RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy986
(71 letters)
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 40.2 bits (94), Expect = 7e-07
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQP 49
+ VP NLVG ++GK G+ + E + +G R++I E P
Sbjct: 7 MAVPENLVGAILGKGGKTLVEYQELTG-ARIQISKKGEFLP 46
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.0 bits (93), Expect = 1e-06
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPR 53
E L VP+ VG++IG+ G I+ I SG ++ + ++E L R
Sbjct: 17 EQLSVPQRSVGRIIGRGGETIRSICKASG-AKITCDKESEGTLLLSR 62
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 39.1 bits (91), Expect = 2e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPT 50
E + VP G +IGK G I+ I +SG R++++ + P
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSG-ARIELQRNPPPNAD 45
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 38.6 bits (90), Expect = 2e-06
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQP 49
E +VP +VG +IG+ G I I +SG +++I D+ P
Sbjct: 10 EEYKVPDGMVGFIIGRGGEQISRIQQESG-CKIQIAPDSGGLP 51
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 38.7 bits (90), Expect = 3e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEP 47
E + +P L +IG GR+I+ I+++ G V + +
Sbjct: 11 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG 52
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 37.9 bits (88), Expect = 5e-06
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQP 49
L +P NL+G +IG+ G I EI SG ++KI E
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSG-AQIKIANPVEGSS 45
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 37.4 bits (87), Expect = 6e-06
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTL 51
L + VG +IGK G ++++ ++SG R+ I N P+ +
Sbjct: 8 LLMHGKEVGSIIGKKGESVKKMREESG-ARINISEGNCPERII 49
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 36.7 bits (85), Expect = 2e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEP 47
++VP +L VIG+ G I++++D+ V + +
Sbjct: 11 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFE-VNIHVPAPELQ 51
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 35.8 bits (83), Expect = 2e-05
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
++++P + +G+VIG ++I +I + +G + IE D
Sbjct: 5 ITVKIPVDKIGEVIGPKRQMINQIQEDTG-AEITIEDD 41
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 36.2 bits (84), Expect = 2e-05
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTL 51
++ +P+ VIGKNG +Q++ K+ +++I ++P +
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTA-TKIQIPRPDDPSNQI 55
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 36.0 bits (83), Expect = 3e-05
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPT 50
+ S+ V K+IG+ G +I +I + V ++ ++
Sbjct: 11 KLSVTVDPKYHPKIIGRKGAVITQIRLEHD-VNIQFPDKDDGNQP 54
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 36.1 bits (83), Expect = 3e-05
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPRE 54
+ + +P + G VIGK G I+++ +++G V++ + D +
Sbjct: 10 QEIMIPASKAGLVIGKGGETIKQLQERAG-VKMVMIQDGPQNTGADKP 56
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 35.2 bits (81), Expect = 5e-05
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQP 49
+ +PR VG VIG+NG +I++I + +G VR++ + D+ P
Sbjct: 7 VPIPRFAVGIVIGRNGEMIKKIQNDAG-VRIQFKPDDGTTP 46
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 34.5 bits (79), Expect = 9e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQP 49
+ +P++L G +IGK G+ I++I +SG +KI+ E
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESG-ASIKIDEPLEGSE 47
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 34.8 bits (80), Expect = 1e-04
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
++V +G VIG G + EI+ ++G + ++ +N
Sbjct: 7 VKVKPERLGAVIGPRGEVKAEIMRRTG-TVITVDTEN 42
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 34.3 bits (79), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEP 47
+ + +IGK+G I I D+ V V+I D+E
Sbjct: 6 YVEINIDHKFHRHLIGKSGANINRIKDQYK-VSVRIPPDSEK 46
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 34.0 bits (78), Expect = 1e-04
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPT 50
E + + + ++IG G+ I++I+D+ V ++ P P
Sbjct: 11 SEDVPLDHRVHARIIGARGKAIRKIMDEFK-VDIRFPQSGAPDPN 54
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 34.1 bits (78), Expect = 2e-04
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 6 EESLQVPRNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEP 47
S+ P L +IGK G+ + +I + V ++ +
Sbjct: 22 VSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDK 63
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 33.9 bits (78), Expect = 2e-04
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVV-------RVKIEGDNE 46
+ + V +VIGK G +I+ + + V + + GD
Sbjct: 3 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRR 49
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 32.4 bits (74), Expect = 6e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 9 LQVPRNLVGKVIGKNGRIIQEIVDKSGVV-------RVKIEGDNE 46
+ + V +VIGKN + + + KSG R+ +
Sbjct: 5 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSR 49
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 32.0 bits (73), Expect = 0.001
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGVV-------RVKIEGDNE 46
+ +++ V +VIG+ +++ + +K+ R+ +E NE
Sbjct: 3 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNE 49
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 30.6 bits (69), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 7 ESLQVPRNLVGKVIGKNGRIIQEIVDKSGV 36
E V +L+G IG +G IQ+ GV
Sbjct: 10 EEFVVREDLMGLAIGTHGSNIQQARKVPGV 39
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
{Aeropyrum pernix [TaxId: 56636]}
Length = 104
Score = 28.1 bits (63), Expect = 0.041
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 13 RNLVGKVIGKNGRIIQEIVDKSGVVRVKIEGD 44
+ + G++IG+ GR + I + + + +
Sbjct: 21 KRIKGRIIGEGGRARRTIEEMTD-TYINVGEY 51
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 24.4 bits (53), Expect = 1.2
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 14 NLVGKVIGKNGRIIQEIVDKSGVVRVKIEGDN 45
N VG+++G G +++ ++G ++ + G
Sbjct: 17 NFVGRILGPRGLTAKQLEAETG-CKIMVRGKG 47
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 24.5 bits (52), Expect = 1.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 12 PRNLVGKVIGKNGRII 27
VG VI KNGRII
Sbjct: 20 CSWKVGAVIEKNGRII 35
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 23.6 bits (51), Expect = 2.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 14 NLVGKVIGKNGRIIQEIVDKSGVVRVKIEG 43
N VG +IG G ++ I + ++ I G
Sbjct: 18 NFVGLLIGPRGNTLKNIEKECN-AKIMIRG 46
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 23.7 bits (51), Expect = 2.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 46 EPQPTLPREEGQVPFMVLTKTV 67
+P P G +P+++ T
Sbjct: 488 QPGVYPPHAAGHLPYVLYDPTA 509
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 23.0 bits (49), Expect = 3.8
Identities = 3/23 (13%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 14 NLVGKVIGKNGRII---QEIVDK 33
++ K+ R + ++I +
Sbjct: 3 GILNKMFDPTKRTLNRYEKIAND 25
>d2chha1 b.115.1.1 (A:1-113) Mannose-specific lectin RS-IIL
{Ralstonia solanacearum [TaxId: 305]}
Length = 113
Score = 22.1 bits (47), Expect = 7.2
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 15 LVGKVIGKNGRIIQEIVDKSGVVRVKIEGDNEPQPTLPR 53
G Q + SG +++++ + +P +
Sbjct: 40 FTGSGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSDLVSN 78
>d3b77a1 b.55.1.13 (A:14-203) Uncharacterized protein Exig2160
{Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Length = 190
Score = 22.1 bits (47), Expect = 8.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1 MLEYSEESLQVPRNLVGKVIGKNGRIIQE 29
MLE++ SL ++G + + + Q
Sbjct: 129 MLEFANSSLNHSVTILGGLRQGDMNVPQT 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.137 0.376
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 255,124
Number of extensions: 10138
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 31
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)