RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9852
(241 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 59.1 bits (142), Expect = 6e-11
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+AFD +F S Q ++ +++ V+ G +G +F +G GK++TM G +
Sbjct: 44 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 103
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
G+IP + +F I F ++ S EI ++DLL +
Sbjct: 104 GIIPRIVQDIFNYIYSMDENL--EFHIKVSYFEI--YLDKIRDLLDVSKTNLSVHEDKNR 159
Query: 121 RFHAEEDEEMPCP 133
+ + E
Sbjct: 160 VPYVKGCTERFVC 172
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 52.7 bits (125), Expect = 1e-08
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 1 MFAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSAT 59
+ FD +F + Q ++ S + ++ VI G + +F +G GK++TM G +
Sbjct: 48 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE 107
Query: 60 L--------GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNG 111
G+IP + +F E+ G FSV+ S +EI ++ + DLL+ S+
Sbjct: 108 YTWEEDPLAGIIPRTLHQIF----EKLTDNGTEFSVKVSLLEI--YNEELFDLLNPSSDV 161
Query: 112 K 112
Sbjct: 162 S 162
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 43.8 bits (102), Expect = 7e-06
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSP-QSSAT 59
F FD +F QS+I ++ + +++G +G +F +G GKSYTM+G+
Sbjct: 48 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 107
Query: 60 LGVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFL 119
GVIP + +F I ++VR S +EI ++DLL+ ++
Sbjct: 108 RGVIPRIVEQIFTSI--LSSAANIEYTVRVSYMEIYME--RIRDLLAPQNDNLPVHEEKN 163
Query: 120 KRFHAEEDEEMPCP 133
+ + + E+
Sbjct: 164 RGVYVKGLLEIYVS 177
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 42.3 bits (98), Expect = 3e-05
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 2 FAFDAIFSDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATLG 61
F FD IF + + + ++Q+ + G + C+F +G GK++TM+ G
Sbjct: 52 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD-----G 106
Query: 62 VIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLKR 121
+IPS IS +F I++ K K G + V IEI ++++ DLL + +N K LK
Sbjct: 107 IIPSTISHIFNWINKLKTK-GWDYKVNCEFIEI--YNENIVDLLRSDNNNKEDTSIGLKH 163
Query: 122 FHAEEDEEMPCPVPP 136
+ E +
Sbjct: 164 EIRHDQETKTTTITN 178
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 38.8 bits (89), Expect = 3e-04
Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 2 FAFDAIF-SDEPQSEICTSALSDVIQAVISGSDGCLFCFGHARLGKSYTMVGSPQSSATL 60
+D +F + Q ++ ++Q+ + G + C+F +G GK++T+ G+ +
Sbjct: 44 HMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL- 101
Query: 61 GVIPSAISWLFRCISEQKHKTGARFSVRASAIEISSSSQHVKDLLSTYSNGKFFRLCFLK 120
P A+S LFR + + +K FS++A +E+ + DLL K +L
Sbjct: 102 --TPRAMSELFRIMKKDSNKF--SFSLKAYMVELYQDTLV--DLL-LPKQAKRLKLDI-- 152
Query: 121 RFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHD 171
+ ++ + + + + S +R+ +L + + R H
Sbjct: 153 KKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHL 203
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium
graveolens) [TaxId: 4045]}
Length = 153
Score = 32.1 bits (73), Expect = 0.026
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 129 EMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLHDPGGTGSIKSFRNFGFGS 188
E+ V + D+++ + + GG G++K G
Sbjct: 8 ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYK-----SVEIKGDGGPGTLKII-TLPDGG 61
Query: 189 GIQYCKNDLETL 200
I ++ +
Sbjct: 62 PITTMTLRIDGV 73
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
2287]}
Length = 91
Score = 28.1 bits (63), Expect = 0.32
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 214 RNDRLEQLKREKRAL-LIELAATKTHLS 240
R + Q K+ +R ++EL + K LS
Sbjct: 6 RRKKNLQWKKIQRLDKILELVSQKLKLS 33
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.7 bits (54), Expect = 4.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 122 FHAEEDEEMPCPVPPPLHSNLL 143
F +EE + P +PP L +L
Sbjct: 7 FRSEERFKSPPILPPHLLQVIL 28
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Human (Homo sapiens) [TaxId: 9606]}
Length = 210
Score = 25.3 bits (55), Expect = 6.7
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 18/106 (16%)
Query: 112 KFFRLCF-LKRFHAEEDEEMPCPVPPPLHSNLLTLSRDSLISNKRNDNSSLYSNSNERLH 170
+++ RF + +D ++ SL S +
Sbjct: 42 EWYLKNLQFHRFWSVDDTQVHTE-------------YSSLRSIVVANYEESIKMPINEPA 88
Query: 171 DPGGTGSIKSFRNFGFGSGIQY----CKNDLETLEQYCKNDFNQST 212
I+ + ++ G+G+Q+ ++ + T+ +
Sbjct: 89 PGRKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHLRERGMEFLA 134
>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 24.5 bits (53), Expect = 9.3
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 191 QYCKNDLETLEQYCKNDF 208
+ C+ +C +
Sbjct: 9 KQCRRTGTLQSNFCASSL 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 854,547
Number of extensions: 36870
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)