BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy986
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51114|FXR1_HUMAN Fragile X mental retardation syndrome-related protein 1 OS=Homo
sapiens GN=FXR1 PE=1 SV=3
Length = 621
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%), Gaps = 2/63 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPF 60
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF
Sbjct: 278 FLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENK--LPREDGMVPF 335
Query: 61 MVL 63
+ +
Sbjct: 336 VFV 338
>sp|Q5XI81|FXR1_RAT Fragile X mental retardation syndrome-related protein 1 OS=Rattus
norvegicus GN=Fxr1 PE=2 SV=1
Length = 568
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%), Gaps = 2/63 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPF 60
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF
Sbjct: 278 FLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENK--LPREDGMVPF 335
Query: 61 MVL 63
+ +
Sbjct: 336 VFV 338
>sp|Q2TBT7|FXR1_BOVIN Fragile X mental retardation syndrome-related protein 1 OS=Bos
taurus GN=FXR1 PE=2 SV=1
Length = 621
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%), Gaps = 2/63 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPF 60
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF
Sbjct: 278 FLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENK--LPREDGMVPF 335
Query: 61 MVL 63
+ +
Sbjct: 336 VFV 338
>sp|P51116|FXR2_HUMAN Fragile X mental retardation syndrome-related protein 2 OS=Homo
sapiens GN=FXR2 PE=1 SV=2
Length = 673
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 56/62 (90%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE+SE+S+QVPRNLVGKVIGKNG++IQEIVDKSGVVRV++EGDN+ + PREEG VPF+
Sbjct: 289 LEFSEDSVQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKN--PREEGMVPFI 346
Query: 62 VL 63
+
Sbjct: 347 FV 348
>sp|P51115|FXR1A_XENLA Fragile X mental retardation syndrome-related protein 1 homolog A
OS=Xenopus laevis GN=fxr1-a PE=1 SV=2
Length = 676
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF+
Sbjct: 279 LEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNETK--LPREDGMVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|Q61584|FXR1_MOUSE Fragile X mental retardation syndrome-related protein 1 OS=Mus
musculus GN=Fxr1 PE=1 SV=2
Length = 677
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%), Gaps = 2/63 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPF 60
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF
Sbjct: 278 FLEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENK--LPREDGMVPF 335
Query: 61 MVL 63
+ +
Sbjct: 336 VFV 338
>sp|Q5BJ56|FXR1_XENTR Fragile X mental retardation syndrome-related protein 1 homolog
OS=Xenopus tropicalis GN=fxr1 PE=2 SV=2
Length = 674
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF+
Sbjct: 279 LEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNETK--LPREDGMVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|Q7ZTQ5|FXR1B_XENLA Fragile X mental retardation syndrome-related protein 1 homolog B
OS=Xenopus laevis GN=fxr1-b PE=2 SV=1
Length = 675
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF+
Sbjct: 279 LEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNETK--LPREDGMVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|O70523|FXR1_CRIGR Fragile X mental retardation syndrome-related protein 1
OS=Cricetulus griseus GN=FXR1 PE=2 SV=1
Length = 621
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 2/63 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPF 60
+E+ E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IEGDNE + LPRE+G VPF
Sbjct: 278 FMEFVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENK--LPREDGMVPF 335
Query: 61 MVL 63
+ +
Sbjct: 336 VFV 338
>sp|Q9NFU0|FMR1_DROME Fragile X mental retardation syndrome-related protein 1
OS=Drosophila melanogaster GN=Fmr1 PE=1 SV=1
Length = 684
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVK---IEGDNEPQPTLPREEGQ 57
MLEY+EE QVPR LVGKVIGKNGRIIQEIVDKSGV R+K I GD+E +PRE
Sbjct: 281 MLEYAEEFFQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKVSAIAGDDEQDQNIPRELAH 340
Query: 58 VPFMVL 63
VPF+ +
Sbjct: 341 VPFVFI 346
>sp|Q2KHP9|FMR1B_XENLA Fragile X mental retardation protein 1 homolog B OS=Xenopus laevis
GN=fmr1-b PE=2 SV=1
Length = 564
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 53/62 (85%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +N+ + +EEG VPF+
Sbjct: 279 LEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAEND--KNISQEEGNVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|P51113|FMR1A_XENLA Fragile X mental retardation protein 1 homolog A OS=Xenopus laevis
GN=fmr1-a PE=1 SV=1
Length = 564
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE++E +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +N+ + +EEG VPF+
Sbjct: 279 LEFAENVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAEND--KNISQEEGIVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|Q6GLC9|FMR1_XENTR Fragile X mental retardation protein 1 homolog OS=Xenopus
tropicalis GN=fmr1 PE=2 SV=1
Length = 590
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +N+ + EEG VPF+
Sbjct: 279 LEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAEND--KNISPEEGMVPFV 336
Query: 62 VL 63
+
Sbjct: 337 FV 338
>sp|Q9WVR4|FXR2_MOUSE Fragile X mental retardation syndrome-related protein 2 OS=Mus
musculus GN=Fxr2 PE=1 SV=1
Length = 673
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 52/62 (83%), Gaps = 2/62 (3%)
Query: 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFM 61
LE+SE+S+QVPR+LVGKV GK G++IQ IVDKSGVVRV++EGDN+ + P+E G VPF+
Sbjct: 289 LEFSEDSVQVPRDLVGKVTGKTGKVIQGIVDKSGVVRVRVEGDNDKKN--PKEGGMVPFI 346
Query: 62 VL 63
+
Sbjct: 347 FV 348
>sp|Q80WE1|FMR1_RAT Fragile X mental retardation protein 1 homolog OS=Rattus norvegicus
GN=Fmr1 PE=2 SV=2
Length = 593
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 51/59 (86%), Gaps = 2/59 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVP 59
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +NE ++P+EE +P
Sbjct: 278 FLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENE--KSVPQEEENLP 334
>sp|P35922|FMR1_MOUSE Fragile X mental retardation protein 1 homolog OS=Mus musculus
GN=Fmr1 PE=1 SV=1
Length = 614
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 51/59 (86%), Gaps = 2/59 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVP 59
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +NE ++P+EE +P
Sbjct: 278 FLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENE--KSVPQEEEIMP 334
>sp|Q06787|FMR1_HUMAN Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=1
SV=1
Length = 632
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 50/59 (84%), Gaps = 2/59 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVP 59
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +NE +P+EE +P
Sbjct: 278 FLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENE--KNVPQEEEIMP 334
>sp|Q5R9B4|FMR1_PONAB Fragile X mental retardation protein 1 homolog OS=Pongo abelii
GN=FMR1 PE=2 SV=1
Length = 594
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 50/59 (84%), Gaps = 2/59 (3%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVP 59
LE++E+ +QVPRNLVGKVIGKNG++IQEIVDKSGVVRV+IE +NE +P+EE +P
Sbjct: 278 FLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENE--KNVPQEEEIMP 334
>sp|Q11U61|PNP_CYTH3 Polyribonucleotide nucleotidyltransferase OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=pnp PE=3 SV=1
Length = 717
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
+Q+P+ L+G VIG G+IIQEI SG E DN
Sbjct: 567 IQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEEKDN 603
>sp|B8EP09|PNP_METSB Polyribonucleotide nucleotidyltransferase OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=pnp
PE=3 SV=1
Length = 714
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+L++P + + +VIG G++I+EIV+K+G ++ IE D
Sbjct: 557 ETLKIPTDKIREVIGTGGKVIREIVEKTG-AKINIEDDG 594
>sp|B6JCR8|PNP_OLICO Polyribonucleotide nucleotidyltransferase OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=pnp PE=3 SV=1
Length = 714
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E LQ+P + + VIG G++I+EIV+K+G ++ IE D
Sbjct: 557 EVLQIPTDKIRDVIGTGGKVIREIVEKTG-AKINIEDDG 594
>sp|A5E870|PNP_BRASB Polyribonucleotide nucleotidyltransferase OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=pnp PE=3 SV=1
Length = 720
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|Q1QS60|PNP_NITHX Polyribonucleotide nucleotidyltransferase OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=pnp PE=3 SV=2
Length = 720
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E+ ++P + + +VIG G++I+EIV+K+G ++ IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKINIEDD 593
>sp|Q13EM2|PNP_RHOPS Polyribonucleotide nucleotidyltransferase OS=Rhodopseudomonas
palustris (strain BisB5) GN=pnp PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|Q2J2J4|PNP_RHOP2 Polyribonucleotide nucleotidyltransferase OS=Rhodopseudomonas
palustris (strain HaA2) GN=pnp PE=3 SV=1
Length = 718
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|A9W8P8|PNP_METEP Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
extorquens (strain PA1) GN=pnp PE=3 SV=2
Length = 745
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42
E++Q+P + + VIG G+II+EIV+K+G ++ IE
Sbjct: 557 ETMQIPTDKIRDVIGTGGKIIREIVEKTG-AKINIE 591
>sp|B7KN55|PNP_METC4 Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=pnp PE=3
SV=1
Length = 745
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42
E++Q+P + + VIG G+II+EIV+K+G ++ IE
Sbjct: 557 ETMQIPTDKIRDVIGTGGKIIREIVEKTG-AKINIE 591
>sp|B3QAB0|PNP_RHOPT Polyribonucleotide nucleotidyltransferase OS=Rhodopseudomonas
palustris (strain TIE-1) GN=pnp PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|Q6NCN8|PNP_RHOPA Polyribonucleotide nucleotidyltransferase OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=pnp PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|B1ZGS7|PNP_METPB Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=pnp PE=3 SV=1
Length = 745
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42
E++Q+P + + VIG G+II+EIV+K+G ++ IE
Sbjct: 557 ETMQIPTDKIRDVIGTGGKIIREIVEKTG-AKINIE 591
>sp|Q89WB3|PNP_BRAJA Polyribonucleotide nucleotidyltransferase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=pnp PE=3 SV=1
Length = 720
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|Q3SWP5|PNP_NITWN Polyribonucleotide nucleotidyltransferase OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=pnp PE=3
SV=1
Length = 718
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V IE D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIEDDG 594
>sp|B0UEX5|PNP_METS4 Polyribonucleotide nucleotidyltransferase OS=Methylobacterium sp.
(strain 4-46) GN=pnp PE=3 SV=1
Length = 725
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGV 36
E++Q+P + + +VIG G++I+EIV+K+G
Sbjct: 557 ETMQIPTDKIREVIGTGGKVIREIVEKTGA 586
>sp|A8LKE7|PNP_DINSH Polyribonucleotide nucleotidyltransferase OS=Dinoroseobacter shibae
(strain DFL 12) GN=pnp PE=3 SV=1
Length = 711
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E++Q+P + + +VIG G++I+EIV+ SG +V I D
Sbjct: 560 ETMQIPTDKIREVIGSGGKVIREIVETSG-AKVDINDD 596
>sp|B8IGX3|PNP_METNO Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=pnp PE=3 SV=1
Length = 725
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGV 36
E++Q+P + + +VIG G++I+EIV+K+G
Sbjct: 557 ETMQIPTDKIREVIGTGGKVIREIVEKTGA 586
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh
PE=1 SV=1
Length = 560
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTL 51
E L VP+ VG++IG+ G I+ I SG KI D E + TL
Sbjct: 127 EQLSVPQRSVGRIIGRGGETIRSICKASG---AKITCDKESEGTL 168
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTL 51
E L VP+ VG++IG+ G I+ I SG KI D E + TL
Sbjct: 127 EQLSVPQRSVGRIIGRGGETIRSICKASG---AKITCDKESEGTL 168
>sp|B1LZQ1|PNP_METRJ Polyribonucleotide nucleotidyltransferase OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=pnp PE=3 SV=1
Length = 739
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42
E++Q+P + + VIG G++I+EIV+K+G ++ IE
Sbjct: 557 ETMQIPTDKIRDVIGTGGKVIREIVEKTG-AKINIE 591
>sp|Q1GKK5|PNP_RUEST Polyribonucleotide nucleotidyltransferase OS=Ruegeria sp. (strain
TM1040) GN=pnp PE=3 SV=1
Length = 711
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E++QVP + + +VIG G++I+EIV+ SG +V I D
Sbjct: 559 ETMQVPTDKIREVIGSGGKVIREIVEVSG-AKVDINDDG 596
>sp|B3EU51|PNP_AMOA5 Polyribonucleotide nucleotidyltransferase OS=Amoebophilus asiaticus
(strain 5a2) GN=pnp PE=3 SV=1
Length = 713
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVV 37
S ++ +P+N++G VIG +G+I+QE+ ++G
Sbjct: 562 SFSTMTIPKNMIGAVIGPSGKIVQEMQRETGTT 594
>sp|Q07V82|PNP_RHOP5 Polyribonucleotide nucleotidyltransferase OS=Rhodopseudomonas
palustris (strain BisA53) GN=pnp PE=3 SV=1
Length = 721
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E+ ++P + + +VIG G++I+EIV+K+G +V I+ D
Sbjct: 557 ETFKIPTDKIREVIGTGGKVIREIVEKTG-AKVNIDDDG 594
>sp|Q28K17|PNP_JANSC Polyribonucleotide nucleotidyltransferase OS=Jannaschia sp. (strain
CCS1) GN=pnp PE=3 SV=1
Length = 706
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 3 EYSE-----ESLQVPRNLVGKVIGKNGRIIQEIVDKSGV-VRVKIEG 43
E+SE E++Q+P + + +VIG G++I+EIV+ SG V + EG
Sbjct: 550 EFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEG 596
>sp|Q5LN23|PNP_RUEPO Polyribonucleotide nucleotidyltransferase OS=Ruegeria pomeroyi
(strain ATCC 700808 / DSM 15171 / DSS-3) GN=pnp PE=3
SV=1
Length = 714
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E++Q+P + + +VIG G++I+EIV+ SG +V I D
Sbjct: 559 ETMQIPTDKIREVIGSGGKVIREIVEVSG-AKVDINDDG 596
>sp|Q98BI3|PNP_RHILO Polyribonucleotide nucleotidyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=pnp PE=3 SV=1
Length = 715
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E + +P + + VIG G++I+EIV+K+G ++ IE D
Sbjct: 558 EVMHIPTDKIRDVIGSGGKVIREIVEKTG-AKINIEDDG 595
>sp|Q16CF6|PNP_ROSDO Polyribonucleotide nucleotidyltransferase OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=pnp PE=3
SV=1
Length = 711
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSG 35
E++Q+P + + +VIG G++I+EIV+ SG
Sbjct: 559 ETMQIPTDKIREVIGSGGKVIREIVEVSG 587
>sp|Q11BC3|PNP_MESSB Polyribonucleotide nucleotidyltransferase OS=Mesorhizobium sp.
(strain BNC1) GN=pnp PE=3 SV=1
Length = 715
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
E + +P + + VIG G++I+EIV+K+G ++ IE D
Sbjct: 558 EVMHIPTDKIRDVIGTGGKVIREIVEKTG-AKINIEDDG 595
>sp|Q3IYT7|PNP_RHOS4 Polyribonucleotide nucleotidyltransferase OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=pnp PE=3 SV=1
Length = 716
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E+L +P + + +VIG G++I+EIV+ SG +V I D
Sbjct: 559 ETLTIPTDKIREVIGSGGKVIREIVETSG-AKVDINDD 595
>sp|A3PNG0|PNP_RHOS1 Polyribonucleotide nucleotidyltransferase OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=pnp PE=3
SV=1
Length = 716
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E+L +P + + +VIG G++I+EIV+ SG +V I D
Sbjct: 559 ETLTIPTDKIREVIGSGGKVIREIVETSG-AKVDINDD 595
>sp|Q5NQ32|PNP_ZYMMO Polyribonucleotide nucleotidyltransferase OS=Zymomonas mobilis
subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pnp
PE=3 SV=1
Length = 748
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E++ VP++ + VIG G++I+EIV +G +V IE D
Sbjct: 554 ETMSVPKDKIRDVIGTGGKVIREIVATTG-AKVDIEDD 590
>sp|A4WWP0|PNP_RHOS5 Polyribonucleotide nucleotidyltransferase OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=pnp PE=3
SV=2
Length = 714
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
E+L +P + + +VIG G++I+EIV+ SG +V I D
Sbjct: 559 ETLTIPTDKIREVIGSGGKVIREIVETSG-AKVDINDD 595
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.137 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,867,734
Number of Sequences: 539616
Number of extensions: 1048733
Number of successful extensions: 3632
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3384
Number of HSP's gapped (non-prelim): 288
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)