BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9862
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 122 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181
+ LDL+ NL ++ N F + L LYL N LPAEI NL NL++L L N L
Sbjct: 225 LWHALDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL 282
Query: 182 IEIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
+P ELG+ +L+ + N +T LP E GNL
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
++ K DF L L N L E+P E+ NLS LR L + NRLT LP E+G S
Sbjct: 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG--------SCF 293
Query: 281 KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLA 340
++ + +N + +P E GNL L+ L ++ N P E L +
Sbjct: 294 QLKY------------FYFFDNMVTTLPWEFGNLCNLQFLGVEGN-----PLEKQFLKIL 336
Query: 341 SHKSVLKMDF 350
+ KSV + F
Sbjct: 337 TEKSVTGLIF 346
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHK 220
+ A I L L L N L E+P E+ NL+ LR L + NRLT LP E+G
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-------- 290
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
S ++ + +N + +P E GNL L+ L ++ N P E L + + KSV
Sbjct: 291 SCFQLKY---FYFFDNMVTTLPWEFGNLCNLQFLGVEGN-----PLEKQFLKILTEKSVT 342
Query: 281 KMDF 284
+ F
Sbjct: 343 GLIF 346
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
N L+ LP L VLDL++N L SLP L+ Y DN LP E GN
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 168 LKNLQILVLRENDL 181
L NLQ L + N L
Sbjct: 315 LCNLQFLGVEGNPL 328
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 20/185 (10%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPA 163
C +L+++P A + LDL N L+ SLP F L LR LYL DN + LPA
Sbjct: 23 CSSKKLTAIPSNIPA--DTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 164 EI-GNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
I LKNL+ L + +N L +P L L EL + N+L LPP + S
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------FDS 131
Query: 222 VLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
+ K+ + L L N+L +PK L+ L+EL + N+L +P G D + L
Sbjct: 132 LTKLTY---LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLTELKTL 186
Query: 281 KMDFN 285
K+D N
Sbjct: 187 KLDNN 191
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 31/127 (24%)
Query: 231 LVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPP----EIGNLDLASHKSVLKMDFN 285
L L+ N L +P K L++LR L++ N+L LP E+ NL+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL----------- 90
Query: 286 PWVTPIADQLQLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 344
WVT +N L +P L L EL + N+L LPP + D + +
Sbjct: 91 -WVT-----------DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLT 136
Query: 345 VLKMDFN 351
L + +N
Sbjct: 137 YLSLGYN 143
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 292 ADQLQLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEI 334
AD +L L+ N L +P K L++LR L++ N+L LP I
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L NDL E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177
G PVL LDL++N L QSLP + +TL AL VL L +L + LR
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPAL-------TVLDVSFNRLTSLPLGALR 121
Query: 178 ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
L L+EL+++ N L LPP + L + K L L ND
Sbjct: 122 ------------GLGELQELYLKGNELKTLPPGL----LTPTPKLEK------LSLANND 159
Query: 238 LIEIPKELGN-LSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF---NPWVT 289
L E+P L N L L L +Q N L +P SH +L F NPW+
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 89/224 (39%), Gaps = 60/224 (26%)
Query: 157 DFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PE 210
D LP ++ K+ IL L EN L L TRL +L++ LT L P
Sbjct: 21 DLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV 78
Query: 211 IGNLDLASHK--------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELH 255
+G LDL+ ++ +VL + FN L +P L L L+EL+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELY 130
Query: 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-L 314
++ N L LPP + +TP +L L NDL E+P L N L
Sbjct: 131 LKGNELKTLPPGL-------------------LTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 315 SRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L L +Q N L +P SH +L F NPW+
Sbjct: 172 ENLDTLLLQENSLYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRDLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 55/243 (22%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE-TLRALYLGDNDFE--VLPAEIGNLKN-LQILVLRE 178
L+VLDL++N + + LP + L +L L L N+F +LP N KN LQ L L+
Sbjct: 345 LKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 179 NDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
N +IP L N + L LH+ N L+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSG------------------------------- 432
Query: 238 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ- 296
IP LG+LS+LR+L + N L P+ L L +DFN I L
Sbjct: 433 --TIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 297 ------LVLRENDLI-EIPKELGNLSRLRELHIQANRLTV-LPPEIGNLDLASHKSVLKM 348
+ L N L EIPK +G L L L + N + +P E+G+ +S++ +
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWL 543
Query: 349 DFN 351
D N
Sbjct: 544 DLN 546
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 125 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQILVLRENDL-I 182
LD++YN L+ +P + L L LG ND +P E+G+L+ L IL L N L
Sbjct: 636 FLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLD 215
IP+ + LT L E+ + N L+ PE+G +
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 107/273 (39%), Gaps = 57/273 (20%)
Query: 106 RMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPA 163
N LS ++P G+ L L L N L E +P ++TL L L ND +P+
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 164 EIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTV-LPPEIGNLDLASHKS 221
+ N NL + L N L EIPK +G L L L + N + +P E+G+ +S
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RS 539
Query: 222 VLKMDFN--------PWLVLRENDLIE----------------IPKELGNLSRLRELHI- 256
++ +D N P + +++ I + KE L E
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 257 ---QANRLTVL-PPEIGNLDLASHKS----------VLKMDFNPWVTPIADQLQ------ 296
Q NRL+ P I + H S L M +N I ++
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659
Query: 297 -LVLRENDLI-EIPKELGNLSRLRELHIQANRL 327
L L ND+ IP E+G+L L L + +N+L
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 161 LPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+P EIG++ L IL L ND+ IP E+G+L L L + +N+L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------- 694
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 272
IP+ + L+ L E+ + N L+ PE+G +
Sbjct: 695 --------------------RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 55/243 (22%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE-TLRALYLGDNDFE--VLPAEIGNLKN-LQILVLRE 178
L+VLDL++N + + LP + L +L L L N+F +LP N KN LQ L L+
Sbjct: 342 LKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 179 NDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
N +IP L N + L LH+ N L+
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSG------------------------------- 429
Query: 238 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ- 296
IP LG+LS+LR+L + N L P+ L L +DFN I L
Sbjct: 430 --TIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 297 ------LVLRENDLI-EIPKELGNLSRLRELHIQANRLTV-LPPEIGNLDLASHKSVLKM 348
+ L N L EIPK +G L L L + N + +P E+G+ +S++ +
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWL 540
Query: 349 DFN 351
D N
Sbjct: 541 DLN 543
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 125 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQILVLRENDL-I 182
LD++YN L+ +P + L L LG ND +P E+G+L+ L IL L N L
Sbjct: 633 FLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLD 215
IP+ + LT L E+ + N L+ PE+G +
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 47/273 (17%)
Query: 107 MNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAE 164
N LS ++P G+ L L L N L E +P ++TL L L ND +P+
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 165 IGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTV-LPPEIGN------LDL 216
+ N NL + L N L EIPK +G L L L + N + +P E+G+ LDL
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 217 -----------ASHKSVLKMDFN-----PWLVLRENDLIEIPKELGNLSRLRELHI-QAN 259
A K K+ N ++ ++ + + + GNL + + Q N
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 260 RLTVL-PPEIGNLDLASHKS----------VLKMDFNPWVTPIADQLQ-------LVLRE 301
RL+ P I + H S L M +N I ++ L L
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 302 NDLI-EIPKELGNLSRLRELHIQANRLTVLPPE 333
ND+ IP E+G+L L L + +N+L P+
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 161 LPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+P EIG++ L IL L ND+ IP E+G+L L L + +N+L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------- 691
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 272
IP+ + L+ L E+ + N L+ PE+G +
Sbjct: 692 --------------------RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 37/193 (19%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
CR R +S+P G P + ++N + PG F L L+ LYLG N LP
Sbjct: 26 CRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
+ +LT+L L + N+LTVLP + D H L
Sbjct: 83 V----------------------FDSLTQLTVLDLGTNQLTVLPSAV--FDRLVHLKELF 118
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
M N L E+P+ + L+ L L + N+L +P G D S + +
Sbjct: 119 MCCN--------KLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFG 168
Query: 285 NPWVTPIADQLQL 297
NPW D + L
Sbjct: 169 NPWDCECRDIMYL 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 231 LVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV- 288
L L +N + ++ P +L L+EL++ +N+L LP +G D + +VL + N
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTNQLTV 102
Query: 289 --TPIADQL----QLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 342
+ + D+L +L + N L E+P+ + L+ L L + N+L +P G D S
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSS 160
Query: 343 KSVLKMDFNPW 353
+ + NPW
Sbjct: 161 LTHAYLFGNPW 171
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 163
C +S+P G A LDL N+L +SLP G F L +L LYLG N + LP
Sbjct: 14 CYSQGRTSVPTGIPA--QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPN 69
Query: 164 EIGN-LKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLP 208
+ N L +L L L N L +P LT+L+EL + N+L LP
Sbjct: 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 40/179 (22%)
Query: 114 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173
P F L L L L E PG F L L+ LYL DN+ + LP
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNNLQALP----------- 144
Query: 174 LVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVL 233
+N ++LGNLT L + NR+ +P + + + +D L+L
Sbjct: 145 ----DNTF----RDLGNLT---HLFLHGNRIPSVPEH-------AFRGLHSLDR---LLL 183
Query: 234 RENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV--LKMDFNPWVT 289
+N + + P +L RL L++ AN L++LP E+ L +S+ L+++ NPWV
Sbjct: 184 HQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV----LVPLRSLQYLRLNDNPWVC 238
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N+L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N+L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 40/179 (22%)
Query: 114 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173
P F L L L L E PG F L L+ LYL DN + LP +
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTF------- 148
Query: 174 LVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVL 233
++LGNLT L + NR++ +P + + + +D L+L
Sbjct: 149 ------------RDLGNLT---HLFLHGNRISSVPER-------AFRGLHSLDR---LLL 183
Query: 234 RENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV--LKMDFNPWVT 289
+N + + P +L RL L++ AN L+ LP E LA +++ L+++ NPWV
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA----LAPLRALQYLRLNDNPWVC 238
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N+L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N+L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N+L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N+L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 40/179 (22%)
Query: 114 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173
P F L L L L E PG F L L+ LYL DN + LP +
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTF------- 149
Query: 174 LVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVL 233
++LGNLT L + NR++ +P + + + +D L+L
Sbjct: 150 ------------RDLGNLT---HLFLHGNRISSVPER-------AFRGLHSLDR---LLL 184
Query: 234 RENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV--LKMDFNPWVT 289
+N + + P +L RL L++ AN L+ LP E LA +++ L+++ NPWV
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA----LAPLRALQYLRLNDNPWVC 239
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N+L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 89/224 (39%), Gaps = 60/224 (26%)
Query: 157 DFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PE 210
D LP ++ K+ IL L EN L L TRL +L++ LT L P
Sbjct: 21 DLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV 78
Query: 211 IGNLDLASHK--------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELH 255
+G LDL+ ++ +VL + FN L +P L L L+EL+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELY 130
Query: 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-L 314
++ N L LPP + +TP +L L N+L E+P L N L
Sbjct: 131 LKGNELKTLPPGL-------------------LTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 315 SRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L L +Q N L +P SH +L F NPW+
Sbjct: 172 ENLDTLLLQENSLYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRDLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N+LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 83/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ +LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRQLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N+LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 83/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ +LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRQLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAE-I 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + LP +
Sbjct: 88 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 145
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N+L E+P L N L L L +Q N L +P SH +L
Sbjct: 146 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 199
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 200 FAFLHGNPWLC 210
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 75 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 129
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N LT LP + N + +D L+
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-------GLENLDT---LL 179
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 180 LQENSLYTIPK 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ 91
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 92 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 143
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N+L E+P L N L L L +Q N
Sbjct: 144 L-------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 185 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 210
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ LT LPP DL ++L + N L+ +RL +L+
Sbjct: 15 EVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 62
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 63 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 119
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 120 ALRGLGELQELYLKGNELKTLPPGL 144
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N+LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 83/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ +LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRQLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVL-PAEI 165
N+L SLP P L VLD+++N L SLP G L L+ LYL N+ + L P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 166 GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L L N L E+P L N L L L +Q N L +P SH +L
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF----FGSH--LLP 198
Query: 225 MDF---NPWLV 232
F NPWL
Sbjct: 199 FAFLHGNPWLC 209
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQI 173
G PVL LDL++N L QSLP + +TL AL + D F L + + L LQ
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 174 LVLRENDLIEIPKELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
L L+ N+L +P L T +L +L + N+LT LP + N + +D L+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN-------GLENLDT---LL 178
Query: 233 LRENDLIEIPK 243
L+EN L IPK
Sbjct: 179 LQENSLYTIPK 189
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 83/212 (39%), Gaps = 58/212 (27%)
Query: 169 KNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLP-----PEIGNLDLASHK-- 220
K+ IL L EN L L TRL +L++ LT L P +G LDL+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 221 ------------SVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPE 267
+VL + FN L +P L L L+EL+++ N L LPP
Sbjct: 91 SLPLLGQTLPALTVLDVSFN--------RLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANR 326
+ +TP +L L N L E+P L N L L L +Q N
Sbjct: 143 L-------------------LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 327 LTVLPPEIGNLDLASHKSVLKMDF---NPWVT 355
L +P SH +L F NPW+
Sbjct: 184 LYTIPKGF----FGSH--LLPFAFLHGNPWLC 209
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
E++ +LT LPP DL ++L + N L+ +RL +L+
Sbjct: 14 EVNCDKRQLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLN 61
Query: 256 IQANRLTVLP-----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP-K 309
+ LT L P +G LDL SH + + P L + N L +P
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSF--NRLTSLPLG 118
Query: 310 ELGNLSRLRELHIQANRLTVLPPEI 334
L L L+EL+++ N L LPP +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGL 143
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 163
C L+S+P G + L+L N L QSLP G F L L L L N + LP
Sbjct: 14 CNSKGLTSVPTGIPSSATR--LELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 164 EI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
+ L L IL L EN L +P LT+L+EL + N+L +P I D +
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQ 127
Query: 222 VLKMDFNPW 230
+ + NPW
Sbjct: 128 KIWLHTNPW 136
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 43/237 (18%)
Query: 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQILVLREN 179
P +LDL N+++E +F L+ L AL L +N ++ L+ LQ L + +N
Sbjct: 54 PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 180 DLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP---------- 229
L+EIP L + L EL I NR+ +P G + + ++M NP
Sbjct: 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 230 -------WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 282
+L + E L IPK+L L ELH+ N++ + E DL + + ++
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELE----DLLRYSKLYRL 222
Query: 283 DFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
+Q++++ EN L L LRELH+ N+L+ +P + +L L
Sbjct: 223 GLG------HNQIRMI--ENG------SLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 140 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEI 184
G+ L TLR L+L +N +PA + +LK LQ++ L N++ ++
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-----DFEVLPAEIGNLKNLQILVLR 177
LE LD++ N+LN + E++ L L N F LP ++ ++L L
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLH 458
Query: 178 ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
N ++ IPK++ +L L+EL++ +N+L +P G D + + + NPW
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLHDNPW 509
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 139 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL---IEIPKELGNLTRLR 195
P +F L + ++ D+ F+ LK LQ L+L+ N L ++ N++ L
Sbjct: 352 PSSFTFLNFTQNVF-TDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406
Query: 196 ELHIQAN--------RLTVLPPEIGNLDLASH---KSVLKMDFNP---WLVLRENDLIEI 241
L + N R I L+L+S+ SV + P L L N ++ I
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LPPKVKVLDLHNNRIMSI 465
Query: 242 PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
PK++ +L L+EL++ +N+L +P G D + + + NPW
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLHDNPW 509
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 299 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 358
L N ++ IPK++ +L L+EL++ +N+L +P G D + + + NPW
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLHDNPW----- 509
Query: 359 DQLQVGISHVLDYIRSET 376
D GI ++ ++I +
Sbjct: 510 DCTCPGIRYLSEWINKHS 527
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 27/83 (32%)
Query: 123 LEVLDLTYNNL-NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181
LE LD+++N L N P + +LR L L NDF+VLP
Sbjct: 102 LEYLDVSHNRLQNISCCP-----MASLRHLDLSFNDFDVLP------------------- 137
Query: 182 IEIPKELGNLTRLRELHIQANRL 204
+ KE GNLT+L L + A +
Sbjct: 138 --VCKEFGNLTKLTFLGLSAAKF 158
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 231 LVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIG--NLDL----ASHKSVLKMD 283
L L +N + E+ ++ LS LR L + NR+ L + N DL SH + +
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 284 FNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRL 327
P + L L + D++ + KE GNL++L L + A +
Sbjct: 117 CCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPP 209
LYL N F ++P E+ N K+L ++ L N + + + N+T+L L + NRL +PP
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 210 EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK-ELGNLSRLRELHIQANRL 261
KS L++ L L ND+ +P+ +LS L L I AN L
Sbjct: 96 RT----FDGLKS-LRL-----LSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 29/149 (19%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
L L N +PKEL N L + + NR++ L S++S M
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL----------SNQSFSNM-------- 77
Query: 291 IADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 349
L L+L N L I P+ L LR L + N ++V+P G + S S L +
Sbjct: 78 -TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIG 134
Query: 350 FNPWVTPIADQLQVGISHVLDYIRSETYK 378
NP + + D+++SE YK
Sbjct: 135 ANPLYC------DCNMQWLSDWVKSE-YK 156
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 196 ELHIQANRLTVLPPEIGN------LDLA-------SHKSVLKMDFNPWLVLRENDLIEI- 241
EL++ N+ T++P E+ N +DL+ S++S M L+L N L I
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 242 PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 286
P+ L LR L + N ++V+P G + S S L + NP
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANP 137
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 108 NRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEI 165
NR+S+L + F L L L+YN L P F L++LR L L ND V+P
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Query: 166 GNLKNLQILVLRENDL 181
+L L L + N L
Sbjct: 123 NDLSALSHLAIGANPL 138
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 166
N+++ + G F L L L N +++ S PG F L L LYL N + LP ++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKELPEKMP 120
Query: 167 NLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 225
K LQ L + EN++ ++ K + N L ++ + + N P + ++ + + + K+
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-----PLKSSGIENGAFQGMKKL 173
Query: 226 DFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
++ + + ++ IP+ L L ELH+ N++T +D AS K + +
Sbjct: 174 S---YIRIADTNITTIPQGLP--PSLTELHLDGNKIT-------KVDAASLKGLNNL--- 218
Query: 286 PWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 344
+L L N + + L N LRELH+ N+L +P LA HK
Sbjct: 219 ---------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----GLADHKY 264
Query: 345 V 345
+
Sbjct: 265 I 265
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 166
N+++ + G F L L L N +++ S PG F L L LYL N + LP ++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKELPEKMP 120
Query: 167 NLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 225
K LQ L + EN++ ++ K + N L ++ + + N P + ++ + + + K+
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-----PLKSSGIENGAFQGMKKL 173
Query: 226 DFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
++ + + ++ IP+ L L ELH+ N++T +D AS K + +
Sbjct: 174 S---YIRIADTNITTIPQGLP--PSLTELHLDGNKIT-------KVDAASLKGLNNL--- 218
Query: 286 PWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 344
+L L N + + L N LRELH+ N+L +P LA HK
Sbjct: 219 ---------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----GLADHKY 264
Query: 345 V 345
+
Sbjct: 265 I 265
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 106 RMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL-----YLGDNDFEV 160
++ LS + L+ LD++ N+++ G+ ++L +L L D F
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHK 220
LP I ++L L N + IPK++ L L+EL++ +N+L +P G D +
Sbjct: 419 LPPRI------KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD--GIFDRLTSL 470
Query: 221 SVLKMDFNPW 230
+ + NPW
Sbjct: 471 QKIWLHTNPW 480
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 235 ENDLIEIPKELG----------------------NLSRLRELHIQANRLTVLP------- 265
+N LI +PK+L +LS+LR L I NR+ L
Sbjct: 9 KNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68
Query: 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN 325
E+ LDL SH ++K+ +P V L L D + I KE GN+S+L+ L +
Sbjct: 69 QELEYLDL-SHNKLVKISCHPTVN--LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 326 RL---TVLPPEIGNLDLA 340
L +VLP I +L+++
Sbjct: 126 HLEKSSVLP--IAHLNIS 141
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 34/190 (17%)
Query: 126 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGN-LKNLQILVLRENDLI 182
LD + NNL ++ N L L L L N + L AE+ +K+LQ L + +N +
Sbjct: 329 LDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-V 386
Query: 183 EIPKELGNLT---RLRELHIQANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWLVLR 234
++ G+ + L L++ +N LT LPP I LDL S+K
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-------------- 432
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW--VTPIA 292
+ IPK++ L L+EL++ +N+L +P G D + + + NPW P
Sbjct: 433 ---IKSIPKQVVKLEALQELNVASNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPRI 487
Query: 293 DQLQLVLREN 302
D L L +N
Sbjct: 488 DYLSRWLNKN 497
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 45/173 (26%)
Query: 189 GNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNL 248
G+LT L L +Q N+L L +I + KS+ ++D + + + ++ G+
Sbjct: 345 GHLTELETLILQMNQLKELS-KIAEMT-TQMKSLQQLDIS-------QNSVSYDEKKGDC 395
Query: 249 S---RLRELHIQANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLR 300
S L L++ +N LT LPP I LDL S+K
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK----------------------- 432
Query: 301 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
+ IPK++ L L+EL++ +N+L +P G D + + + NPW
Sbjct: 433 ---IKSIPKQVVKLEALQELNVASNQLKSVPD--GIFDRLTSLQKIWLHTNPW 480
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 18/186 (9%)
Query: 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQI 173
+G P + L L N L++ S L L L L N + LP + + L NL+
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 174 LVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
LVL EN L +P LT L L++ N+L LP G D ++ + L +D
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK--GVFDKLTNLTRLDLD------ 165
Query: 233 LRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPI 291
N L +P+ L++L++L + N+L +P G D + + + + NPW
Sbjct: 166 --NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD--GVFDRLTSLTHIWLLNNPWDCAC 221
Query: 292 ADQLQL 297
+D L L
Sbjct: 222 SDILYL 227
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 165
N+L +L G F L L L N L SLP G F L L LYLG N + LP+ +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126
Query: 166 GN-LKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQANRLTVLP 208
+ L L+ L L N L IP LT L+ L + N+L +P
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 165
N+L +L G F L L L N L SLP G F L L LYLG N + LP+ +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126
Query: 166 GN-LKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQANRLTVLP 208
+ L L+ L L N L IP LT L+ L + N+L +P
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 117 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILV 175
F F L+ LDLT +L+E LP L TL+ L L N FE L N +L L
Sbjct: 274 FHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 176 LREND-LIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLA--SHKSVLKMDFNPWL 231
++ N +E+ L NL LREL + + + + NL L SH L + +N L
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 232 VLRENDLIEIPK-ELGNLSRLR 252
L+ E P+ EL +L+ R
Sbjct: 390 SLKTEAFKECPQLELLDLAFTR 411
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQI 173
+G P + L L N L++ S L L L L N + LP + + L NL+
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 174 LVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLV 232
LVL EN L +P LT L L++ N+L LP G D ++ + L + +N
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQS 171
Query: 233 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
L E L++L++L + N+L +P G D + + + NPW
Sbjct: 172 LPEG-------VFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPW 217
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 117/293 (39%), Gaps = 70/293 (23%)
Query: 31 PELELADKGLSSFEELPGLMNMLYITRITLSHNKLK--------------GEIIVQVIKG 76
P LE G + EELP L N+ ++T I +N LK G I++ +
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 232
Query: 77 LSNSKYNYIPILH--------VTSXXXXXXXXXXXXCRMNRLSSLPRGFGAFPVLEVLDL 128
L N +P L + + R N L+ LP + L+V +
Sbjct: 233 LQN-----LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 129 TYNNLNEQSLPGNFFMLE--------------TLRALYLGDNDFEVLPAEIGNLKNLQIL 174
++ L+E LP N + L +L L + +N LPA L+ L
Sbjct: 288 IFSGLSE--LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---L 342
Query: 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR 234
+ N L E+P+ N L++LH++ N L P D+ L+M+
Sbjct: 343 IASFNHLAEVPELPQN---LKQLHVEYNPLREFP------DIPESVEDLRMN-------- 385
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLP--PE-IGNLDLASHKSVLKMDF 284
+ L E+P+ N L++LH++ N L P PE + +L + S + V +F
Sbjct: 386 -SHLAEVPELPQN---LKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEF 434
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L +Y +N + LP +L+ L + R+N L ++P+ +LT L + L+ L
Sbjct: 239 LTTIYADNNLLKTLPDLPPSLEALNV---RDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295
Query: 208 PPEIGNLDLASHKSVLKMDFNPWLV---LRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
PP + L+ +S++ D P L + N LIE+P RL L N L +
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEV 352
Query: 265 PPEIGNLDLASHKSVLKMDFNPW--VTPIADQLQLVLRENDLIEIPKELGNLSRLRELHI 322
P +L + L +++NP I + ++ + + L E+P+ N L++LH+
Sbjct: 353 P------ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN---LKQLHV 403
Query: 323 QANRLTVLP--PE-IGNLDLASHKSVLKMDF 350
+ N L P PE + +L + S + V +F
Sbjct: 404 ETNPLREFPDIPESVEDLRMNSERVVDPYEF 434
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 152/372 (40%), Gaps = 90/372 (24%)
Query: 15 ISKAKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLS------------- 61
+S+ + LD ELEL + GLSS ELP + L + +L+
Sbjct: 62 VSRLRDCLDRQAH----ELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLL 117
Query: 62 --HNKLKG----EIIVQVIKGLSNSKYNYIPILHVTSXXXXXXXXXXXXCRMNRLSSLPR 115
+N LK +++ + G+SN++ +P L +S + +L LP
Sbjct: 118 VDNNNLKALSDLPPLLEYL-GVSNNQLEKLPELQNSSFLKIIDVDNN---SLKKLPDLP- 172
Query: 116 GFGAFPVLEVLDLTYNNLNE----QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK-N 170
P LE + N L E Q+LP L A+Y +N + LP +L +
Sbjct: 173 -----PSLEFIAAGNNQLEELPELQNLPF-------LTAIYADNNSLKKLP----DLPLS 216
Query: 171 LQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
L+ +V N L E+P EL NL L ++ N L LP DL L +
Sbjct: 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNV----- 264
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
R+N L ++P+ +L+ L + L+ LPP + L+ +S++ D P +
Sbjct: 265 ---RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE- 320
Query: 291 IADQLQLVLRENDLIEIPKELGNLSR-----------------LRELHIQANRLTVLP-- 331
+L + N LIE+P L R L++LH++ N L P
Sbjct: 321 -----ELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDI 375
Query: 332 PE-IGNLDLASH 342
PE + +L + SH
Sbjct: 376 PESVEDLRMNSH 387
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 109/268 (40%), Gaps = 36/268 (13%)
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF-EVLPAEIG-NLKNLQ 172
F LEVL LT NL+ L GNFF L +L L L DN+ ++ PA N++
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 173 ILVLR--------ENDLIEIPKELGNLTRLRELHIQ-ANRLTVLPPEIGN---------L 214
+L L E DL+ + L RL + +Q N + + GN L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 215 DLASH---KSVLKMDFNPWLVLRENDLI-----EIPKELGNLSRLRELHIQANRLTVLPP 266
DL+ + +S+ K F+ + LI + G+ + + L
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 267 EIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQAN 325
+ +L + ++LK F + D QL L +N++ +I L+ L+EL + N
Sbjct: 278 KTCDLSKSKIFALLKSVF----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTN 333
Query: 326 RLTVLPPEIGNLDLASHKSVLKMDFNPW 353
+L +P I D + + + NPW
Sbjct: 334 QLKSVPDGI--FDRLTSLQKIWLHTNPW 359
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PA 163
C R ++P G +LDL N + + F L L L +N + P
Sbjct: 18 CHRKRFVAVPEGIPT--ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPG 74
Query: 164 EIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVL------------PPE 210
NL NL+ L LR N L IP L+ L +L I N++ +L E
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134
Query: 211 IGNLDLA--SHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLS-----RLRELHIQANR 260
+G+ DL SH++ ++ L L + +L IP E L +L RLR L+I A R
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L+S+P G P + Y+N + PG F L L L L +N VLPA
Sbjct: 16 CSGKSLASVPTGI---PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 165 IGN-LKNLQILVLRENDLIEIPKELGNLTRLREL-HI 199
+ + L L L L +N L IP+ G LR L HI
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPR--GAFDNLRSLTHI 107
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 172 QILVLRENDLIEI-PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
Q+L L +N + ++ P LT+L L + N+LTVLP G D + + L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP--AGVFDKLTQLTQLS------ 84
Query: 231 LVLRENDLIEIPKELGNLSRLREL-HI 256
L +N L IP+ G LR L HI
Sbjct: 85 --LNDNQLKSIPR--GAFDNLRSLTHI 107
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 119 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRE 178
AF + + T + LP L L L N LPA I
Sbjct: 100 AFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIA------------ 147
Query: 179 NDLIEIPKELGNLTRLRELHIQAN-RLTVLPPEIGNLDLAS-HKSVLKMDFNPWLVLREN 236
+L RLREL I+A LT LP + + D + H+ ++ + L L
Sbjct: 148 -----------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS---LRLEWT 193
Query: 237 DLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL----DLASHKSVLKMDFNPWVTPIA 292
+ +P + NL L+ L I+ + L+ L P I +L +L ++ P A
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 293 DQLQLVLRE-NDLIEIPKELGNLSRLRELHIQAN-RLTVLPPEIGNL 337
+L+L++ ++L+ +P ++ L++L +L ++ L+ LP I L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 140 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHI 199
G L L++L L LPA I NL+NL+ L +R + L + + +L +L EL +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 200 Q-ANRLTVLPPEIGN--------LDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSR 250
+ L PP G L S+ L +D + L + DL + NLSR
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL----RGCVNLSR 292
Query: 251 LRELHIQ--ANRLTVLPPEIGNLDLASHKSVLK 281
L L Q AN + ++PP + L H+ V +
Sbjct: 293 LPSLIAQLPANCIILVPPHL-QAQLDQHRPVAR 324
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 55/216 (25%)
Query: 124 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIE 183
L T + L + + PG AL L P + L +LQ + L E
Sbjct: 66 RALKATADLLEDATQPGRV-------ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXE 118
Query: 184 IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK 243
+P L L + N L LP I +L+
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLN---------------------------- 150
Query: 244 ELGNLSRLRELHIQAN-RLTVLPPEIGNLDLAS-HKSVLKMDFNPWVTPIADQLQLVLRE 301
RLREL I+A LT LP + + D + H+ ++ + L L
Sbjct: 151 ------RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ------------SLRLEW 192
Query: 302 NDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+ +P + NL L+ L I+ + L+ L P I +L
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF-EVLPAEIG-NLKNLQ 172
F LEVL LT NL+ L GNFF L +L L L DN+ ++ PA N++
Sbjct: 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157
Query: 173 ILVLRENDLIEIPKE 187
+L L N + I +E
Sbjct: 158 VLDLTFNKVKSICEE 172
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIL 174
R F LEVLDL+YN+ +RA LGD F LP NL+ L
Sbjct: 341 RMFENLDKLEVLDLSYNH---------------IRA--LGDQSFLGLP-------NLKEL 376
Query: 175 VLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEI 211
L N L +P + + LT L+++ + N P I
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 101/246 (41%), Gaps = 57/246 (23%)
Query: 142 FFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHI 199
F T++ LY+G N LP + N+ L +LVL NDL +P+ + N +L L +
Sbjct: 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148
Query: 200 QANRLTVLPPE-------IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLR 252
N L + + + NL L+S++ L DL IP L
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNR------------LTHVDLSLIPS-------LF 189
Query: 253 ELHIQANRLTVL--PPEIGNLDLASHKS-------------VLKMDFN-----PWVTPIA 292
++ N L+ L P + LD ASH S +LK+ N W+
Sbjct: 190 HANVSYNLLSTLAIPIAVEELD-ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 248
Query: 293 DQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLP------PEIGNLDLASHKSV 345
+++ L N+L +I + RL L+I NRL L P + LDL SH +
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL-SHNHL 307
Query: 346 LKMDFN 351
L ++ N
Sbjct: 308 LHVERN 313
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L+S+P G +VL L Y+N + PG F L L L L +N VLPA
Sbjct: 16 CSGKSLASVPTGIPT--TTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 165 IGN-LKNLQILVLRENDLIEIPKELGNLTRLREL-HI 199
+ + L L L L +N L IP+ G L+ L HI
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTHI 107
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 172 QILVLRENDLIEI-PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
Q+L L +N + ++ P LT+L L + N+LTVLP G D + + L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP--AGVFDKLTQLTQLS------ 84
Query: 231 LVLRENDLIEIPKELGNLSRLREL-HI 256
L +N L IP+ G L+ L HI
Sbjct: 85 --LNDNQLKSIPR--GAFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L+S+P G P + Y+N + PG F L L L L +N VLPA
Sbjct: 24 CSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 80
Query: 165 IGN-LKNLQILVLRENDLIEIPKELGNLTRLREL-HI 199
+ + L L L L +N L IP+ G L+ L HI
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTHI 115
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 172 QILVLRENDLIEI-PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
Q+L L +N + ++ P LT+L L + N+LTVLP G D + + L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP--AGVFDKLTQLTQLS------ 92
Query: 231 LVLRENDLIEIPKELGNLSRLREL-HI 256
L +N L IP+ G L+ L HI
Sbjct: 93 --LNDNQLKSIPR--GAFDNLKSLTHI 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 147 TLRALYLGDN------DFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHI 199
+L L+LG+N + E+ L +LQ+L L N L +P +LT LR L +
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 200 QANRLTVL 207
+NRLTVL
Sbjct: 512 NSNRLTVL 519
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 125/269 (46%), Gaps = 32/269 (11%)
Query: 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQI 173
R F L+VL+L YN +N+ + F+ L+ L+ L L N E+ + L +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 174 LVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLP--PEIGNLDLASHKSVL--KMDFN 228
+ L++N + I + L +L+ L ++ N LT + P I ++ L+ +K V K++
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 229 PWLV-LRENDL--IEIPKELGNLSRLRELHIQANRLTVL-----PPEIGNLD-LASHKSV 279
L+ L EN L ++I L + L+ L + NR + P E +L+ L +++
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 280 LKMDFNPWVTPIA-------DQLQ-LVLRENDLIEIP-KELGNLSRLRELHIQANRLTVL 330
L++ W T + LQ L L N L +P +L+ LR L + +NRLTVL
Sbjct: 463 LQL---AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 331 PPEIGNLDLASHKSVLKMDFNPWVTPIAD 359
DL ++ +L + N + P D
Sbjct: 520 SHN----DLPANLEILDISRNQLLAPNPD 544
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 41/238 (17%)
Query: 142 FFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQ 200
F T++ LY+G N LP + N+ L +LVL NDL +P+ + + T
Sbjct: 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP------- 147
Query: 201 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANR 260
+LT L NL+ + L L N L + +L + L ++ N
Sbjct: 148 --KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 203
Query: 261 LTVL--PPEIGNLDLASHKS-------------VLKMDFN-----PWVTPIADQLQLVLR 300
L+ L P + LD ASH S +LK+ N W+ +++ L
Sbjct: 204 LSTLAIPIAVEELD-ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 301 ENDLIEIPKE-LGNLSRLRELHIQANRLTVLP------PEIGNLDLASHKSVLKMDFN 351
N+L +I + RL L+I NRL L P + LDL SH +L ++ N
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL-SHNHLLHVERN 319
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL--PAEIGNLKNLQ 172
F + LE LDL+YN L+ +L ++F L +L L L N ++ L + +L LQ
Sbjct: 95 SFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 173 ILVLRENDLIEI--PKELGNLTRLRELHIQANRLTVLPPE 210
IL + D K+ LT L EL I A+ L P+
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL--PAEIGNLKNLQ 172
F + LE LDL+YN L+ +L ++F L +L L L N ++ L + +L LQ
Sbjct: 69 SFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 126
Query: 173 ILVLRENDLIEI--PKELGNLTRLRELHIQANRLTVLPPE 210
IL + D K+ LT L EL I A+ L P+
Sbjct: 127 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 166
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 139 PGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQILVLRENDLIEIPKEL 188
PG F + LR + L +N E+ P L++L LVL N + E+PK L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 139 PGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQILVLRENDLIEIPKEL 188
PG F + LR + L +N E+ P L++L LVL N + E+PK L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 38/152 (25%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +L ++P+ ++ L LDL++NNL+ L L +L L N + +E
Sbjct: 25 CSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 165 -------------------------IGNLKNLQILVLRENDLIEIPK-ELGNLTRLRELH 198
+L+ L++L+L N ++ + + ++ +L++L+
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 199 IQANRLTVLPPEI---GN-------LDLASHK 220
+ N+++ P E+ GN LDL+S+K
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQILVL 176
GA+P L+ L L+ N+L G + L+ L +L + N F +P + ++ L L
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 443
Query: 177 RENDL----IEIPKELGNLT--------------RLRELHIQANRLTVLP 208
+ IP+ L L RL+EL+I N+L LP
Sbjct: 444 SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP 493
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP-----EIGNLDLASH 219
+ NL L L + N + +I L NLT LREL++ + ++ + P + +L+L ++
Sbjct: 84 LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGAN 142
Query: 220 KSVLKMDFNP--------WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 271
++ D +P +L + E+ + ++ + NL+ L L + N++ + P
Sbjct: 143 HNL--SDLSPLSNXTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP----- 194
Query: 272 DLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
LAS S+ F +V I D + N +RL L I N++T L
Sbjct: 195 -LASLTSLHY--FTAYVNQITD--------------ITPVANXTRLNSLKIGNNKITDLS 237
Query: 332 P 332
P
Sbjct: 238 P 238
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQILVL 176
GA+P L+ L L+ N+L G + L+ L +L + N F +P + ++ L L
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417
Query: 177 RENDL----IEIPKELGNLT--------------RLRELHIQANRLTVLP 208
+ IP+ L L RL+EL+I N+L LP
Sbjct: 418 SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP 467
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLR 177
L LDL+YNNL++ G+F L +LR L L N+ + L P L NL+ L L+
Sbjct: 250 LTQLDLSYNNLHDVG-NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 17 KAKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHN---KLKGEIIVQ 72
KA+K D + +IK ++L ++G++ E+ G+ N+ + + L+H+ LK + +Q
Sbjct: 248 KAEK--DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 17 KAKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHN---KLKGEIIVQ 72
KA+K D + +IK ++L ++G++ E+ G+ N+ + + L+H+ LK + +Q
Sbjct: 245 KAEK--DYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,605,113
Number of Sequences: 62578
Number of extensions: 424403
Number of successful extensions: 1213
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 196
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)