Query psy986
Match_columns 71
No_of_seqs 115 out of 400
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qnd_A FMR1 protein; KH domain 99.1 2.8E-11 9.7E-16 80.2 3.3 63 2-66 64-126 (144)
2 1dtj_A RNA-binding neurooncolo 98.6 5.5E-08 1.9E-12 57.3 4.8 41 5-46 3-43 (76)
3 1zzk_A Heterogeneous nuclear r 98.4 4.3E-07 1.5E-11 54.7 4.9 38 5-43 7-44 (82)
4 2hh2_A KH-type splicing regula 98.4 4.6E-07 1.6E-11 57.4 4.8 40 6-46 8-47 (107)
5 1ec6_A RNA-binding protein NOV 98.4 1.4E-07 4.9E-12 57.2 2.3 40 6-46 4-43 (87)
6 1vig_A Vigilin; RNA-binding pr 98.3 5.3E-07 1.8E-11 53.3 3.5 41 3-44 3-43 (71)
7 2opv_A KHSRP protein; KH domai 98.3 7.3E-07 2.5E-11 54.0 3.8 37 6-43 15-51 (85)
8 2p2r_A Poly(RC)-binding protei 98.3 3.5E-07 1.2E-11 54.1 2.2 38 5-43 5-42 (76)
9 1x4n_A FAR upstream element bi 98.2 3.8E-07 1.3E-11 56.2 2.0 39 5-44 15-53 (92)
10 1we8_A Tudor and KH domain con 98.2 9.2E-07 3.2E-11 55.5 3.5 39 6-45 16-54 (104)
11 1wvn_A Poly(RC)-binding protei 98.2 9.1E-07 3.1E-11 53.1 3.3 39 4-43 5-43 (82)
12 3krm_A Insulin-like growth fac 98.2 1.2E-06 4E-11 57.1 3.9 53 7-65 87-139 (163)
13 1j5k_A Heterogeneous nuclear r 98.2 7.6E-07 2.6E-11 54.4 2.1 38 5-43 14-51 (89)
14 2axy_A Poly(RC)-binding protei 98.1 6.6E-07 2.2E-11 53.1 1.5 39 5-44 5-43 (73)
15 2cpq_A FragIle X mental retard 98.1 8.7E-07 3E-11 56.2 2.0 39 4-42 14-52 (91)
16 2hh3_A KH-type splicing regula 98.1 1.9E-06 6.4E-11 54.9 3.5 39 6-45 12-50 (106)
17 1j4w_A FUSE binding protein; s 98.1 3E-06 1E-10 55.9 4.3 39 5-44 104-142 (174)
18 1x4m_A FAR upstream element bi 98.1 1.5E-06 5.2E-11 53.6 2.2 39 5-44 15-53 (94)
19 2ctl_A Vigilin; K homology typ 98.0 3.4E-06 1.2E-10 52.7 3.3 38 5-43 17-54 (97)
20 2jvz_A KH type-splicing, FAR u 98.0 3.1E-06 1.1E-10 54.7 2.9 37 7-44 93-129 (164)
21 2jzx_A Poly(RC)-binding protei 98.0 2.5E-06 8.5E-11 55.4 1.7 38 5-43 89-126 (160)
22 1j4w_A FUSE binding protein; s 97.9 3.4E-06 1.2E-10 55.7 2.1 39 5-44 3-41 (174)
23 2jvz_A KH type-splicing, FAR u 97.9 7.7E-06 2.6E-10 52.9 3.6 38 6-44 3-40 (164)
24 2cte_A Vigilin; K homology typ 97.9 7.7E-06 2.6E-10 50.5 3.3 37 5-42 17-53 (94)
25 2anr_A Neuro-oncological ventr 97.9 3.3E-06 1.1E-10 55.8 1.4 39 5-44 104-142 (178)
26 2ctm_A Vigilin; K homology typ 97.9 9.2E-06 3.1E-10 50.6 3.4 39 4-43 16-54 (95)
27 3krm_A Insulin-like growth fac 97.9 9.7E-06 3.3E-10 52.7 3.4 39 5-44 3-41 (163)
28 2dgr_A Ring finger and KH doma 97.8 6.6E-06 2.3E-10 50.5 2.2 38 5-43 10-47 (83)
29 2ctj_A Vigilin; K homology typ 97.7 8.3E-06 2.8E-10 51.1 1.4 41 3-43 15-55 (95)
30 2ctk_A Vigilin; K homology typ 97.7 1E-05 3.6E-10 51.1 1.9 37 6-43 18-54 (104)
31 2anr_A Neuro-oncological ventr 97.7 1.6E-05 5.5E-10 52.5 2.3 40 4-44 5-44 (178)
32 2jzx_A Poly(RC)-binding protei 97.7 1.2E-05 4E-10 52.2 1.5 38 5-43 5-42 (160)
33 2ctf_A Vigilin; K homology typ 97.3 0.0002 6.9E-09 45.1 3.2 40 4-43 26-65 (102)
34 2qnd_A FMR1 protein; KH domain 97.1 0.00024 8.1E-09 46.7 2.7 30 6-35 5-34 (144)
35 2yqr_A KIAA0907 protein; struc 96.5 0.0026 8.9E-08 41.5 3.9 39 4-43 11-56 (119)
36 2e3u_A PH-DIM2P, hypothetical 96.4 0.001 3.4E-08 47.0 1.6 36 7-43 36-71 (219)
37 1k1g_A SF1-BO isoform; splicin 96.2 0.0018 6.3E-08 42.6 1.8 38 5-43 7-50 (131)
38 3u1k_A Polyribonucleotide nucl 96.0 0.002 6.8E-08 51.6 1.3 36 6-42 568-603 (630)
39 2e3u_A PH-DIM2P, hypothetical 95.5 0.0028 9.4E-08 44.8 0.5 27 15-42 139-165 (219)
40 2bl5_A MGC83862 protein, quaki 95.5 0.011 3.7E-07 39.7 3.4 37 6-43 3-45 (140)
41 1tua_A Hypothetical protein AP 95.0 0.0052 1.8E-07 42.8 0.5 27 15-42 108-134 (191)
42 4aid_A Polyribonucleotide nucl 94.6 0.006 2.1E-07 49.8 0.0 35 7-42 572-606 (726)
43 3cdi_A Polynucleotide phosphor 92.8 0.02 6.8E-07 46.5 0.0 35 7-42 562-596 (723)
44 1tua_A Hypothetical protein AP 91.2 0.13 4.4E-06 35.7 2.7 36 6-42 5-40 (191)
45 2cxc_A NUSA; transcription ter 90.9 0.11 3.9E-06 34.7 2.1 31 5-35 103-133 (144)
46 1e3p_A Guanosine pentaphosphat 90.5 0.022 7.5E-07 46.6 -2.0 35 7-42 600-634 (757)
47 2pt7_G HP1451, hypothetical pr 90.3 0.1 3.5E-06 35.2 1.5 28 7-34 35-62 (152)
48 2cxc_A NUSA; transcription ter 89.9 0.22 7.4E-06 33.3 2.8 39 7-46 38-76 (144)
49 3n89_A Defective in GERM LINE 88.5 0.13 4.3E-06 39.2 0.9 36 5-41 30-67 (376)
50 3gku_A Probable RNA-binding pr 88.5 0.07 2.4E-06 38.1 -0.5 31 7-37 94-124 (225)
51 1go3_E DNA-directed RNA polyme 88.4 0.91 3.1E-05 30.0 5.0 27 5-34 7-34 (187)
52 2asb_A Transcription elongatio 88.3 0.32 1.1E-05 35.4 2.9 40 7-47 186-225 (251)
53 3n89_A Defective in GERM LINE 85.6 0.37 1.3E-05 36.6 2.1 36 6-42 187-224 (376)
54 1k0r_A NUSA; two component arr 82.1 0.85 2.9E-05 34.7 2.8 40 6-46 308-347 (366)
55 1hh2_P NUSA, N utilization sub 81.1 0.65 2.2E-05 34.8 1.8 36 6-42 304-339 (344)
56 3iev_A GTP-binding protein ERA 71.8 0.9 3.1E-05 31.8 0.3 28 8-35 243-271 (308)
57 3v69_A Protein filia; RNA-bind 71.1 1.6 5.6E-05 29.5 1.4 35 7-42 58-92 (140)
58 1wh9_A 40S ribosomal protein S 56.3 4.1 0.00014 25.0 1.1 24 12-35 42-65 (92)
59 1k0r_A NUSA; two component arr 52.9 5.3 0.00018 30.3 1.5 33 14-46 249-281 (366)
60 1wf3_A GTP-binding protein; GT 45.3 7.3 0.00025 27.3 1.1 22 14-35 240-261 (301)
61 2asb_A Transcription elongatio 45.1 8.5 0.00029 27.8 1.5 33 14-46 126-158 (251)
62 3j20_C 30S ribosomal protein S 38.6 12 0.00041 26.3 1.4 22 14-35 49-70 (210)
63 2xzm_C KH domain containing pr 36.7 13 0.00045 26.7 1.4 25 11-35 53-77 (243)
64 3u5c_D RP13, YS3, 40S ribosoma 34.2 13 0.00045 26.8 1.0 25 11-35 50-74 (240)
65 1y14_B B16, RPB7, DNA-directed 33.3 2.5 8.6E-05 27.7 -2.7 17 11-27 30-46 (171)
66 3iz6_B 40S ribosomal protein S 32.8 14 0.00048 26.3 0.9 25 11-35 50-74 (227)
67 3r8n_C 30S ribosomal protein S 32.5 13 0.00046 25.9 0.8 22 14-35 70-91 (206)
68 3i1m_C 30S ribosomal protein S 29.7 16 0.00054 26.1 0.8 23 13-35 70-92 (233)
69 2zkq_c 40S ribosomal protein S 29.4 14 0.00049 26.6 0.5 23 13-35 52-74 (243)
70 2vqe_C 30S ribosomal protein S 28.5 26 0.00088 25.0 1.7 23 13-35 70-92 (239)
71 3bbn_C Ribosomal protein S3; s 28.0 23 0.00078 24.8 1.4 21 15-35 80-100 (218)
72 1dar_A EF-G, elongation factor 25.1 23 0.00079 27.8 1.0 21 1-21 601-622 (691)
73 2b8k_G B16, DNA-directed RNA p 25.0 7.3 0.00025 27.0 -1.6 18 10-27 29-46 (215)
74 3j25_A Tetracycline resistance 21.7 18 0.00062 28.1 -0.2 21 1-21 534-555 (638)
75 2ywe_A GTP-binding protein LEP 21.1 17 0.00058 28.6 -0.4 21 1-21 403-424 (600)
76 1j7m_A Matrix metalloproteinas 20.4 58 0.002 19.3 2.0 16 51-66 18-33 (72)
No 1
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.12 E-value=2.8e-11 Score=80.21 Aligned_cols=63 Identities=67% Similarity=1.105 Sum_probs=54.7
Q ss_pred cceeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCCCCCCCCCCCCccceEEeeeE
Q psy986 2 LEYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFMVLTKT 66 (71)
Q Consensus 2 LEf~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e~~~~~~~~~~~vpF~~vGt~ 66 (71)
|++.+..+.||++.+|.+|||+|++|+.|++.+|+..++|..+++.. .+.+++.+||.++||.
T Consensus 64 l~~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~--~~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 64 LEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN--VPQEEGMVPFVFVGTK 126 (144)
T ss_dssp HCEEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC--CCCCTTEEEEEEEEEH
T ss_pred hhcceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC--ccccCCeeEEEEEeCH
Confidence 56778899999999999999999999999999999999998765542 3567788999999984
No 2
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.61 E-value=5.5e-08 Score=57.28 Aligned_cols=41 Identities=34% Similarity=0.653 Sum_probs=35.6
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
....+.||++.+|.+|||+|++|+.|+..+|+ .++|+.+++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga-~I~i~~~~~ 43 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGA-RIQISKKGE 43 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCC-EEEECCTTC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCC-EEEECcCCC
Confidence 34678999999999999999999999999996 788886544
No 3
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.40 E-value=4.3e-07 Score=54.67 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=34.1
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|.+|||+|++|+.|++.+++ .|+|+.
T Consensus 7 ~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga-~I~i~~ 44 (82)
T 1zzk_A 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA-SIKIDE 44 (82)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCC-EEEECC
T ss_pred EEEEEEEChHhcCeeECCCchHHHHHHHHHCC-EEEEcC
Confidence 45689999999999999999999999999996 688863
No 4
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=4.6e-07 Score=57.35 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=35.2
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
...+.||.+.+|.||||+|++|+.|++.+++ .|+|+.+.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa-~I~I~~~~~ 47 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGA-FVEISRQLP 47 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSS-EEEECCCCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCC-EEEEcCccC
Confidence 5689999999999999999999999999986 688875443
No 5
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.37 E-value=1.4e-07 Score=57.22 Aligned_cols=40 Identities=35% Similarity=0.668 Sum_probs=35.1
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
...+.||++.+|.||||+|.+|+.|++.+|+ .|+|+.+++
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga-~I~I~~~~~ 43 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGA-RIQISKKGE 43 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC-EEEECCTTC
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCC-EEEEccCCC
Confidence 4678999999999999999999999999996 688885443
No 6
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.29 E-value=5.3e-07 Score=53.33 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=35.6
Q ss_pred ceeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 3 EYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 3 Ef~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
+++...+.||++.+|.+||++|++|+.|++..+ +.++|+.+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg-~~I~i~~~ 43 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYK-VSVRIPPD 43 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTC-CEEECCCC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHC-CEEEECCC
Confidence 567889999999999999999999999999987 45777643
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.27 E-value=7.3e-07 Score=53.96 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=33.5
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
...+.||++.+|+||||+|.+|+.|++.+++ .++|+.
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga-~I~i~~ 51 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERAGV-KMILIQ 51 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHHTC-EEEECS
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHHCC-EEEEcC
Confidence 5689999999999999999999999999996 678874
No 8
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=54.15 Aligned_cols=38 Identities=37% Similarity=0.722 Sum_probs=34.0
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|.+|||+|.+|+.|++.+| +.++|+.
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tg-a~I~i~~ 42 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSG-AQIKIAN 42 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHC-CEEEECC
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHC-CEEEEcC
Confidence 4568999999999999999999999999999 4688874
No 9
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.24 E-value=3.8e-07 Score=56.19 Aligned_cols=39 Identities=36% Similarity=0.673 Sum_probs=34.8
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.||||+|++|+.|++.+++ .|+|+.+
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga-~I~I~~~ 53 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGC-KIQIAPD 53 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCC-EEEECSC
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHHhCC-EEEEcCC
Confidence 45789999999999999999999999999996 6888754
No 10
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.22 E-value=9.2e-07 Score=55.48 Aligned_cols=39 Identities=33% Similarity=0.679 Sum_probs=34.2
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~ 45 (71)
...+.||++.+|.||||+|.+|+.|++.+++ .|+|+.++
T Consensus 16 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga-~I~I~~~~ 54 (104)
T 1we8_A 16 FEQLSVPQRSVGRIIGRGGETIRSICKASGA-KITCDKES 54 (104)
T ss_dssp EEEEEEETTTHHHHHTTTSHHHHHHHHHHCC-EEEECCSS
T ss_pred EEEEEEChhheeeeECCCCHHHHHHHHHHCC-EEEEecCC
Confidence 4678999999999999999999999999986 68887443
No 11
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.21 E-value=9.1e-07 Score=53.11 Aligned_cols=39 Identities=38% Similarity=0.694 Sum_probs=34.5
Q ss_pred eeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 4 YSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 4 f~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
.....+.||++.+|.||||+|.+|+.|++.+|+ .|+|+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga-~I~i~~ 43 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGA-QIKIAN 43 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCC-EEEECC
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCC-EEEEec
Confidence 356789999999999999999999999999995 588874
No 12
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.20 E-value=1.2e-06 Score=57.13 Aligned_cols=53 Identities=28% Similarity=0.562 Sum_probs=40.4
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCCCCCCCCCCCCccceEEeee
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPREEGQVPFMVLTK 65 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e~~~~~~~~~~~vpF~~vGt 65 (71)
..+.||++.+|.+|||+|.+|+.|++.+|+ .+++..+.. +......++.+.|+
T Consensus 87 ~~i~vp~~~~g~iIGkgG~~I~~i~~~tga-~I~i~~~~~-----~~~~~~~~v~I~G~ 139 (163)
T 3krm_A 87 THIRVPASAAGRVIGKGGKTVNELQNLTAA-EVVVPRDQT-----PDENDQVIVKIIGH 139 (163)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHHHCC-EEECCTTCC-----CCTTSEEEEEEEEC
T ss_pred EEEEcChhheeeEEcCCChHHHHHHHHhCC-eEEECCCCC-----CCCCCceEEEEEeC
Confidence 379999999999999999999999999985 778864332 22333445666665
No 13
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.15 E-value=7.6e-07 Score=54.39 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=33.9
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|.||||+|++|+.|++.+++ .|+|+.
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga-~I~I~~ 51 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA-SIKIDE 51 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCC-EEEECS
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCC-eEEecC
Confidence 45679999999999999999999999999986 688863
No 14
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.14 E-value=6.6e-07 Score=53.05 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=34.3
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.+|||+|.+|+.|++.+|+ .++|+.+
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga-~I~i~~~ 43 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGA-RINISEG 43 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC-EEEECSS
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCC-EEEEecC
Confidence 45678999999999999999999999999985 6888743
No 15
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=8.7e-07 Score=56.24 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=35.2
Q ss_pred eeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 4 YSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 4 f~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
.....++||++.+|.+||++|++|++|++..|+-+|+|+
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ 52 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD 52 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE
Confidence 345789999999999999999999999999998678887
No 16
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.12 E-value=1.9e-06 Score=54.92 Aligned_cols=39 Identities=38% Similarity=0.762 Sum_probs=34.3
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~ 45 (71)
...+.||++.+|.||||+|.+|+.|++.+++ .|+|+.++
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGa-kI~I~~~~ 50 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGV-RIQFKQDD 50 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHHTC-EEEECSSC
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHHCc-EEEEecCC
Confidence 4689999999999999999999999999985 78887443
No 17
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.10 E-value=3e-06 Score=55.93 Aligned_cols=39 Identities=33% Similarity=0.624 Sum_probs=34.8
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.+|||+|++|+.|++.+++ .|+|..+
T Consensus 104 ~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga-~I~i~~~ 142 (174)
T 1j4w_A 104 QEFNFIVPTGKTGLIIGKGGETIKSISQQSGA-RIELQRN 142 (174)
T ss_dssp CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCC-EEEEECC
T ss_pred EEEEEEEChHHcCeeECCCchHHHHHHHHHCC-EEEECCC
Confidence 36689999999999999999999999999996 6888754
No 18
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.07 E-value=1.5e-06 Score=53.62 Aligned_cols=39 Identities=28% Similarity=0.612 Sum_probs=34.2
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.||||+|.+|+.|++.+++ .|+|+.+
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga-~I~I~~~ 53 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGV-KMVMIQD 53 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTS-EEEECCS
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCC-eEEecCC
Confidence 45689999999999999999999999999995 6888743
No 19
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.02 E-value=3.4e-06 Score=52.67 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=33.2
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|+|||++|.+|+.|++..+ +.|+|..
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg-~~I~i~~ 54 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHD-VNIQFPD 54 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHT-CEEECCC
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHC-CEEEecC
Confidence 3568999999999999999999999999988 4577763
No 20
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.01 E-value=3.1e-06 Score=54.74 Aligned_cols=37 Identities=41% Similarity=0.791 Sum_probs=33.4
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
..+.||++.+|++|||+|++|+.|++.+++ .++|..+
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~-~I~i~~~ 129 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGV-RIQFKQD 129 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHHTCC-EEEECCC
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHHHCC-eEEEeCC
Confidence 678999999999999999999999999986 7888744
No 21
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=2.5e-06 Score=55.43 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=34.1
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|.+|||+|++|+.|++.+|+ .+++..
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga-~I~i~~ 126 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGA-QVQVAG 126 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSS-EECCCC
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCC-eEEECC
Confidence 35688999999999999999999999999996 788874
No 22
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.93 E-value=3.4e-06 Score=55.69 Aligned_cols=39 Identities=38% Similarity=0.716 Sum_probs=34.5
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.+|||+|.+|+.|++.++ +.|+|+.+
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg-~~I~i~~~ 41 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAG-VRIQFKPD 41 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHC-CEEEEECC
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhC-CEEEEecC
Confidence 3568999999999999999999999999999 57888743
No 23
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.92 E-value=7.7e-06 Score=52.85 Aligned_cols=38 Identities=29% Similarity=0.613 Sum_probs=33.0
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
...+.||++.+|.+|||+|.+|+.|++.++ +.+++..+
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg-~~I~i~~~ 40 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAG-VKMILIQD 40 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSC-SEEEECCC
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhC-CeEEEecC
Confidence 467899999999999999999999999998 45777643
No 24
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.91 E-value=7.7e-06 Score=50.50 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=32.2
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
....+.||++.+|.+||++|.+|+.|++..+ +.|+|+
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg-~~I~i~ 53 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTA-TKIQIP 53 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTT-CCCBCC
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHC-CEEEeC
Confidence 4578999999999999999999999999987 456665
No 25
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.89 E-value=3.3e-06 Score=55.82 Aligned_cols=39 Identities=28% Similarity=0.590 Sum_probs=34.6
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
....+.||++.+|.+|||+|++|+.|++.+|+ .|+|..+
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga-~I~i~~~ 142 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGA-WVQLSQK 142 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSC-EEEECCC
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCC-EEEEeCC
Confidence 35689999999999999999999999999996 7888744
No 26
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.89 E-value=9.2e-06 Score=50.63 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=34.2
Q ss_pred eeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 4 YSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 4 f~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
.....+.||++.+|.+||++|++|+.|++..+ +.|+|..
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg-~~I~i~~ 54 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFK-VDIRFPQ 54 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHT-CEEECCC
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHC-CeEEecC
Confidence 35678999999999999999999999999987 6777763
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.87 E-value=9.7e-06 Score=52.74 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=34.2
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
-...+.||++.+|.+|||+|.+|+.|++.+++ .++++.+
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~-~I~i~~~ 41 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA-SIKIAPP 41 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTC-EEEECCC
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCC-eEEEcCC
Confidence 35678999999999999999999999999995 7888743
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6.6e-06 Score=50.45 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=33.2
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||.+.+|-||||+|.+|++|++.+++ .|+|..
T Consensus 10 ~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga-~I~I~~ 47 (83)
T 2dgr_A 10 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHT-YIVTPG 47 (83)
T ss_dssp EEEEEECCHHHHHHHHTTTTSSHHHHHHHTTC-EEECCC
T ss_pred eEEEEEeChHHeeeeECCCchHHHHHHHHhCC-eEEecC
Confidence 35678999999999999999999999999885 577764
No 29
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.74 E-value=8.3e-06 Score=51.11 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=36.5
Q ss_pred ceeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 3 EYSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 3 Ef~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
++.+..+.||++..+.+||++|++|++|.+..+-+.|+|..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~ 55 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV 55 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC
Confidence 47789999999999999999999999999999657788863
No 30
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.73 E-value=1e-05 Score=51.09 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.3
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
...+.||++.+|.|||++|++|+.|++..++ .|+|+.
T Consensus 18 ~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~-~I~I~~ 54 (104)
T 2ctk_A 18 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEV-NIHVPA 54 (104)
T ss_dssp EEEEECCHHHHHHHHCSSSHHHHHHHHHTCC-EEECCC
T ss_pred EEEEEEChHHccceeCCCchHHHHHHHHHCC-EEEecC
Confidence 4678999999999999999999999999874 577763
No 31
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.69 E-value=1.6e-05 Score=52.47 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=34.7
Q ss_pred eeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCC
Q psy986 4 YSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44 (71)
Q Consensus 4 f~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~ 44 (71)
.....+.||.+.+|.+|||+|.+|+.|++.+++ .|+|+.+
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~-~I~i~~~ 44 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGA-TIKLSKS 44 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC-EEEECCT
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCC-eEEEecC
Confidence 356789999999999999999999999999984 5888643
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=1.2e-05 Score=52.21 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=33.7
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
....+.||++.+|.+|||+|.+|+.|++.+++ .++++.
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~-~I~i~~ 42 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGA-RINISE 42 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCS-EEEEEC
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCC-EEEEcC
Confidence 35689999999999999999999999999995 688873
No 33
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.26 E-value=0.0002 Score=45.13 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=35.3
Q ss_pred eeeeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 4 YSEESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 4 f~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
+....|.||+.+-+.+||++|.+|+.||+....+.|++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~ 65 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE 65 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC
Confidence 4568899999999999999999999999988667887763
No 34
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.13 E-value=0.00024 Score=46.68 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=28.4
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhc
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.+++.||.+.+|-+||++|.+|++|++.++
T Consensus 5 ~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 5 HEQFIVREDLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp EEEEECCGGGHHHHHCGGGHHHHHHHTSTT
T ss_pred EEEEEECCcceeeEECCChhHHHHHHHHHC
Confidence 467899999999999999999999999999
No 35
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0026 Score=41.49 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=31.0
Q ss_pred eeeeeeeeCCC-------ccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 4 YSEESLQVPRN-------LVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 4 f~e~~l~V~~~-------dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
+.++.|.||-+ .+|+|||.+|.+||.|....| +.|.|.+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG-~kI~I~G 56 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETG-AKVFLRG 56 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHC-CEEEEES
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHC-CEEEEec
Confidence 45666777654 789999999999999999988 4566654
No 36
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.42 E-value=0.001 Score=47.03 Aligned_cols=36 Identities=25% Similarity=0.611 Sum_probs=32.1
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
..+.||++-+|.+||++|.+|++|.+.+| +.|+++.
T Consensus 36 ~~i~IP~~kig~lIG~gGk~Ik~I~e~tg-vkI~I~~ 71 (219)
T 2e3u_A 36 EYVKIPKDRIAVLIGKKGQTKKEIEKRTK-TKITIDS 71 (219)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHHHHT-EEEEECT
T ss_pred EEEEeCHHHhhhhhcccHHHHHHHHHHHC-cEEEEEc
Confidence 47999999999999999999999999988 5677763
No 37
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.20 E-value=0.0018 Score=42.56 Aligned_cols=38 Identities=24% Similarity=0.619 Sum_probs=31.9
Q ss_pred eeeeeeeCCC------ccCcccccCchhHHHHHhhhceeEEeecC
Q psy986 5 SEESLQVPRN------LVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 5 ~e~~l~V~~~------dvGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
..+.|.||.+ .+|++||.+|+++|.|-.-.|+ .|.|.+
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~-kI~Irg 50 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNA-KIMIRG 50 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCC-EEEEEE
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCC-eEEecC
Confidence 4577899988 8999999999999999999885 466643
No 38
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=95.96 E-value=0.002 Score=51.60 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.8
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
...++||++.+|.+||++|++|+.|.+..|+ .|+|+
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~-~I~I~ 603 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGV-TISQV 603 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCC-EEEEC
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCC-EEEEc
Confidence 3578999999999999999999999998886 57776
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.55 E-value=0.0028 Score=44.77 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=23.3
Q ss_pred ccCcccccCchhHHHHHhhhceeEEeec
Q psy986 15 LVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 15 dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
.+|++|||+|+++++|...+|+ .+.|.
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~-~I~v~ 165 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGA-SVSVY 165 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCC-EEEEE
T ss_pred hhheeECCCchHHHHHHHHhCc-eEEEC
Confidence 5899999999999999999985 56664
No 40
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=95.53 E-value=0.011 Score=39.67 Aligned_cols=37 Identities=27% Similarity=0.633 Sum_probs=30.0
Q ss_pred eeeeeeCCCc------cCcccccCchhHHHHHhhhceeEEeecC
Q psy986 6 EESLQVPRNL------VGKVIGKNGRIIQEIVDKSGVVRVKIEG 43 (71)
Q Consensus 6 e~~l~V~~~d------vGKVIGk~Gr~ikaIr~~~~a~~iki~~ 43 (71)
.+.|.||-+. +|++||.+|+++|.|-...|+ .|.|.|
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~-kI~IrG 45 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGC-KIMVRG 45 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSE-EEEEES
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCC-eEEEec
Confidence 4567777665 999999999999999999885 466654
No 41
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=95.01 E-value=0.0052 Score=42.82 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=22.4
Q ss_pred ccCcccccCchhHHHHHhhhceeEEeec
Q psy986 15 LVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 15 dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
.+||+|||+|+++++|....|+ .+.|.
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~-~I~v~ 134 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDT-YINVG 134 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTC-EEEEC
T ss_pred HhhheeCCCccHHHHHHHHHCc-eEEEc
Confidence 5899999999999999988884 44454
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=94.60 E-value=0.006 Score=49.78 Aligned_cols=35 Identities=37% Similarity=0.813 Sum_probs=0.0
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
..+++|++.+|.|||++|++|++|.+..|+ .|+|+
T Consensus 572 ~~~~i~~~ki~~vig~gg~~i~~i~~~tg~-~idi~ 606 (726)
T 4aid_A 572 ETINIPTDKIREVIGSGGKVIREIVATTGA-KVDIN 606 (726)
T ss_dssp ------------------------------------
T ss_pred EEEeCCHHHHHhhcCCCchhHHHHHHHHCC-ceeEE
Confidence 578999999999999999999999988876 45555
No 43
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.77 E-value=0.02 Score=46.53 Aligned_cols=35 Identities=26% Similarity=0.659 Sum_probs=0.0
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
..+++|++.+|.+||++|++|++|.+..|+ .++|+
T Consensus 562 ~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~-~IdI~ 596 (723)
T 3cdi_A 562 HTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIE 596 (723)
T ss_dssp ------------------------------------
T ss_pred EEEEECHHHhcccccccceeeeeeehhhCc-eEEec
Confidence 568899999999999999999999998884 46665
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=91.18 E-value=0.13 Score=35.68 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=31.4
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
...+.||++-+|-+||+.|.+++.|.+.++ +.++++
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g-~~i~id 40 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTG-TVITVD 40 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHT-EEEEEE
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHC-cEEEEE
Confidence 368999999999999999999999999887 456665
No 45
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=90.88 E-value=0.11 Score=34.68 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.9
Q ss_pred eeeeeeeCCCccCcccccCchhHHHHHhhhc
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
....+.||+++.+..|||+|+.++-...+.+
T Consensus 103 ~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg 133 (144)
T 2cxc_A 103 KQVVIKVSEDDKGAAIGKGGKNVKRARLVLS 133 (144)
T ss_dssp EEEEEEECTTTHHHHHCGGGHHHHHHHHHHH
T ss_pred EEEEEEEChHHhhhccCCCCHHHHHHHHHhC
Confidence 3457899999999999999999998887766
No 46
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.54 E-value=0.022 Score=46.56 Aligned_cols=35 Identities=29% Similarity=0.650 Sum_probs=10.8
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
..+++|++.+|.+||++|++|+.|++..|+. |+|+
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~-IdI~ 634 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAE-ITIE 634 (757)
T ss_dssp CCC------------------CTTCCCCCSC-C---
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCE-EEec
Confidence 4689999999999999999999999888864 4444
No 47
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=90.31 E-value=0.1 Score=35.20 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=23.8
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhh
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKS 34 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~ 34 (71)
..+.+.-+++|-+|||.|.|.+|+--++
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHH
Confidence 3567788999999999999999987655
No 48
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=89.90 E-value=0.22 Score=33.32 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
-.+-|++.++|..||++|..+|+|...+ --.|+|-..++
T Consensus 38 ~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~s~ 76 (144)
T 2cxc_A 38 LIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEYSS 76 (144)
T ss_dssp EEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEECCS
T ss_pred EEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEcCC
Confidence 3577889999999999999999999888 45677643333
No 49
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=88.50 E-value=0.13 Score=39.22 Aligned_cols=36 Identities=8% Similarity=0.237 Sum_probs=31.0
Q ss_pred eeeeeeeCCCccCcccccCc--hhHHHHHhhhceeEEee
Q psy986 5 SEESLQVPRNLVGKVIGKNG--RIIQEIVDKSGVVRVKI 41 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~G--r~ikaIr~~~~a~~iki 41 (71)
...++.||+.+.+.+|||+| ..|+.|++..+ +.|++
T Consensus 30 VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtg-v~I~f 67 (376)
T 3n89_A 30 VTLNMEFESQYYSLMTSDNGDHENVASIMAETN-TLIQL 67 (376)
T ss_dssp EEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHT-CEEEC
T ss_pred EEEEEEEchhhhhhhccCCChHHHHHHHHHHhC-CeEEC
Confidence 34578899999999999999 99999999886 56666
No 50
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=88.48 E-value=0.07 Score=38.09 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=26.3
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhcee
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVV 37 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~ 37 (71)
..+.+..+|.|.+|||+|.+.+|+..++..+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~ 124 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLV 124 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHH
Confidence 3567788899999999999999998877654
No 51
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=88.43 E-value=0.91 Score=29.96 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred eeeeeeeCCCccCcccccCchhHHHH-Hhhh
Q psy986 5 SEESLQVPRNLVGKVIGKNGRIIQEI-VDKS 34 (71)
Q Consensus 5 ~e~~l~V~~~dvGKVIGk~Gr~ikaI-r~~~ 34 (71)
.++.+++||+..|++|| .+|+++ .+..
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 57889999999999999 688885 7766
No 52
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=88.35 E-value=0.32 Score=35.39 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=32.0
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCCC
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEP 47 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e~ 47 (71)
..+.||+++.+..|||+|++++--..+.+- .++|....+.
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~-~idI~~~~~~ 225 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGW-RIDIRGDAPP 225 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSC-EEEEEESSCC
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCC-EecceEHHHh
Confidence 568899999999999999999988888773 5666544443
No 53
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=85.62 E-value=0.37 Score=36.64 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=30.7
Q ss_pred eeeeeeCCCccCcccccCc--hhHHHHHhhhceeEEeec
Q psy986 6 EESLQVPRNLVGKVIGKNG--RIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~G--r~ikaIr~~~~a~~iki~ 42 (71)
...+.|++.....+|||+| ..|+.||+..|+ .|.+-
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv-~I~FP 224 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTT-IISYP 224 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTC-EEECC
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCC-EEECC
Confidence 3478999999999999999 678999999985 77763
No 54
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=82.15 E-value=0.85 Score=34.68 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=32.0
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
...+.||+++.+..|||+|+.++-...+.|- .++|..+.+
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~-~idI~~~~~ 347 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGW-RIDIRGDAP 347 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCC-EEEEEESSC
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCC-eeeeeEHHH
Confidence 3568899999999999999999988888774 566654443
No 55
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=81.15 E-value=0.65 Score=34.85 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.3
Q ss_pred eeeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 6 e~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
.-.+.||+++.+..|||+|++++--..+.|- .++|.
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~-~idi~ 339 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGW-KIDIK 339 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSC-EEEEE
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCC-Eecee
Confidence 3568899999999999999999988877773 45554
No 56
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=71.75 E-value=0.9 Score=31.78 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=21.0
Q ss_pred eeeeCC-CccCcccccCchhHHHHHhhhc
Q psy986 8 SLQVPR-NLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 8 ~l~V~~-~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.+.|.+ +..|-+|||+|..|++|.+.+.
T Consensus 243 ~i~ve~~~~k~i~ig~~g~~ik~i~~~ar 271 (308)
T 3iev_A 243 EIIVDRENLKPIIIGKKGQRLKEIGKRAR 271 (308)
T ss_dssp EEEESSGGGHHHHHCGGGHHHHHHHHHHH
T ss_pred EEEEccCCcceEEEcCCcHHHHHHHHHHH
Confidence 344444 4788899999999999986543
No 57
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=71.07 E-value=1.6 Score=29.54 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.9
Q ss_pred eeeeeCCCccCcccccCchhHHHHHhhhceeEEeec
Q psy986 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIE 42 (71)
Q Consensus 7 ~~l~V~~~dvGKVIGk~Gr~ikaIr~~~~a~~iki~ 42 (71)
..++|....+|.+||++|..|..|-..+.+ -+.++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqT-LIqV~ 92 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHT-LIHVN 92 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTS-EEEEE
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcce-eEEEe
Confidence 357899999999999999999999887775 34444
No 58
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=56.27 E-value=4.1 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCCccCcccccCchhHHHHHhhhc
Q psy986 12 PRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 12 ~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.-.--|-|||++|..|..++..+.
T Consensus 42 ~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 42 LATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp EESCHHHHHCGGGHHHHHHHHHHH
T ss_pred EeCCCceEEcCCcHHHHHHHHHHH
Confidence 334468899999999998886544
No 59
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=52.89 E-value=5.3 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=27.6
Q ss_pred CccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 14 NLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 14 ~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
+-||..||++|..|++|...++--.|+|-..++
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~ 281 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD 281 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCC
Confidence 458999999999999999999778888865444
No 60
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=45.31 E-value=7.3 Score=27.25 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.3
Q ss_pred CccCcccccCchhHHHHHhhhc
Q psy986 14 NLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 14 ~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
+..|-+|||+|..+|+|.+.+.
T Consensus 240 ~~k~iiig~~g~~lk~i~~~ar 261 (301)
T 1wf3_A 240 SQKAIVIGEGGRKIKEIGQATR 261 (301)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHH
Confidence 4557799999999999875443
No 61
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=45.07 E-value=8.5 Score=27.85 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=24.8
Q ss_pred CccCcccccCchhHHHHHhhhceeEEeecCCCC
Q psy986 14 NLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNE 46 (71)
Q Consensus 14 ~dvGKVIGk~Gr~ikaIr~~~~a~~iki~~~~e 46 (71)
+=||--||++|..||+|..-+.-=.|+|-..++
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~ 158 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD 158 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC
Confidence 348999999999999996555556777754444
No 62
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.64 E-value=12 Score=26.32 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=17.6
Q ss_pred CccCcccccCchhHHHHHhhhc
Q psy986 14 NLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 14 ~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.--|-|||++|+.|+.++..+.
T Consensus 49 ~rPg~vIG~~G~~I~~L~~~l~ 70 (210)
T 3j20_C 49 ANPGYVIGRGGRRIRELTRILE 70 (210)
T ss_dssp SCHHHHHCSSSHHHHHHHHHHH
T ss_pred CCCceEEcCCchhHHHHHHHHH
Confidence 3458899999999999886553
No 63
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=36.71 E-value=13 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=19.3
Q ss_pred eCCCccCcccccCchhHHHHHhhhc
Q psy986 11 VPRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 11 V~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
+...--|-|||++|+.|+.++..+.
T Consensus 53 I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 53 IKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp EEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred EEcCCCceEECCCchHHHHHHHHHH
Confidence 3334568899999999999987654
No 64
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=34.19 E-value=13 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=19.2
Q ss_pred eCCCccCcccccCchhHHHHHhhhc
Q psy986 11 VPRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 11 V~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
+.-.--|-|||++|+.|+.++..+.
T Consensus 50 I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 50 IRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEeCCCceEEcCCchhHHHHHHHHH
Confidence 3344468899999999999986654
No 65
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=33.29 E-value=2.5 Score=27.69 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.4
Q ss_pred eCCCccCcccccCchhH
Q psy986 11 VPRNLVGKVIGKNGRII 27 (71)
Q Consensus 11 V~~~dvGKVIGk~Gr~i 27 (71)
++++..|++||+.|.+|
T Consensus 30 i~~~~i~~vig~~G~~I 46 (171)
T 1y14_B 30 LLEEVEGSCTGKFGYIL 46 (171)
T ss_dssp HHHHHTTEEETTTEEEE
T ss_pred HHHHHcCcCcCCceEEE
Confidence 44455688999999888
No 66
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.78 E-value=14 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.4
Q ss_pred eCCCccCcccccCchhHHHHHhhhc
Q psy986 11 VPRNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 11 V~~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
+.-.--|-|||++|+.|+.++..+.
T Consensus 50 I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 50 IRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred EEeCCCceEEcCCchhHHHHHHHHH
Confidence 3445568899999999999886653
No 67
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=32.45 E-value=13 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.8
Q ss_pred CccCcccccCchhHHHHHhhhc
Q psy986 14 NLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 14 ~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.--|-|||++|+.|+.++..+.
T Consensus 70 ~rpg~viGk~G~~i~~L~~~l~ 91 (206)
T 3r8n_C 70 ARPGIVIGKKGEDVEKLRKVVA 91 (206)
T ss_dssp SCHHHHHCSSSHHHHHHHHHHH
T ss_pred CCCCccccCcchHHHHHHHHHH
Confidence 4457899999999999986554
No 68
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=29.66 E-value=16 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.383 Sum_probs=18.1
Q ss_pred CCccCcccccCchhHHHHHhhhc
Q psy986 13 RNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 13 ~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
-.--|-|||++|+.|+.++..+.
T Consensus 70 t~rPg~vIGkkG~~I~~L~~~L~ 92 (233)
T 3i1m_C 70 TARPGIVIGKKGEDVEKLRKVVA 92 (233)
T ss_dssp ESCHHHHHCSTTHHHHHHHHHHH
T ss_pred ECCCCccccCcchHHHHHHHHHH
Confidence 34457899999999999986554
No 69
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.41 E-value=14 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCccCcccccCchhHHHHHhhhc
Q psy986 13 RNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 13 ~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
-.--|-|||++|+.|+.++..+.
T Consensus 52 tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 52 ATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp ESCHHHHHCGGGHHHHHHHHHHH
T ss_pred eCCCceEEcCCchHHHHHHHHHH
Confidence 34468899999999999987654
No 70
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.48 E-value=26 Score=25.02 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.5
Q ss_pred CCccCcccccCchhHHHHHhhhc
Q psy986 13 RNLVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 13 ~~dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
-.--|-+||++|+.|+.++..+.
T Consensus 70 tarPg~vIGkkG~~I~~L~~~L~ 92 (239)
T 2vqe_C 70 VAKPGVVIGRGGERIRVLREELA 92 (239)
T ss_dssp ESCGGGTSCSSSSHHHHHHHHHH
T ss_pred eCCCcceecCCchHHHHHHHHHH
Confidence 34568999999999999987654
No 71
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.04 E-value=23 Score=24.75 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=17.0
Q ss_pred ccCcccccCchhHHHHHhhhc
Q psy986 15 LVGKVIGKNGRIIQEIVDKSG 35 (71)
Q Consensus 15 dvGKVIGk~Gr~ikaIr~~~~ 35 (71)
.-|-+||++|+.|+.++..+.
T Consensus 80 rPg~vIGk~g~~i~~L~~~l~ 100 (218)
T 3bbn_C 80 FPKLLIENRPQGVEDLKINVQ 100 (218)
T ss_dssp CTTTTSCSSSCTTHHHHHHHH
T ss_pred CCCcEecCCcHHHHHHHHHHH
Confidence 358899999999999886554
No 72
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=25.06 E-value=23 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.1
Q ss_pred Ccc-eeeeeeeeCCCccCcccc
Q psy986 1 MLE-YSEESLQVPRNLVGKVIG 21 (71)
Q Consensus 1 ~LE-f~e~~l~V~~~dvGKVIG 21 (71)
+|| +..-+|.||.+.+|.|+|
T Consensus 601 llEPi~~~~i~~p~~~~G~v~~ 622 (691)
T 1dar_A 601 ILEPIMRVEVTTPEEYMGDVIG 622 (691)
T ss_dssp EEEEEEEEEEEECTTTTTHHHH
T ss_pred EeeceEEEEEEEcHHHHhHHHH
Confidence 356 778899999999999997
No 73
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=25.00 E-value=7.3 Score=26.97 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.3
Q ss_pred eeCCCccCcccccCchhH
Q psy986 10 QVPRNLVGKVIGKNGRII 27 (71)
Q Consensus 10 ~V~~~dvGKVIGk~Gr~i 27 (71)
+++++..|++||+.|.+|
T Consensus 29 ~I~~~~ig~vIg~~G~vI 46 (215)
T 2b8k_G 29 KLLEEVEGSCTGKFGYIL 46 (215)
T ss_dssp HHHHSSTTCEETTTEEEE
T ss_pred cCCHHHCCeEcCCCCEEE
Confidence 445567789999999888
No 74
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=21.66 E-value=18 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=18.0
Q ss_pred Ccc-eeeeeeeeCCCccCcccc
Q psy986 1 MLE-YSEESLQVPRNLVGKVIG 21 (71)
Q Consensus 1 ~LE-f~e~~l~V~~~dvGKVIG 21 (71)
+|| +..-+|+||.+.+|+|+|
T Consensus 534 LLEPi~~veI~vP~~~~G~V~~ 555 (638)
T 3j25_A 534 LLEPYLSFKIYAPQEYLSRAYN 555 (638)
T ss_dssp CCCCCTTCEEEEETTTHHHHHH
T ss_pred EEcCcEEEEEEECHHHHHHHHH
Confidence 466 777899999999999986
No 75
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=21.10 E-value=17 Score=28.57 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.4
Q ss_pred Ccc-eeeeeeeeCCCccCcccc
Q psy986 1 MLE-YSEESLQVPRNLVGKVIG 21 (71)
Q Consensus 1 ~LE-f~e~~l~V~~~dvGKVIG 21 (71)
+|| +.+-++.||.+.+|.|++
T Consensus 403 llEP~~~~~i~vP~e~~G~v~~ 424 (600)
T 2ywe_A 403 VEEPFVLVTIITPKEYVGPIIQ 424 (600)
T ss_dssp EEEEEEEEEEEEEGGGHHHHHH
T ss_pred ccCCeEEEEEEecHHHHHHHHH
Confidence 356 788899999999999998
No 76
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=20.43 E-value=58 Score=19.27 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=12.3
Q ss_pred CCCCCCccceEEeeeE
Q psy986 51 LPREEGQVPFMVLTKT 66 (71)
Q Consensus 51 ~~~~~~~vpF~~vGt~ 66 (71)
...+.+++||+|-|+.
T Consensus 18 s~G~~C~FPF~y~g~~ 33 (72)
T 1j7m_A 18 SGGAPCVFPFTFLGNK 33 (72)
T ss_dssp SSSCCCCSSEEETTEE
T ss_pred CCCCccCCCEEECCEE
Confidence 3446678999999876
Done!