RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9852
(241 letters)
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 81.9 bits (203), Expect = 2e-18
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F D + D Q + + DV+ + G +G + C+G GK+YTM+G+ ++ G
Sbjct: 73 FKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRG 132
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
++P A+ +FR I E+ +VR S +EI ++ + DLLST
Sbjct: 133 ILPRALQQVFRMIEERPTHA---ITVRVSYLEI--YNESLFDLLSTLPYVG 178
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 79.5 bits (197), Expect = 1e-17
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+AFD +F S Q ++ +++ V+ G +G +F +G GK++TM G +
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
G+IP + +F I F ++ S EI ++DLL
Sbjct: 106 GIIPRIVQDIFNYIYSMDENL--EFHIKVSYFEI--YLDKIRDLLDV 148
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 79.5 bits (197), Expect = 2e-17
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
F FDA++ + Q E+ ++ +V+ G +G +F +G GK+YTM G
Sbjct: 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK 128
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
GVIP++ +F IS +++ ++ VRAS +EI + ++DLLS +
Sbjct: 129 RGVIPNSFDHIFTHISRSQNQ---QYLVRASYLEI--YQEEIRDLLSKDQTKR 176
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 77.6 bits (192), Expect = 5e-17
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FD +F +E + + +I + I G +G +F +G GK+YTM+GS L
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDH---L 102
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRL 116
GVIP AI +F+ I + + F +R S +EI ++ + DLL K +
Sbjct: 103 GVIPRAIHDIFQKIKKFPDR---EFLLRVSYMEI--YNETITDLLCGTQKMKPLII 153
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 77.7 bits (192), Expect = 6e-17
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
++ FD +F + Q ++ A ++ V++G +G +F +G GK++TM G S
Sbjct: 52 VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK 111
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
G+IP ++ +F I + F ++ S EI ++DLL
Sbjct: 112 QGIIPRIVNDIFNHIYAMEVNL--EFHIKVSYYEI--YMDKIRDLLDV 155
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 76.1 bits (188), Expect = 2e-16
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
F FDA++ I ++ +I AV+ G + +F +G GK++TM G+ +
Sbjct: 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP-- 114
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
G IP++ LF I+ F V S +E+ ++ ++DL+ +
Sbjct: 115 -GAIPNSFKHLFDAINSSSSNQ--NFLVIGSYLEL--YNEEIRDLIKNNTK 160
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 76.1 bits (188), Expect = 2e-16
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP---QSS 57
F FD F + Q E+ + + ++ ++ G +G GKSY+M +P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 58 ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
LG++P A+ +F ++ ++ V AS IEI ++ DLL +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEI--YNEKPFDLLGS 170
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 75.3 bits (186), Expect = 4e-16
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
F FD +F QS+I ++ + +++G +G +F +G GKSYTM+G+
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 60 L-GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLST 107
GVIP + +F I ++VR S +EI + ++DLL+
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANI--EYTVRVSYMEI--YMERIRDLLAP 152
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 74.6 bits (184), Expect = 1e-15
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+ FDA + Q +I ++ +++ ++ G + + +G GK++TM+GSP+
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP--- 123
Query: 61 GVIPSAISWLFRCISEQKHKT-GARFSVRASAIEISSSSQHVKDLLST 107
GVIP A+ L + E+ + SV S +EI + V DLL
Sbjct: 124 GVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEI--YQEKVLDLLDP 169
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 73.8 bits (182), Expect = 1e-15
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FDA+F QSE+ ++++ ++G + + +G GK++TM+GS
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
GV+ + L++C+ E K + S S +E+ ++ ++DLL
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEK--ICSTAVSYLEV--YNEQIRDLLV 172
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 73.4 bits (181), Expect = 2e-15
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+D +F + Q ++ ++Q+ + G + C+F +G GK++T+ G+ +
Sbjct: 49 HMYDRVFDGNATQDDV-FEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSN---P 104
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
G+ P A+S LFR + + +K FS++A +E+ + DLL +
Sbjct: 105 GLTPRAMSELFRIMKKDSNKF--SFSLKAYMVEL--YQDTLVDLLLPKQAKR 152
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 72.7 bits (179), Expect = 4e-15
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F+FD +F QS+I S +IQ+ + G + C+F +G GK+YTM G P+S +
Sbjct: 108 FSFDQVFHPLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES---V 163
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLC 117
GVIP + LF I ++ G + ++A+ +EI ++ + DLLS R+
Sbjct: 164 GVIPRTVDLLFDSIRGYRNL-GWEYEIKATFLEI--YNEVLYDLLSNEQKDMEIRMA 217
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 71.9 bits (177), Expect = 6e-15
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FD IF + ++ + ++Q+ + G + C+F +G GK++TM+
Sbjct: 54 FKFDKIFDQQDTNVDV-FKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----- 107
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
G+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K LK
Sbjct: 108 GIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNKEDTSIGLK 164
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 71.8 bits (177), Expect = 7e-15
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F D +FS Q ++ + ++ + I G + C+F +G GK+YTM G+ +
Sbjct: 50 FELDKVFSPQASQQDV-FQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NP 105
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
G+ A+ LF + E+ +++ SA EI ++ ++DLL K
Sbjct: 106 GINQRALQLLFSEVQEKAS--DWEYTITVSAAEI--YNEVLRDLLGKEPQEK 153
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 71.9 bits (177), Expect = 7e-15
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FD IF EI + ++Q+ + G + C+F +G GK+YTM+ +
Sbjct: 55 FQFDMIFEPSHTNKEI-FEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----- 108
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
G+IP +S +F+ + K + G + + IEI ++ + DLL + +
Sbjct: 109 GMIPMTLSHIFKWTANLKER-GWNYEMECEYIEI--YNETILDLLRDFKSHDNIDEILDS 165
Query: 121 RFH 123
+ H
Sbjct: 166 QKH 168
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 71.4 bits (176), Expect = 9e-15
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT- 59
F F + D Q + + + +++A G + +F +G GK+YTM + +S
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111
Query: 60 --LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRL 116
G++P A++ F+ I E V S +E+ + +DLL + + +L
Sbjct: 112 DEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEV--YKEEFRDLLEVGTASRDIQL 165
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 71.5 bits (176), Expect = 1e-14
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 55 --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+ G+IP + +F +++ + FSV+ S +EI ++ + DLL+ S+
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDNGTE----FSVKVSLLEI--YNEELFDLLNPSSDVS 170
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 71.1 bits (175), Expect = 2e-14
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F FD IF + ++ + ++Q+ + G + +F +G GK++TM+
Sbjct: 110 FKFDKIFDQQDTNVDV-FKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----- 163
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
G+IPS IS +F I++ K K G + V A IEI ++++ DLL + +N K LK
Sbjct: 164 GIIPSTISHIFNWINKLKTK-GWDYKVNAEFIEI--YNENIVDLLRSDNNNKEDTSIGLK 220
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 70.7 bits (174), Expect = 2e-14
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP------ 54
F FD F + Q ++ + +S +I+ V++G + +F +G GK++TMVG+
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKS 128
Query: 55 --QSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+ + +G+IP A+S LF + + +++R S +E+ ++ + DLLST K
Sbjct: 129 SWEDDSDIGIIPRALSHLFDELRMME----VEYTMRISYLEL--YNEELCDLLSTDDTTK 182
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 70.0 bits (172), Expect = 3e-14
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 2 FAFDAIFS-DEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
F+FD +F Q E+ ++ ++Q+ + G C+F +G GK++TM G P L
Sbjct: 85 FSFDRVFPPGSGQDEV-FEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 61 -GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSN 110
G+IP A+ LF E + G +S AS +EI ++ V+DLL+T +
Sbjct: 144 EGLIPRALRHLFSVAQELSGQ-GWTYSFVASYVEI--YNETVRDLLATGTR 191
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 68.5 bits (168), Expect = 1e-13
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 2 FAFDAIF-SDEP-------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS 53
F FD F S Q + S + + G C+F +G GKSYTM+G+
Sbjct: 98 FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157
Query: 54 PQSSATLGVIPSAISWLFRCISEQKHKT-GARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
P G+IP LF+ I+ + +T ++V+ S E+ ++HV+DLL+ K
Sbjct: 158 PDQP---GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEV--YNEHVRDLLAPVVPNK 212
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 66.4 bits (163), Expect = 5e-13
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 2 FAFDAIF--SDEP-------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
F+FD + P Q ++ +++Q G + C+F +G GKSYTM+G
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 53 SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+ G+IP LF I++ + +SV S +EI + V+DLL+ + G
Sbjct: 110 KQEKD-QQGIIPQLCEDLFSRINDTTND-NMSYSVEVSYMEI--YCERVRDLLNPKNKGN 165
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 66.5 bits (163), Expect = 6e-13
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS---PQSS 57
F FD F + + ++Q + G F +G GK++TM G +
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162
Query: 58 ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
A+ G+ A +F ++ ++ V + EI + + DLL+
Sbjct: 163 ASKGIYAMASRDVFLLKNQPCYR-KLGLEVYVTFFEIYNG--KLFDLLN 208
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 66.1 bits (162), Expect = 7e-13
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 2 FAFDAIFSDEP---------QSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVG 52
FA+D F Q + +++Q G + C+F +G GKSYTM+G
Sbjct: 53 FAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG 112
Query: 53 SPQSSATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGK 112
+ G+IP S LF +++++ F V S +EI ++ V+DLL + +
Sbjct: 113 TADQP---GLIPRLCSGLFERTQKEENE-EQSFKVEVSYMEI--YNEKVRDLLDPKGSRQ 166
Query: 113 FFRL 116
++
Sbjct: 167 TLKV 170
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 65.0 bits (159), Expect = 2e-12
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGS---PQSS 57
F FD F + + ++Q + G F +G GK++TM G +
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182
Query: 58 ATLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
A+ G+ A +F ++ +++ V + EI + V DLL+
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYR-NLNLEVYVTFFEIYNGK--VFDLLN 228
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 60.7 bits (148), Expect = 5e-11
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 2 FAFDAIFSDE-PQSEICTSALSDVIQAVI-SGSDGCLFCFGHARLGKSYTMVGSPQSSA- 58
F D +F D + + + +I + +G F +G GK+YTM+GS
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111
Query: 59 -TLGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLS 106
T G+ A +F ++ + S EI + DLL
Sbjct: 112 DTPGIFQYAAGDIFTFLNIYDKDN--TKGIFISFYEIYCGK--LYDLLQ 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 5e-05
Identities = 35/262 (13%), Positives = 68/262 (25%), Gaps = 102/262 (38%)
Query: 21 LSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISEQKHK 80
+ D+ ++++S + H ++ S + S LF + ++ +
Sbjct: 38 VQDMPKSILSKEE-----IDH--------IIMSKDAV-------SGTLRLFWTLLSKQEE 77
Query: 81 TGARFSVRASAIEISSSSQHVKDLLST-YSNGKFFRLCFLK-RFHAE-EDEEMPC----- 132
+F V+++L Y FL E M
Sbjct: 78 MVQKF---------------VEEVLRINYK--------FLMSPIKTEQRQPSMMTRMYIE 114
Query: 133 ---------PVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKS--- 180
V + +SR R L N + G+G K+
Sbjct: 115 QRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVA 167
Query: 181 ---FRNFG----FGSGIQY-----CKND---LETLEQYC-----------------KNDF 208
++ I + C + LE L++ K
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 209 NQSTWRNDRLEQLKREKRALLI 230
+ RL + K + LL+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLV 249
Score = 36.8 bits (84), Expect = 0.006
Identities = 39/263 (14%), Positives = 78/263 (29%), Gaps = 77/263 (29%)
Query: 11 EPQSEICTSALSDVIQA---VISGSDGCLFCFGHARLGKSYTMVGSP-QSSATLGVIPSA 66
+P ++ AL ++ A +I G G GK+ + S +
Sbjct: 135 QPYLKL-RQALLELRPAKNVLIDGVLGS---------GKT-WVALDVCLSYKVQCKMDFK 183
Query: 67 ISWLF--RCISE-------QK--HKTGARFSVRASAIE-ISSSSQHVKDLLSTYSNGKFF 114
I WL C S QK ++ ++ R+ I ++ L K +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 115 RLCFL-----------KRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYS 163
C L F + C + LLT +R +++ + ++ +
Sbjct: 244 ENCLLVLLNVQNAKAWNAF------NLSCKI-------LLT-TRFKQVTDFLSAATTTHI 289
Query: 164 NSNERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETL-EQYCKN-------------DFN 209
+ + H + ++Y + L + D
Sbjct: 290 SLD---HHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 210 QSTWRNDRLEQLKREKRALLIEL 232
+TW D + + +K +IE
Sbjct: 342 -ATW--DNWKHVNCDKLTTIIES 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 48/277 (17%), Positives = 79/277 (28%), Gaps = 124/277 (44%)
Query: 18 TSALSDVIQAV-ISGSD-------------GCLF--------CFGHARLGKSYTMVGSPQ 55
T ++ AV I+ +D LF + + L +++ +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL--PPSIL---E 325
Query: 56 SSATLGV-IPS---AISWLFRCISEQKH--KTGARFSVRASAIEIS---SSSQHV----- 101
S +PS +IS L + Q + KT + +EIS + V
Sbjct: 326 DSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLP-AGKQVEISLVNGAKNLVVSGPP 383
Query: 102 KDL--LSTY------------SNGKF------FRLCFLKRFHAEEDEEMPCPVPPPLHSN 141
+ L L+ S F F FL PV P HS+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-------------PVASPFHSH 430
Query: 142 LLTLSRDSLISNKRNDN-----SSL----YSNSN------------ERL----------- 169
LL + D + + +N + Y + ER+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 170 ---------H----DPGGTGSIKSF--RNFGFGSGIQ 191
H PGG + RN G+G++
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKD-GTGVR 526
Score = 32.3 bits (73), Expect = 0.17
Identities = 61/342 (17%), Positives = 94/342 (27%), Gaps = 129/342 (37%)
Query: 2 FAFDAIFSDEPQS--EICTSALSDVIQAVISGSDG--------CLFCF------G---HA 42
FA D DEP + E+ L V V G CL F G HA
Sbjct: 48 FAAD----DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 43 -----------------RLGKSY----TMVGSPQSSATLGVIPSAISWLFRCISEQKHKT 81
L K+Y M P + SA LFR + E +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS----NSA---LFRAVGEGNAQL 156
Query: 82 GARF-----------------SVRASAIE--ISSSSQHVKDLLSTYSNGKFFRLCFLKRF 122
A F + I S++ + +L+ T + + F +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV---FTQGL 213
Query: 123 HA----EEDEEMP-------CPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHD 171
+ E P P+ PL ++ L+ + + ++ R +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAHYVVTAKLLG-----FTPGELRSYL 267
Query: 172 PGGTG---------------SIKSFRN---------FGFGSGIQ--YCKNDLE--TLEQY 203
G TG S +SF F G Y L LE
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 204 CKNDFNQSTW----RNDRLEQLKREKRALLIELAATKTHLSQ 241
+N+ + N EQ+ + + T +HL
Sbjct: 328 LENNEGVPSPMLSISNLTQEQV--QDY-----VNKTNSHLPA 362
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 33.4 bits (77), Expect = 0.051
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
KTG S+ +K L TY
Sbjct: 185 HLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYG 219
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 32.2 bits (74), Expect = 0.12
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
+HKTGA R +VR A+ + +L Y+
Sbjct: 178 HRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYA 212
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 32.2 bits (74), Expect = 0.12
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
++KTGA R ++R A+ + + L Y+
Sbjct: 184 HRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYA 218
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 32.2 bits (74), Expect = 0.13
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
HKTGA + SVR A+ L Y+
Sbjct: 177 HVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYA 211
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 31.8 bits (73), Expect = 0.18
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
K KTGA ++V+A I + + + ++
Sbjct: 181 HKEKTGALLHYAVQAGLI-LGQAPEAQWPAYLQFA 214
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 31.5 bits (72), Expect = 0.20
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
+HKT S+ + + + L +
Sbjct: 185 HEHKTAKLISASLIMGLVASGIKDEELFKWLQAFG 219
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 31.4 bits (72), Expect = 0.23
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
+HKTGA SV A+ + + L TY+
Sbjct: 178 HRHKTGALIEASVILGALASGRAEKGELKALQTYA 212
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 31.1 bits (71), Expect = 0.25
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
KTGA R SVR + + D L Y+
Sbjct: 184 HIRKTGALIRASVRLACLARPGLPAEQFDRLDHYA 218
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 31.0 bits (71), Expect = 0.31
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
K KTGA F+V ++A I++ K+ L +YS
Sbjct: 174 HKTKTGALLTFAVMSAAD-IANVDDTTKEHLESYS 207
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 30.7 bits (70), Expect = 0.32
Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
+ KTGA F++ A + +++ ++ V LL+ ++
Sbjct: 182 HEKKTGALIEFALIAGGV-LANQTEEVIGLLTQFA 215
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 30.3 bits (69), Expect = 0.55
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
Q KTGA RF+ A AI I+ S+Q + L +
Sbjct: 218 QAMKTGALLRFACEAGAI-IAGSNQAERQRLRLFG 251
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 29.5 bits (67), Expect = 0.82
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
KTG + S+ + A+ ++ +S+ L +
Sbjct: 207 HLKKTGELIKASIMSGAV-LAEASEGDIKKLEGFG 240
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.4
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 6/28 (21%)
Query: 213 WR---NDRLEQL---KREKRALLIELAA 234
WR RL++L + E A
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAK 117
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 28.3 bits (64), Expect = 2.0
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 77 QKHKTGA--RFSVRASAIEISSSSQHVKDLLSTYS 109
HKT A S I I S + L ++
Sbjct: 189 HLHKTAALLEASAVLGGI-IGGGSDEEIERLRKFA 222
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 77 QKHKTGA--RFSVRASAI 92
Q KTGA F+ +A AI
Sbjct: 175 QAGKTGALISFAAQAGAI 192
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 27.4 bits (60), Expect = 5.5
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 166 NERLHDPGGTGSIKSFRNFGFGSGIQYCKNDLETLEQYCKNDFNQSTWRNDRLEQLKREK 225
N ++ G I+SF++ SG+ + +L L N + + KR
Sbjct: 407 NRKVRTMGRKLQIESFKDKSLSSGLFFL--NL--LWAVEPRVVNWNLVTKGETDDEKRLN 462
Query: 226 RALLIELA 233
++ +A
Sbjct: 463 ATYIVSVA 470
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein;
YP_296737.1, carboxymuconolactone decarboxylase family;
HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Length = 197
Score = 26.4 bits (58), Expect = 6.6
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 18 TSALSDVIQAVISGSDGCLFCFG-HARLGKSYTMVGSPQSSATLGVIPSAISWLFRCISE 76
T ++I S ++ CL+C H + + Y P + + A+++L I
Sbjct: 70 TKGEREMIVVATSAANQCLYCVVAHGAILRIYE--KKPLVADQV-----AVNYLKADIPP 122
Query: 77 QKHKTGARFSVRASAIEISSSSQHVKDLL 105
+ + F+++ + + L
Sbjct: 123 -RQRAMLDFALKVCKASHEVNEADFEALR 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,495,185
Number of extensions: 190699
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 47
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)