499999999 99999999999999999999999999999999999999999998876668899999999999999874
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRND 157 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N~ 157 (241)
.++.|.|.+||+||| ||+|+|||++.. ..+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|.||+
T Consensus 147 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~ 223 (372)
T 3b6u_A 147 -QNQQYLVRASYLEIY--QEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNE 223 (372)
T ss_dssp -SSCEEEEEEEEEEEE--TTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHH
T ss_pred -cCCceEEEEEEEEEe--CCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCC
Confidence 346999999999999 999999998764 5678999999999999999999999999999999 99999999999999
Q ss_pred CCch----hhhhceeeeCCCCCCcccccccccccccccccc---ccchhhhhhhhcc-----ccccccchhhHHHHHHhh
Q psy9852 158 NSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCK---NDLETLEQYCKND-----FNQSTWRNDRLEQLKREK 225 (241)
Q Consensus 158 ~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 225 (241)
.||| |++..++.. ....+.. .++.+| +|||||||+.+++ +.++..+|.+|..|++.=
T Consensus 224 ~SSRSH~If~i~v~~~~-~~~~~~~----------~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI 292 (372)
T 3b6u_A 224 HSSRSHAIFVITIECSE-VGLDGEN----------HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292 (372)
T ss_dssp HHHTSEEEEEEEEEEEC------CC----------CEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHH
T ss_pred CCCcceEEEEEEEEEee-cCCCCCc----------ceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHH
Confidence 9999 444433322 1111110 112233 5999999988764 345555555555555544
Q ss_pred HHH
Q psy9852 226 RAL 228 (241)
Q Consensus 226 ~~~ 228 (241)
.+|
T Consensus 293 ~aL 295 (372)
T 3b6u_A 293 SAL 295 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 11
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-50 Score=368.60 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=167.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.++...
T Consensus 49 ~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~- 123 (330)
T 2h58_A 49 SFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NPGINQRALQLLFSEVQEKA- 123 (330)
T ss_dssp EEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTSC-
T ss_pred EEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCC---CCcHHHHHHHHHHHhhhccc-
Confidence 499999999 9999999996 69999999999999999999999999999999876 58999999999999998654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEE--EccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFR--LCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~--~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
..+.|.|.|||+||| ||+|+|||++.. ..+.++ +++.++++|+|++++.|.+++|++++|+ |.++|++++|.|
T Consensus 124 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 200 (330)
T 2h58_A 124 -SDWEYTITVSAAEIY--NEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNL 200 (330)
T ss_dssp -TTEEEEEEEEEEEEE--TTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCS
T ss_pred -CCceEEEEEEEEEEE--CCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccC
Confidence 347999999999999 999999998754 334455 5778999999999999999999999999 999999999999
Q ss_pred CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
|+.||| |++..++.....+ .. .-|-|.. +|||||||+.++ +..+.|+.|...||+||+
T Consensus 201 N~~SSRSH~if~i~v~~~~~~~~--~~-------~~skL~l--VDLAGSEr~~~t-----~~~g~r~~E~~~IN~SL~ 262 (330)
T 2h58_A 201 NEHSSRSHALLIVTVRGVDCSTG--LR-------TTGKLNL--VDLAGSERVGKS-----GAEGSRLREAQHINKSLS 262 (330)
T ss_dssp CSCGGGSEEEEEEEEEEEETTTT--EE-------EEEEEEE--EECCCCCCCC-----------HHHHHHHHHHHHHH
T ss_pred CCCcCCccEEEEEEEEEEecCCC--cE-------EEEEEEE--EeCCCCCccccc-----CCchhhhHHHHHhhHhHH
Confidence 999999 4444433322111 10 0011222 699999988776 456889999999999986
No 12
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3e-50 Score=372.36 Aligned_cols=205 Identities=20% Similarity=0.263 Sum_probs=174.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++. ++|||||++++||+.++....
T Consensus 48 ~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~ 123 (369)
T 3cob_A 48 QHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRAMSELFRIMKKDSN 123 (369)
T ss_dssp EEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTT
T ss_pred EEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCC---CCchhHHHHHHHHHHHHhhcc
Confidence 499999999 9999999997 79999999999999999999999999999999985 589999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
.+.|.|.+||+||| ||+|+|||++.. ..+.+++++.++++|+|++++.|.++++++++|. |.++|++++|.|
T Consensus 124 --~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 199 (369)
T 3cob_A 124 --KFSFSLKAYMVELY--QDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLM 199 (369)
T ss_dssp --TEEEEEEEEEEEEC--SSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCT
T ss_pred --CceeEEEEEEEEEe--CceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccC
Confidence 37999999999999 999999998753 4578999999999999999999999999999999 999999999999
Q ss_pred CCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 156 NDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 156 N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
|+.||| |++..++..... +.. . -|-|. -+|||||||+.++ +..+.|+.|...||+||+
T Consensus 200 N~~SSRSH~if~i~v~~~~~~~--~~~---~----~skL~--lVDLAGSEr~~~t-----~~~g~rl~E~~~INkSL~ 261 (369)
T 3cob_A 200 NEQSSRSHLIVSVIIESTNLQT--QAI---A----RGKLS--FVDLAGSERVKKS-----GSAGNQLKEAQSINKSLS 261 (369)
T ss_dssp TCHHHHSEEEEEEEEEEEETTT--CCE---E----EEEEE--EEECCCSSCCCCC-----SSCSHHHHHHHHHTHHHH
T ss_pred CCCCCcceEEEEEEEEEecCCC--CcE---E----EEEEE--EEeCCCCCccccc-----CccchhhHHHHHHHHHHH
Confidence 999999 444433332111 111 0 01122 2699999888765 456788999999999885
No 13
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7.4e-50 Score=367.22 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=156.2
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++ +|||||++++||+.++....
T Consensus 53 ~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~-----~Giipr~~~~lF~~i~~~~~ 126 (347)
T 1f9v_A 53 EFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKT 126 (347)
T ss_dssp EEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred EEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCC-----CCchHHHHHHHHHHHHhhhh
Confidence 499999999 9999999997 6799999999999999999999999999999964 59999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCC---------CceEEEc-cCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSN---------GKFFRLC-FLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD 148 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~---------~~~l~~~-~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R 148 (241)
. ++.|.|.|||+||| ||+|+|||++... .+.++++ ..++++|+|++++.|.+++++.++|+ |.++|
T Consensus 127 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 203 (347)
T 1f9v_A 127 K-GWDYKVNCEFIEIY--NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLR 203 (347)
T ss_dssp G-TCEEEEEEEEEEEE--TTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC---
T ss_pred c-CCceEEEEEEEEEE--CCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhcc
Confidence 3 57999999999999 9999999987654 2456665 46789999999999999999999999 99999
Q ss_pred CccccCCCCCCch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhH
Q psy9852 149 SLISNKRNDNSSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKR 226 (241)
Q Consensus 149 ~~~~T~~N~~SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (241)
++++|.||+.||| ++++...+.... ..+.. .. |-|.. +|||||||+.++ +..++|+.|...||+
T Consensus 204 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~------skL~l--VDLAGSEr~~~t-----~~~g~rl~E~~~IN~ 269 (347)
T 1f9v_A 204 STASTASNEHSSASHSIFIIHLSGSNAKTGAH-SY------GTLNL--VDLAGSERINVS-----QVVGDRLRETQNINK 269 (347)
T ss_dssp --------CCGGGSEEEEEEEEEEECC--CCE-EE------EEEEE--EECCCCCCCCGG-----GCCHHHHHHHHHHHH
T ss_pred ceeeccCCCCCCCceEEEEEEEEEecCCCCce-ee------eEEEE--EECCCCcccccc-----ccchhhhHHHHHHhH
Confidence 9999999999999 444333332111 11111 00 01222 699999988665 467899999999999
Q ss_pred HHH
Q psy9852 227 ALL 229 (241)
Q Consensus 227 ~~~ 229 (241)
||+
T Consensus 270 SL~ 272 (347)
T 1f9v_A 270 SLS 272 (347)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.6e-49 Score=364.55 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=153.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC---CCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS---SATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~---~~~~GIipr~~~~LF~~i~~ 76 (241)
.|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|.... ..++|||||++++||+.++.
T Consensus 51 ~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~ 130 (344)
T 4a14_A 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE 130 (344)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccc
Confidence 499999999 99999999999999999999999999999999999999999998532 34789999999999999987
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN 153 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T 153 (241)
.. ...|.|.|||+||| ||+|+|||++.. +.+.+++++.++++|+|++++.|.+++|++++|+ |.++|++++|
T Consensus 131 ~~---~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T 205 (344)
T 4a14_A 131 ND---LLDCLVHVSYLEVY--KEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGAT 205 (344)
T ss_dssp CT---TSEEEEEEEEEEEE--TTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC---
T ss_pred cc---ceeeEEEEehhhhh--HHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcc
Confidence 63 46999999999999 999999998653 4578899999999999999999999999999999 9999999999
Q ss_pred CCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 154 KRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 154 ~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
.||+.||| |++..++....... ....-..-..-|.|.. +|||||||+.+++ ..+.|+.|...||+||+
T Consensus 206 ~~N~~SSRSH~If~i~v~~~~~~~~~-~~~~~~~~~~~skl~l--VDLAGSEr~~~t~-----~~g~rl~E~~~IN~SL~ 277 (344)
T 4a14_A 206 HLNHLSSRSHTVFTVTLEQRGRAPSR-LPRPAPGQLLVSKFHF--VDLAGSERVLKTG-----STGERLKESIQINSSLL 277 (344)
T ss_dssp ---CCGGGSEEEEEEEEEEEC-------------CEEEEEEEE--EECCCCCCC-------------------CCCSHHH
T ss_pred hhhhcccccceEEEEEeeeCCCCccc-CCCccccceeeeeeeE--EecccchhhcccC-----CchhhhhhheeechhHH
Confidence 99999999 44444433211110 0000000000011222 6999999987663 34445555555555543
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-49 Score=366.42 Aligned_cols=211 Identities=22% Similarity=0.293 Sum_probs=151.6
Q ss_pred Ceecceec--------C-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHH
Q psy9852 1 MFAFDAIF--------S-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLF 71 (241)
Q Consensus 1 tF~FD~VF--------~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF 71 (241)
+|.||+|| + .++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||
T Consensus 52 ~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF 128 (354)
T 3gbj_A 52 VFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTAD---QPGLIPRLCSGLF 128 (354)
T ss_dssp EEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHH
T ss_pred EEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCC---CCchhhHHHHHHH
Confidence 49999999 4 5789999999999999999999999999999999999999999876 5899999999999
Q ss_pred HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852 72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD 148 (241)
Q Consensus 72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R 148 (241)
+.++.... .++.|.|.|||+||| ||+|+|||++.. ..+.+++++..+++|+|++++.|.+++|+.++|+ |.++|
T Consensus 129 ~~i~~~~~-~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R 205 (354)
T 3gbj_A 129 ERTQKEEN-EEQSFKVEVSYMEIY--NEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR 205 (354)
T ss_dssp HHHHHHCB-TTEEEEEEEEEEEEE--TTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC
T ss_pred HHHHhhcc-cccceeeeceeEEEe--cCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcC
Confidence 99986544 357899999999999 999999998763 5678899999999999999999999999999999 99999
Q ss_pred CccccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHh
Q psy9852 149 SLISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKRE 224 (241)
Q Consensus 149 ~~~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (241)
++++|.||+.||| |++..++...+...+... .+ .|-|.. +|||||||+.++ +..++|+.|...|
T Consensus 206 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~-~~----~skL~l--VDLAGSEr~~~t-----~~~g~rl~E~~~I 273 (354)
T 3gbj_A 206 TVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG-EK----VGKLSL--VDLAGSERATKT-----GAAGDRLKEGSNI 273 (354)
T ss_dssp ----------CTTSEEEEEEEEEEEEECTTSCEEE-EE----EEEEEE--EECCCCCCCCCC-----C------CHHHHH
T ss_pred CeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC-ee----EEEEEE--EECCCCCchhhc-----CCccccchhHHHh
Confidence 9999999999999 554444332111111110 00 011222 699999987765 4456777777777
Q ss_pred hHHHH
Q psy9852 225 KRALL 229 (241)
Q Consensus 225 ~~~~~ 229 (241)
|+||+
T Consensus 274 N~SL~ 278 (354)
T 3gbj_A 274 NKSLT 278 (354)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77775
No 16
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=368.65 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=150.1
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC-CCCCCCchHHHHHHHHHHHHhcc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ-SSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~-~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
+|+||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|+.. ++..+|||||++++||+.++...
T Consensus 84 ~F~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~ 162 (376)
T 2rep_A 84 DFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELS 162 (376)
T ss_dssp EEECSEEECTTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGG
T ss_pred eeeecEEcCCcccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhh
Confidence 399999999 9999999997 67999999999999999999999999999999865 33578999999999999998765
Q ss_pred cCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----CCceEEEc--cCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCc
Q psy9852 79 HKTGARFSVRASAIEISSSSQHVKDLLSTYS-----NGKFFRLC--FLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSL 150 (241)
Q Consensus 79 ~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----~~~~l~~~--~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~ 150 (241)
.. ++.|.|.+||+||| ||+|+|||++.. ..+.++++ +.++++|+|++++.|.+++|+.++|+ |.++|++
T Consensus 163 ~~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~ 239 (376)
T 2rep_A 163 GQ-GWTYSFVASYVEIY--NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAV 239 (376)
T ss_dssp GG-TEEEEEEEEEEEEE--TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHH
T ss_pred cC-CeEEEEEEEEEEEE--CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhccc
Confidence 43 57999999999999 999999998752 34577887 67899999999999999999999999 9999999
Q ss_pred cccCCCCCCch----hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccch----hhHHHHH
Q psy9852 151 ISNKRNDNSSL----YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRN----DRLEQLK 222 (241)
Q Consensus 151 ~~T~~N~~SSr----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 222 (241)
++|.||+.||| |++..+...... +.. ..|-|.. +|||||||+.+++ ..+ +|+.|..
T Consensus 240 ~~T~~N~~SSRSH~Ifti~v~~~~~~~--~~~-------~~skL~l--VDLAGSEr~~~t~-----~~g~~~~~rlkE~~ 303 (376)
T 2rep_A 240 ARTAQNERSSRSHSVFQLQISGEHSSR--GLQ-------CGAPLSL--VDLAGSERLDPGL-----ALGPGERERLRETQ 303 (376)
T ss_dssp CC-----CGGGSEEEEEEEEEEEESSS--CCE-------EEEEEEE--EECCCCC-------------------------
T ss_pred ccccCCCCCCCceEEEEEEEEEEecCC--CcE-------EEeEEEE--EECCCCccccccc-----ccCccccchhhHHh
Confidence 99999999999 444433332111 110 1111222 6999999987753 223 5555555
Q ss_pred HhhHHHH
Q psy9852 223 REKRALL 229 (241)
Q Consensus 223 ~~~~~~~ 229 (241)
.||+||+
T Consensus 304 ~INkSL~ 310 (376)
T 2rep_A 304 AINSSLS 310 (376)
T ss_dssp ----CHH
T ss_pred HhhHHHH
Confidence 5555553
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=367.05 Aligned_cols=212 Identities=25% Similarity=0.316 Sum_probs=160.6
Q ss_pred CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccC
Q psy9852 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK 80 (241)
Q Consensus 1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~ 80 (241)
+|+||+||++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+..++|||||++++||+.++...
T Consensus 73 ~F~FD~Vf~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~-- 150 (359)
T 3nwn_A 73 SFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-- 150 (359)
T ss_dssp EEECSEEEESCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT--
T ss_pred EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCC--
Confidence 499999999888999999999999999999999999999999999999999998776789999999999999988764
Q ss_pred CCcEEEEEEEEEEEeCCCCeEEEcCCCCC------CCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852 81 TGARFSVRASAIEISSSSQHVKDLLSTYS------NGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN 153 (241)
Q Consensus 81 ~~~~~~V~vS~lEIY~~nE~v~DLL~~~~------~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T 153 (241)
++.|.|.|||+||| ||+|+|||++.. ....+++++ .|+++++++++.|.+++|+.++|. |.++|++++|
T Consensus 151 -~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T 226 (359)
T 3nwn_A 151 -THAITVRVSYLEIY--NESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASH 226 (359)
T ss_dssp -TSCEEEEEEEEEEE--TTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEEEEEEEEe--ccccccccccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccc
Confidence 45899999999999 999999997643 234556555 579999999999999999999999 9999999999
Q ss_pred CCCCCCch-hhhhceeeeC---CCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHh
Q psy9852 154 KRNDNSSL-YSNSNERLHD---PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKRE 224 (241)
Q Consensus 154 ~~N~~SSr-f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 224 (241)
.||..||| ++++...+.. ....+.. . -|-+.. +|||||||+.+++ +.++..+|.+|..|++.
T Consensus 227 ~~N~~SSRSH~if~i~i~~~~~~~~~~~~---~----~skL~l--VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~v 297 (359)
T 3nwn_A 227 TMNKNSSRSHCIFTIYLEAHSRTLSEEKY---I----TSKINL--VDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQA 297 (359)
T ss_dssp HHTCCGGGCEEEEEEEEEEC-------CC---E----EEEEEE--EECCCCC----------------CCSTHHHHHHHH
T ss_pred cCccccCcceEEEEEEEEeecccccCccc---c----ccccee--eeccccccccccCCchhHHHhhhhhcccHHHHHHH
Confidence 99999999 4444333321 1111110 0 011222 6999999987653 34444555555555544
Q ss_pred hHH
Q psy9852 225 KRA 227 (241)
Q Consensus 225 ~~~ 227 (241)
=.+
T Consensus 298 I~a 300 (359)
T 3nwn_A 298 IIA 300 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.3e-49 Score=366.84 Aligned_cols=212 Identities=24% Similarity=0.301 Sum_probs=159.2
Q ss_pred CeecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhcccC
Q psy9852 1 MFAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK 80 (241)
Q Consensus 1 tF~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~~ 80 (241)
+|+||+||++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+...+|||||++++||+.++...
T Consensus 72 ~F~fD~Vf~~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~-- 149 (358)
T 2nr8_A 72 SFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-- 149 (358)
T ss_dssp EEECSEEEESCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT--
T ss_pred EEECCeecCCcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcC--
Confidence 499999999889999999999999999999999999999999999999999998765679999999999999998764
Q ss_pred CCcEEEEEEEEEEEeCCCCeEEEcCCCC------CCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCcccc
Q psy9852 81 TGARFSVRASAIEISSSSQHVKDLLSTY------SNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISN 153 (241)
Q Consensus 81 ~~~~~~V~vS~lEIY~~nE~v~DLL~~~------~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T 153 (241)
.+.|.|.|||+||| ||+|+|||++. ...+.+++++ .|++|+|++++.|.+++|+.++|. |.++|++++|
T Consensus 150 -~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T 225 (358)
T 2nr8_A 150 -THAITVRVSYLEIY--NESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASH 225 (358)
T ss_dssp -TSCEEEEEEEEEEE--TTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -CceEEEEEEEEEEe--CCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccc
Confidence 35899999999999 99999999863 3456788888 789999999999999999999999 9999999999
Q ss_pred CCCCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 154 KRNDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 154 ~~N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
.||+.||| ++++...+............. -|.|.. +|||||||+.+++ ..++|+.|...||+||+
T Consensus 226 ~~N~~SSRSH~If~i~v~~~~~~~~~~~~~----~skL~l--VDLAGSEr~~~t~-----~~g~rl~E~~~INkSL~ 291 (358)
T 2nr8_A 226 TMNKNSSRSHCIFTIYLEAHSRTLSEEKYI----TSKINL--VDLAGSERLGKSG-----SEGQVLKEATYINKSLS 291 (358)
T ss_dssp HHTCCGGGCEEEEEEEEEEC-------CCE----EEEEEE--EECCCCC---------------------CCSTHHH
T ss_pred cCCCCCCcCeEEEEEEEEEEeccCCCCCEE----EEEEEE--EECCCCCcccccC-----CchhhHHHHHHHHHHHH
Confidence 99999999 443333332111000000000 011222 6999999987764 34455555555555543
No 19
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-49 Score=367.41 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=158.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCC--------CCCCCchHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQS--------SATLGVIPSAISWLF 71 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~--------~~~~GIipr~~~~LF 71 (241)
+|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+... ...+|||||++++||
T Consensus 56 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF 135 (359)
T 1x88_A 56 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIF 135 (359)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHH
T ss_pred EEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHH
Confidence 499999999 99999999999999999999999999999999999999999998642 124799999999999
Q ss_pred HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEccC--CcEEecCcEEEeCCCHHHHHHHHH-Hh
Q psy9852 72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCFL--KRFHAEEDEEMPCPVPPPLHSNLL-TL 145 (241)
Q Consensus 72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~~--~g~~v~glt~v~V~s~~d~~~ll~-g~ 145 (241)
+.++.. ++.|.|.|||+||| ||+|+|||++.. ..+.+++++. ++++|+|++++.|.+++|++++|+ |.
T Consensus 136 ~~i~~~----~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~ 209 (359)
T 1x88_A 136 EKLTDN----GTEFSVKVSLLEIY--NEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGA 209 (359)
T ss_dssp HHTSSS----SEEEEEEEEEEEEE--TTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHH
T ss_pred HHHhcc----CceEEEEEEEEEEe--CceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHH
Confidence 988652 47999999999999 999999998865 3568888874 789999999999999999999999 99
Q ss_pred cCCCccccCCCCCCch-hhhhceeeeC--CCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHH
Q psy9852 146 SRDSLISNKRNDNSSL-YSNSNERLHD--PGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLK 222 (241)
Q Consensus 146 ~~R~~~~T~~N~~SSr-f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (241)
++|++++|.||+.||| ++++...++. ....|.. ..+ -|-|. =+|||||||+.+++ ..++|+.|..
T Consensus 210 ~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~-~~~----~skL~--lVDLAGSEr~~~t~-----~~g~rl~E~~ 277 (359)
T 1x88_A 210 AKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE-LVK----IGKLN--LVDLAGSENIGRSG-----AVDKRAREAG 277 (359)
T ss_dssp HHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCE-EEE----EEEEE--EEECCCCCC--------------------
T ss_pred hhcccccccCCCCCCCccEEEEEEEEEecccCCCCc-eEE----EEEEE--EEcCCCCCcccccC-----CcccchHHHh
Confidence 9999999999999999 4443333321 1111110 000 01122 26999999987763 3445555555
Q ss_pred HhhHHHH
Q psy9852 223 REKRALL 229 (241)
Q Consensus 223 ~~~~~~~ 229 (241)
.||+||+
T Consensus 278 ~INkSL~ 284 (359)
T 1x88_A 278 NINQSLL 284 (359)
T ss_dssp CCCHHHH
T ss_pred hhhHHHH
Confidence 5555553
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1e-48 Score=359.87 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=152.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++ +|||||++++||+.++....
T Consensus 54 ~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~-----~Giipr~~~~lF~~~~~~~~ 127 (349)
T 3t0q_A 54 NFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG-----DGMIPMTLSHIFKWTANLKE 127 (349)
T ss_dssp EEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred eeecCEEECCCccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC-----CchhhHHHHHHHHHHHHhhh
Confidence 499999999 9999999996 6899999999999999999999999999999974 59999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-----------CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-Hhc
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS-----------NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLS 146 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-----------~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~ 146 (241)
. ++.|.|.+||+||| ||+|+|||++.. ..+.+++++ .++++|+|++++.|.+++|+.++|. |.+
T Consensus 128 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~ 204 (349)
T 3t0q_A 128 R-GWNYEMECEYIEIY--NETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASK 204 (349)
T ss_dssp G-TEEEEEEEEEEEEE--TTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC--
T ss_pred c-CceeEEEEEEEEEE--cchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHH
Confidence 3 57999999999999 999999998753 334566665 4679999999999999999999999 999
Q ss_pred CCCccccCCCCCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHh
Q psy9852 147 RDSLISNKRNDNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKRE 224 (241)
Q Consensus 147 ~R~~~~T~~N~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (241)
+|++++|.||+.||| ++++...+... ...+.. .. |-|.. +|||||||+.+ ++..++|+.|...|
T Consensus 205 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~------~kL~l--VDLAGSEr~~~-----t~~~g~rl~E~~~I 270 (349)
T 3t0q_A 205 MRSTAATRSNERSSRSHSVFMVHINGRNLHTGET-SQ------GKLNL--VDLAGSERINS-----SAVTGERLRETQNI 270 (349)
T ss_dssp ----------CTGGGSEEEEEEEEEEEETTTCCE-EE------EEEEE--EECCCCCCCC---------CCHHHHHHHHH
T ss_pred hCcccccccccccCCcceEEEEEEEEEecCCCCe-eE------EEEEE--EeCCCCCcccc-----ccCccccchhHHhh
Confidence 999999999999999 44333333211 111111 00 11222 69999988765 45678899999999
Q ss_pred hHHHH
Q psy9852 225 KRALL 229 (241)
Q Consensus 225 ~~~~~ 229 (241)
|+||+
T Consensus 271 NkSL~ 275 (349)
T 3t0q_A 271 NKSLS 275 (349)
T ss_dssp HHHHH
T ss_pred hHhHH
Confidence 99886
No 21
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=8.7e-49 Score=363.11 Aligned_cols=215 Identities=25% Similarity=0.302 Sum_probs=160.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC--------CCCCCCchHHHHHHHH
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ--------SSATLGVIPSAISWLF 71 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~--------~~~~~GIipr~~~~LF 71 (241)
.|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. +..++|||||++++||
T Consensus 68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF 147 (373)
T 2wbe_C 68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLF 147 (373)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHH
T ss_pred EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHH
Confidence 499999999 9999999999999999999999999999999999999999999864 2347899999999999
Q ss_pred HHHHhcccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC-CCceEEEcc--CCcEEecCcEEEeCCCHHHHHHHHH-HhcC
Q psy9852 72 RCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYS-NGKFFRLCF--LKRFHAEEDEEMPCPVPPPLHSNLL-TLSR 147 (241)
Q Consensus 72 ~~i~~~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~-~~~~l~~~~--~~g~~v~glt~v~V~s~~d~~~ll~-g~~~ 147 (241)
+.++.. .+.|.|.|||+||| ||+|+|||++.. ..+.+++++ .++++|+|++++.|.+++|++++|+ |.++
T Consensus 148 ~~i~~~----~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~ 221 (373)
T 2wbe_C 148 DELRMM----EVEYTMRISYLELY--NEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKER 221 (373)
T ss_dssp HHHHHC----CSCEEEEEEEEEEE--TTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhc----CceEEEEEEEEEEe--CCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhh
Confidence 999764 35899999999999 999999998764 345667774 5789999999999999999999999 9999
Q ss_pred CCccccCCCCCCch-hhhhceeee--CCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhH
Q psy9852 148 DSLISNKRNDNSSL-YSNSNERLH--DPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRL 218 (241)
Q Consensus 148 R~~~~T~~N~~SSr-f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~ 218 (241)
|++++|.||+.||| ++++...++ +....+.. ..+ -|-|. -+|||||||+.+++ ++++..+|.+|
T Consensus 222 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~-~~~----~skL~--lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL 294 (373)
T 2wbe_C 222 RKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED-MLK----IGKLN--LVDLAGSENVSKAGNEKGIRVRETVNINQSL 294 (373)
T ss_dssp HTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCC-EEE----EEEEE--EEECCCC--------------------CHHH
T ss_pred hccccccCCCCCCCccEEEEEEEEEecCCCCCCc-cee----EEEEE--EEECCCCCccccccCccccchhHHHHHHHHH
Confidence 99999999999999 444444432 11111111 001 01122 26999999987763 33444555555
Q ss_pred HHHHHhhHHH
Q psy9852 219 EQLKREKRAL 228 (241)
Q Consensus 219 ~~~~~~~~~~ 228 (241)
..|++.=.+|
T Consensus 295 ~aLg~vI~aL 304 (373)
T 2wbe_C 295 LTLGRVITAL 304 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 22
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.2e-48 Score=363.23 Aligned_cols=211 Identities=19% Similarity=0.135 Sum_probs=155.0
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~ 76 (241)
+|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|+.. ....+|||||++++||..++.
T Consensus 102 ~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~ 181 (387)
T 2heh_A 102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQ 181 (387)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhc
Confidence 499999999 9999999999999999999999999999999999999999999642 124689999999999999876
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
.... .+.|.|.|||+||| ||+|+|||++. ..+.+++++.++++|+|++++.|.+++|+.++|+ |.++|++++|.|
T Consensus 182 ~~~~-~~~~~V~vS~~EIY--nE~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~ 257 (387)
T 2heh_A 182 PCYR-KLGLEVYVTFFEIY--NGKLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFA 257 (387)
T ss_dssp HHHH-TTTCEEEEEEEEEE--TTEEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC-------
T ss_pred cccc-CceEEEEEEEEEec--CCeEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcC
Confidence 4322 36899999999999 99999999875 3578899999999999999999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHhhHHH
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 228 (241)
|+.||| ++++...+.... . .-|-|.. +|||||||+.+++ ..+...+|.+|..|++.=++|
T Consensus 258 N~~SSRSH~Ifti~v~~~~---~--------~~skL~l--VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL 324 (387)
T 2heh_A 258 NSNSSRSHACFQIILRAKG---R--------MHGKFSL--VDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 324 (387)
T ss_dssp --CGGGSEEEEEEEEESSS---S--------EEEEEEE--EECCCCC---------------CHHHHHHHHHHHHHHHHH
T ss_pred cCCcccceEEEEEEEEECC---e--------eeeEEEE--EECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHH
Confidence 999999 555555554321 1 0111222 6999999987763 224555666666666554444
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-48 Score=364.22 Aligned_cols=206 Identities=25% Similarity=0.326 Sum_probs=161.9
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
.|.||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||+|++ +|||||++++||+.++....
T Consensus 109 ~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~-----~Giipr~~~~lF~~i~~~~~ 182 (403)
T 4etp_A 109 EFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG-----DGIIPSTISHIFNWINKLKT 182 (403)
T ss_dssp EEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCC-----CccchhHHHHHHHHHHhhhc
Confidence 499999999 9999999986 6799999999999999999999999999999864 59999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---------CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-HhcCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---------NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLSRD 148 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---------~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R 148 (241)
.++.|.|.|||+||| ||+|+|||++.. ..+.+++++ .++++|+|++++.|.+++++..+|. |.++|
T Consensus 183 -~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 259 (403)
T 4etp_A 183 -KGWDYKVNAEFIEIY--NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLR 259 (403)
T ss_dssp -TTEEEEEEEEEEEEE--TTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C
T ss_pred -cCceEEEEEEEEEEe--cceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 368999999999999 999999998764 223556665 5678999999999999999999999 99999
Q ss_pred CccccCCCCCCch-hhhhceeeeCCC-CCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhH
Q psy9852 149 SLISNKRNDNSSL-YSNSNERLHDPG-GTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKR 226 (241)
Q Consensus 149 ~~~~T~~N~~SSr-f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (241)
++++|.||+.||| ++++...+.... ..+.. ... -|.. +|||||||+.+ ++..+.|+.|...||+
T Consensus 260 ~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~-~~~------kL~l--VDLAGSEr~~~-----t~~~g~rl~E~~~INk 325 (403)
T 4etp_A 260 STASTASNEHSSRSHSIFIIHLSGSNAKTGAH-SYG------TLNL--VDLAGSERINV-----SQVVGDRLRETQNINK 325 (403)
T ss_dssp ----CHHHHHHHTSEEEEEEEEEEEETTTCCE-EEE------EEEE--EECCCCCCCCC-----SSCCHHHHHHHHHHHH
T ss_pred ccccccCCcccCCcccEEEEEEEEeecCCCCe-eEE------EEEE--EECCCCccccc-----cCChhHHHHHHHHHHH
Confidence 9999999999999 444433332111 11111 111 1222 69999988755 4567899999999999
Q ss_pred HHH
Q psy9852 227 ALL 229 (241)
Q Consensus 227 ~~~ 229 (241)
||+
T Consensus 326 SL~ 328 (403)
T 4etp_A 326 SLS 328 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.9e-48 Score=364.14 Aligned_cols=211 Identities=19% Similarity=0.163 Sum_probs=161.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~ 76 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ....+|||||++++||..++.
T Consensus 122 ~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~ 201 (410)
T 1v8k_A 122 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 201 (410)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhh
Confidence 499999999 9999999999999999999999999999999999999999999642 124689999999999999875
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
.... ++.|.|.|||+||| ||+|+|||++. ..+.+++++.++++|+|++++.|.|++|+.++|. |.++|++++|.|
T Consensus 202 ~~~~-~~~~~V~vS~lEIY--nE~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~ 277 (410)
T 1v8k_A 202 PRYR-NLNLEVYVTFFEIY--NGKVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFA 277 (410)
T ss_dssp HHHH-TTCCEEEEEEEEEE--TTEEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC------
T ss_pred hccc-CccEEEEEEEEEee--CCEEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccC
Confidence 4322 46899999999999 99999999875 4578899999999999999999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc------ccccccchhhHHHHHHhhHHH
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND------FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 228 (241)
|+.||| ++++...+...+ .. -|-|.. +|||||||+.+++ ..+...+|.+|..|++.=.+|
T Consensus 278 N~~SSRSH~Ifti~v~~~~---~~--------~skL~l--VDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL 344 (410)
T 1v8k_A 278 NSNSSRSHACFQILLRTKG---RL--------HGKFSL--VDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344 (410)
T ss_dssp --CCCSSEEEEEEEEESSS---SE--------EEEEEE--EECCCCCC------------TTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEEEEeCC---cc--------eeEEEE--EECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 999999 555555554321 11 111222 6999999987763 224455666666666554443
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2e-48 Score=364.63 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=160.4
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|+||+||+ +++|++||+ .+.|+|+++++|||+||||||||||||||||+|.+. ++|||||++++||+.++....
T Consensus 107 ~F~FD~VF~~~~~Q~~Vf~-~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~ 182 (412)
T 3u06_A 107 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---SVGVIPRTVDLLFDSIRGYRN 182 (412)
T ss_dssp EEECSEEECTTCCHHHHHT-TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETT---EECHHHHHHHHHHHHHHHHGG
T ss_pred EEeeCeEcCCCCCHHHHHH-HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCC---CCccHHHHHHHHHHhhhhhcc
Confidence 499999999 999999998 578999999999999999999999999999999876 589999999999999987654
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEE--EccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCCC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFR--LCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKRN 156 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~--~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~N 156 (241)
. ++.|.|.|||+||| ||+|+|||++..+.+.++ +++.++++|+|++++.|.+++++..+|. |.++|++++|.||
T Consensus 183 ~-~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 259 (412)
T 3u06_A 183 L-GWEYEIKATFLEIY--NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 259 (412)
T ss_dssp G-TEEEEEEEEEEEEE--TTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CH
T ss_pred c-CceEEEEEEEEEEe--CCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCC
Confidence 3 57999999999999 999999998887766665 5678899999999999999999999999 9999999999999
Q ss_pred CCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhc-cccccccchhhHHHHHHhhHHH
Q psy9852 157 DNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKN-DFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 157 ~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
+.||| ++++...+... ...+.. .. |-|.. +||||||++.+. .+.++..+|.+|..|++.=.+|
T Consensus 260 ~~SSRSH~if~i~v~~~~~~~~~~-~~------~kL~l--VDLAGSEr~~~~~rl~E~~~INkSL~aLg~vI~aL 325 (412)
T 3u06_A 260 ERSSRSHAVTKLELIGRHAEKQEI-SV------GSINL--VDLAGSESPKTSTRMTETKNINRSLSELTNVILAL 325 (412)
T ss_dssp HHHTTCEEEEEEEEEEEETTTTEE-EE------EEEEE--EECCCCCC----------CTTTHHHHHHHHHHHHH
T ss_pred CCCcCceEEEEEEEEEEeCCCCCE-EE------EEEEE--EECCCCCcCCccchhHhHHHHhHHHHHHHHHHHHH
Confidence 99999 44443333211 111111 00 11222 699999987432 3445556666666665554444
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.3e-48 Score=355.41 Aligned_cols=209 Identities=20% Similarity=0.181 Sum_probs=163.2
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeeccCCC--CCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMVGSPQ--SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~G~~~--~~~~~GIipr~~~~LF~~i~~ 76 (241)
+|.||+||+ +++|++||+.++.|+|+++++ ||||||||||||||||||||+|+.. ....+|||||++++||+.++.
T Consensus 51 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~ 130 (360)
T 1ry6_A 51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNI 130 (360)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHH
T ss_pred eEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHh
Confidence 499999999 999999999999999999996 9999999999999999999999863 134799999999999999987
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
... .+.+.|.+||+||| ||+|+|||++.. ...+++++.++++|+|++++.|.+++|+.++|. |.++|++++|.|
T Consensus 131 ~~~--~~~~~v~vS~~EIY--nE~v~DLL~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~ 205 (360)
T 1ry6_A 131 YDK--DNTKGIFISFYEIY--CGKLYDLLQKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQ 205 (360)
T ss_dssp HCS--SSCEEEEEEEEEEE--TTEEEESCCC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCC
T ss_pred hcc--CCceEEEEEEEEee--CCeeEEcccCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccc
Confidence 543 35899999999999 999999997764 456788999999999999999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
|+.||| ++++...+...... . . -|-|.. +|||||||+.+++-. ..+|+.|...||+||+
T Consensus 206 N~~SSRSH~if~i~v~~~~~~--~---~----~skL~l--VDLAGSEr~~~t~~~----~~~~~~E~~~INkSL~ 265 (360)
T 1ry6_A 206 NDESSRSHAILNIDLKDINKN--T---S----LGKIAF--IDLAGSERGADTVSQ----NKQTQTDGANINRSLL 265 (360)
T ss_dssp TTGGGGSEEEEEEEEEETTTT--E---E----EEEEEE--EECCCTTGGGGGGCS----SHHHHHHHHHHHHHHH
T ss_pred cCCCccceEEEEEEEEeccCC--c---c----eeEEEE--EECCCCccccccccc----cccchHHHHHHHHHHH
Confidence 999999 55554555322110 0 0 011222 699999998887421 1245666666777665
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.7e-48 Score=355.45 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=153.7
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCC---CCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQ---SSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~---~~~~~GIipr~~~~LF~~i~~ 76 (241)
+|.||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||.|... .+.++|||||++++||+.++.
T Consensus 62 ~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~ 141 (344)
T 3dc4_A 62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTA 141 (344)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 499999999 9999999999999999999999999999999999999999998753 135789999999999999988
Q ss_pred cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCCCCceEEEccCCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccCC
Q psy9852 77 QKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNKR 155 (241)
Q Consensus 77 ~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~~~~~l~~~~~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~~ 155 (241)
........|.|.+||+||| ||+|+|||++......+ ...+.++++++|.+++|+.++|+ |.++|++++|.|
T Consensus 142 ~~~~~~~~~~v~vS~~EIY--nE~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 213 (344)
T 3dc4_A 142 RQENNKDAIQVYASFIEIY--NEKPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNM 213 (344)
T ss_dssp SSSSCSSCCEEEEEEEEEE--SSCEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC------
T ss_pred hhhccccceEEEEEEEEEe--CCeeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccC
Confidence 7665556899999999999 99999999877643322 22346899999999999999999 999999999999
Q ss_pred CCCCch-hhhhceeeeCCCCCCccccccccccccccccccccchhhhhhhhcc-----ccccccchhhHHHHHHhhHHHH
Q psy9852 156 NDNSSL-YSNSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKND-----FNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 156 N~~SSr-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
|+.||| ++++...+.... .-|.|.. +|||||||+.+++ +.++..+|.+|..|++.=.+
T Consensus 214 N~~SSRSH~Ifti~v~~~~------------~~skl~l--VDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~a-- 277 (344)
T 3dc4_A 214 NSNSSRSHAIVTIHVKSKT------------HHSRMNI--VDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMS-- 277 (344)
T ss_dssp ----CCEEEEEEEEEECSS------------CEEEEEE--EECCCCCCC-------------CCSCCHHHHHHHHHHH--
T ss_pred CCCCCCceEEEEEEEEecC------------cEEEEEE--EECCCCccccccccccchhHHHHHHhHhHHHHHHHHHH--
Confidence 999999 665555554211 0112333 7999999887763 33444455555555443333
Q ss_pred HHhhhccccc
Q psy9852 230 IELAATKTHL 239 (241)
Q Consensus 230 ~~~~~~~~~~ 239 (241)
|+..+.|+
T Consensus 278 --L~~~~~hi 285 (344)
T 3dc4_A 278 --MAAGHTVI 285 (344)
T ss_dssp --HHTTCSSC
T ss_pred --HhccCCcC
Confidence 34455554
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=7.4e-46 Score=367.58 Aligned_cols=206 Identities=26% Similarity=0.333 Sum_probs=151.8
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhccc
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKH 79 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~~~ 79 (241)
+|+||+||+ +++|++||+. +.|+|+++++|||+||||||||||||||||.|+. +|||||++++||+.++....
T Consensus 431 ~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~-----~Giipr~~~~lf~~~~~~~~ 504 (715)
T 4h1g_A 431 RFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT-----NGMIPLSLKKIFNDIEELKE 504 (715)
T ss_dssp EEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTT-----TSHHHHHHHHHHHHHHHHGG
T ss_pred EEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCC-----CCcHHHHHHHHHHHHHHhhc
Confidence 499999999 9999999985 6799999999999999999999999999999854 69999999999999987655
Q ss_pred CCCcEEEEEEEEEEEeCCCCeEEEcCCCCC---CCceEEEcc-CCcEEecCcEEEeCCCHHHHHHHHH-HhcCCCccccC
Q psy9852 80 KTGARFSVRASAIEISSSSQHVKDLLSTYS---NGKFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLL-TLSRDSLISNK 154 (241)
Q Consensus 80 ~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~---~~~~l~~~~-~~g~~v~glt~v~V~s~~d~~~ll~-g~~~R~~~~T~ 154 (241)
. +..|.|+|||+||| ||+|+|||++.. ..+.++++. .++++|+|++++.|.|++++.++|. |.++|++++|.
T Consensus 505 ~-~~~~~v~~s~~Eiy--ne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~ 581 (715)
T 4h1g_A 505 K-GWSYTVRGKFIEIY--NEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATK 581 (715)
T ss_dssp G-TEEEEEEEEEEEEE--TTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC-------
T ss_pred C-CceEEEEEEEEEEE--CCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCccccc
Confidence 3 57999999999999 999999998753 234555544 5569999999999999999999999 99999999999
Q ss_pred CCCCCch-hhhhceeeeCC-CCCCccccccccccccccccccccchhhhhhhhccccccccchhhHHHHHHhhHHHH
Q psy9852 155 RNDNSSL-YSNSNERLHDP-GGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREKRALL 229 (241)
Q Consensus 155 ~N~~SSr-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (241)
+|++||| ++++...+... ...+.. .. |.|. -+|||||||+.++ +..++|+.|...||+||+
T Consensus 582 ~n~~ssRSH~i~~i~~~~~~~~~~~~-~~------~~l~--lvDLAGsEr~~~~-----~~~g~~~~E~~~IN~sL~ 644 (715)
T 4h1g_A 582 SNDHSSRSHSIFIIDLQGYNSLTKES-SY------GTLN--LIDLAGSERLNNS-----RAEGDRLKETQAINKSLS 644 (715)
T ss_dssp ---CGGGSEEEEEEEEEEEETTTCCE-EE------EEEE--EEECCCCCC--------------CHHHHHHHHHHHH
T ss_pred ccCccccccEEEEEEEEEEecCCCCE-eE------EEEE--EEeCCCccccccc-----CChhHHHHHHHHHHHHHH
Confidence 9999999 44443333211 111110 00 1122 2699999988765 467788888888888886
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.6e-22 Score=178.15 Aligned_cols=120 Identities=12% Similarity=0.137 Sum_probs=104.7
Q ss_pred CeecceecC-CCChH--HHHHHHHHHHHHHHhc-CCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHh
Q psy9852 1 MFAFDAIFS-DEPQS--EICTSALSDVIQAVIS-GSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe--~Vy~~~v~plV~~vl~-G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~ 76 (241)
+|.||+||+ .+.|+ +||++ +.++|+++++ |||+|||||||||+||| ||++..+|...+.
T Consensus 58 ~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT----------------~ral~q~f~~~~~ 120 (298)
T 2o0a_A 58 VYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL----------------RESLIKFLAEKDT 120 (298)
T ss_dssp EEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH----------------HHHHHHHHHSTTS
T ss_pred eEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc----------------HHHHHHHHHHhhh
Confidence 599999999 99999 99985 8999999999 99999999999999999 9999999987644
Q ss_pred -cccCCCcEEEEEEEEEEEeCCCCeEEEcCCCCC--CCceEEEccCCcEEecCcEEEeCCC-HHHHHHHH
Q psy9852 77 -QKHKTGARFSVRASAIEISSSSQHVKDLLSTYS--NGKFFRLCFLKRFHAEEDEEMPCPV-PPPLHSNL 142 (241)
Q Consensus 77 -~~~~~~~~~~V~vS~lEIY~~nE~v~DLL~~~~--~~~~l~~~~~~g~~v~glt~v~V~s-~~d~~~ll 142 (241)
.. +.|.+.+||+|||. ||.++|||.... ....++.+.++..++.|++.++|.+ ++|+..++
T Consensus 121 ~~~----~~Y~~tlq~veLy~-Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~ 185 (298)
T 2o0a_A 121 IYQ----KQYVITLQFVFLSD-DEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNF 185 (298)
T ss_dssp HHH----HHEEEEEEEEEEEC-C-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTT
T ss_pred hcc----cceEEEEEEEEEec-CCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHh
Confidence 22 69999999999997 899999996332 2447788899999999999999999 99999998
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.52 E-value=0.0075 Score=48.25 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=33.4
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+||.... +..|+++++ .+..+++++-......++-+|++|+|||+.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35666555 556777876 45666665433334567889999999999883
No 31
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.18 E-value=0.027 Score=45.62 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=30.5
Q ss_pred ecceecC-CCChHHHHHHHHHHHHHHHhcCCC-EEEEcccccCCCcceeec
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSD-GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n-~ti~aYGqtgSGKTyTm~ 51 (241)
+||.+.. +..+..+++ .+...+...-.+.. ..++-||++|+|||+.+.
T Consensus 23 ~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred CHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 4555544 445666766 34445554333322 678899999999999873
No 32
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.67 E-value=0.054 Score=47.81 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=30.0
Q ss_pred ecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+||.+.. ...+..+++ .+...++..-.+....++-||++|+||||.+.
T Consensus 122 tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3444333 334555665 44455555433335678899999999999884
No 33
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.94 E-value=0.14 Score=39.59 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++.+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 444555555566677899999999999987
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.15 E-value=0.16 Score=39.43 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++.+..+....++-+|++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344555555566678899999999999876
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.76 E-value=0.21 Score=44.59 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=19.8
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+-.|...+++.||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34677889999999999999887
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.44 Score=44.32 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=46.1
Q ss_pred cceecC-CCChHHHHHHHHHHHHH-HHhc--CCC--EEEEcccccCCCcceee--------------ccCCCCCCCCCch
Q psy9852 4 FDAIFS-DEPQSEICTSALSDVIQ-AVIS--GSD--GCLFCFGHARLGKSYTM--------------VGSPQSSATLGVI 63 (241)
Q Consensus 4 FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~n--~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIi 63 (241)
||-|-+ +.--+++.+.+..|+.. ..+. |.. -.|+-||+.|+|||... -|+.--....|--
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~ 250 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEG 250 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchh
Confidence 444444 33334455545555542 2333 322 34899999999999643 2333223356888
Q ss_pred HHHHHHHHHHHHhcc
Q psy9852 64 PSAISWLFRCISEQK 78 (241)
Q Consensus 64 pr~~~~LF~~i~~~~ 78 (241)
.+.++.+|..+....
T Consensus 251 e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 251 PRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999887653
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.94 E-value=0.25 Score=42.88 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=40.3
Q ss_pred ecceecC-CCChHHHHHHHHHHHHHHHhcCCC----EEEEcccccCCCcceeec------cCCC--------CCCCCCch
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQAVISGSD----GCLFCFGHARLGKSYTMV------GSPQ--------SSATLGVI 63 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n----~ti~aYGqtgSGKTyTm~------G~~~--------~~~~~GIi 63 (241)
+||..++ .---+.+.+..+..++...+.-.+ ..++-||++|+|||+... |.+- .....|-.
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 3677776 333344445555566655543222 357889999999998764 2110 01134556
Q ss_pred HHHHHHHHHHH
Q psy9852 64 PSAISWLFRCI 74 (241)
Q Consensus 64 pr~~~~LF~~i 74 (241)
+..+..+|+..
T Consensus 81 ~~~i~~~f~~a 91 (293)
T 3t15_A 81 AKLIRQRYREA 91 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677777766
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=0.64 Score=43.32 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=48.1
Q ss_pred ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceeec--------------cCCCCCCCCCc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTMV--------------GSPQSSATLGV 62 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GI 62 (241)
+||.|-+ +.--+++.+.++.|+.. ..+. |. --.|+-||+.|+|||.... |+.--....|-
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 3555555 44445566666666652 2333 32 3468999999999996542 32222234677
Q ss_pred hHHHHHHHHHHHHhcc
Q psy9852 63 IPSAISWLFRCISEQK 78 (241)
Q Consensus 63 ipr~~~~LF~~i~~~~ 78 (241)
-.+.++.+|.......
T Consensus 259 se~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKA 274 (434)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8899999999887754
No 39
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.15 E-value=0.63 Score=48.00 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCccccCCCCCCchhhhhceeeeCCCC
Q psy9852 135 PPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGG 174 (241)
Q Consensus 135 ~~d~~~ll~g~~~R~~~~T~~N~~SSrf~~~~~~~~~~~~ 174 (241)
+-+..-+|++--+ +.|.+|++||||.-..+.-.++.|
T Consensus 182 Il~snpiLEAFGN---AKT~rNdNSSRFGK~iel~F~~~G 218 (1052)
T 4anj_A 182 IVEANPLLEAFGN---AKTVRNNNSSRFGKFVEIHFNEKS 218 (1052)
T ss_dssp HHHTHHHHHHHHE---ECCSSCTTEESSEEEEEEEECTTS
T ss_pred HHHHHHHHHhccC---CCCCCCCCcCCceeEEEEEECCCC
Confidence 3455667772223 679999999999888777666654
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.48 E-value=0.31 Score=42.36 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=28.4
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||.+.....+...+.. +..+++.-- .....++-||++|+|||+.+.
T Consensus 8 ~~f~~fv~g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CCSSSCCCCTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCcccCCCCCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 567766542234445543 444443321 123468899999999999873
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.58 E-value=0.31 Score=41.09 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=21.4
Q ss_pred eecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
|+||.+.+ +..-..+.+ .+..+.. .+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 56777766 433333332 2223222 3456888999999999876
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.55 E-value=0.38 Score=40.42 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=28.8
Q ss_pred eecceecC-CCChHHHHHHHHHHHHH-HHhc----CCCEEEEcccccCCCcceee
Q psy9852 2 FAFDAIFS-DEPQSEICTSALSDVIQ-AVIS----GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 2 F~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~----G~n~ti~aYGqtgSGKTyTm 50 (241)
+.||.+.+ +...+.+.+ .+..+-. ..+. .....++-||++|+|||+.+
T Consensus 8 ~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCSTTSSSCTTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 46777777 655555544 3332210 1111 22334889999999999886
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.48 E-value=0.35 Score=42.00 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.3
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|+-||++|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456899999999999875
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.79 E-value=0.51 Score=37.29 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=16.5
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343335899999999999876
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.76 E-value=0.36 Score=40.88 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=16.1
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
....++-||++|+|||+.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34568999999999998764
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.72 E-value=0.78 Score=42.42 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred cceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCch
Q psy9852 4 FDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGVI 63 (241)
Q Consensus 4 FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIi 63 (241)
||-|-+ +.--+++-+.+..|+.. ..+. |. --.|+-||+.|+|||... -|+.--....|--
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence 444545 44445566656666652 2444 33 245899999999999654 2332222346778
Q ss_pred HHHHHHHHHHHHhcc
Q psy9852 64 PSAISWLFRCISEQK 78 (241)
Q Consensus 64 pr~~~~LF~~i~~~~ 78 (241)
.+.++.+|.......
T Consensus 227 e~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 227 SRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999988754
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.48 E-value=0.28 Score=42.83 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl-~G~n~ti~aYGqtgSGKTyTm 50 (241)
-..+++..+.. ...+..++ .+...+++-||++|+|||+.+
T Consensus 21 ~~gr~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 21 LPHREAELRRL-AEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CTTCHHHHHHH-HHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34455555432 33333333 344567899999999999887
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.42 E-value=0.93 Score=38.25 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=20.6
Q ss_pred HHHHHh---cCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVI---SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl---~G~n~ti~aYGqtgSGKTyTm 50 (241)
++..+. ......++-||++|+|||+..
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 444443 556678999999999999876
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.89 E-value=0.64 Score=37.55 Aligned_cols=20 Identities=10% Similarity=0.386 Sum_probs=16.9
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
+....++-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999999887
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.07 E-value=0.51 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=17.4
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.+....++-||++|+|||+..
T Consensus 40 ~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 40 AVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp HHCGGGCCEEEECCGGGCTTHHH
T ss_pred hhCCCCceEEEECCCCccHHHHH
Confidence 33334445999999999999876
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.52 E-value=1.4 Score=40.98 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGV 62 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GI 62 (241)
+||.|-+ +.--+++-+.+..|+.. ..+. |. --.|+-||+.|+|||... -|+.--....|-
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 3445545 33344555555566642 2444 32 246899999999999653 233222234677
Q ss_pred hHHHHHHHHHHHHhcc
Q psy9852 63 IPSAISWLFRCISEQK 78 (241)
Q Consensus 63 ipr~~~~LF~~i~~~~ 78 (241)
-.+.+..+|.......
T Consensus 259 se~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 259 SARIIREMFAYAKEHE 274 (437)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7889999999887654
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.50 E-value=0.22 Score=41.73 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=14.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
++-||++|+|||+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8899999999998764
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.03 E-value=1.1 Score=39.19 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCC-E--EEEcccccCCCcceee
Q psy9852 11 EPQSEICTSALSDVIQAVISGSD-G--CLFCFGHARLGKSYTM 50 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~G~n-~--ti~aYGqtgSGKTyTm 50 (241)
..+++..+. +...+...+.|.. . +++-+|++|+|||..+
T Consensus 20 ~gr~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 445555553 3445555555533 4 6889999999999876
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.41 E-value=0.32 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.6
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
.....|+-||++|+|||+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567899999999999875
No 55
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.26 E-value=0.96 Score=39.62 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCE--EEEcccccCCCcceeec
Q psy9852 11 EPQSEICTSALSDVIQAVISGSDG--CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~G~n~--ti~aYGqtgSGKTyTm~ 51 (241)
..|+.+-+ .+..+++.+..|... .++-||++|+|||+...
T Consensus 47 vG~~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 47 VGQLAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp ESCHHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred cChHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 34545543 345566666666654 78999999999998764
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.04 E-value=0.72 Score=42.54 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred eecceecCCCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 2 F~FD~VF~~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+||.......+...+. .+..+.+. .|..-.++-||++|+|||+.+.
T Consensus 102 ~tfd~fv~g~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CSGGGCCCCTTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CChhhcCCCCchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 56776543223333443 23333332 1213468899999999999884
No 57
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.94 E-value=0.98 Score=41.63 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=29.7
Q ss_pred ecC-CCChHHHHHHHHHHHHHHHhcCCC--EEEEcccccCCCcceee
Q psy9852 7 IFS-DEPQSEICTSALSDVIQAVISGSD--GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 7 VF~-~a~Qe~Vy~~~v~plV~~vl~G~n--~ti~aYGqtgSGKTyTm 50 (241)
.|+ -..|+++-+ .+..+++.+..|.. ..++-||++|+|||+..
T Consensus 35 ~~~~iiG~~~~~~-~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 35 AASGLVGQENARE-ACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp EETTEESCHHHHH-HHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred chhhccCHHHHHH-HHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 344 456666665 34566677766654 36888999999999765
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.82 E-value=0.38 Score=41.09 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=27.0
Q ss_pred CEEEEcccccCCCcceeec------c--------CCCCCCCCCchHHHHHHHHHHHHh
Q psy9852 33 DGCLFCFGHARLGKSYTMV------G--------SPQSSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~------G--------~~~~~~~~GIipr~~~~LF~~i~~ 76 (241)
...++-||++|+|||+.+. + ..-.....|-.......+|.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARH 111 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4578999999999997652 1 111111234445666677766554
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.15 E-value=1.7 Score=40.93 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred ecceecC-CCChHHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGV 62 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GI 62 (241)
+||-|-+ +.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||... -|..--....|-
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCH
Confidence 3444444 33334455544555542 2344 32 346999999999999643 233222235677
Q ss_pred hHHHHHHHHHHHHhcc
Q psy9852 63 IPSAISWLFRCISEQK 78 (241)
Q Consensus 63 ipr~~~~LF~~i~~~~ 78 (241)
-.+.++.+|.......
T Consensus 287 sek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 287 GARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8899999999887754
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.11 E-value=2.6 Score=39.34 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH-HHhc--CC--CEEEEcccccCCCcceee--------------ccCCCCCCCCCchHHHHHHHHHHH
Q psy9852 14 SEICTSALSDVIQ-AVIS--GS--DGCLFCFGHARLGKSYTM--------------VGSPQSSATLGVIPSAISWLFRCI 74 (241)
Q Consensus 14 e~Vy~~~v~plV~-~vl~--G~--n~ti~aYGqtgSGKTyTm--------------~G~~~~~~~~GIipr~~~~LF~~i 74 (241)
+++.+.+..|+.. ..+. |. --.|+-||+.|+|||... -|+.--....|--.+.+..+|...
T Consensus 192 ~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 192 QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp HHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHH
Confidence 4455544455431 2333 32 356999999999999543 333322235688899999999998
Q ss_pred Hhcc
Q psy9852 75 SEQK 78 (241)
Q Consensus 75 ~~~~ 78 (241)
....
T Consensus 272 r~~a 275 (437)
T 4b4t_I 272 GENA 275 (437)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 7754
No 61
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.82 E-value=8.2 Score=34.56 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=59.2
Q ss_pred CeecceecC--CCChHHHHHHHHHHHHHHHh-cCCCEEEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHHHHhc
Q psy9852 1 MFAFDAIFS--DEPQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 1 tF~FD~VF~--~a~Qe~Vy~~~v~plV~~vl-~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~i~~~ 77 (241)
+|.|++|++ ..+-++++..-.++.++-.+ .+.|+.|+.-|..- + +..-+.|+..+...
T Consensus 93 ~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w-------~~Lr~~lL~fi~~k 153 (333)
T 4etp_B 93 VYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------H-------GSLRESLIKFLAEK 153 (333)
T ss_dssp EEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------C-------CHHHHHHHHHHHST
T ss_pred eEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------c-------HHHHHHHHHHHHhc
Confidence 489999999 44555566567899999888 79999999877652 1 23444555555443
Q ss_pred ccCCCcEEEEEEEEEEEeCCCCe-EEEcCCCCC
Q psy9852 78 KHKTGARFSVRASAIEISSSSQH-VKDLLSTYS 109 (241)
Q Consensus 78 ~~~~~~~~~V~vS~lEIY~~nE~-v~DLL~~~~ 109 (241)
..--.+.|.+.+.|+.+. ++. ..|||.+..
T Consensus 154 ~~~Y~~~y~i~lQ~V~Ls--e~~~S~DlL~~~~ 184 (333)
T 4etp_B 154 DTIYQKQYVITLQFVFLS--DDEFSQDMLLDYS 184 (333)
T ss_dssp TCHHHHHEEEEEEEEECC--SSSCCEESSCC--
T ss_pred ccccccceEEEEEEEEEc--CCCchhhhhcccc
Confidence 000024788999998888 444 699998763
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.27 E-value=0.95 Score=36.66 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3556677876 57788999999987
No 63
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.03 E-value=0.63 Score=40.93 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=28.7
Q ss_pred EEEEcccccCCCcceeec-------cCC--------CCCCCCCchHHHHHHHHHHHHhc
Q psy9852 34 GCLFCFGHARLGKSYTMV-------GSP--------QSSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~-------G~~--------~~~~~~GIipr~~~~LF~~i~~~ 77 (241)
..|+-||++|+|||+.+. +.. -.....|-....+..+|......
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~ 104 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN 104 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 468899999999998652 111 00123455677788888876643
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.92 E-value=1.7 Score=36.96 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=16.4
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
.-...++-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999877
No 65
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.21 E-value=0.4 Score=41.35 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=37.3
Q ss_pred cceecC-CCChHHHHHHHHHHHHH-HHhcCCC----EEEEcccccCCCcceeec--------------cCCCCCCCCCch
Q psy9852 4 FDAIFS-DEPQSEICTSALSDVIQ-AVISGSD----GCLFCFGHARLGKSYTMV--------------GSPQSSATLGVI 63 (241)
Q Consensus 4 FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~G~n----~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GIi 63 (241)
||.|-+ +.-.+++.+.++.|+-. .++++.+ ..++-||++|||||+.+- |.+-.....|-.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~ 88 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHH
Confidence 344433 33334444444555532 2344332 228899999999997643 222111123445
Q ss_pred HHHHHHHHHHHHh
Q psy9852 64 PSAISWLFRCISE 76 (241)
Q Consensus 64 pr~~~~LF~~i~~ 76 (241)
.+.+..+|+....
T Consensus 89 ~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 89 ERAVRQVFQRAKN 101 (274)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5667788887543
No 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.15 E-value=2.2 Score=35.19 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCEEEEcccccCCCcceeecc------CC--------CCCCCCCchHHHHHHHHHHHHh
Q psy9852 32 SDGCLFCFGHARLGKSYTMVG------SP--------QSSATLGVIPSAISWLFRCISE 76 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~G------~~--------~~~~~~GIipr~~~~LF~~i~~ 76 (241)
....++-||++|+|||+.+.- .+ -.....|.....+..+|.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARA 96 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHh
Confidence 345689999999999987631 11 0011234455666677776554
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.92 E-value=1.1 Score=35.66 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=18.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.++.+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3455677876 56678999999986
No 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.74 E-value=0.68 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.5
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++-+|++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667999999999988
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.62 E-value=0.36 Score=41.13 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++-||++|+|||+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38899999999998764
No 70
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.06 E-value=1.2 Score=41.07 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.+..++..-...++..|++|||||.+|
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455555555667888999999999998
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.19 E-value=1.4 Score=38.54 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHHhcC-CCEEEEcccccCCCcceee
Q psy9852 12 PQSEICTSALSDVIQAVISG-SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 12 ~Qe~Vy~~~v~plV~~vl~G-~n~ti~aYGqtgSGKTyTm 50 (241)
.+++..+. +...+..++.| ....++-||+.|+|||+.+
T Consensus 24 gr~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44445543 34445555444 3457999999999999876
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.72 E-value=1.3 Score=38.65 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=18.4
Q ss_pred HHHhcCCCEEEEcccccCCCcceeec
Q psy9852 26 QAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 26 ~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..+-.|--..++-||+.|+|||+++.
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHH
Confidence 33444543347889999999998764
No 73
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.65 E-value=1.2 Score=40.20 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..++.--...+...|++|||||.++
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344445445557888899999999998
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.02 E-value=1.5 Score=33.48 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.4
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45556899999999999866
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.96 E-value=2 Score=34.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=18.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677866 566789999999654
No 76
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.10 E-value=1.4 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456678877 577899999999773
No 77
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=71.09 E-value=2.1 Score=35.24 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.++.+++|.+ +++.++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3556678877 57778999999986
No 78
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.81 E-value=2.7 Score=36.36 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHHHHHh--cCCCEEEEcccccCCCcceeec
Q psy9852 11 EPQSEICTSALSDVIQAVI--SGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl--~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..++.+.+. +...+..+. ......|+-||++|+|||+...
T Consensus 32 iG~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 32 IGQESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSCHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 345555543 444555443 2344578999999999998653
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.74 E-value=0.98 Score=39.21 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.5
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
+....++-||+.|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 33457889999999999876
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.53 E-value=1.8 Score=34.31 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.9
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999876
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=70.20 E-value=1 Score=34.48 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
...+..+.. .+..|+-||++|+|||+...
T Consensus 17 ~~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 17 NREVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 333344333 34458889999999998764
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.99 E-value=0.99 Score=35.96 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=17.9
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.+++|.+ ++..++||+|||.+.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344566765 566899999999876
No 83
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=69.99 E-value=1.9 Score=36.62 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
-..|+++.+. +...+ -.|....++-||+.|+|||+..
T Consensus 27 ~~g~~~~~~~-l~~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 27 IVGQEHIVKR-LKHYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCSCHHHHHH-HHHHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred hhCCHHHHHH-HHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 3455555542 23333 3354445899999999999876
No 84
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.29 E-value=1.3 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35888999999999865
No 85
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.20 E-value=4.3 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCC-----CEEEEcccccCCCcceee
Q psy9852 19 SALSDVIQAVISGS-----DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 19 ~~v~plV~~vl~G~-----n~ti~aYGqtgSGKTyTm 50 (241)
.++...+..++.++ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 35666666666553 356788899999998754
No 86
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=69.11 E-value=1.2 Score=38.85 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=28.8
Q ss_pred EEEEcccccCCCcceeeccCCC--------------CCCCCCchHHHHHHHHHHHHhc
Q psy9852 34 GCLFCFGHARLGKSYTMVGSPQ--------------SSATLGVIPSAISWLFRCISEQ 77 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~G~~~--------------~~~~~GIipr~~~~LF~~i~~~ 77 (241)
..|+-||++|+|||+...--.. .....|-....+..+|......
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~ 109 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 109 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc
Confidence 4689999999999987632100 0113455667777888876654
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.25 E-value=3 Score=36.68 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=21.2
Q ss_pred HHHH-HHHhcC---CCEEEEc--ccccCCCcceee
Q psy9852 22 SDVI-QAVISG---SDGCLFC--FGHARLGKSYTM 50 (241)
Q Consensus 22 ~plV-~~vl~G---~n~ti~a--YGqtgSGKTyTm 50 (241)
...+ ..+..| ....++. ||+.|+|||..+
T Consensus 35 ~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 3444 555555 4567888 999999999876
No 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.22 E-value=1.9 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCEEEEcccccCCCccee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
..+..++.|.+ +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34555677866 57789999999976
No 89
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=67.97 E-value=1.7 Score=36.93 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++-+|++|+|||+..
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999876
No 90
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.94 E-value=1.5 Score=37.87 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+...+..|....++-||++|+|||+.+
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333444553344889999999999876
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.72 E-value=3.5 Score=34.18 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.1
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 346899999999999765
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=67.71 E-value=2 Score=36.32 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.4
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-||++|+|||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999876
No 93
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.62 E-value=2.7 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3456678877 45667999999986
No 94
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.35 E-value=2.8 Score=34.04 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=18.1
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++|.++ +..++||||||...
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4556788775 66689999999763
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.87 E-value=2 Score=36.74 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCEEEEcccccCCCcceee
Q psy9852 32 SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm 50 (241)
-...+...|++|||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456777899999999988
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=66.62 E-value=1.2 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.8
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...|+-||++|+|||+...
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997654
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.45 E-value=3.1 Score=36.21 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHHHHhcCC---CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGS---DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~---n~ti~aYGqtgSGKTyTm 50 (241)
..+..+++|. .-||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466777776 347999999999999866
No 98
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.39 E-value=2.5 Score=36.54 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..++.|-.-.+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667774445788899999999763
No 99
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.21 E-value=3 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455677877 456679999999753
No 100
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.13 E-value=3.2 Score=36.37 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..+++|.+ ++..++||||||...
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34566778888 577899999999863
No 101
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=65.76 E-value=3.2 Score=33.43 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=18.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677877 456679999999754
No 102
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=65.42 E-value=3 Score=37.98 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=20.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..++.|.+..+++.++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34566777666789999999999976
No 103
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=64.76 E-value=1.7 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=16.5
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
.|....++-||+.|+|||+..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354445899999999999875
No 104
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.29 E-value=1.7 Score=37.70 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 5788999999999876
No 105
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=63.88 E-value=1.4 Score=40.51 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999875
No 106
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=63.82 E-value=4.2 Score=37.55 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
.+++.+.......++-||++|+|||+...+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 344444455666788999999999987754
No 107
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.59 E-value=2.6 Score=39.52 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=16.8
Q ss_pred CCCEEEEcccccCCCcceeec
Q psy9852 31 GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.....|+-||++|+|||+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 345679999999999998653
No 108
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=63.00 E-value=3.5 Score=33.93 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++..+.+|.+ ++..|+||||||..+
T Consensus 69 ~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 3445556654 567899999999754
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.76 E-value=4.2 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHHHHhc--CCCEEEEcccccCCCcceee
Q psy9852 11 EPQSEICTSALSDVIQAVIS--GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 11 a~Qe~Vy~~~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm 50 (241)
..++.+.+. +..++..+.. .....++-+|++|+|||+..
T Consensus 15 ig~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 15 IGQERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSCHHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred hCHHHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 334444432 3444444332 34467888999999999765
No 110
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.51 E-value=3.3 Score=39.13 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcccccCCCcceeec
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+-.|.+ +..-|+||||||.+|.
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHHH
Confidence 345666 5667999999999874
No 111
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.51 E-value=3.7 Score=38.63 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++.+.+|..-.+++ ++||||||.++
T Consensus 187 i~~~~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 187 INRAVQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCceEEE-ecCCCChHHHH
Confidence 344445555676655544 89999999987
No 112
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=61.95 E-value=3.5 Score=36.03 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
..++.+++|.+..++..++||||||...
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456677774555778899999999873
No 113
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.93 E-value=4.1 Score=33.24 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.++ +...+||||||..
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHH
Confidence 34456778774 5667999999976
No 114
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.82 E-value=4 Score=34.01 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+. +..++||||||...
T Consensus 73 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 34556778774 55679999999863
No 115
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.27 E-value=2.5 Score=35.63 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=18.4
Q ss_pred HHHhcCC--CEEEEcccccCCCcceee
Q psy9852 26 QAVISGS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 26 ~~vl~G~--n~ti~aYGqtgSGKTyTm 50 (241)
+.++.|. .-+++-||+.|+|||+..
T Consensus 49 ~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 49 KSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3444453 246999999999999876
No 116
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=61.00 E-value=3.2 Score=38.42 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
-..|+.+.. ...++...+-.|.-..++-||++|+|||+...
T Consensus 28 ivGq~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 28 YIGQQHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCSCHHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred hCCcHHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 345655542 12344444445655689999999999998764
No 117
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.93 E-value=3.8 Score=33.75 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++|.+. ++.++||||||...
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 4456678774 55679999999873
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=60.42 E-value=4.1 Score=34.13 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.4
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
..|+..|+.|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578889999999865
No 119
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.04 E-value=3.1 Score=35.20 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=16.5
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
-.|.-..++-||+.|+|||+..
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3444334889999999999875
No 120
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=59.92 E-value=3 Score=33.70 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
++.+++|.++ +..++||||||.+
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4556677764 5678999999986
No 121
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.55 E-value=4.5 Score=35.90 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=18.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677875 57889999999984
No 122
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=59.47 E-value=4.1 Score=35.18 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|....++..++||||||...
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 455667774445677899999999753
No 123
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.36 E-value=4.6 Score=35.53 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=18.9
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ ++..++||||||...
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3556778877 566789999999654
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=58.94 E-value=2.6 Score=37.99 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+.---...+...|++|||||.++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443334556788899999999998
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.12 E-value=5.5 Score=34.12 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=15.0
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++-+|++|+|||+.+.
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 457888999999998874
No 126
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=57.21 E-value=2.6 Score=42.01 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+..+++.+..+....++-||++|+|||+.+.
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 3444444455655567889999999998774
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=56.98 E-value=3.7 Score=33.30 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHhcC-C--CEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISG-S--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G-~--n~ti~aYGqtgSGKTyTm~ 51 (241)
|-++.++.| . ...+.-+|++|+|||..+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 456666753 2 3457778999999998763
No 128
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.58 E-value=6.4 Score=38.46 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeecc
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~G 52 (241)
..+++.+.......++-||++|+|||....+
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 3444445556666789999999999987653
No 129
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=56.33 E-value=5.5 Score=36.51 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 10 DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..|.+++..+ +..+.++- ..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 44566555533 33333333 37888999999999876
No 130
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.97 E-value=4.7 Score=34.95 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
..+..|+-+|++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 44667899999999999865
No 131
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.78 E-value=2.3 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999865
No 132
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=55.72 E-value=6.5 Score=36.43 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.9
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.++.++.|.+-.+++.++||||||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566756556778889999999986
No 133
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.63 E-value=5.1 Score=35.00 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=18.3
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|.+ ++..++||||||...
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667877 566789999999754
No 134
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=55.53 E-value=4.3 Score=39.00 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|..++..... .+..|+.|||||+|+.
T Consensus 198 V~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 3344433333 3567999999999974
No 135
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.39 E-value=6.9 Score=31.35 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHhc---CCCEEEEcccccCCCcceee
Q psy9852 20 ALSDVIQAVIS---GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 20 ~v~plV~~vl~---G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++.+.. .-...|...|.+|||||..+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34445555553 23356777799999999865
No 136
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.88 E-value=6.2 Score=33.27 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
++.+++|.+ ++..++||+|||....
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 445567776 4566899999997653
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.79 E-value=2.7 Score=33.04 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.1
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+...|++|||||..+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999999885
No 138
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.56 E-value=4.8 Score=33.46 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=17.0
Q ss_pred HHhcCCCEEEEcccccCCCcceeec
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.++++.+ ++..|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4556654 5667899999998764
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.34 E-value=3 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=14.2
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
++-+|++|+|||+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999863
No 140
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.63 E-value=6.5 Score=39.38 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=46.1
Q ss_pred ecceecC-CCChHHHHHHHHHHHHH-HHhcCCC----EEEEcccccCCCcceeec--------------cCCCCCCCCCc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQ-AVISGSD----GCLFCFGHARLGKSYTMV--------------GSPQSSATLGV 62 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~G~n----~ti~aYGqtgSGKTyTm~--------------G~~~~~~~~GI 62 (241)
+||.|=+ +.--+++.+.+..|+.. .++..+. ..|+-||+.|+|||...- |.+-.....|-
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchH
Confidence 4566666 55556666655556653 3555554 369999999999985432 11100123466
Q ss_pred hHHHHHHHHHHHHhc
Q psy9852 63 IPSAISWLFRCISEQ 77 (241)
Q Consensus 63 ipr~~~~LF~~i~~~ 77 (241)
....+..+|+.....
T Consensus 282 se~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 282 SESNLRKAFEEAEKN 296 (806)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHc
Confidence 677788888876654
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.48 E-value=6.5 Score=31.61 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=19.7
Q ss_pred HHHHHHHHHhc--CCCEEEEcccccCCCcceee
Q psy9852 20 ALSDVIQAVIS--GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 20 ~v~plV~~vl~--G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++.+.+ .-.-.|...|++|||||..+
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 34445555443 23345556799999999866
No 142
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.40 E-value=5.4 Score=38.87 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..+++.+.......++-||++|+|||+.+.
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 344544455556678899999999998764
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.48 E-value=5.8 Score=34.37 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHHHHhcCC-CEEEEcccccCCCcceeec
Q psy9852 10 DEPQSEICTSALSDVIQAVISGS-DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 10 ~a~Qe~Vy~~~v~plV~~vl~G~-n~ti~aYGqtgSGKTyTm~ 51 (241)
-..|+++.+. +...+ -.|. ...++-||+.|+|||..+.
T Consensus 18 ~vg~~~~~~~-L~~~l---~~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 18 VVGQEHVLTA-LANGL---SLGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SCSCHHHHHH-HHHHH---HHTCCCSEEEEESCTTSSHHHHHH
T ss_pred ccCcHHHHHH-HHHHH---HhCCCCeEEEEECCCCCCHHHHHH
Confidence 3455555542 22233 2333 3467899999999998764
No 144
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=52.26 E-value=4.6 Score=37.43 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+++|.+-.++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4566777344567889999999986
No 145
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.22 E-value=7 Score=34.25 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++|.++ +..++||||||...
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456788775 56789999999753
No 146
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.29 E-value=6.2 Score=31.55 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
|-++.++. |. ...+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44566664 33 245667799999999875
No 147
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=50.49 E-value=5.9 Score=32.60 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++++.+-.|--.+ ..|++|||||..+
T Consensus 14 ~~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHHhccCCCEEE--EECCCCCCHHHHH
Confidence 3445555555443 4799999999877
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=50.31 E-value=5 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHhc-CC--CEEEEcccccCCCcceeec
Q psy9852 24 VIQAVIS-GS--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~-G~--n~ti~aYGqtgSGKTyTm~ 51 (241)
.++.++. |. ...+.-+|++|+|||..+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 3455554 33 2345668999999997753
No 149
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=49.51 E-value=8.9 Score=36.61 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.6
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.|+.+++|.+ +++..+||+|||..
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 4556678888 56678999999975
No 150
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=49.20 E-value=8.2 Score=33.39 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=18.6
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+..+++|.+ ++..++||+|||...
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556777877 456679999999764
No 151
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=48.96 E-value=8.4 Score=34.78 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.7
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+++|.+ +++.++||||||..
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHH
Confidence 445678877 46677999999985
No 152
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.50 E-value=4.5 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.2
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999865
No 153
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.32 E-value=5 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|+..|..|||||+...
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999997553
No 154
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=48.19 E-value=5.8 Score=33.85 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=17.4
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+++|.. .++..++||||||...
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 3567799999999874
No 155
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.80 E-value=4.6 Score=35.65 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.4
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 156
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=47.55 E-value=10 Score=35.48 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.++.++.+-+-.+++..+||||||..
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566655555678889999999985
No 157
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=47.08 E-value=12 Score=33.16 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.9
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+...|++|||||.++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666699999999886
No 158
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.07 E-value=9.2 Score=34.85 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|.+ ++...+||||||...
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677877 466789999999774
No 159
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.39 E-value=12 Score=36.48 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHhcCCC------EEEEcccccCCCcceee
Q psy9852 12 PQSEICTSALSDVIQAVISGSD------GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 12 ~Qe~Vy~~~v~plV~~vl~G~n------~ti~aYGqtgSGKTyTm 50 (241)
.|+++-+. +...+.....|.. +.++-||++|+|||+..
T Consensus 495 Gq~~a~~~-l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVA-VAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHH-HHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 34444443 3344444444543 37899999999999876
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=46.25 E-value=4.4 Score=32.00 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 10 i~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 10 FIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 445699999999764
No 161
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=46.10 E-value=4.7 Score=34.99 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=16.6
Q ss_pred HHhcCCCEEEEcccccCCCcceee
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 467899999999999999999766
No 162
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.10 E-value=9 Score=35.70 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=15.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.++-||++|+|||+.+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999876
No 163
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=46.02 E-value=6.6 Score=33.96 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=17.9
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ ++..++||+|||..
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455667776 46678999999976
No 164
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.88 E-value=9.5 Score=33.94 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=15.8
Q ss_pred HhcCCCEEEEcccccCCCcceeec
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+-.|... ..-|++|||||.++.
T Consensus 172 i~~G~~i--~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVI--VVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCE--EEEESSSSCHHHHHH
T ss_pred HhcCCEE--EEECCCCCCHHHHHH
Confidence 4456654 344999999998874
No 165
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=45.61 E-value=5.3 Score=33.67 Aligned_cols=24 Identities=8% Similarity=-0.068 Sum_probs=16.1
Q ss_pred HHHhcCCCEEEEcccccCCCcceeec
Q psy9852 26 QAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 26 ~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..++++.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 334445443 338999999998864
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=45.53 E-value=4.3 Score=32.09 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999875
No 167
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.39 E-value=14 Score=36.61 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++-+|++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 168
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.23 E-value=4.8 Score=34.47 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.9
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
+-++...|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 456778899999999876
No 169
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=45.15 E-value=11 Score=35.40 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.9
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+-||++|+|||+...
T Consensus 42 ~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CeeEeecCchHHHHHHHH
Confidence 367889999999998653
No 170
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.85 E-value=4.1 Score=36.32 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=14.8
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
|..++..|++|||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 445677899999999887
No 171
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.67 E-value=6.2 Score=30.22 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5778899999999754
No 172
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=44.27 E-value=5 Score=32.06 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.5
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999987
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=44.24 E-value=5 Score=32.57 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+.-.|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45567999999998775
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.24 E-value=11 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHhc-CCC--EEEEcccccCCCcceeec
Q psy9852 23 DVIQAVIS-GSD--GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~-G~n--~ti~aYGqtgSGKTyTm~ 51 (241)
+-++.++. |.. ..+..+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 44566665 443 467888999999997653
No 175
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=44.19 E-value=11 Score=35.93 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.++.+++|.+ ++..++||+|||....
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 4455677876 5677899999997653
No 176
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=44.13 E-value=5.3 Score=36.77 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.2
Q ss_pred HHhcCCCEEEEcccccCCCcceee
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.|++-.|...|++|+|||..+
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368899999999999999999865
No 177
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=44.11 E-value=7.2 Score=35.60 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=18.7
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+++|.+. +++.++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4567788775 55779999999986
No 178
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.07 E-value=16 Score=35.48 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=20.1
Q ss_pred HHHHHHhcCCC------EEEEcccccCCCcceee
Q psy9852 23 DVIQAVISGSD------GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G~n------~ti~aYGqtgSGKTyTm 50 (241)
..+.....|.. ..++-+|++|+|||+..
T Consensus 472 ~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 472 EAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 34444444543 57899999999999876
No 179
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=43.93 E-value=6.5 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|||||...
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998754
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=43.73 E-value=5.1 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555699999999865
No 181
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=43.68 E-value=15 Score=35.61 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred CeecceecC-CCChHHHHHHHHHHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 1 MFAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 1 tF~FD~VF~-~a~Qe~Vy~~~v~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
||.+... . .-.|..-++ .+++.+-.|... ....|.||||||++|.
T Consensus 1 ~~~~~~~-~~~~~q~~ai~----~l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 1 TFRYRGP-SPKGDQPKAIA----GLVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCCSC-CCCTTHHHHHH----HHHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCCC-CCCCCChHHHH----HHHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 3444444 5 677766554 456666667543 3456999999999996
No 182
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.53 E-value=6.6 Score=30.52 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|||||...
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999754
No 183
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=43.53 E-value=8.9 Score=32.51 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.2
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++.+|+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 578889999999998763
No 184
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=43.35 E-value=4.8 Score=38.62 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.0
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++..|++|||||+++.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 457888999999998864
No 185
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=43.15 E-value=7.7 Score=37.16 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++..|+.|+|||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45678999999999864
No 186
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=43.10 E-value=7.3 Score=34.17 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=18.3
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..+++| .++...+||+|||....
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34566777 44567899999998764
No 187
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.07 E-value=12 Score=34.02 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=17.8
Q ss_pred HHHHhcCCCEEEEcccccCCCcceee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.+++|.++ +...+||||||...
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHHH
Confidence 4455678774 56689999999773
No 188
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=42.93 E-value=13 Score=36.50 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
-++.|.||+.-|.+|||||.+.
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 3589999999999999999764
No 189
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=42.71 E-value=12 Score=35.69 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
++.+++|.|+ +..++||||||..
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHH
Confidence 4456678774 6678999999984
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=42.60 E-value=5.4 Score=32.21 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|...|++|||||..+.
T Consensus 10 ~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 45567999999998753
No 191
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=41.98 E-value=8.5 Score=34.76 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=17.6
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
++.++++.+ ++..++||+|||....
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 344556644 5667899999998763
No 192
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.68 E-value=6.7 Score=30.46 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778899999999865
No 193
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=41.51 E-value=4.3 Score=36.64 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.6
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
+..++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556789999999999987
No 194
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=41.51 E-value=5.3 Score=32.10 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.7
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 7 i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLK 22 (198)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556999999998763
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.17 E-value=5.9 Score=31.84 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999876
No 196
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=41.03 E-value=8.4 Score=29.99 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.2
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..+...|++|||||..+-
T Consensus 10 ~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356678999999998653
No 197
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.63 E-value=6.1 Score=34.50 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|||||.++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5566799999999988
No 198
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=40.60 E-value=6.7 Score=37.05 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.5
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..|..|||||+++.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567888999999999985
No 199
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=40.59 E-value=15 Score=36.56 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.3
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 589999999999999999775
No 200
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=40.52 E-value=6.7 Score=34.30 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+.-.|++|||||.++.
T Consensus 104 vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 45556999999999874
No 201
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=40.21 E-value=15 Score=36.54 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.1
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 589999999999999999765
No 202
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.02 E-value=17 Score=37.62 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.0
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 589999999999999999664
No 203
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=39.95 E-value=6.4 Score=30.85 Aligned_cols=16 Identities=38% Similarity=0.347 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+.-.|++|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999865
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.95 E-value=7.4 Score=29.81 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|+.|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667899999999764
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.20 E-value=13 Score=36.92 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=42.0
Q ss_pred ecceecC-CCChHHHHHHHHHHHHH-HHhcC----CCEEEEcccccCCCcceeecc---CCC-----------CCCCCCc
Q psy9852 3 AFDAIFS-DEPQSEICTSALSDVIQ-AVISG----SDGCLFCFGHARLGKSYTMVG---SPQ-----------SSATLGV 62 (241)
Q Consensus 3 ~FD~VF~-~a~Qe~Vy~~~v~plV~-~vl~G----~n~ti~aYGqtgSGKTyTm~G---~~~-----------~~~~~GI 62 (241)
.||.+-+ +.--+.+.+.+..|+.. .++.. -...|+-||++|||||+.+.- .-. .....|-
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~ 281 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhh
Confidence 4566666 44445555544444432 12322 234688999999999976531 110 1123455
Q ss_pred hHHHHHHHHHHHHhc
Q psy9852 63 IPSAISWLFRCISEQ 77 (241)
Q Consensus 63 ipr~~~~LF~~i~~~ 77 (241)
....+..+|+.....
T Consensus 282 ~~~~l~~vf~~a~~~ 296 (806)
T 1ypw_A 282 SESNLRKAFEEAEKN 296 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 666677777776543
No 206
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=38.81 E-value=21 Score=33.33 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999764
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=38.45 E-value=11 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHhcC-C--CEEEEcccccCCCcceee
Q psy9852 25 IQAVISG-S--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~G-~--n~ti~aYGqtgSGKTyTm 50 (241)
++.++.| . ...++-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555433 2 345677899999999884
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.36 E-value=6.5 Score=37.01 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=14.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999875
No 209
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=38.27 E-value=17 Score=37.35 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.1
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999764
No 210
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=38.26 E-value=17 Score=36.26 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.9
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999764
No 211
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=38.10 E-value=23 Score=31.97 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.7
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+-.|.-..|+..|+.|+|||...
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHH
Confidence 33577777888999999999876
No 212
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.04 E-value=14 Score=29.40 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=13.9
Q ss_pred CCEEEEcccccCCCccee
Q psy9852 32 SDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyT 49 (241)
-...|...|++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345667779999999865
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.04 E-value=8.2 Score=29.81 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||...
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=37.95 E-value=7.1 Score=30.73 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|.-.|++|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998764
No 215
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=37.94 E-value=9 Score=30.47 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999764
No 216
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=37.88 E-value=14 Score=36.63 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+....-.+..-.++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 333444555456788899999999765
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=37.86 E-value=8.1 Score=31.47 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=8.2
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 218
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=37.64 E-value=18 Score=37.07 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.5
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 589999999999999999876
No 219
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=37.45 E-value=16 Score=36.69 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=19.2
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 589999999999999999775
No 220
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=37.15 E-value=12 Score=35.05 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=18.0
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.++.+++|.++ +...+||+|||...
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34556788875 45569999999744
No 221
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=36.99 E-value=9.8 Score=28.79 Aligned_cols=16 Identities=19% Similarity=-0.081 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+.-|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999754
No 222
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.87 E-value=13 Score=31.59 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.3
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++.+|+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 478899999999998763
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.76 E-value=7.6 Score=32.93 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 568899999999999975
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=36.47 E-value=26 Score=32.31 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=14.4
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+..|++|+|||.|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456666999999999864
No 225
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=36.41 E-value=24 Score=35.26 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=19.1
Q ss_pred cCCCEEEEcccccCCCcceee
Q psy9852 30 SGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.|.||+.-|.+|+|||-+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 589999999999999999764
No 226
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.36 E-value=11 Score=29.22 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=13.0
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999764
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.02 E-value=7.4 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|+|||.++
T Consensus 4 i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 456799999999987
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=35.61 E-value=8 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.8
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+...|++|+|||.++.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999874
No 229
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.50 E-value=20 Score=37.05 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.4
Q ss_pred cCCCEEEEcccccCCCccee
Q psy9852 30 SGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 30 ~G~n~ti~aYGqtgSGKTyT 49 (241)
++.|.||+.-|.+|+|||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 58999999999999999965
No 230
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=35.21 E-value=9.5 Score=29.58 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999753
No 231
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=35.14 E-value=14 Score=28.45 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
..+-+|++|||||.-+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467899999998754
No 232
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=35.01 E-value=7.8 Score=31.65 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=11.7
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999765
No 233
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=34.80 E-value=9.3 Score=36.44 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=14.8
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++..|..|+|||+++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 456678999999999874
No 234
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=34.71 E-value=8.6 Score=34.61 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+...|++|||||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35666799999999988
No 235
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=34.68 E-value=10 Score=36.41 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.9
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..|..|||||+++.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35677888999999999986
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=34.57 E-value=11 Score=31.58 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.2
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367789999999864
No 237
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=34.33 E-value=25 Score=30.35 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=13.9
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|..-|++|||||..+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345566699999999866
No 238
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=34.27 E-value=7.4 Score=34.30 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.9
Q ss_pred HhcCCCEEEEcccccCCCcceeec
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+-.|.. +..-|++|||||.++.
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHHH
T ss_pred ccCCCE--EEEECCCCCCHHHHHH
Confidence 445654 4556999999998774
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=33.97 E-value=10 Score=30.21 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|++|||||..+
T Consensus 15 i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 15 LVVCGPSGVGKGTLI 29 (204)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999998754
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.96 E-value=16 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+...|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5666799999999987
No 241
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.86 E-value=13 Score=37.05 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 45778999999999863
No 242
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=33.75 E-value=7.4 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++-+|+.|+|||..+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999887
No 243
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=33.33 E-value=21 Score=36.57 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCcce
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSY 48 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTy 48 (241)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3456778876 5778899999994
No 244
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=33.29 E-value=12 Score=28.76 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=13.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|...|..|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677799999998754
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=33.16 E-value=9.6 Score=31.87 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.3
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...++-+|+.|+|||..+.
T Consensus 12 G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp CEEEEEECSTTSCHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHH
Confidence 3567788999999998773
No 246
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=32.76 E-value=19 Score=31.32 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=18.6
Q ss_pred HHHHHhcCC-CEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGS-DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~-n~ti~aYGqtgSGKTyTm 50 (241)
+...+-.|. .-.++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 344444554 335888999999998764
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=32.69 E-value=12 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||...
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=32.64 E-value=9.8 Score=29.83 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=13.6
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556799999999876
No 249
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=32.50 E-value=10 Score=35.83 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.8
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...++-+|++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999999864
No 250
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.45 E-value=23 Score=26.80 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHhc-CCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVIS-GSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~-G~n~ti~aYGqtgSGKTyTm~ 51 (241)
+...++. -....|...|..|+|||..+.
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHH
Confidence 3344444 456778899999999997663
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=32.43 E-value=14 Score=28.79 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=14.0
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|...|..|||||...
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345677799999999754
No 252
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=32.38 E-value=11 Score=28.97 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||.-.
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999998643
No 253
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=32.15 E-value=15 Score=36.63 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.3
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++..|+.|+|||+|+.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45678999999999864
No 254
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.02 E-value=12 Score=29.40 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999754
No 255
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.00 E-value=12 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||...
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 256
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.96 E-value=17 Score=34.58 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..+-..+-.|. .++-+|++|+|||..+.
T Consensus 51 ~~l~~~i~~g~--~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 51 EVIKTAANQKR--HVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHHHTTC--CEEEECCTTSSHHHHHH
T ss_pred hhccccccCCC--EEEEEeCCCCCHHHHHH
Confidence 34444455564 56779999999998764
No 257
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=31.85 E-value=12 Score=28.49 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.4
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||.-.
T Consensus 5 I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 5 IFMVGARGCGMTTVG 19 (173)
T ss_dssp EEEESCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999753
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=31.82 E-value=10 Score=33.17 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.5
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..|+..|++|+|||.++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 356677999999998874
No 259
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=31.46 E-value=21 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=17.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.|..+++|.+ ++..++||||||..
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677754 67789999999953
No 260
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.21 E-value=12 Score=28.78 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|+.|||||...
T Consensus 7 i~i~G~~GsGKsTla 21 (175)
T 1via_A 7 IVFIGFMGSGKSTLA 21 (175)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 666799999999753
No 261
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=31.20 E-value=16 Score=36.73 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..+++|.++ +..++||||||.+..
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 45566788774 567899999998744
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=31.06 E-value=11 Score=31.45 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 445699999999765
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=30.86 E-value=27 Score=30.80 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHhcC---CCEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISG---SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G---~n~ti~aYGqtgSGKTyTm 50 (241)
+-++.++.| ....+..+|++|||||.-+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 556777754 2356778899999998754
No 264
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.85 E-value=17 Score=28.37 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=15.2
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
+..-.|.-.|..|||||...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34456777899999999754
No 265
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=30.76 E-value=16 Score=33.15 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999874
No 266
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=30.74 E-value=15 Score=30.83 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=17.4
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
-.|+...|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 4588889999999999999766
No 267
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.64 E-value=24 Score=30.25 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
+-++.++. |+ ...+..||++|+|||..+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 56777775 33 356888999999998765
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.58 E-value=13 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=9.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||...
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999998753
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.28 E-value=36 Score=31.49 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
...|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 3567778999999999975
No 270
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=30.11 E-value=24 Score=34.57 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++.|.+ ++..++||||||.+..
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~~ 281 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVSI 281 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHHH
Confidence 4556678877 4667899999997643
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.07 E-value=28 Score=30.55 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHhc-CC--CEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVIS-GS--DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~-G~--n~ti~aYGqtgSGKTyTm~ 51 (241)
+-++.++. |+ ...+..||++|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 45677775 44 3567889999999997654
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.01 E-value=13 Score=29.34 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||...
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999754
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=29.73 E-value=12 Score=29.81 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=12.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|--.|++|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999765
No 274
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=29.58 E-value=14 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=12.1
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+..|..|||||..
T Consensus 5 I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 5 AVLVGLPGSGKSTI 18 (184)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999975
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=29.42 E-value=12 Score=30.91 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=12.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.+...|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999998754
No 276
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.12 E-value=15 Score=27.75 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.9
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|+-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999975
No 277
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.09 E-value=13 Score=33.10 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.2
Q ss_pred HHhcCCCEEEEcccccCCCcceeec
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..|+...|...|.+|+|||..+.
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLIN 55 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHHH
Confidence 3677999999999999999997653
No 278
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=29.07 E-value=14 Score=28.75 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|..|||||+-.
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
No 279
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=28.91 E-value=14 Score=30.09 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.7
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
.+-.|..|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 466799999999976
No 280
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.65 E-value=18 Score=32.86 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=15.8
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+++|.+ ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345554 577899999999884
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=28.62 E-value=16 Score=30.03 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=13.8
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|...|++|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677799999999865
No 282
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.57 E-value=18 Score=33.02 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=12.8
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 456779999999987
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=28.41 E-value=16 Score=28.96 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.1
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|...|+.|||||..
T Consensus 31 ~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 31 HVVVMGVSGSGKTTI 45 (200)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455669999999975
No 284
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.18 E-value=17 Score=34.99 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=15.6
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+++|.| ++..++||||||...
T Consensus 37 i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 37 VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HTTCSC--EEEECSSHHHHHHHH
T ss_pred HhCCCc--EEEEcCCccHHHHHH
Confidence 345655 567789999999765
No 285
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.72 E-value=15 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-.|..|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999753
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=27.67 E-value=31 Score=31.04 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.0
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+..+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36777899999999765
No 287
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=27.44 E-value=15 Score=35.80 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred HhcCCCEEEEcccccCCCcceeeccCCCCCCCCCch----HHHHHHHHHHHHhc
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVI----PSAISWLFRCISEQ 77 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm~G~~~~~~~~GIi----pr~~~~LF~~i~~~ 77 (241)
.++|. .++..|+||||||+.+.-.-.. ...|++ --.+.++++.+...
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~al~~l~~-~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHAIQKYFS-AKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHHHHHHHH-SSSEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCC--EEEEEcCCCCCHHHHHHHHHHh-cCCeEEEeCHHHHHHHHHHHHHhc
Confidence 34554 4688899999999843211000 012442 23556777777654
No 288
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.40 E-value=19 Score=32.15 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.++.||++|+|||+-.
T Consensus 125 viLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEECSCSSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999765
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.27 E-value=16 Score=28.75 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.5
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|+..|..|||||+-.
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35777899999999754
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.25 E-value=16 Score=29.61 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+-.
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999754
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.16 E-value=16 Score=28.34 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-.|..|||||+-.
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677799999999754
No 292
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=27.15 E-value=17 Score=29.41 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.9
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
++.+|.++||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999854
No 293
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=27.05 E-value=16 Score=33.93 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.2
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+.||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999998754
No 294
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=26.97 E-value=20 Score=32.55 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=17.4
Q ss_pred HHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
|+.++.|.+ ++..++||+|||.+..
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 334445544 4667999999999864
No 295
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.79 E-value=16 Score=29.25 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+-.
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998653
No 296
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.73 E-value=35 Score=29.28 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=13.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|--.|++|||||..+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44555699999999876
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=26.70 E-value=17 Score=28.97 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998754
No 298
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=26.68 E-value=30 Score=29.98 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+..+...+-.|..-..+-||+.|+|||.+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 334444455566557888999999998655
No 299
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.54 E-value=29 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHhcC-C--CEEEEcccccCCCcceee
Q psy9852 23 DVIQAVISG-S--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 23 plV~~vl~G-~--n~ti~aYGqtgSGKTyTm 50 (241)
+-++.++.| + ...+..||++|+|||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 556777753 3 245788999999998765
No 300
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.42 E-value=12 Score=30.38 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.8
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
..+-||+.|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46678999999997773
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=26.23 E-value=14 Score=30.38 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=11.3
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
.-.|++|||||..+
T Consensus 34 ~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 34 SIIGASGSGKSTLL 47 (224)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44599999999765
No 302
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=26.03 E-value=15 Score=33.14 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345699999999876
No 303
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=25.99 E-value=42 Score=34.73 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCEEEEcccccCCCccee
Q psy9852 21 LSDVIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 21 v~plV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..++...-.|....++..|+||+|||..
T Consensus 612 i~~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 612 INAVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 33444444557755678899999999964
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.97 E-value=17 Score=28.59 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.3
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|...|..|||||...
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 566799999999754
No 305
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=25.95 E-value=29 Score=35.73 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHhcCCCEEEEcccccCCCccee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
.+..+++|.+ +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4556778876 57788999999983
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.79 E-value=46 Score=28.67 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.2
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.+...|..|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999998773
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=25.70 E-value=19 Score=30.04 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=13.6
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35778899999999753
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.56 E-value=18 Score=28.13 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.4
Q ss_pred EEcccccCCCccee
Q psy9852 36 LFCFGHARLGKSYT 49 (241)
Q Consensus 36 i~aYGqtgSGKTyT 49 (241)
|.--|..|||||..
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 55679999999964
No 309
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=25.55 E-value=42 Score=31.34 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 22 SDVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 22 ~plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
..+.+.+.+|.++ ++-.+||+|||.+..
T Consensus 13 ~~v~~~l~~~~~~--~~~a~TGtGKT~~~l 40 (551)
T 3crv_A 13 DKVIEGLRNNFLV--ALNAPTGSGKTLFSL 40 (551)
T ss_dssp HHHHHHHHTTCEE--EEECCTTSSHHHHHH
T ss_pred HHHHHHHHcCCcE--EEECCCCccHHHHHH
Confidence 3344555677654 555689999988753
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.41 E-value=20 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=12.4
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|+..|..|||||.-
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999874
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=25.40 E-value=16 Score=28.15 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCEEEEcccccCCCcceee
Q psy9852 32 SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm 50 (241)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457889999999999766
No 312
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=25.32 E-value=18 Score=34.82 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=15.4
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.+|. .++..++||||||...
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHH
Confidence 34444 4678899999999654
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=25.26 E-value=29 Score=30.72 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHhc--CC--CEEEEcccccCCCcceee
Q psy9852 22 SDVIQAVIS--GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 22 ~plV~~vl~--G~--n~ti~aYGqtgSGKTyTm 50 (241)
.+-++.++. |+ ...+..||+.|||||..+
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 355667776 33 345788899999999774
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=25.25 E-value=20 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=14.6
Q ss_pred CCEEEEcccccCCCcceee
Q psy9852 32 SDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm 50 (241)
+...|+-.|+||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3455788899999998654
No 315
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=25.24 E-value=11 Score=33.89 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=20.8
Q ss_pred cchhhhhhhhccccccccchhhHHHHHHhhHHH
Q psy9852 196 DLETLEQYCKNDFNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
.|..+.+++..=.....++-||.++|+|+=+.-
T Consensus 282 SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqds 314 (359)
T 1x88_A 282 SLLTLGRVITALVERTPHVPYRESKLTRILQDS 314 (359)
T ss_dssp HHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGG
T ss_pred HHHHHHHHHHHHhcCCCCCccccchHHHHHHHH
Confidence 666666665553334567777777777765543
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=25.23 E-value=20 Score=28.59 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=12.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|.--|++|||||.-.
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999765
No 317
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=25.19 E-value=18 Score=28.75 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998754
No 318
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=25.19 E-value=21 Score=31.91 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.7
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|+..|+||||||.-
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578889999999863
No 319
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=25.03 E-value=16 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+--.|++|||||..+-
T Consensus 32 ~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLR 47 (381)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCchHHHHHH
Confidence 3456999999998753
No 320
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=24.94 E-value=16 Score=32.79 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=12.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 32 ~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLL 47 (359)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEEcCCCchHHHHHH
Confidence 3456999999998764
No 321
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=24.91 E-value=22 Score=31.56 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.2
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
-.|+..|++|||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578889999999864
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=24.82 E-value=19 Score=29.35 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=13.9
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+-.|..|||||+-.
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999754
No 323
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=24.74 E-value=15 Score=35.32 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.9
Q ss_pred EEEEcccccCCCcceeec
Q psy9852 34 GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm~ 51 (241)
..++..|.||||||..+.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457899999999998754
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.71 E-value=19 Score=28.14 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.0
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||.-.
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998754
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=24.70 E-value=21 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.1
Q ss_pred CCCEEEEcccccCCCcceee
Q psy9852 31 GSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 31 G~n~ti~aYGqtgSGKTyTm 50 (241)
.....|+..|..|||||...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33446788899999999754
No 326
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=24.66 E-value=25 Score=31.11 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=12.9
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
...+-+|++|+|||.-+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34567899999998544
No 327
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.65 E-value=16 Score=30.52 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999866
No 328
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.63 E-value=26 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
...+-+|++|||||.-+
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34567899999998655
No 329
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.55 E-value=17 Score=31.28 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=11.9
Q ss_pred EcccccCCCcceeec
Q psy9852 37 FCFGHARLGKSYTMV 51 (241)
Q Consensus 37 ~aYGqtgSGKTyTm~ 51 (241)
.-.|++|||||..+-
T Consensus 38 ~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 38 AILGGNGVGKSTLFQ 52 (275)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 446999999998763
No 330
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.54 E-value=17 Score=30.33 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 35 ~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLS 50 (240)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999998763
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=24.51 E-value=16 Score=31.82 Aligned_cols=17 Identities=29% Similarity=0.171 Sum_probs=13.4
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-.|--.|++|||||..+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 34555699999999877
No 332
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=24.47 E-value=16 Score=35.49 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred CCEEEEcccccCCCcceeec
Q psy9852 32 SDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 32 ~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+..++..|..|||||+++.
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 34567788999999999985
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=24.44 E-value=17 Score=31.95 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|...|++|+|||.++.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999998874
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=24.38 E-value=17 Score=32.65 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 44 ~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 44 VGLLGPSGSGKTTILR 59 (355)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999998763
No 335
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=24.37 E-value=17 Score=30.63 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 36 ~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLIN 51 (257)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999998763
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.32 E-value=19 Score=28.90 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||.-.
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999998743
No 337
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.19 E-value=27 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=13.8
Q ss_pred HHHHHhcCCCEEEEcccccCCCcc
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKS 47 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKT 47 (241)
+|.........-.|-||+-|||||
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKS 34 (195)
T ss_dssp --------CCEEEEEEECTTSCHH
T ss_pred ccccCCCCceEEEEEECCCCCcHH
Confidence 344444444557889999999999
No 338
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=24.18 E-value=29 Score=35.78 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=17.3
Q ss_pred HHHHhcCCCEEEEcccccCCCccee
Q psy9852 25 IQAVISGSDGCLFCFGHARLGKSYT 49 (241)
Q Consensus 25 V~~vl~G~n~ti~aYGqtgSGKTyT 49 (241)
+..+..|.+ ++..++||||||..
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 444577766 57789999999965
No 339
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=24.11 E-value=17 Score=30.23 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 34 ~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999865
No 340
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=24.07 E-value=17 Score=32.72 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 32 ~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 32 MILLGPSGCGKTTTLR 47 (372)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCcHHHHHHH
Confidence 3456999999998763
No 341
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.02 E-value=17 Score=30.74 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.4
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
.-.|++|||||..+
T Consensus 36 ~liG~nGsGKSTLl 49 (262)
T 1b0u_A 36 SIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44599999999865
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=24.02 E-value=17 Score=32.64 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 32 ~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 32 MALLGPSGSGKSTLLY 47 (362)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCchHHHHHH
Confidence 3456999999998764
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=23.96 E-value=22 Score=28.08 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|.-.|..|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556699999999764
No 344
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.93 E-value=16 Score=30.12 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.5
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
.-.|++|||||..+
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999876
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=23.84 E-value=20 Score=27.56 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=11.7
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|.-.|..|||||.-.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999643
No 346
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.81 E-value=57 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=18.9
Q ss_pred HhcCCCEEEEcccccCCCcceee
Q psy9852 28 VISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 28 vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
++.-....|...|..|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45566778999999999999766
No 347
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.62 E-value=18 Score=31.73 Aligned_cols=17 Identities=35% Similarity=0.553 Sum_probs=13.5
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
-++.-.|++|||||.-+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 34566799999999866
No 348
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=23.62 E-value=18 Score=30.70 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 36 ~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999998663
No 349
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=23.62 E-value=22 Score=31.58 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.7
Q ss_pred EEEEcccccCCCccee
Q psy9852 34 GCLFCFGHARLGKSYT 49 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyT 49 (241)
..|+..|+||||||.-
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 3567789999999854
No 350
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=23.57 E-value=16 Score=34.48 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34688899999999754
No 351
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=23.52 E-value=23 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 352
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=23.46 E-value=24 Score=29.55 Aligned_cols=17 Identities=18% Similarity=-0.033 Sum_probs=13.7
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..+..+|++|||||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35677899999999764
No 353
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=23.25 E-value=18 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=12.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 38 ~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999998653
No 354
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=23.12 E-value=23 Score=31.58 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=12.5
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4566899999998643
No 355
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=23.06 E-value=30 Score=35.28 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHhcCCCEEEEcccccCCCcceee
Q psy9852 27 AVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 27 ~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+.+|.+ ++..++||||||...
T Consensus 97 ~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 97 CIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHHH
Confidence 3455655 677889999999753
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=23.05 E-value=18 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=12.6
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 40 ~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLR 55 (372)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 3456999999998764
No 357
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=23.02 E-value=49 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCEEEEcccccCCCcceeec
Q psy9852 23 DVIQAVISGSDGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 23 plV~~vl~G~n~ti~aYGqtgSGKTyTm~ 51 (241)
.+...+.+|.++ ++-.+||+|||.+..
T Consensus 18 ~v~~~~~~~~~~--~~~a~TGtGKT~~~l 44 (540)
T 2vl7_A 18 EAINALKHGKTL--LLNAKPGLGKTVFVE 44 (540)
T ss_dssp HHHHHHHTTCEE--EEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHHHHHH
Confidence 334455677654 555689999997653
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.01 E-value=21 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=20.7
Q ss_pred EEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 36 LFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
|+-.|+.||||+.-..=-. ...|+.+-...+||+.
T Consensus 3 Iil~GpPGsGKgTqa~~La---~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLA---KEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH---HHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH---HHHCCeEEcHHHHHHH
Confidence 6678999999975321000 1245655556666654
No 359
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=22.94 E-value=12 Score=33.68 Aligned_cols=33 Identities=18% Similarity=-0.033 Sum_probs=16.5
Q ss_pred cchhhhhhhhcc-ccccccchhhHHHHHHhhHHH
Q psy9852 196 DLETLEQYCKND-FNQSTWRNDRLEQLKREKRAL 228 (241)
Q Consensus 196 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 228 (241)
.|..+++++..= -++..++.||.++|+|+=+.-
T Consensus 289 SL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqds 322 (358)
T 2nr8_A 289 SLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDS 322 (358)
T ss_dssp HHHHHHHHHHHHHC-----CCGGGSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHh
Confidence 566666655442 123456777777777665443
No 360
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.82 E-value=19 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999866
No 361
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=22.80 E-value=24 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999766
No 362
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.80 E-value=19 Score=30.46 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 49 ~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 49 CALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999865
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.66 E-value=22 Score=27.50 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=11.7
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|..-|..|||||.-.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999998654
No 364
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.61 E-value=19 Score=30.63 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 53 ~~liG~NGsGKSTLl 67 (263)
T 2olj_A 53 VVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 345599999999876
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=22.61 E-value=19 Score=28.76 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|.+|||||..+
T Consensus 7 i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455689999999866
No 366
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=22.57 E-value=22 Score=29.50 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=20.4
Q ss_pred EEEcccccCCCcceeeccCCCCCCCCCchHHHHHHHHHH
Q psy9852 35 CLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRC 73 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~G~~~~~~~~GIipr~~~~LF~~ 73 (241)
.|+..|+.||||+.-..=-. ...|+..-...+||+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~---~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV---QKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH---HHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---HHHCCceEcHHHHHHH
Confidence 47788999999975321000 1235544455555554
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.56 E-value=19 Score=30.62 Aligned_cols=15 Identities=27% Similarity=0.229 Sum_probs=12.0
Q ss_pred EcccccCCCcceeec
Q psy9852 37 FCFGHARLGKSYTMV 51 (241)
Q Consensus 37 ~aYGqtgSGKTyTm~ 51 (241)
--.|++|||||..+-
T Consensus 41 ~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 41 AIIGPNGAGKSTLLR 55 (266)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCCCcHHHHHH
Confidence 346999999998763
No 368
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.42 E-value=24 Score=29.63 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.1
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|.+|||||.-.
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998743
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.34 E-value=28 Score=26.76 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.2
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|..|||||...
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999998753
No 370
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=22.28 E-value=20 Score=36.87 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.1
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
.+...+||||||.+++
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 4566799999999984
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=22.25 E-value=42 Score=29.49 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=12.6
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|---|++|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455599999999876
No 372
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.25 E-value=20 Score=30.39 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=12.2
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 44 ~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLR 59 (256)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3455999999998763
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.20 E-value=22 Score=28.36 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||.-.
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999998643
No 374
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=22.08 E-value=25 Score=28.35 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|++|+|||.-+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998754
No 375
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.05 E-value=27 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=17.9
Q ss_pred HHHHhc-CC--CEEEEcccccCCCcceee
Q psy9852 25 IQAVIS-GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 25 V~~vl~-G~--n~ti~aYGqtgSGKTyTm 50 (241)
++.++. |+ ...++.+|.+|+|||.-+
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 455565 43 345778899999999543
No 376
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=22.03 E-value=20 Score=29.60 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.4
Q ss_pred EcccccCCCcceee
Q psy9852 37 FCFGHARLGKSYTM 50 (241)
Q Consensus 37 ~aYGqtgSGKTyTm 50 (241)
.-.|++|||||..+
T Consensus 38 ~i~G~nGsGKSTLl 51 (229)
T 2pze_A 38 AVAGSTGAGKTSLL 51 (229)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45599999999766
No 377
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=21.99 E-value=23 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=12.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|.+|||||...
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999654
No 378
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=21.82 E-value=21 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=12.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 34 ~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLD 49 (253)
T ss_dssp EEEECCSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999998763
No 379
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=21.78 E-value=31 Score=30.59 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
++-.|++|||||.-+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 446899999999654
No 380
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=21.66 E-value=20 Score=30.35 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=11.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 49 ~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999865
No 381
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=21.64 E-value=20 Score=29.95 Aligned_cols=15 Identities=27% Similarity=0.096 Sum_probs=11.9
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 32 ~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 32 HALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999766
No 382
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=21.49 E-value=50 Score=31.58 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=17.1
Q ss_pred HHHHHhcCCCEEEEcccccCCCcceee
Q psy9852 24 VIQAVISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 24 lV~~vl~G~n~ti~aYGqtgSGKTyTm 50 (241)
+.+.+.+|.+ +++-.+||+|||...
T Consensus 15 v~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 15 LRSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp HHHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCCHHHHH
Confidence 3344455655 567779999999764
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.42 E-value=24 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=12.7
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+..|..|||||+-.
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999753
No 384
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.41 E-value=19 Score=35.94 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=28.8
Q ss_pred EEEcccccCCCcceeec---cCCC-----------CCCCCCchHHHHHHHHHHHHhcc
Q psy9852 35 CLFCFGHARLGKSYTMV---GSPQ-----------SSATLGVIPSAISWLFRCISEQK 78 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~---G~~~-----------~~~~~GIipr~~~~LF~~i~~~~ 78 (241)
.|+-||+.|+|||+..- +... -....|--.+.+..+|+......
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 570 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC
Confidence 48899999999986542 1100 01134555788999999887653
No 385
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.33 E-value=21 Score=30.36 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.1
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 33 ~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 33 VIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 386
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=21.31 E-value=21 Score=37.18 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.5
Q ss_pred CEEEEcccccCCCcceeec
Q psy9852 33 DGCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm~ 51 (241)
+..++.-|..|||||++|.
T Consensus 23 ~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH
Confidence 6678888999999999985
No 387
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.25 E-value=21 Score=30.59 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 50 ~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLN 65 (279)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999998663
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=21.19 E-value=21 Score=30.37 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=12.3
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 48 ~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAA 63 (271)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999997653
No 389
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.15 E-value=23 Score=32.51 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.|...|++|+|||++..
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999999874
No 390
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.15 E-value=27 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.1
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|.+|+|||.-+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45778899999999865
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=21.09 E-value=34 Score=33.43 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=13.7
Q ss_pred EEEcccccCCCcceeec
Q psy9852 35 CLFCFGHARLGKSYTMV 51 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm~ 51 (241)
.++..++||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46788999999996553
No 392
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=21.05 E-value=15 Score=32.74 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.5
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 29 ~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 29 FVILGPTGAGKTLFLE 44 (348)
T ss_dssp EEEECCCTHHHHHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 3456999999998764
No 393
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=21.00 E-value=22 Score=29.99 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=12.4
Q ss_pred EEcccccCCCcceeec
Q psy9852 36 LFCFGHARLGKSYTMV 51 (241)
Q Consensus 36 i~aYGqtgSGKTyTm~ 51 (241)
+.-.|++|||||..+-
T Consensus 29 ~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLA 44 (249)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999998763
No 394
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=20.79 E-value=21 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHhcCCC--EEEEcccccCCCcceeec
Q psy9852 24 VIQAVISGSD--GCLFCFGHARLGKSYTMV 51 (241)
Q Consensus 24 lV~~vl~G~n--~ti~aYGqtgSGKTyTm~ 51 (241)
.++.+.-|.. ..+...|++|+|||..+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 3455554443 356677999999998764
No 395
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.68 E-value=28 Score=33.16 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.9
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|+-+|++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 6889999999998654
No 396
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=20.62 E-value=20 Score=27.95 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.0
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|...|..|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45677899999999766
No 397
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.60 E-value=25 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=15.2
Q ss_pred hcCCCEEEEcccccCCCcceee
Q psy9852 29 ISGSDGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 29 l~G~n~ti~aYGqtgSGKTyTm 50 (241)
.+|. .++..++||||||...
T Consensus 44 ~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTC--CEEEECCTTSCHHHHH
T ss_pred cCCC--cEEEEcCCCCcHHHHH
Confidence 4444 4677889999999875
No 398
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=20.54 E-value=31 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.4
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4455799999998754
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=20.52 E-value=28 Score=27.73 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=12.3
Q ss_pred EEEcccccCCCccee
Q psy9852 35 CLFCFGHARLGKSYT 49 (241)
Q Consensus 35 ti~aYGqtgSGKTyT 49 (241)
.|.--|..|||||..
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466779999999874
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=20.46 E-value=22 Score=32.26 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=11.8
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|++|||||..+
T Consensus 50 ~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 345599999999875
No 401
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.42 E-value=32 Score=29.65 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.8
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
...-+|++|||||.-|
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 3456799999999776
No 402
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=20.32 E-value=23 Score=29.13 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|---|++|||||..+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444599999999876
No 403
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=20.30 E-value=26 Score=27.51 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=13.0
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|..-|..|||||.-.
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998754
No 404
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=20.25 E-value=38 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHHhc--CC--CEEEEcccccCCCcceee
Q psy9852 21 LSDVIQAVIS--GS--DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 21 v~plV~~vl~--G~--n~ti~aYGqtgSGKTyTm 50 (241)
..+-++.++. |+ ...+..+|++|||||..+
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 3456777776 43 356888999999999764
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=20.19 E-value=23 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
+.-.|.+|||||..+
T Consensus 9 i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 9 LAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 445689999999876
No 406
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=20.16 E-value=30 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.3
Q ss_pred EEEcccccCCCcceee
Q psy9852 35 CLFCFGHARLGKSYTM 50 (241)
Q Consensus 35 ti~aYGqtgSGKTyTm 50 (241)
.|...|..|+|||.-+
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999765
No 407
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=20.13 E-value=26 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.2
Q ss_pred CEEEEcccccCCCcceee
Q psy9852 33 DGCLFCFGHARLGKSYTM 50 (241)
Q Consensus 33 n~ti~aYGqtgSGKTyTm 50 (241)
...|+..|..|||||.-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346788899999998653
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=20.11 E-value=26 Score=28.32 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.0
Q ss_pred EEcccccCCCcceee
Q psy9852 36 LFCFGHARLGKSYTM 50 (241)
Q Consensus 36 i~aYGqtgSGKTyTm 50 (241)
|+..|..|||||.-.
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999998753
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=20.00 E-value=29 Score=27.61 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=13.2
Q ss_pred EEEEcccccCCCcceee
Q psy9852 34 GCLFCFGHARLGKSYTM 50 (241)
Q Consensus 34 ~ti~aYGqtgSGKTyTm 50 (241)
..|+..|..|||||..+
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45666799999998754
Done!