Query psy9862
Match_columns 378
No_of_seqs 166 out of 2483
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-31 5.8E-36 271.1 16.4 249 96-360 393-723 (768)
2 4eco_A Uncharacterized protein 100.0 6.2E-31 2.1E-35 261.3 18.7 310 28-354 206-600 (636)
3 3v47_A TOLL-like receptor 5B a 100.0 1.8E-30 6E-35 248.3 20.1 331 27-375 29-424 (455)
4 3rgz_A Protein brassinosteroid 100.0 1.5E-30 5.2E-35 264.0 20.6 310 29-363 295-702 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 4.4E-30 1.5E-34 260.5 23.0 167 28-206 448-658 (876)
6 4ecn_A Leucine-rich repeat pro 100.0 3.2E-30 1.1E-34 261.5 17.4 289 28-332 323-714 (876)
7 4eco_A Uncharacterized protein 100.0 4.4E-30 1.5E-34 255.2 16.1 328 28-362 81-563 (636)
8 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-29 4.8E-34 246.2 18.2 315 28-375 21-497 (520)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-29 1.4E-33 247.3 21.1 139 226-375 424-573 (606)
10 2id5_A Lingo-1, leucine rich r 100.0 3.9E-29 1.3E-33 240.5 19.5 298 25-360 29-339 (477)
11 4fmz_A Internalin; leucine ric 100.0 3.5E-28 1.2E-32 224.1 24.3 290 27-354 43-346 (347)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-28 3.7E-33 242.1 21.5 306 28-360 52-516 (562)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-28 5.3E-33 240.3 22.4 133 229-375 390-526 (549)
14 3t6q_A CD180 antigen; protein- 100.0 2.5E-28 8.4E-33 241.7 23.7 268 96-374 277-574 (606)
15 3o6n_A APL1; leucine-rich repe 100.0 4.4E-28 1.5E-32 227.1 20.6 300 27-362 44-360 (390)
16 3t6q_A CD180 antigen; protein- 100.0 3.4E-28 1.2E-32 240.8 19.7 310 24-360 29-419 (606)
17 2z63_A TOLL-like receptor 4, v 100.0 7.1E-28 2.4E-32 236.7 21.4 322 27-361 27-538 (570)
18 1jl5_A Outer protein YOPM; leu 100.0 4E-27 1.4E-31 224.4 23.1 307 28-362 71-419 (454)
19 3oja_B Anopheles plasmodium-re 100.0 1.4E-27 4.8E-32 235.7 20.6 300 27-361 50-365 (597)
20 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-26 3.7E-31 233.0 26.2 321 29-358 249-626 (680)
21 1o6v_A Internalin A; bacterial 100.0 5.1E-27 1.8E-31 225.0 21.6 302 28-355 46-389 (466)
22 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-26 1.6E-30 217.3 25.8 200 28-265 42-249 (457)
23 1o6v_A Internalin A; bacterial 99.9 2.6E-26 9E-31 220.0 23.4 284 50-358 43-370 (466)
24 4fmz_A Internalin; leucine ric 99.9 4.7E-26 1.6E-30 209.9 22.1 278 46-358 37-328 (347)
25 1jl5_A Outer protein YOPM; leu 99.9 7.7E-27 2.6E-31 222.5 16.9 296 29-362 12-380 (454)
26 3o6n_A APL1; leucine-rich repe 99.9 5.4E-26 1.8E-30 212.9 21.9 275 50-357 42-334 (390)
27 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-27 1.7E-31 228.1 15.1 295 31-359 3-417 (520)
28 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-27 6.4E-32 216.1 11.2 248 53-356 50-307 (313)
29 3v47_A TOLL-like receptor 5B a 99.9 1.8E-26 6.2E-31 220.5 18.3 297 32-361 14-391 (455)
30 2z80_A TOLL-like receptor 2, v 99.9 9.7E-27 3.3E-31 215.0 15.7 288 32-376 35-331 (353)
31 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-25 6.6E-30 219.4 25.3 265 27-363 39-306 (622)
32 1xku_A Decorin; proteoglycan, 99.9 2.1E-25 7.2E-30 204.1 23.7 266 29-355 32-307 (330)
33 3j0a_A TOLL-like receptor 5; m 99.9 5.1E-26 1.7E-30 233.1 21.6 250 98-358 267-543 (844)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-25 3.6E-30 206.3 21.4 234 102-354 58-307 (332)
35 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-25 4.1E-30 223.3 23.5 335 23-376 47-596 (635)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-25 8.1E-30 212.3 23.8 295 28-363 64-396 (457)
37 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-26 1.5E-30 225.5 19.1 327 26-362 30-445 (606)
38 1xku_A Decorin; proteoglycan, 99.9 1.2E-25 4.1E-30 205.8 20.3 266 27-352 51-330 (330)
39 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-26 6.1E-31 225.7 14.3 309 28-359 26-468 (549)
40 2id5_A Lingo-1, leucine rich r 99.9 1.5E-25 5.1E-30 215.5 20.4 288 32-361 15-316 (477)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-25 4.5E-30 220.2 20.4 310 30-360 33-491 (562)
42 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-25 1.1E-29 222.4 22.6 310 27-362 24-402 (680)
43 3oja_B Anopheles plasmodium-re 99.9 2.9E-25 1E-29 219.1 21.5 274 51-357 49-340 (597)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-25 9.5E-30 203.5 19.2 277 29-352 34-331 (332)
45 3j0a_A TOLL-like receptor 5; m 99.9 7.4E-25 2.5E-29 224.5 22.7 296 26-331 22-378 (844)
46 2z66_A Variable lymphocyte rec 99.9 8.1E-25 2.8E-29 198.1 17.4 238 98-375 29-276 (306)
47 3zyj_A Leucine-rich repeat-con 99.9 4.2E-24 1.4E-28 203.2 21.3 248 102-375 47-307 (440)
48 4fcg_A Uncharacterized protein 99.9 7.3E-25 2.5E-29 200.2 15.2 220 98-354 82-314 (328)
49 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 197.9 17.2 230 24-331 77-317 (328)
50 3zyi_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 203.0 21.2 247 102-374 58-317 (452)
51 2z63_A TOLL-like receptor 4, v 99.9 1.8E-24 6E-29 212.4 18.1 316 31-362 10-442 (570)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-25 9.3E-30 201.8 11.2 226 98-360 51-287 (313)
53 1ozn_A Reticulon 4 receptor; N 99.9 5.5E-24 1.9E-28 190.6 19.2 232 102-375 15-253 (285)
54 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-26 3.8E-31 222.3 -1.4 324 28-362 28-419 (461)
55 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.9E-28 188.9 17.7 214 96-375 9-223 (290)
56 2z66_A Variable lymphocyte rec 99.9 1.3E-24 4.5E-29 196.7 10.8 230 102-363 56-296 (306)
57 1wwl_A Monocyte differentiatio 99.9 4.2E-25 1.4E-29 200.5 7.1 245 51-356 41-311 (312)
58 3o53_A Protein LRIM1, AGAP0063 99.9 6.7E-24 2.3E-28 193.0 13.0 218 102-363 38-259 (317)
59 2z62_A TOLL-like receptor 4, v 99.9 4.3E-23 1.5E-27 183.9 17.8 236 102-374 11-252 (276)
60 3g06_A SSPH2 (leucine-rich rep 99.9 8.7E-23 3E-27 200.6 20.9 241 28-335 61-305 (622)
61 2o6q_A Variable lymphocyte rec 99.9 4.9E-22 1.7E-26 176.5 21.2 213 99-374 18-233 (270)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5E-25 1.7E-29 200.5 1.2 204 102-349 62-270 (317)
63 1ozn_A Reticulon 4 receptor; N 99.9 1E-22 3.6E-27 182.3 16.3 230 98-363 33-270 (285)
64 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-22 8.3E-27 199.4 20.1 86 275-362 469-563 (635)
65 1z7x_W Ribonuclease inhibitor; 99.9 6E-25 2.1E-29 210.2 -1.5 315 28-358 56-444 (461)
66 3zyi_A Leucine-rich repeat-con 99.9 4.9E-22 1.7E-26 189.6 18.6 241 31-328 57-303 (452)
67 3zyj_A Leucine-rich repeat-con 99.9 4.6E-22 1.6E-26 189.1 18.3 198 98-328 89-292 (440)
68 3oja_A Leucine-rich immune mol 99.9 7.2E-23 2.5E-27 196.8 12.6 225 96-365 33-261 (487)
69 2z80_A TOLL-like receptor 2, v 99.9 2.1E-23 7.2E-28 192.6 7.3 253 27-332 51-318 (353)
70 1wwl_A Monocyte differentiatio 99.9 5.2E-23 1.8E-27 186.7 8.3 250 28-329 43-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 6.1E-23 2.1E-27 197.4 8.3 231 29-349 35-270 (487)
72 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.5E-26 177.3 14.4 233 51-356 62-309 (310)
73 1h6u_A Internalin H; cell adhe 99.9 2.8E-21 9.6E-26 174.9 12.4 197 96-334 40-236 (308)
74 2z62_A TOLL-like receptor 4, v 99.9 1.9E-20 6.5E-25 166.7 17.6 214 53-297 28-246 (276)
75 1p9a_G Platelet glycoprotein I 99.9 9.1E-21 3.1E-25 169.9 15.4 203 48-291 5-211 (290)
76 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.9E-25 170.8 15.9 195 117-355 37-231 (308)
77 3rfs_A Internalin B, repeat mo 99.8 1.2E-20 4.1E-25 167.6 14.7 221 32-315 23-246 (272)
78 3rfs_A Internalin B, repeat mo 99.8 4E-21 1.4E-25 170.7 11.2 217 102-362 23-243 (272)
79 2ca6_A RAN GTPase-activating p 99.8 3.2E-22 1.1E-26 187.0 4.2 241 48-358 27-320 (386)
80 3m19_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 158.6 21.1 132 98-266 15-148 (251)
81 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4E-25 164.5 12.6 208 107-352 20-237 (239)
82 2o6q_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 157.1 19.6 157 98-291 62-221 (270)
83 3ogk_B Coronatine-insensitive 99.8 6.6E-21 2.3E-25 187.9 7.3 263 96-363 219-535 (592)
84 3goz_A Leucine-rich repeat-con 99.8 3.4E-21 1.2E-25 178.4 4.5 154 33-205 3-180 (362)
85 3cvr_A Invasion plasmid antige 99.8 3.4E-19 1.2E-23 173.1 17.5 193 98-337 60-253 (571)
86 4glp_A Monocyte differentiatio 99.8 2E-19 6.8E-24 162.9 13.6 228 26-289 62-308 (310)
87 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7.3E-24 174.6 13.5 186 122-363 60-252 (571)
88 2xwt_C Thyrotropin receptor; s 99.8 1.3E-19 4.6E-24 157.7 10.9 193 98-325 32-236 (239)
89 2ast_B S-phase kinase-associat 99.8 3.1E-20 1E-24 170.1 4.7 225 102-362 74-314 (336)
90 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8E-23 154.3 11.9 174 118-331 43-216 (291)
91 1h6t_A Internalin B; cell adhe 99.7 6.5E-18 2.2E-22 151.4 12.3 189 32-265 28-216 (291)
92 3goz_A Leucine-rich repeat-con 99.7 3.7E-19 1.3E-23 164.7 4.3 162 28-206 22-210 (362)
93 3e6j_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 140.5 17.3 166 148-374 21-187 (229)
94 3ogk_B Coronatine-insensitive 99.7 1.8E-19 6.3E-24 177.5 1.9 301 51-361 110-508 (592)
95 3m19_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 143.1 16.5 175 30-263 16-193 (251)
96 2o6s_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 137.3 16.0 176 102-315 11-189 (208)
97 2v9t_B SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 139.6 15.0 59 309-375 122-180 (220)
98 4ay9_X Follicle-stimulating ho 99.7 3.4E-17 1.1E-21 150.8 14.3 213 102-349 34-254 (350)
99 2p1m_B Transport inhibitor res 99.7 7.6E-19 2.6E-23 173.2 2.9 189 167-360 287-525 (594)
100 2ca6_A RAN GTPase-activating p 99.7 2.3E-19 7.7E-24 167.6 -1.2 232 112-361 23-298 (386)
101 2ast_B S-phase kinase-associat 99.7 3.4E-18 1.2E-22 156.4 6.0 218 29-285 48-282 (336)
102 1m9s_A Internalin B; cell inva 99.7 2.5E-17 8.5E-22 161.6 12.3 172 96-331 42-213 (605)
103 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.9E-22 145.6 9.9 103 97-207 19-121 (263)
104 2xot_A Amphoterin-induced prot 99.7 1.6E-16 5.6E-21 146.8 14.5 178 102-357 22-205 (361)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-16 6.8E-21 135.8 13.8 163 124-374 14-180 (220)
106 2o6s_A Variable lymphocyte rec 99.7 2E-16 6.7E-21 134.6 13.1 174 124-362 10-186 (208)
107 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 157.3 12.7 145 102-265 69-213 (605)
108 1xeu_A Internalin C; cellular 99.7 2E-17 6.9E-22 146.0 6.7 174 119-333 17-190 (263)
109 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.8E-21 147.3 10.8 154 102-267 58-220 (350)
110 4ezg_A Putative uncharacterize 99.7 3.8E-16 1.3E-20 131.6 10.8 149 96-262 43-194 (197)
111 4ezg_A Putative uncharacterize 99.7 5.3E-16 1.8E-20 130.7 11.4 147 29-204 45-193 (197)
112 1dce_A Protein (RAB geranylger 99.7 4.4E-18 1.5E-22 166.0 -2.2 165 29-207 350-523 (567)
113 2p1m_B Transport inhibitor res 99.7 1.6E-17 5.6E-22 163.6 1.8 323 28-362 66-502 (594)
114 3e6j_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 128.8 15.4 152 102-292 23-176 (229)
115 4b8c_D Glucose-repressible alc 99.6 2.8E-16 9.4E-21 157.8 9.2 141 52-211 172-312 (727)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 3.5E-15 1.2E-19 127.9 13.7 105 102-208 15-121 (220)
117 2v9t_B SLIT homolog 2 protein 99.6 5.9E-15 2E-19 126.5 13.6 150 102-289 15-166 (220)
118 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.5E-19 121.1 15.2 141 149-374 13-153 (193)
119 2ell_A Acidic leucine-rich nuc 99.6 5.2E-15 1.8E-19 121.2 11.9 135 121-267 24-165 (168)
120 1dce_A Protein (RAB geranylger 99.6 2.7E-17 9.3E-22 160.4 -2.6 180 49-265 345-549 (567)
121 2xot_A Amphoterin-induced prot 99.6 8.8E-15 3E-19 135.1 11.5 154 31-209 21-180 (361)
122 2ell_A Acidic leucine-rich nuc 99.6 7.7E-15 2.6E-19 120.2 9.7 93 116-209 66-164 (168)
123 1w8a_A SLIT protein; signaling 99.6 4.7E-14 1.6E-18 118.2 14.7 45 311-358 98-143 (192)
124 4b8c_D Glucose-repressible alc 99.5 1.8E-15 6.2E-20 151.9 3.8 134 121-267 173-311 (727)
125 2o6r_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 111.0 16.3 142 149-374 10-152 (177)
126 2je0_A Acidic leucine-rich nuc 99.5 5E-14 1.7E-18 112.9 8.8 108 97-208 17-129 (149)
127 1w8a_A SLIT protein; signaling 99.5 4.2E-13 1.4E-17 112.3 12.5 126 102-262 12-139 (192)
128 2je0_A Acidic leucine-rich nuc 99.5 1.6E-13 5.4E-18 110.0 8.9 127 120-258 16-149 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.4E-18 112.8 8.6 131 117-262 15-153 (176)
130 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.4E-18 113.8 7.4 135 47-205 13-153 (176)
131 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.7E-17 108.3 13.2 104 102-209 14-119 (193)
132 3sb4_A Hypothetical leucine ri 99.4 7.8E-13 2.7E-17 120.5 9.9 273 22-348 19-328 (329)
133 2o6r_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 103.7 13.8 125 102-262 11-137 (177)
134 3sb4_A Hypothetical leucine ri 99.4 5E-13 1.7E-17 121.7 7.0 244 27-322 48-328 (329)
135 3g39_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 101.7 11.2 117 231-375 14-131 (170)
136 3un9_A NLR family member X1; l 99.3 1.1E-13 3.6E-18 128.1 -1.7 169 121-356 101-285 (372)
137 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.3E-16 101.0 11.4 107 102-211 16-124 (174)
138 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 100.8 11.2 117 231-375 17-134 (174)
139 3g39_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 98.7 11.5 104 102-208 13-118 (170)
140 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.6E-18 116.0 -3.3 138 160-355 39-186 (198)
141 1ds9_A Outer arm dynein; leuci 99.3 4.3E-14 1.5E-18 119.1 -6.6 90 115-208 42-131 (198)
142 3un9_A NLR family member X1; l 99.2 1E-12 3.5E-17 121.4 -0.4 158 28-205 72-252 (372)
143 4fdw_A Leucine rich hypothetic 99.1 2.2E-09 7.6E-14 100.0 16.0 229 98-351 136-380 (401)
144 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 101.3 9.9 116 231-375 13-131 (347)
145 4fdw_A Leucine rich hypothetic 99.0 1.3E-08 4.4E-13 94.9 16.5 36 293-328 346-383 (401)
146 2ifg_A High affinity nerve gro 99.0 2.6E-09 9E-14 97.7 10.5 102 102-205 12-116 (347)
147 1io0_A Tropomodulin; LRR prote 98.6 3.8E-09 1.3E-13 87.5 -0.3 116 50-205 33-164 (185)
148 2ra8_A Uncharacterized protein 98.5 3.2E-08 1.1E-12 90.7 3.7 83 121-205 107-206 (362)
149 4gt6_A Cell surface protein; l 98.5 1.6E-05 5.4E-10 73.8 22.1 149 30-202 66-215 (394)
150 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.4E-13 84.3 0.4 90 28-134 36-136 (185)
151 2ra8_A Uncharacterized protein 98.5 1.5E-07 5.2E-12 86.2 6.3 84 118-205 169-265 (362)
152 4fs7_A Uncharacterized protein 98.4 1E-05 3.5E-10 75.1 17.1 56 291-350 319-375 (394)
153 4fs7_A Uncharacterized protein 98.2 9.6E-05 3.3E-09 68.5 17.8 101 244-351 248-353 (394)
154 3rw6_A Nuclear RNA export fact 98.1 1E-06 3.5E-11 76.7 2.0 112 85-198 129-257 (267)
155 3rfe_A Platelet glycoprotein I 97.9 1.6E-05 5.6E-10 61.2 5.5 70 296-375 12-83 (130)
156 3rw6_A Nuclear RNA export fact 97.9 8.3E-06 2.8E-10 71.0 4.1 67 290-358 168-237 (267)
157 4gt6_A Cell surface protein; l 97.9 0.001 3.5E-08 61.5 18.3 33 29-62 88-123 (394)
158 1pgv_A TMD-1, tropomodulin TMD 97.7 6.1E-06 2.1E-10 68.1 0.4 114 51-204 39-169 (197)
159 3e4g_A ATP synthase subunit S, 97.7 2E-05 7E-10 63.7 3.0 91 112-203 52-150 (176)
160 4h09_A Hypothetical leucine ri 97.6 0.0059 2E-07 55.9 19.2 57 290-349 284-341 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.9E-05 6.6E-10 65.1 1.6 87 28-131 41-136 (197)
162 3e4g_A ATP synthase subunit S, 97.6 1.9E-05 6.6E-10 63.8 1.5 35 122-157 115-150 (176)
163 4h09_A Hypothetical leucine ri 96.8 0.084 2.9E-06 48.1 18.0 58 291-351 262-320 (379)
164 3rfe_A Platelet glycoprotein I 96.2 0.0085 2.9E-07 45.8 6.1 53 102-157 12-66 (130)
165 2lz0_A Uncharacterized protein 40.3 43 0.0015 23.5 4.6 38 117-156 16-53 (100)
166 2lz0_A Uncharacterized protein 27.1 96 0.0033 21.6 4.6 39 139-178 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.7e-31 Score=271.06 Aligned_cols=249 Identities=30% Similarity=0.426 Sum_probs=188.3
Q ss_pred CccchhccccCCcccc-cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCc-cCCccccCCCCCcE
Q psy9862 96 LPFLFLQFPCRMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 173 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~ 173 (378)
+++++ ++++++|.++ .+|..|..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 393 ~~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQ-ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCC-EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCcc-EEECCCCccccccCHHHhcCCCCCEEECcCCcccC-cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 34566 6667777666 556667777777777777777765 45666777777777777777776 56777777777888
Q ss_pred EecCCCCCc-cCChhhcCCCCCcEEeccCCcCc-ccCcccccccccccccccccCCCCceeccCCccc-cccccccCCcC
Q psy9862 174 LVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSR 250 (378)
Q Consensus 174 L~l~~n~~~-~l~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~-~l~~~l~~~~~ 250 (378)
|++++|.++ .+|..+..+++|+.|++++|.++ .+|.+++.++.++ .+++++|.+. .+|..+..+++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-----------~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-----------ILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-----------EEECCSSCCEEECCGGGGGCTT
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-----------EEECCCCcccCcCCHHHcCCCC
Confidence 888877777 45777777777888888887777 5666666555444 3889999987 78888999999
Q ss_pred cceeecccccCC-cCCCCCCC-----------------------------------------------------------
Q psy9862 251 LRELHIQANRLT-VLPPEIGN----------------------------------------------------------- 270 (378)
Q Consensus 251 L~~L~l~~n~l~-~~~~~~~~----------------------------------------------------------- 270 (378)
|+.|++++|.+. .+|..+..
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 999999999886 66644322
Q ss_pred --------cccccccccccccCCCCccCc-------cchhhhhccCcccc-ccchhhcCCCCCCEEEeecCCCC-cCChh
Q psy9862 271 --------LDLASHKSVLKMDFNPWVTPI-------ADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLPPE 333 (378)
Q Consensus 271 --------l~~~~~l~~l~l~~~~~~~~~-------~~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~-~~~~~ 333 (378)
+..++.++.+++++|.+.+.. +.++.|++++|.++ .+|..++.+++|++||+++|+++ .+|..
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 223456778888888876543 45778899999997 88888999999999999999998 77777
Q ss_pred hccCCCccCcceeeccCCCCCccchHH
Q psy9862 334 IGNLDLASHKSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 334 ~~~l~~~~~l~~l~l~~n~~~~~~~~~ 360 (378)
++.++ .|+++++++|+++|.+|+.
T Consensus 700 l~~l~---~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 700 MSALT---MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGCC---CCSEEECCSSEEEEECCSS
T ss_pred HhCCC---CCCEEECcCCcccccCCCc
Confidence 76665 8999999999999998875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.2e-31 Score=261.32 Aligned_cols=310 Identities=19% Similarity=0.208 Sum_probs=202.0
Q ss_pred ccCCceeeccCCccc------------------CcCccccc--ccccccEEEcccccccCchhHHHHhhccccccCCccc
Q psy9862 28 IKNPELELADKGLSS------------------FEELPGLM--NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPI 87 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~------------------~~~~~~l~--~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~ 87 (378)
.++++|++++|.+++ ++ +.+. ++++|++|++++|.+.+ .+|+.+.+++ . |+.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~-~-L~~ 277 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALP-E-MQL 277 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCS-S-CCE
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCc----cChHHHhcCC-C-CCE
Confidence 468999999999987 43 4566 89999999999999888 6777777777 5 777
Q ss_pred cCCCCCC--------C----C------ccchhccccCCcccccCCC--CCCCCCcccEEEccCCCCCCCCCCcccccCcc
Q psy9862 88 LHVTSLP--------I----L------PFLFLQFPCRMNRLSSLPR--GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLET 147 (378)
Q Consensus 88 l~l~~~~--------~----~------~~l~~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~ 147 (378)
++++.-. . + ++++ ++++++|.++.+|. .|..+++|++|++++|.+.+ .+| .+..+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCC
Confidence 7665443 1 2 7888 99999999999998 79999999999999999985 456 7888999
Q ss_pred ccEEecCCCCCccCCccccCCCC-CcEEecCCCCCccCChhhcCCC--CCcEEeccCCcCc-ccCcccc-------cccc
Q psy9862 148 LRALYLGDNDFEVLPAEIGNLKN-LQILVLRENDLIEIPKELGNLT--RLRELHIQANRLT-VLPPEIG-------NLDL 216 (378)
Q Consensus 148 L~~L~l~~n~l~~l~~~l~~l~~-L~~L~l~~n~~~~l~~~l~~l~--~L~~L~l~~~~l~-~~~~~~~-------~l~~ 216 (378)
|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+.... +|+.|++++|.++ ..|..+. .+..
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 99999999999988888888998 9999999999998888776654 8999999999887 3454454 3333
Q ss_pred ccccccc-------------ccCCCCceeccCCccccccccccC--------CcCcceeecccccCCcCCCCCCCccccc
Q psy9862 217 ASHKSVL-------------KMDFNPWLVLRENDLIEIPKELGN--------LSRLRELHIQANRLTVLPPEIGNLDLAS 275 (378)
Q Consensus 217 l~~l~~~-------------~~~~~~~l~l~~~~l~~l~~~l~~--------~~~L~~L~l~~n~l~~~~~~~~~l~~~~ 275 (378)
++.+... .+..++.+++++|.++.+|..... +++|++|++++|.++.+|..+.. ..++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-~~l~ 513 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLP 513 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST-TTCT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh-ccCC
Confidence 3321110 123333444444444444432211 11455555555554444433220 1224
Q ss_pred ccccccccCCCCcc------CccchhhhhccC------cccc-ccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccC
Q psy9862 276 HKSVLKMDFNPWVT------PIADQLQLVLRE------NDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 342 (378)
Q Consensus 276 ~l~~l~l~~~~~~~------~~~~l~~L~l~~------n~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~ 342 (378)
+|+.+++++|.+.+ ..++++.|++++ |.+. .+|.++..+++|++|++++|+++.+|..+. ++
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-----~~ 588 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-----PN 588 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-----TT
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-----Cc
Confidence 44555555554432 222344455532 2222 445555555555555555555555554332 25
Q ss_pred cceeeccCCCCC
Q psy9862 343 KSVLKMDFNPWV 354 (378)
Q Consensus 343 l~~l~l~~n~~~ 354 (378)
|++|++++|++.
T Consensus 589 L~~L~Ls~N~l~ 600 (636)
T 4eco_A 589 ISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCTTC
T ss_pred CCEEECcCCCCc
Confidence 555555555544
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.8e-30 Score=248.29 Aligned_cols=331 Identities=15% Similarity=0.198 Sum_probs=206.7
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC----------CCCCC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT----------SLPIL 96 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~----------~~~~~ 96 (378)
+.+++.|++++|.++.+. ...+.++++|++|++++|.+.+.+.. ..+.+++ . |+.++++ .+..+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~---~~~~~l~-~-L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLS-S-LIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTCEECT---TTTTTCT-T-CCEEECTTCTTCEECTTTTTTC
T ss_pred CCccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccceECc---ccccccc-c-CCEEeCCCCccCccChhhccCc
Confidence 356999999999998753 24677999999999999988652222 2233333 2 2222221 11224
Q ss_pred ccchhccccCCccccc-CCCC--CCCCCcccEEEccCCCCCCCCCCcc-cccCccccEEecCCCCCccC-CccccCC--C
Q psy9862 97 PFLFLQFPCRMNRLSS-LPRG--FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVL-PAEIGNL--K 169 (378)
Q Consensus 97 ~~l~~~l~l~~~~l~~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~-l~~l~~L~~L~l~~n~l~~l-~~~l~~l--~ 169 (378)
++++ ++++++|.++. ++.. |..+++|++|++++|.+... .+.. +.++++|++|++++|.++.+ +..+..+ .
T Consensus 103 ~~L~-~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 103 ANLE-VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TTCC-EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC-CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred ccCC-EEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc-CcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 4455 55555555542 1111 44455555555555555431 1222 44455555555555554422 2223222 3
Q ss_pred CCcEEecCCCCCccCChh---------hcCCCCCcEEeccCCcCc-ccCcccccc---ccccccccc-------------
Q psy9862 170 NLQILVLRENDLIEIPKE---------LGNLTRLRELHIQANRLT-VLPPEIGNL---DLASHKSVL------------- 223 (378)
Q Consensus 170 ~L~~L~l~~n~~~~l~~~---------l~~l~~L~~L~l~~~~l~-~~~~~~~~l---~~l~~l~~~------------- 223 (378)
+++.|++++|.+..++.. +..+++|+.|++++|.++ ..+..+... ..++.+...
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 444444444444433211 123467888888888775 233222221 111111111
Q ss_pred ------------ccCCCCceeccCCccccc-cccccCCcCcceeecccccCCcCCC-CCCCcccccccccccccCCCCcc
Q psy9862 224 ------------KMDFNPWLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWVT 289 (378)
Q Consensus 224 ------------~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~l~~~~~l~~l~l~~~~~~~ 289 (378)
....++.+++++|.+..+ +..+..+++|++|++++|.+..+++ .+ ..+++|+.+++++|.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF---WGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCE
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh---cCcccCCEEECCCCccCC
Confidence 124567799999999855 5568999999999999999996543 44 445889999999998743
Q ss_pred -------CccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHh
Q psy9862 290 -------PIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL 361 (378)
Q Consensus 290 -------~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~ 361 (378)
..++++.|++++|.++.+ |.++..+++|++|++++|+++++|..+ +..+++|+++++++|++.+.+|.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~-- 413 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCPR-- 413 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCTTT--
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEccCCCcccCCCc--
Confidence 466788999999999977 667899999999999999999888754 44556999999999999988763
Q ss_pred hhhhHHHHHHHhhh
Q psy9862 362 QVGISHVLDYIRSE 375 (378)
Q Consensus 362 ~~~~~~~~~~~~~~ 375 (378)
..++..|++..
T Consensus 414 ---~~~l~~~l~~~ 424 (455)
T 3v47_A 414 ---IDYLSRWLNKN 424 (455)
T ss_dssp ---THHHHHHHHHT
T ss_pred ---chHHHHHHHhC
Confidence 44455666543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.5e-30 Score=264.02 Aligned_cols=310 Identities=26% Similarity=0.380 Sum_probs=215.7
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC------CCCC----Cc-
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT------SLPI----LP- 97 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~------~~~~----~~- 97 (378)
++++|++++|.+++.. .+.+.++++|++|++++|.+.+.++... +.+++ . |+.++++ .+|. ++
T Consensus 295 ~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~-~-L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDT---LLKMR-G-LKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp TCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCT-T-CCEEECCSSEEEECCCTTHHHHTT
T ss_pred cCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHH---HhcCC-C-CCEEeCcCCccCccccHHHHhhhc
Confidence 3555555555554311 1234455666666666665554222221 22222 2 3333332 2222 22
Q ss_pred cchhccccCCcccc-cCCCCCCC--CCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCc-cCCccccCCCCCcE
Q psy9862 98 FLFLQFPCRMNRLS-SLPRGFGA--FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 173 (378)
Q Consensus 98 ~l~~~l~l~~~~l~-~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~ 173 (378)
+++ .+++++|.++ .++..+.. ++.|++|++++|.+.+ .+|..+..+++|++|++++|.++ .+|..++.+++|++
T Consensus 369 ~L~-~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 369 SLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TCS-EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCc-EEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 556 6666666665 34444444 5667777777777665 45666777777777777777776 56777777777888
Q ss_pred EecCCCCCc-cCChhhcCCCCCcEEeccCCcCc-ccCcccccccccccccccccCCCCceeccCCccc-cccccccCCcC
Q psy9862 174 LVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSR 250 (378)
Q Consensus 174 L~l~~n~~~-~l~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~-~l~~~l~~~~~ 250 (378)
|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..++.++ .+++++|.+. .+|..+..+++
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-----------~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN-----------WISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-----------EEECCSSCCCSCCCGGGGGCTT
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC-----------EEEccCCccCCcCChHHhcCCC
Confidence 888777777 55777777777888888877777 5565555554444 4999999997 78888999999
Q ss_pred cceeecccccCC-cCCCCCCCcccccccccccccCCCCccC---------------------------------------
Q psy9862 251 LRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTP--------------------------------------- 290 (378)
Q Consensus 251 L~~L~l~~n~l~-~~~~~~~~l~~~~~l~~l~l~~~~~~~~--------------------------------------- 290 (378)
|++|++++|.+. .+|..+..+ ++|+.+++++|.+.+.
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDC---RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGC---TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCEEECCCCcccCcCCHHHcCC---CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 999999999998 777666544 7778888887765432
Q ss_pred --------------------------------------ccchhhhhccCcccc-ccchhhcCCCCCCEEEeecCCCC-cC
Q psy9862 291 --------------------------------------IADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VL 330 (378)
Q Consensus 291 --------------------------------------~~~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~-~~ 330 (378)
.+.++.|++++|.++ .+|.+++.++.|++|++++|+++ .+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 234667999999998 88999999999999999999999 88
Q ss_pred ChhhccCCCccCcceeeccCCCCCccchHHhhh
Q psy9862 331 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 331 ~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~ 363 (378)
|..++.++ +|++||+++|.++|.+|+.+..
T Consensus 673 p~~l~~L~---~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 673 PDEVGDLR---GLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CGGGGGCT---TCCEEECCSSCCEECCCGGGGG
T ss_pred ChHHhCCC---CCCEEECCCCcccCcCChHHhC
Confidence 88887776 9999999999999999988764
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.4e-30 Score=260.50 Aligned_cols=167 Identities=19% Similarity=0.201 Sum_probs=139.8
Q ss_pred ccCCceeeccCCccc------------------CcCccccc--ccccccEEEcccccccCchhHHHHhhccccccCCccc
Q psy9862 28 IKNPELELADKGLSS------------------FEELPGLM--NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPI 87 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~------------------~~~~~~l~--~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~ 87 (378)
.+++.|++++|.+++ ++ +.+. ++++|++|++++|.+.+ .+|..+.+++ . |+.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~-~-L~~ 519 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLP-E-LQS 519 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCS-S-CCE
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCc----cChHHHhCCC-C-CCE
Confidence 468999999999987 33 3555 89999999999999888 6677777776 5 777
Q ss_pred cCCCCCC-------------------CCccchhccccCCcccccCCC--CCCCCCcccEEEccCCCCCCCCCCcccccCc
Q psy9862 88 LHVTSLP-------------------ILPFLFLQFPCRMNRLSSLPR--GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 146 (378)
Q Consensus 88 l~l~~~~-------------------~~~~l~~~l~l~~~~l~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~ 146 (378)
++++.-. .+++++ .|++++|.++.+|. .|.++++|++|++++|.+. .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCC
Confidence 7665432 134788 99999999999998 7999999999999999998 456 788999
Q ss_pred cccEEecCCCCCccCCccccCCCC-CcEEecCCCCCccCChhhcCCCC--CcEEeccCCcCcc
Q psy9862 147 TLRALYLGDNDFEVLPAEIGNLKN-LQILVLRENDLIEIPKELGNLTR--LRELHIQANRLTV 206 (378)
Q Consensus 147 ~L~~L~l~~n~l~~l~~~l~~l~~-L~~L~l~~n~~~~l~~~l~~l~~--L~~L~l~~~~l~~ 206 (378)
+|+.|++++|.++.+|..+..+++ |++|++++|.++.+|..+..+.. |+.|++++|.++.
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 999999999999999988888998 99999999999988877766654 9999999998874
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.2e-30 Score=261.53 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=190.9
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEc-ccccccCchhHH----------------------------------
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITL-SHNKLKGEIIVQ---------------------------------- 72 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-s~~~l~~~~~~~---------------------------------- 72 (378)
.+++.|+|+++.+.+.- .+.+.++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 67999999999998622 257889999999999 888765531100
Q ss_pred --HHhhcc---------ccccCCccccCCCC-------CC----CCccchhccccCCccccc------------------
Q psy9862 73 --VIKGLS---------NSKYNYIPILHVTS-------LP----ILPFLFLQFPCRMNRLSS------------------ 112 (378)
Q Consensus 73 --~~~~l~---------~l~~~~l~~l~l~~-------~~----~~~~l~~~l~l~~~~l~~------------------ 112 (378)
++..+. ......++.+.+.. +| .+++++ .|++++|.++.
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~-~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ-IIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCC-EEECcCCcCCCCccccccccccccccccc
Confidence 000000 00000133333333 44 378888 99999999997
Q ss_pred CCCCCC--CCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-Cc--cCCccccCCC-------CCcEEecCCCC
Q psy9862 113 LPRGFG--AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FE--VLPAEIGNLK-------NLQILVLREND 180 (378)
Q Consensus 113 ~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~--~l~~~l~~l~-------~L~~L~l~~n~ 180 (378)
+|..++ .+++|++|++++|.+.+ .+|..+..+++|++|++++|+ ++ .+|..++.+. +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 898877 99999999999999876 678889999999999999998 77 3776665554 99999999999
Q ss_pred CccCCh--hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcC-cceeecc
Q psy9862 181 LIEIPK--ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSR-LRELHIQ 257 (378)
Q Consensus 181 ~~~l~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~-L~~L~l~ 257 (378)
++.+|. .+..+++|+.|++++|.++.+| .++.++.++. +++++|.+..+|..+..+++ |+.|+++
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~-----------L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD-----------LKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE-----------EECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE-----------EECcCCccccchHHHhhccccCCEEECc
Confidence 999988 8999999999999999998777 6666665554 66666666666666666666 6666666
Q ss_pred cccCCcCCCCCCCcccccccccccccCCCCccCc------------cchhhhhccCccccccchhhc-CCCCCCEEEeec
Q psy9862 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPI------------ADQLQLVLRENDLIEIPKELG-NLSRLRELHIQA 324 (378)
Q Consensus 258 ~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~------------~~l~~L~l~~n~l~~l~~~l~-~~~~L~~L~l~~ 324 (378)
+|.+..+|..+.... .++|+.+++++|.+.+.. ++++.|++++|.++.+|..+. .+++|++|++++
T Consensus 628 ~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 666665554432221 122444555554443321 134444444444444444332 344444444444
Q ss_pred CCCCcCCh
Q psy9862 325 NRLTVLPP 332 (378)
Q Consensus 325 n~l~~~~~ 332 (378)
|+++.+|.
T Consensus 707 N~L~~ip~ 714 (876)
T 4ecn_A 707 NLMTSIPE 714 (876)
T ss_dssp CCCSCCCT
T ss_pred CcCCccCh
Confidence 44444443
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.4e-30 Score=255.20 Aligned_cols=328 Identities=16% Similarity=0.127 Sum_probs=216.8
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccc------cC------chhHH-----------------HHhhcc
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKL------KG------EIIVQ-----------------VIKGLS 78 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l------~~------~~~~~-----------------~~~~l~ 78 (378)
.+++.|+|+++.+.+.- .+.+.++++|++|++++|.+ .+ .++.. .+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEE-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcC-ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999999998622 25788999999999999965 11 00000 000000
Q ss_pred ---------c--------cccCCcccc-------CCCCCC----CCccchhccccCCccccc------------------
Q psy9862 79 ---------N--------SKYNYIPIL-------HVTSLP----ILPFLFLQFPCRMNRLSS------------------ 112 (378)
Q Consensus 79 ---------~--------l~~~~l~~l-------~l~~~~----~~~~l~~~l~l~~~~l~~------------------ 112 (378)
+ .....++.+ .+.++| .+++++ ++++++|.++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLR-QFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCC-EEECcCCccccccccccccccccchhccc
Confidence 0 000001111 122233 377888 99999999997
Q ss_pred CCCCCC--CCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-Cc--cCCccccCC------CCCcEEecCCCCC
Q psy9862 113 LPRGFG--AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FE--VLPAEIGNL------KNLQILVLRENDL 181 (378)
Q Consensus 113 ~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~--~l~~~l~~l------~~L~~L~l~~n~~ 181 (378)
+|..+. ++++|++|++++|.+.+ .+|..+..+++|++|++++|. ++ .+|..++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 999988 99999999999999887 678889999999999999998 77 478777766 8999999999999
Q ss_pred ccCCh--hhcCCCCCcEEeccCCcCc-ccCcccccccccccccc------------cccCC-CCceeccCCccccccccc
Q psy9862 182 IEIPK--ELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHKSV------------LKMDF-NPWLVLRENDLIEIPKEL 245 (378)
Q Consensus 182 ~~l~~--~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~~l~~l~~------------~~~~~-~~~l~l~~~~l~~l~~~l 245 (378)
+.+|. .+..+++|+.|++++|.++ .+| .+..+..++.+.. ..+.. ++.+++++|.++.+|..+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 99988 8999999999999999998 787 6766666655432 23344 666777777777776655
Q ss_pred cCCc--CcceeecccccCC-cCCCCCC-------Cc---------------------ccccccccccccCCCCccCc---
Q psy9862 246 GNLS--RLRELHIQANRLT-VLPPEIG-------NL---------------------DLASHKSVLKMDFNPWVTPI--- 291 (378)
Q Consensus 246 ~~~~--~L~~L~l~~n~l~-~~~~~~~-------~l---------------------~~~~~l~~l~l~~~~~~~~~--- 291 (378)
..++ +|++|++++|.+. .+|..+. .+ ..+++|+.+++++|.+..-.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 4433 6666666666665 2332222 00 11233444444444433100
Q ss_pred -----------cchhhhhccCccccccchhhc--CCCCCCEEEeecCCCCcCChhhccCCCccCcceeec------cCCC
Q psy9862 292 -----------ADQLQLVLRENDLIEIPKELG--NLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM------DFNP 352 (378)
Q Consensus 292 -----------~~l~~L~l~~n~l~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l------~~n~ 352 (378)
++++.|++++|.++.+|..+. .+++|++|++++|+++++|..+..++ +|++|++ ++|.
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~---~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS---TLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCS---SCCEEECCSCBCTTCCB
T ss_pred hccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCC---CCCEEECCCCcccccCc
Confidence 155566666666666666554 66666666666666666665555443 6666666 3455
Q ss_pred CCccchHHhh
Q psy9862 353 WVTPIADQLQ 362 (378)
Q Consensus 353 ~~~~~~~~~~ 362 (378)
+.+.+|+.+.
T Consensus 554 l~~~~p~~l~ 563 (636)
T 4eco_A 554 TLREWPEGIT 563 (636)
T ss_dssp CCCCCCTTGG
T ss_pred ccccChHHHh
Confidence 6666665553
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=246.18 Aligned_cols=315 Identities=18% Similarity=0.254 Sum_probs=208.7
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CCCC--CCccch
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TSLP--ILPFLF 100 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~~~--~~~~l~ 100 (378)
.+++.|++++|.++.+. ...+.++++|++|++++|.+++ ..|..+.+++ . |+.+++ ..+| .+++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~-~-L~~L~Ls~N~l~~lp~~~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQY----LDISVFKFNQ-E-LEYLDLSHNKLVKISCHPTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCT-T-CCEEECCSSCCCEEECCCCCCCS
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCccCC----cChHHhhccc-C-CCEEecCCCceeecCccccCCcc
Confidence 57899999999998743 1357799999999999999986 3345555554 3 444433 2233 367777
Q ss_pred hccccCCccccc--CCCCCCCCCcccEEEccCCCCCCCCCCcccccCccc--cEEecCCCCC--c-cCCccccC------
Q psy9862 101 LQFPCRMNRLSS--LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL--RALYLGDNDF--E-VLPAEIGN------ 167 (378)
Q Consensus 101 ~~l~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L--~~L~l~~n~l--~-~l~~~l~~------ 167 (378)
++++++|.++. +|..|+++++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..|..+..
T Consensus 94 -~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 94 -HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp -EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred -EEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 88888888775 45667788888888888887764 235556666 8888887776 2 22332222
Q ss_pred --------------------CC---------------------------------------------------------C
Q psy9862 168 --------------------LK---------------------------------------------------------N 170 (378)
Q Consensus 168 --------------------l~---------------------------------------------------------~ 170 (378)
++ +
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 11 4
Q ss_pred CcEEecCCCCCc-cCChhh-----cCC------------------------------------------------CCCcE
Q psy9862 171 LQILVLRENDLI-EIPKEL-----GNL------------------------------------------------TRLRE 196 (378)
Q Consensus 171 L~~L~l~~n~~~-~l~~~l-----~~l------------------------------------------------~~L~~ 196 (378)
|++|++++|.++ .+|..+ ..+ ++|++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 555555555554 344433 222 22333
Q ss_pred EeccCCcCcc-cCcccccccccccccccccCCCCceeccCCcccc---ccccccCCcCcceeecccccCCc-CCCCCCCc
Q psy9862 197 LHIQANRLTV-LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIE---IPKELGNLSRLRELHIQANRLTV-LPPEIGNL 271 (378)
Q Consensus 197 L~l~~~~l~~-~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~---l~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~l 271 (378)
|++++|.++. .|..+. .+..++.+++++|.+.. +|..+..+++|++|++++|.+.. +|.. .+
T Consensus 329 L~Ls~n~l~~~~~~~~~-----------~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~ 395 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCG-----------HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DC 395 (520)
T ss_dssp EECCSSCCCTTTTTTCC-----------CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--SC
T ss_pred EEeECCccChhhhhhhc-----------cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--hh
Confidence 3333333321 222222 22333447777777763 34556777788888888887775 6543 23
Q ss_pred ccccccccccccCCCCccCc-----cchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCccee
Q psy9862 272 DLASHKSVLKMDFNPWVTPI-----ADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 346 (378)
Q Consensus 272 ~~~~~l~~l~l~~~~~~~~~-----~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l 346 (378)
..+++|+.+++++|.+.+.. ++++.|++++|+++.+|.++..+++|++|++++|+++.+|.. .+..+++|+++
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L 473 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQKI 473 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEE
T ss_pred ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccEE
Confidence 44578888899988875432 578999999999999999888999999999999999999886 24455699999
Q ss_pred eccCCCCCccchHHhhhhhHHH-HHHHhhh
Q psy9862 347 KMDFNPWVTPIADQLQVGISHV-LDYIRSE 375 (378)
Q Consensus 347 ~l~~n~~~~~~~~~~~~~~~~~-~~~~~~~ 375 (378)
++++|++.+.++ ..++ ..|++..
T Consensus 474 ~l~~N~~~c~c~------~~~~~~~~~~~~ 497 (520)
T 2z7x_B 474 WLHTNPWDCSCP------RIDYLSRWLNKN 497 (520)
T ss_dssp ECCSSCBCCCHH------HHHHHHHHHHHT
T ss_pred ECcCCCCcccCC------chHHHHHHHHhc
Confidence 999999987764 3444 6666543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.2e-29 Score=247.30 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=93.7
Q ss_pred CCCCceeccCCcccc-ccccccCCcCcceeecccccCCc--CCCCCCCcccccccccccccCCCCcc-------Cccchh
Q psy9862 226 DFNPWLVLRENDLIE-IPKELGNLSRLRELHIQANRLTV--LPPEIGNLDLASHKSVLKMDFNPWVT-------PIADQL 295 (378)
Q Consensus 226 ~~~~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~l~~~~~l~~l~l~~~~~~~-------~~~~l~ 295 (378)
..++.+++++|.+.. .|..+..+++|++|++++|.+.. +|..+ ..+++|+.+++++|.+.+ ..++++
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF---ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh---ccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 334455666665553 34445666666666666666653 34433 334677778888776643 455677
Q ss_pred hhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 296 QLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 296 ~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
.|++++|.++.+ |.++..+++|++|++++|+++.+|..+..++ ++++++++++|++.+.++ ..++.+|+++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~--~~L~~l~l~~N~~~c~c~------~~~~~~~l~~ 572 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP--KSLAFFNLTNNSVACICE------HQKFLQWVKE 572 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSC--TTCCEEECCSCCCCCSST------THHHHTTTTT
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhc--ccCcEEEccCCCcccCCc------cHHHHHHHHc
Confidence 888888888865 6678888889999999998888887765553 258999999999976554 4556667655
Q ss_pred h
Q psy9862 375 E 375 (378)
Q Consensus 375 ~ 375 (378)
.
T Consensus 573 ~ 573 (606)
T 3vq2_A 573 Q 573 (606)
T ss_dssp S
T ss_pred C
Confidence 3
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=240.48 Aligned_cols=298 Identities=21% Similarity=0.255 Sum_probs=227.3
Q ss_pred hhhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccc
Q psy9862 25 SKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFP 104 (378)
Q Consensus 25 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~ 104 (378)
..+..++.|++++|.++.+. ...+.++++|++|++++|.+++ ..+..+.++ ++|+ +|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l----------------~~L~-~L~ 86 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSA----VEPGAFNNL----------------FNLR-TLG 86 (477)
T ss_dssp CCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCE----ECTTTTTTC----------------TTCC-EEE
T ss_pred CCCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCE----eChhhhhCC----------------ccCC-EEE
Confidence 34457899999999998754 2467799999999999998875 223344433 3667 889
Q ss_pred cCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCc
Q psy9862 105 CRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLI 182 (378)
Q Consensus 105 l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~ 182 (378)
+++|.++.++.. |.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 999999988776 7889999999999999876 3466788889999999999988854 556788899999999999998
Q ss_pred cCCh-hhcCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccCCcc-ccccccccCCcCcceeecccc
Q psy9862 183 EIPK-ELGNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRENDL-IEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 183 ~l~~-~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~~~l-~~l~~~l~~~~~L~~L~l~~n 259 (378)
.++. .+..+++|+.|++++|.+..++. .+..+..++ .+++++|.. ..++.......+|++|++++|
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-----------~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK-----------VLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC-----------EEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc-----------eeeCCCCccccccCcccccCccccEEECcCC
Confidence 8765 47889999999999998885543 344444333 366766643 456655555667888888888
Q ss_pred cCCcCCCCCCCcccccccccccccCCCCc-------cCccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCC
Q psy9862 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWV-------TPIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 260 ~l~~~~~~~~~l~~~~~l~~l~l~~~~~~-------~~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
.+..+|.. .+..+++|+.+++++|.+. ...++++.|++++|.++.+ +.++..+++|++|++++|++++++
T Consensus 235 ~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 235 NLTAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp CCCSCCHH--HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred cccccCHH--HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 87766632 1334467777888877653 3456788999999999966 567889999999999999999888
Q ss_pred hhhccCCCccCcceeeccCCCCCccchHH
Q psy9862 332 PEIGNLDLASHKSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 332 ~~~~~l~~~~~l~~l~l~~n~~~~~~~~~ 360 (378)
... +..+++|+++++++|++.+.+.-.
T Consensus 313 ~~~--~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 313 ESV--FHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp GGG--BSCGGGCCEEECCSSCEECSGGGH
T ss_pred HhH--cCCCcccCEEEccCCCccCccchH
Confidence 754 445569999999999998776443
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.5e-28 Score=224.11 Aligned_cols=290 Identities=21% Similarity=0.264 Sum_probs=181.0
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CC---CCCCcc
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TS---LPILPF 98 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~---~~~~~~ 98 (378)
..+++.|+++++.+..+ +.+..+++|++|++++|.+++. +. +..++ . |+.+++ .. +..+++
T Consensus 43 l~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~i~~~-----~~-~~~l~-~-L~~L~L~~n~i~~~~~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDI-----SP-LSNLV-K-LTNLYIGTNKITDISALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC-----GG-GTTCT-T-CCEEECCSSCCCCCGGGTTCTT
T ss_pred cccccEEEEeCCccccc---hhhhhcCCccEEEccCCccccc-----hh-hhcCC-c-CCEEEccCCcccCchHHcCCCc
Confidence 35689999999999764 4577899999999999998852 21 33333 2 333322 22 223555
Q ss_pred chhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCC
Q psy9862 99 LFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRE 178 (378)
Q Consensus 99 l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 178 (378)
++ ++++++|.++.++. +..+++|++|++++|.... . ...+..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 112 L~-~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LR-ELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-D-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp CS-EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-C-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT
T ss_pred CC-EEECcCCcccCchh-hccCCceeEEECCCCCCcc-c-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC
Confidence 55 66666666655544 5556666666666664332 1 2235556666666666665554433 45556666666666
Q ss_pred CCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeeccc
Q psy9862 179 NDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA 258 (378)
Q Consensus 179 n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 258 (378)
|.+..++. +..+++|+.+++++|.++.++. +..+ ..++.+++++|.++.++. +..+++|++|++++
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~-----------~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDITP-VANM-----------TRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGC-----------TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred Cccccccc-ccCCCccceeecccCCCCCCch-hhcC-----------CcCCEEEccCCccCCCcc-hhcCCCCCEEECCC
Confidence 66655543 5556666666666665554432 2222 333447777887777765 77778888888888
Q ss_pred ccCCcCCCCCCCcccccccccccccCCCCc-----cCccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCCh
Q psy9862 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWV-----TPIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPP 332 (378)
Q Consensus 259 n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~-----~~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~ 332 (378)
|.+..++ .+..+++|+.+++++|.+. ..+++++.|++++|.++.. +..+..+++|++|++++|+++++++
T Consensus 253 n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 253 NQISDIN----AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SCCCCCG----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CccCCCh----hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 8777652 2445567777777777654 3456677788888887744 4557778888888888888876655
Q ss_pred hhccCCCccCcceeeccCCCCC
Q psy9862 333 EIGNLDLASHKSVLKMDFNPWV 354 (378)
Q Consensus 333 ~~~~l~~~~~l~~l~l~~n~~~ 354 (378)
+..+ ++|+++++++|+++
T Consensus 329 -~~~l---~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASL---SKMDSADFANQVIK 346 (347)
T ss_dssp -GGGC---TTCSEESSSCC---
T ss_pred -hhhh---hccceeehhhhccc
Confidence 3333 47888888888764
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=242.12 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=194.8
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CCCC--CCccch
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TSLP--ILPFLF 100 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~~~--~~~~l~ 100 (378)
.+++.|++++|.++.+. ...+.++++|++|++++|.+++ ..|..+..++ . |+.+++ ..+| .+++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~-~-L~~L~Ls~N~l~~lp~~~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQ-D-LEYLDVSHNRLQNISCCPMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCT-T-CCEEECTTSCCCEECSCCCTTCS
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCc----CCHHHhCCCC-C-CCEEECCCCcCCccCccccccCC
Confidence 56778888888877643 1356678888888888887775 2233344433 2 333332 2233 356666
Q ss_pred hccccCCcccccCC--CCCCCCCcccEEEccCCCCCCCCCCcccccCccc--cEEecCCCCC--c-cCCccccC------
Q psy9862 101 LQFPCRMNRLSSLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL--RALYLGDNDF--E-VLPAEIGN------ 167 (378)
Q Consensus 101 ~~l~l~~~~l~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L--~~L~l~~n~l--~-~l~~~l~~------ 167 (378)
++++++|.++.++ ..|.++++|++|++++|.+... .+..+++| ++|++++|.+ + ..|..+..
T Consensus 125 -~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 125 -HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp -EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred -EEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 7777777776543 4466777777777777776541 22333333 6666666655 2 12222221
Q ss_pred --------------------CC-------------------------------------------------------CCc
Q psy9862 168 --------------------LK-------------------------------------------------------NLQ 172 (378)
Q Consensus 168 --------------------l~-------------------------------------------------------~L~ 172 (378)
++ +|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 11 344
Q ss_pred EEecCCCCCc-cCChhh-----------------------------------------------------cCCCCCcEEe
Q psy9862 173 ILVLRENDLI-EIPKEL-----------------------------------------------------GNLTRLRELH 198 (378)
Q Consensus 173 ~L~l~~n~~~-~l~~~l-----------------------------------------------------~~l~~L~~L~ 198 (378)
+|++++|.++ .+|..+ ..+++|++|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 359 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence 4444444443 333222 3344555555
Q ss_pred ccCCcCcc-cCcccccccccccccccccCCCCceeccCCcccccc---ccccCCcCcceeecccccCCc-CCCCCCCccc
Q psy9862 199 IQANRLTV-LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP---KELGNLSRLRELHIQANRLTV-LPPEIGNLDL 273 (378)
Q Consensus 199 l~~~~l~~-~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~---~~l~~~~~L~~L~l~~n~l~~-~~~~~~~l~~ 273 (378)
+++|.++. .|..+..++ .++.+++++|.++.++ ..+..+++|++|++++|.+.. +|... +..
T Consensus 360 l~~n~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~ 426 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLK-----------RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT--CAW 426 (562)
T ss_dssp CCSSCCCTTTTTTCCSCS-----------SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC--CCC
T ss_pred CCCCccccchhhhhcccC-----------CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh--hcC
Confidence 55555542 333333333 3334777788777543 456778888888888888875 66542 344
Q ss_pred ccccccccccCCCCccCc-----cchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeec
Q psy9862 274 ASHKSVLKMDFNPWVTPI-----ADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 348 (378)
Q Consensus 274 ~~~l~~l~l~~~~~~~~~-----~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l 348 (378)
+++|+.+++++|.+.+.. ++++.|++++|.++++|..+..+++|++|++++|+++.+|.. .+..+++++++++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l 504 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWL 504 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEEC
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEe
Confidence 578888889988875432 578999999999999999888999999999999999999987 2344569999999
Q ss_pred cCCCCCccchHH
Q psy9862 349 DFNPWVTPIADQ 360 (378)
Q Consensus 349 ~~n~~~~~~~~~ 360 (378)
++|++.+.++-.
T Consensus 505 ~~N~~~c~c~~~ 516 (562)
T 3a79_B 505 HDNPWDCTCPGI 516 (562)
T ss_dssp CSCCBCCCHHHH
T ss_pred cCCCcCCCcchH
Confidence 999998887643
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.6e-28 Score=240.34 Aligned_cols=133 Identities=18% Similarity=0.280 Sum_probs=86.2
Q ss_pred CceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCcc---CccchhhhhccCcccc
Q psy9862 229 PWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT---PIADQLQLVLRENDLI 305 (378)
Q Consensus 229 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~---~~~~l~~L~l~~n~l~ 305 (378)
+.+++++|.++.+|..+..+++|++|++++|.++.++..+ .++|+.+++++|.+.+ ..+++++|++++|+++
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-----PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-----CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-----cCCceEEECCCCChhhhcccCChhcEEECCCCccC
Confidence 3344444444444443444444444444444444333221 1356666777766553 5677888999999999
Q ss_pred ccchhhcCCCCCCEEEeecCCCCcCChh-hccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 306 EIPKELGNLSRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 306 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
.+|. ...+++|++|++++|+++++++. +..+ ++|+++++++|++.+.+|. ...+.+|++..
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~l~~N~~~~~~~~-----~~~l~~~l~~~ 526 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL---TSLQKIWLHTNPWDCSCPR-----IDYLSRWLNKN 526 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC---TTCCEEECCSSCBCCCHHH-----HHHHHHHHHHC
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcC---cccCEEEecCCCccCCCcc-----HHHHHHHHHhc
Confidence 8887 46789999999999999977764 4444 5999999999999888752 44555666554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.5e-28 Score=241.75 Aligned_cols=268 Identities=19% Similarity=0.234 Sum_probs=116.3
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCc-cCCc-cccCCCCCcE
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPA-EIGNLKNLQI 173 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~-~l~~l~~L~~ 173 (378)
+++++ ++++++|.++.+|..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. .++. .+..+++|++
T Consensus 277 l~~L~-~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQ-ELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCS-EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccCCC-EEeccCCccCCCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 33444 4444444444444444444444444444444443 11233444444444444444433 2222 2444455555
Q ss_pred EecCCCCCccC---ChhhcCCCCCcEEeccCCcCccc-Cccccccccccccc--------------ccccCCCCceeccC
Q psy9862 174 LVLRENDLIEI---PKELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKS--------------VLKMDFNPWLVLRE 235 (378)
Q Consensus 174 L~l~~n~~~~l---~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~--------------~~~~~~~~~l~l~~ 235 (378)
|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..++.++.+. +..+..++.+++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 55555554432 33445555555555555554422 22333333322211 11122233344444
Q ss_pred Cccccc-cccccCCcCcceeecccccCCcC-CCCCCCcccccccccccccCCCCcc-------CccchhhhhccCccccc
Q psy9862 236 NDLIEI-PKELGNLSRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWVT-------PIADQLQLVLRENDLIE 306 (378)
Q Consensus 236 ~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~~-------~~~~l~~L~l~~n~l~~ 306 (378)
|.+... +..+..+++|++|++++|.+... ......+..+++|+.+++++|.+.+ ..++++.|++++|.++.
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 444322 22234444444444444444321 1111223333444444444444322 23344445555555542
Q ss_pred -cchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 307 -IPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 307 -l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
.|.++..++.| +|++++|+++++++.. +..+++++++++++|++.+.+ ...++.+|++.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c------~~~~~~~w~~~ 574 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSL--LPILSQQRTINLRQNPLDCTC------SNIYFLEWYKE 574 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGG--HHHHHTSSEEECTTCCEECSG------GGHHHHHHHHH
T ss_pred CChhHhCccccc-EEECcCCcccccCHhh--cccCCCCCEEeCCCCCccccC------CcHHHHHHHHh
Confidence 23344555555 5555555555443321 122236666677777765544 45566677764
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.4e-28 Score=227.14 Aligned_cols=300 Identities=21% Similarity=0.245 Sum_probs=197.9
Q ss_pred hccCCceeeccCCcccCcCccc-ccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcccc
Q psy9862 27 EIKNPELELADKGLSSFEELPG-LMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPC 105 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l 105 (378)
..+++.++++++.+..++ +. +..+++|++|++++|.+.+ ..+..+..++ +++ ++++
T Consensus 44 l~~l~~l~l~~~~l~~l~--~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~----------------~L~-~L~L 100 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEE----IDTYAFAYAH----------------TIQ-KLYM 100 (390)
T ss_dssp GCCCSEEEEESCEESEEC--THHHHHCCCCSEEECTTSCCCE----ECTTTTTTCT----------------TCC-EEEC
T ss_pred cCCceEEEecCCchhhCC--hhHhcccccCcEEECCCCcccc----cChhhccCCC----------------CcC-EEEC
Confidence 356788888888887654 33 5588899999999988774 2222333333 444 6666
Q ss_pred CCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCc-ccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCc
Q psy9862 106 RMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLI 182 (378)
Q Consensus 106 ~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~-~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~ 182 (378)
++|.++.++.. |.++++|++|++++|.+.. ++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 66666655433 5666666666666666653 222 245566666666666666544 334556666666666666665
Q ss_pred cCChhhcCCCCCcEEeccCCcCccc--Cccccccc----ccccccccccCCCCceeccCCccccccccccCCcCcceeec
Q psy9862 183 EIPKELGNLTRLRELHIQANRLTVL--PPEIGNLD----LASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHI 256 (378)
Q Consensus 183 ~l~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~l~----~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l 256 (378)
.++ +..+++|+.+++++|.++.+ +..+..+. .+..........++.+++++|.++.. ..+..+++|++|++
T Consensus 179 ~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 179 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDL 255 (390)
T ss_dssp BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEEC
Confidence 543 33445555555555544421 11111110 00000111123455688999988876 46788999999999
Q ss_pred ccccCCcC-CCCCCCcccccccccccccCCCCcc------CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCc
Q psy9862 257 QANRLTVL-PPEIGNLDLASHKSVLKMDFNPWVT------PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 329 (378)
Q Consensus 257 ~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~~------~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~ 329 (378)
++|.+..+ +..+ ..+++|+.+++++|.+.+ ..++++.|++++|.++.+|..+..+++|++|++++|+++.
T Consensus 256 s~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 256 SYNELEKIMYHPF---VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CSSCCCEEESGGG---TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCcCCCcChhHc---cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce
Confidence 99998855 4343 445788999999987753 5788999999999999999989999999999999999998
Q ss_pred CChhhccCCCccCcceeeccCCCCCccchHHhh
Q psy9862 330 LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 330 ~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
++ +..+++|+++++++|++.+.....+.
T Consensus 333 ~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 333 LK-----LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CC-----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred eC-----chhhccCCEEEcCCCCccchhHHHHH
Confidence 75 33445999999999999876655543
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.4e-28 Score=240.76 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=179.7
Q ss_pred hhhhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 24 ESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 24 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
...+..++.|++++|.++.+. ...+.++++|++|++++|.+.+ ..|..+.+++ +++ ++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~----------------~L~-~L 86 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQH----------------RLD-TL 86 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCT----------------TCC-EE
T ss_pred CCCCCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccce----eChhhccCcc----------------ccC-ee
Confidence 344567999999999999754 2467899999999999999876 3344455544 444 66
Q ss_pred ccCCcccccC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccccCCCCCcEEecCCCCC
Q psy9862 104 PCRMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLRENDL 181 (378)
Q Consensus 104 ~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~ 181 (378)
++++|.++.+ |..|.++++|++|++++|.+.... +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 6666666543 334666666666666666665421 334556666666666666665431 2222356666666666666
Q ss_pred ccC-ChhhcCCCCCc--EEeccCCcCcccCcccccccccccc--------------------------------------
Q psy9862 182 IEI-PKELGNLTRLR--ELHIQANRLTVLPPEIGNLDLASHK-------------------------------------- 220 (378)
Q Consensus 182 ~~l-~~~l~~l~~L~--~L~l~~~~l~~~~~~~~~l~~l~~l-------------------------------------- 220 (378)
+.+ +..+..+++|+ .+++++|.++.+++.......++.+
T Consensus 166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred cccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 654 33455666666 5666666655333222111111000
Q ss_pred ---------------------------cccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccc
Q psy9862 221 ---------------------------SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 273 (378)
Q Consensus 221 ---------------------------~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~ 273 (378)
.+..+..++.+++++|.++.+|..+..+++|++|++++|.+..+++ ..+..
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~ 323 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ--ISASN 323 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG--GCGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch--hhhhc
Confidence 0122334445666666666666556666666666666666554322 11233
Q ss_pred ccccccccccCCCCc--------cCccchhhhhccCcccccc---chhhcCCCCCCEEEeecCCCCcCChhhccCCCccC
Q psy9862 274 ASHKSVLKMDFNPWV--------TPIADQLQLVLRENDLIEI---PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 342 (378)
Q Consensus 274 ~~~l~~l~l~~~~~~--------~~~~~l~~L~l~~n~l~~l---~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~ 342 (378)
+++|+.+++++|.+. +..++++.|++++|.++.+ +..+..+++|++|++++|.++++++.. +..+++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~ 401 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQ 401 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCcc
Confidence 355666666665432 2345566677777776644 445666777777777777776443321 233347
Q ss_pred cceeeccCCCCCccchHH
Q psy9862 343 KSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 343 l~~l~l~~n~~~~~~~~~ 360 (378)
|+++++++|.+.+..++.
T Consensus 402 L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CSEEECTTCCEECCTTCC
T ss_pred CCeEECCCCcCCCcccch
Confidence 777777777776655443
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.1e-28 Score=236.65 Aligned_cols=322 Identities=20% Similarity=0.222 Sum_probs=210.6
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC----------CCCCC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT----------SLPIL 96 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~----------~~~~~ 96 (378)
+..++.|++++|.++.++. ..+.++++|++|++++|.+++ ..+..+.+++ . |+.++++ .+..+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~-~-L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT----IEDGAYQSLS-H-LSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CSSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCE----ECTTTTTTCT-T-CCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCc----cCcccccCch-h-CCEEeCcCCcCCccCHhhhcCc
Confidence 3467888888888876441 356678888888888887764 2223334333 3 4444332 22346
Q ss_pred ccchhccccCCcccccCCC-CCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccc---------
Q psy9862 97 PFLFLQFPCRMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEI--------- 165 (378)
Q Consensus 97 ~~l~~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l--------- 165 (378)
++++ ++++++|.++.++. .|..+++|++|++++|.+....+|..+.++++|++|++++|.++.++ ..+
T Consensus 100 ~~L~-~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 100 SSLQ-KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp TTCC-EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred cccc-cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 6777 77777777776655 37777777777777777765445666777777777777766554221 111
Q ss_pred --------------------------------------------------------------------------------
Q psy9862 166 -------------------------------------------------------------------------------- 165 (378)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (378)
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence
Q ss_pred --------------------cCCCCCcEEecCCCCCccCChhh-------------------------------------
Q psy9862 166 --------------------GNLKNLQILVLRENDLIEIPKEL------------------------------------- 188 (378)
Q Consensus 166 --------------------~~l~~L~~L~l~~n~~~~l~~~l------------------------------------- 188 (378)
..+++|++|++++|.++.+|..+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccc
Confidence 11233444444444433333221
Q ss_pred -----cCCCCCcEEeccCCcCccc---Cccccccccccccc------------ccccCCCCceeccCCccccccc--ccc
Q psy9862 189 -----GNLTRLRELHIQANRLTVL---PPEIGNLDLASHKS------------VLKMDFNPWLVLRENDLIEIPK--ELG 246 (378)
Q Consensus 189 -----~~l~~L~~L~l~~~~l~~~---~~~~~~l~~l~~l~------------~~~~~~~~~l~l~~~~l~~l~~--~l~ 246 (378)
..+++|+.|++++|.++.. +..+..++.++.+. +..+..++.+++++|.+...+. .+.
T Consensus 339 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhh
Confidence 2456677777777776633 33444444443322 2234556678888888775543 577
Q ss_pred CCcCcceeecccccCCcC-CCCCCCcccccccccccccCCCCc--------cCccchhhhhccCcccccc-chhhcCCCC
Q psy9862 247 NLSRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWV--------TPIADQLQLVLRENDLIEI-PKELGNLSR 316 (378)
Q Consensus 247 ~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~--------~~~~~l~~L~l~~n~l~~l-~~~l~~~~~ 316 (378)
.+++|++|++++|.+... +.. +..+++|+.+++++|.+. +.+++++.|++++|.++.+ |.++..+++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEeCcCCcccccchhh---hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 888888888888888743 333 344578888999988764 3466788999999999977 778899999
Q ss_pred CCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHh
Q psy9862 317 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL 361 (378)
Q Consensus 317 L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~ 361 (378)
|++|++++|+++++++.. +..+++|+++++++|++.+.+|..+
T Consensus 496 L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCEEeCCCCcCCCCCHHH--hhcccCCcEEEecCCcccCCCcchH
Confidence 999999999999887643 4445699999999999999887644
No 18
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4e-27 Score=224.39 Aligned_cols=307 Identities=25% Similarity=0.321 Sum_probs=173.3
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCC-ccchhccccC
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPIL-PFLFLQFPCR 106 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~-~~l~~~l~l~ 106 (378)
.++++|+++++.+++++.+ .++|++|++++|.+++ ++ ..+..+..+. +....+..++.. ++++ +++++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~-----~~~L~~L~l~~n~l~~-lp-~~~~~L~~L~---l~~n~l~~l~~~~~~L~-~L~L~ 139 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLTE-LP-ELPQSLKSLL---VDNNNLKALSDLPPLLE-YLGVS 139 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC-----CTTCSEEECCSSCCSS-CC-CCCTTCCEEE---CCSSCCSCCCSCCTTCC-EEECC
T ss_pred cCCCEEEecCCccccCCCC-----cCCCCEEEccCCcCCc-cc-cccCCCcEEE---CCCCccCcccCCCCCCC-EEECc
Confidence 4578899999998876543 3688899999888875 22 1223333333 555556666554 5777 88888
Q ss_pred CcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCCh
Q psy9862 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPK 186 (378)
Q Consensus 107 ~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~ 186 (378)
+|.++.+| .|..+++|++|++++|.+.+ ++.. ..+|++|++++|.++.+| .++.+++|++|++++|.++.+|.
T Consensus 140 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 140 NNQLEKLP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCCc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC
Confidence 88888877 48888888888888888774 3432 246777777777777666 46666677777777766665543
Q ss_pred hhcCCCCCcEEeccCCcCcccCcccccccccccccccc---------cCCCCceeccCCccccccccccCCcCcceeecc
Q psy9862 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK---------MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQ 257 (378)
Q Consensus 187 ~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~---------~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~ 257 (378)
.. .+|++|++++|.++.+|. ++.++.++.+.... +..++.+++++|.+..+|.. .++|++|+++
T Consensus 213 ~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 213 LP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVS 285 (454)
T ss_dssp CC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred Cc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECc
Confidence 21 355666666665555542 33333333322111 12334466666666655542 2556666666
Q ss_pred cccCCcCCC---CCCCc----------ccc-cccccccccCCCCcc---CccchhhhhccCccccccchhhcCCCCCCEE
Q psy9862 258 ANRLTVLPP---EIGNL----------DLA-SHKSVLKMDFNPWVT---PIADQLQLVLRENDLIEIPKELGNLSRLREL 320 (378)
Q Consensus 258 ~n~l~~~~~---~~~~l----------~~~-~~l~~l~l~~~~~~~---~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L 320 (378)
+|.+..++. .+..+ ... ++|+.+++++|.+.+ .+++++.|++++|.++.+|. .+++|++|
T Consensus 286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L 362 (454)
T 1jl5_A 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE---LPQNLKQL 362 (454)
T ss_dssp SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred CCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccc---hhhhccEE
Confidence 666553321 11111 111 466777777776654 23567778888888887776 46788888
Q ss_pred EeecCCCCc---CChhhccCCC----------ccCcceeeccCCCCCc--cchHHhh
Q psy9862 321 HIQANRLTV---LPPEIGNLDL----------ASHKSVLKMDFNPWVT--PIADQLQ 362 (378)
Q Consensus 321 ~l~~n~l~~---~~~~~~~l~~----------~~~l~~l~l~~n~~~~--~~~~~~~ 362 (378)
++++|++++ +|..++.+.. .++|+++++++|++.+ .+|+.+.
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 888888876 4444444311 1578888888888877 6766553
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-27 Score=235.68 Aligned_cols=300 Identities=21% Similarity=0.239 Sum_probs=198.5
Q ss_pred hccCCceeeccCCcccCcCccc-ccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcccc
Q psy9862 27 EIKNPELELADKGLSSFEELPG-LMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPC 105 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l 105 (378)
..+++.++++++.+..++ +. +..+++|++|++++|.+++ ..+..+..++ +++ .|++
T Consensus 50 l~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~----------------~L~-~L~L 106 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEE----IDTYAFAYAH----------------TIQ-KLYM 106 (597)
T ss_dssp GCCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCCCE----ECTTTTTTCT----------------TCC-EEEC
T ss_pred CCCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCCCC----CChHHhcCCC----------------CCC-EEEC
Confidence 345778888888887654 33 4578899999999988875 2222333333 455 6666
Q ss_pred CCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCcc
Q psy9862 106 RMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIE 183 (378)
Q Consensus 106 ~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~~ 183 (378)
++|.++.++.. |.++++|++|++++|.+.. ..+..|..+++|++|++++|.++.+ |..++.+++|++|++++|.++.
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 66666655444 5666666666666666653 1123345666666666666666543 3345666666666666666665
Q ss_pred CChhhcCCCCCcEEeccCCcCccc--Ccccccccc----cccccccccCCCCceeccCCccccccccccCCcCcceeecc
Q psy9862 184 IPKELGNLTRLRELHIQANRLTVL--PPEIGNLDL----ASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQ 257 (378)
Q Consensus 184 l~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~l~~----l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~ 257 (378)
++ +..+++|+.|++++|.++.+ +..+..+.. +..........++.+++++|.++.. ..+..+++|+.|+++
T Consensus 186 ~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 186 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS 262 (597)
T ss_dssp CC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred cC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECC
Confidence 43 33445555555555554421 111111100 0000011113455688999988875 567889999999999
Q ss_pred cccCCcC-CCCCCCcccccccccccccCCCCcc------CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcC
Q psy9862 258 ANRLTVL-PPEIGNLDLASHKSVLKMDFNPWVT------PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 330 (378)
Q Consensus 258 ~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~~------~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~ 330 (378)
+|.+..+ |..+ ..+++|+.|++++|.+.+ .++.|+.|++++|.++.+|..+..+++|++|++++|.++.+
T Consensus 263 ~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 263 YNELEKIMYHPF---VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp SSCCCEEESGGG---TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCccCCCCHHHh---cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 9999854 4444 445788999999987754 57889999999999999999999999999999999999977
Q ss_pred ChhhccCCCccCcceeeccCCCCCccchHHh
Q psy9862 331 PPEIGNLDLASHKSVLKMDFNPWVTPIADQL 361 (378)
Q Consensus 331 ~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~ 361 (378)
+ +..+++|++|++++|+|.+.++..+
T Consensus 340 ~-----~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 340 K-----LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp C-----CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred C-----hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 5 3344599999999999987765544
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.1e-26 Score=233.04 Aligned_cols=321 Identities=21% Similarity=0.237 Sum_probs=210.1
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC-----------------
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT----------------- 91 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~----------------- 91 (378)
+++.|++++|.+..+. ...+..+++|++|++++|.+.+ ..+..+..+. . ++.++++
T Consensus 249 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~-~-L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQH----LFSHSLHGLF-N-VRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp CCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSE----ECTTTTTTCT-T-CCEEECTTCBCCC------CCEEC
T ss_pred CCCEEECCCCCcCccC-cccccCcccccEeeCCCCccCc----cChhhhcCCC-C-ccEEeccchhhhcccccccccccC
Confidence 4777777777776543 1245677888888888887775 3344444444 3 5555443
Q ss_pred --CCCCCccchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCc-cccc--CccccEEecCCCCCccC-Ccc
Q psy9862 92 --SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPG-NFFM--LETLRALYLGDNDFEVL-PAE 164 (378)
Q Consensus 92 --~~~~~~~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~-~l~~--l~~L~~L~l~~n~l~~l-~~~ 164 (378)
.+..+++++ ++++++|.++.++.. |.++++|++|++++|.+....++. .+.. .++|+.|++++|.++.+ +.+
T Consensus 322 ~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 DFSFQWLKCLE-HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTTTCTTCC-EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred hhhcccCCCCC-EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 223467788 888888888865544 788888888888887653322221 1222 24677777777777643 556
Q ss_pred ccCCCCCcEEecCCCCCc-cCC-hhhcCCCCCcEEeccCCcCcccC-ccccccccccccc---------------ccccC
Q psy9862 165 IGNLKNLQILVLRENDLI-EIP-KELGNLTRLRELHIQANRLTVLP-PEIGNLDLASHKS---------------VLKMD 226 (378)
Q Consensus 165 l~~l~~L~~L~l~~n~~~-~l~-~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~l~~l~---------------~~~~~ 226 (378)
+..+++|++|++++|.+. .++ ..+..+++|++|++++|.++.++ ..+..++.++.+. +..+.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 777788888888888876 344 56777788888888888776432 2333333333222 12334
Q ss_pred CCCceeccCCcccccccc-ccCCcCcceeecccccCCcCCCC------CCCcccccccccccccCCCCc-------cCcc
Q psy9862 227 FNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE------IGNLDLASHKSVLKMDFNPWV-------TPIA 292 (378)
Q Consensus 227 ~~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~------~~~l~~~~~l~~l~l~~~~~~-------~~~~ 292 (378)
.++.+++++|.++.+++. +..+++|++|++++|.+..++.. ...+..+++|+.+++++|.+. +..+
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 456678888888766654 67788888888888877744321 122455677788888877654 2445
Q ss_pred chhhhhccCccccccchh-hcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccch
Q psy9862 293 DQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 293 ~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
+++.|++++|.++.+|.. +..+++|++|++++|++++++..... ..+++++++++++|+|.++++
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH-HHHTTCSEEECTTCCCCBCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc-ccccccCEEEccCCCcccCCc
Confidence 677788888888877765 46778888888888888877765311 023488888888888888775
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.1e-27 Score=224.98 Aligned_cols=302 Identities=22% Similarity=0.320 Sum_probs=180.8
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC-----C---CCCCccc
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT-----S---LPILPFL 99 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~-----~---~~~~~~l 99 (378)
.+++.|++.++.+..+ +.+..+++|++|++++|.+++. ++ +.++. . |+.++++ . +..++++
T Consensus 46 ~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~-~-L~~L~l~~n~l~~~~~~~~l~~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI-----TP-LKNLT-K-LVDILMNNNQIADITPLANLTNL 114 (466)
T ss_dssp HTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC-----GG-GTTCT-T-CCEEECCSSCCCCCGGGTTCTTC
T ss_pred ccccEEecCCCCCccC---cchhhhcCCCEEECCCCccCCc-----hh-hhccc-c-CCEEECCCCccccChhhcCCCCC
Confidence 3566777777766543 3455667777777777766641 11 33333 2 3333322 2 2235666
Q ss_pred hhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCC------------------CcccccCccccEEecCCCCCccC
Q psy9862 100 FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL------------------PGNFFMLETLRALYLGDNDFEVL 161 (378)
Q Consensus 100 ~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~------------------~~~l~~l~~L~~L~l~~n~l~~l 161 (378)
+ ++++++|.++.++. +..+++|++|++++|.+.+... ...+..+++|++|++++|.++.+
T Consensus 115 ~-~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 115 T-GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp C-EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred C-EEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 6 66666666665544 5666666666666665543110 01245567777777777777655
Q ss_pred CccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccCCcCcccCccccccccccccc-----------ccccCCCCc
Q psy9862 162 PAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS-----------VLKMDFNPW 230 (378)
Q Consensus 162 ~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~-----------~~~~~~~~~ 230 (378)
+ .+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++ .+..++.++.+. +..+..++.
T Consensus 193 ~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 193 S-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269 (466)
T ss_dssp G-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred h-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCE
Confidence 3 35667777777777777766543 566677777777777666543 233333333211 112233445
Q ss_pred eeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCcc-----CccchhhhhccCcccc
Q psy9862 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT-----PIADQLQLVLRENDLI 305 (378)
Q Consensus 231 l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~-----~~~~l~~L~l~~n~l~ 305 (378)
+++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.+++++|.+.+ .+++++.|++++|.++
T Consensus 270 L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCccCcccc-ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccC
Confidence 6666666666554 5666777777777776665543 3445667777777776543 3456667777777777
Q ss_pred ccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCc
Q psy9862 306 EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 355 (378)
Q Consensus 306 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 355 (378)
.++ .+..+++|++|++++|+++++++ +. .+++|+++++++|++++
T Consensus 345 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~---~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 DVS-SLANLTNINWLSAGHNQISDLTP-LA---NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCBCGG-GT---TCTTCCEEECCCEEEEC
T ss_pred Cch-hhccCCCCCEEeCCCCccCccch-hh---cCCCCCEEeccCCcccC
Confidence 663 56677777777777777776554 33 33477777777777766
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.6e-26 Score=217.25 Aligned_cols=200 Identities=23% Similarity=0.272 Sum_probs=137.2
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccC-----CCC--CCCCccch
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILH-----VTS--LPILPFLF 100 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~-----l~~--~~~~~~l~ 100 (378)
.+++.|+++++.++++ |.+..+++|++|++++|.+++- + +..++ . |+.++ +.. +..+++++
T Consensus 42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~-~-L~~L~Ls~N~l~~~~~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTL-----D--LSQNT-N-LTYLACDSNKLTNLDVTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSCCSCC-----C--CTTCT-T-CSEEECCSSCCSCCCCTTCTTCC
T ss_pred CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCcCCeE-----c--cccCC-C-CCEEECcCCCCceeecCCCCcCC
Confidence 5689999999998864 5678999999999999998861 1 33333 2 33333 332 23367777
Q ss_pred hccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccCCccccCCCCCcEEecCCC
Q psy9862 101 LQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEIGNLKNLQILVLREN 179 (378)
Q Consensus 101 ~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n 179 (378)
++++++|.++.++ +..+++|++|++++|.+.+. .+..+++|++|++++|. ++.+ .+..+++|++|++++|
T Consensus 110 -~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 -YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp -EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred -EEECCCCcCCeec--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 7888888877764 67777888888888877752 15567777777777773 3344 3566677777777777
Q ss_pred CCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 180 DLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 180 ~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
.++.+| +..+++|+.|++++|.++.++ ++.++ .++.+++++|.++.+| +..+++|+.|++++|
T Consensus 181 ~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~-----------~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 181 KITELD--VSQNKLLNRLNCDTNNITKLD--LNQNI-----------QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCT-----------TCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccceec--cccCCCCCEEECcCCcCCeec--cccCC-----------CCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence 777765 666777777777777776542 33333 3334777777777766 667777888888877
Q ss_pred cCCcCC
Q psy9862 260 RLTVLP 265 (378)
Q Consensus 260 ~l~~~~ 265 (378)
.+..++
T Consensus 244 ~l~~~~ 249 (457)
T 3bz5_A 244 PLTELD 249 (457)
T ss_dssp CCSCCC
T ss_pred cCCCcC
Confidence 777554
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.6e-26 Score=220.02 Aligned_cols=284 Identities=20% Similarity=0.285 Sum_probs=204.2
Q ss_pred cccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CCC---CCCccchhccccCCcccccCCCCCCCCC
Q psy9862 50 MNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TSL---PILPFLFLQFPCRMNRLSSLPRGFGAFP 121 (378)
Q Consensus 50 ~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~~---~~~~~l~~~l~l~~~~l~~~~~~~~~~~ 121 (378)
..+++|+.|+++++.+.. ++ .+..++ . ++.+++ ..+ ..+++++ ++++++|.++.++. +..++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-----l~-~~~~l~-~-L~~L~Ls~n~l~~~~~~~~l~~L~-~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-----ID-GVEYLN-N-LTQINFSNNQLTDITPLKNLTKLV-DILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-----CT-TGGGCT-T-CCEEECCSSCCCCCGGGTTCTTCC-EEECCSSCCCCCGG-GTTCT
T ss_pred hHhccccEEecCCCCCcc-----Cc-chhhhc-C-CCEEECCCCccCCchhhhccccCC-EEECCCCccccChh-hcCCC
Confidence 367899999999998864 22 233333 3 444443 333 3478899 99999999998877 99999
Q ss_pred cccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc--------------------cccCCCCCcEEecCCCCC
Q psy9862 122 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--------------------EIGNLKNLQILVLRENDL 181 (378)
Q Consensus 122 ~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--------------------~l~~l~~L~~L~l~~n~~ 181 (378)
+|++|++++|.+.+. +. +..+++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 113 ~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 113 NLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp TCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC
Confidence 999999999999862 33 8889999999999998765432 245567778888888887
Q ss_pred ccCChhhcCCCCCcEEeccCCcCcccCccccccccccccc-----------ccccCCCCceeccCCccccccccccCCcC
Q psy9862 182 IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS-----------VLKMDFNPWLVLRENDLIEIPKELGNLSR 250 (378)
Q Consensus 182 ~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~-----------~~~~~~~~~l~l~~~~l~~l~~~l~~~~~ 250 (378)
+.++ .+..+++|++|++++|.++.+++ ++.++.++.+. +..+..++.+++++|.+..++. +..+++
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 266 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTK 266 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCC
Confidence 7664 47777888888888887775543 33344433322 2234455667777777776654 667777
Q ss_pred cceeecccccCCcCCCCCCCcccccccccccccCCCCcc-----CccchhhhhccCccccccchhhcCCCCCCEEEeecC
Q psy9862 251 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT-----PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN 325 (378)
Q Consensus 251 L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~-----~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n 325 (378)
|++|++++|.+..++. +..+++|+.+++++|.+.+ .+++++.|++++|.++.++. +..+++|++|++++|
T Consensus 267 L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 267 LTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 7888887777776554 3445777788888776643 45677788888888887765 678888888888888
Q ss_pred CCCcCChhhccCCCccCcceeeccCCCCCccch
Q psy9862 326 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 326 ~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
++++++ .+ ..+++|+++++++|++.+.+|
T Consensus 342 ~l~~~~-~l---~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 342 KVSDVS-SL---ANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCCCCG-GG---TTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCch-hh---ccCCCCCEEeCCCCccCccch
Confidence 888763 33 345589999999999988776
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.7e-26 Score=209.88 Aligned_cols=278 Identities=23% Similarity=0.330 Sum_probs=200.8
Q ss_pred cccccccccccEEEcccccccCchhHHHHhhccccccCCccccC-----CCC---CCCCccchhccccCCcccccCCCCC
Q psy9862 46 LPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILH-----VTS---LPILPFLFLQFPCRMNRLSSLPRGF 117 (378)
Q Consensus 46 ~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~-----l~~---~~~~~~l~~~l~l~~~~l~~~~~~~ 117 (378)
+..+..+++|++|+++++.+.. + +.+..++ . ++.++ +.. +..+++++ ++++++|.++.++ .|
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~-----~-~~~~~~~-~-L~~L~l~~n~i~~~~~~~~l~~L~-~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVAS-----I-QGIEYLT-N-LEYLNLNGNQITDISPLSNLVKLT-NLYIGTNKITDIS-AL 106 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCC-----C-TTGGGCT-T-CCEEECCSSCCCCCGGGTTCTTCC-EEECCSSCCCCCG-GG
T ss_pred cccchhcccccEEEEeCCcccc-----c-hhhhhcC-C-ccEEEccCCccccchhhhcCCcCC-EEEccCCcccCch-HH
Confidence 3456689999999999998875 1 1233333 2 33333 222 23466777 7777777777664 37
Q ss_pred CCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEE
Q psy9862 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLREL 197 (378)
Q Consensus 118 ~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L 197 (378)
..+++|++|++++|.+.+ ++. +..+++|++|++++|........+..+++|++|++++|.+..++. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccC--chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEE
Confidence 777777777777777764 222 667777777777777544334446777777788887777776654 6777778888
Q ss_pred eccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccccccc
Q psy9862 198 HIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHK 277 (378)
Q Consensus 198 ~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l 277 (378)
++++|.++.++. +..++ .++.+++.+|.+..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 183 ~l~~n~l~~~~~-~~~l~-----------~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L 245 (347)
T 4fmz_A 183 SLNYNQIEDISP-LASLT-----------SLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP----LANLSQL 245 (347)
T ss_dssp ECTTSCCCCCGG-GGGCT-----------TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred EccCCccccccc-ccCCC-----------ccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc----hhcCCCC
Confidence 888777765543 33333 33448888888887765 7888999999999999987765 4566888
Q ss_pred ccccccCCCCc-----cCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCC-hhhccCCCccCcceeeccCC
Q psy9862 278 SVLKMDFNPWV-----TPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP-PEIGNLDLASHKSVLKMDFN 351 (378)
Q Consensus 278 ~~l~l~~~~~~-----~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~l~~~~~l~~l~l~~n 351 (378)
+.+++++|.+. ..+++++.|++++|.++.++ ++..+++|++|++++|.+++.+ ..+..+ ++|+++++++|
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGL---TNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTC---TTCSEEECCSS
T ss_pred CEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcc---ccCCEEEccCC
Confidence 99999988764 35678889999999999884 5888999999999999998554 334544 49999999999
Q ss_pred CCCccch
Q psy9862 352 PWVTPIA 358 (378)
Q Consensus 352 ~~~~~~~ 358 (378)
++++..|
T Consensus 322 ~l~~~~~ 328 (347)
T 4fmz_A 322 HITDIRP 328 (347)
T ss_dssp SCCCCGG
T ss_pred ccccccC
Confidence 9988766
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=7.7e-27 Score=222.46 Aligned_cols=296 Identities=25% Similarity=0.295 Sum_probs=143.7
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhcccccc----------------CCccccCCCC
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY----------------NYIPILHVTS 92 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~----------------~~l~~l~l~~ 92 (378)
.+++|+++++.+..++ +++.++++|++|++++|.+.+ .+|+.+..+.. -.+....+.+
T Consensus 12 ~L~~L~l~~n~l~~iP--~~i~~L~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMP--VEAENVKSKTEYYNAWSEWER----NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHH----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cchhhhcccCchhhCC--hhHhcccchhhhhccCCcccc----cCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 4666666666664322 245566666666666666554 33333332210 0022222333
Q ss_pred CCC-CccchhccccCCcccccCCCCCC-----------------CCCcccEEEccCCCCCCCCCCcccccCccccEEecC
Q psy9862 93 LPI-LPFLFLQFPCRMNRLSSLPRGFG-----------------AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 154 (378)
Q Consensus 93 ~~~-~~~l~~~l~l~~~~l~~~~~~~~-----------------~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~ 154 (378)
+|. .++++ ++++++|.++.+|..+. ..++|++|++++|.+.+ +| .+..+++|++|+++
T Consensus 86 lp~~~~~L~-~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 86 LPELPPHLE-SLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp CCSCCTTCS-EEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECC
T ss_pred CCCCcCCCC-EEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECC
Confidence 332 23444 55555555554443210 01355566666665553 33 35556666666666
Q ss_pred CCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceecc
Q psy9862 155 DNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR 234 (378)
Q Consensus 155 ~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~ 234 (378)
+|.++.+|..+ .+|++|++++|.++.+| .+..+++|+.|++++|.++.+|.... .++.++++
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~--------------~L~~L~l~ 223 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPL--------------SLESIVAG 223 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCT--------------TCCEEECC
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcC--------------cccEEECc
Confidence 66665554322 35666666666666655 46666666666666666665443222 22335555
Q ss_pred CCccccccccccCCcCcceeecccccCCcCCCCCCCcc--------------cccccccccccCCCCcc-----------
Q psy9862 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD--------------LASHKSVLKMDFNPWVT----------- 289 (378)
Q Consensus 235 ~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~--------------~~~~l~~l~l~~~~~~~----------- 289 (378)
+|.+..+|. +..+++|++|++++|.+..+|.....+. ..++|+.+++++|.+.+
T Consensus 224 ~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302 (454)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred CCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEE
Confidence 555554442 4455555555555554443332211100 01334445555544433
Q ss_pred -----------Cc-cchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCc--
Q psy9862 290 -----------PI-ADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT-- 355 (378)
Q Consensus 290 -----------~~-~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~-- 355 (378)
.. +.++.|++++|+++.+|.. +++|++|++++|+++++|. .+++|+++++++|++.+
T Consensus 303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp ECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSCC
T ss_pred ECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc------hhhhccEEECCCCCCCcCC
Confidence 11 2455566666666655543 4677788888887777765 23589999999999998
Q ss_pred cchHHhh
Q psy9862 356 PIADQLQ 362 (378)
Q Consensus 356 ~~~~~~~ 362 (378)
.+|..+.
T Consensus 374 ~ip~~l~ 380 (454)
T 1jl5_A 374 DIPESVE 380 (454)
T ss_dssp CCCTTCC
T ss_pred CChHHHH
Confidence 7776653
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.4e-26 Score=212.91 Aligned_cols=275 Identities=19% Similarity=0.200 Sum_probs=217.6
Q ss_pred cccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCC-CCCCCCcccEEEc
Q psy9862 50 MNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR-GFGAFPVLEVLDL 128 (378)
Q Consensus 50 ~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~-~~~~~~~L~~L~l 128 (378)
..++++++|+++++.+. .++..++..+.+++ ++++++|.++.++. .|..+++|++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~--------------------~L~L~~n~i~~~~~~~~~~l~~L~~L~L 100 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE--------------------LLNLNDLQIEEIDTYAFAYAHTIQKLYM 100 (390)
T ss_dssp GGGCCCSEEEEESCEES-EECTHHHHHCCCCS--------------------EEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCCceEEEecCCchh-hCChhHhcccccCc--------------------EEECCCCcccccChhhccCCCCcCEEEC
Confidence 36789999999999887 34444444444444 99999999997765 5999999999999
Q ss_pred cCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCCCccC-ChhhcCCCCCcEEeccCCcCcc
Q psy9862 129 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLRENDLIEI-PKELGNLTRLRELHIQANRLTV 206 (378)
Q Consensus 129 ~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~~~l-~~~l~~l~~L~~L~l~~~~l~~ 206 (378)
++|.+.. ..+..+.++++|++|++++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.
T Consensus 101 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 101 GFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 9999987 3366688999999999999999988876 58899999999999999977 4568999999999999999986
Q ss_pred cCcccccccccccccc--------cccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccc
Q psy9862 207 LPPEIGNLDLASHKSV--------LKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 278 (378)
Q Consensus 207 ~~~~~~~l~~l~~l~~--------~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~ 278 (378)
++ +..++.++.+.. .....++.+++++|.+..++.. ..++|+.|++++|.+...+ .+..+++|+
T Consensus 180 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~----~l~~l~~L~ 251 (390)
T 3o6n_A 180 VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA----WLLNYPGLV 251 (390)
T ss_dssp CC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG----GGGGCTTCS
T ss_pred cc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH----HHcCCCCcc
Confidence 54 233333333221 1223456688888888877653 3578999999999888652 355668889
Q ss_pred cccccCCCCcc-------CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCC
Q psy9862 279 VLKMDFNPWVT-------PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 351 (378)
Q Consensus 279 ~l~l~~~~~~~-------~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n 351 (378)
.+++++|.+.+ ..++++.|++++|.++.++..+..+++|++|++++|+++++|..+..++ +|++|++++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~---~L~~L~L~~N 328 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD---RLENLYLDHN 328 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT---TCSEEECCSS
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccC---cCCEEECCCC
Confidence 99999987653 4567888999999999888877888999999999999998888776655 8999999999
Q ss_pred CCCccc
Q psy9862 352 PWVTPI 357 (378)
Q Consensus 352 ~~~~~~ 357 (378)
++....
T Consensus 329 ~i~~~~ 334 (390)
T 3o6n_A 329 SIVTLK 334 (390)
T ss_dssp CCCCCC
T ss_pred ccceeC
Confidence 987543
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.1e-27 Score=228.14 Aligned_cols=295 Identities=19% Similarity=0.154 Sum_probs=154.0
Q ss_pred CceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCccc
Q psy9862 31 PELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110 (378)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l 110 (378)
+.+|++++.++.++ ..+. ++|++|++++|.+.+ ..+..+.+++ +++ ++++++|.+
T Consensus 3 ~~l~ls~n~l~~ip--~~~~--~~L~~L~Ls~n~i~~----~~~~~~~~l~----------------~L~-~L~Ls~n~l 57 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP--KDLS--QKTTILNISQNYISE----LWTSDILSLS----------------KLR-ILIISHNRI 57 (520)
T ss_dssp CEEECTTSCCSSCC--CSCC--TTCSEEECCSSCCCC----CCHHHHTTCT----------------TCC-EEECCSSCC
T ss_pred ceEecCCCCccccc--cccc--ccccEEECCCCcccc----cChhhccccc----------------ccc-EEecCCCcc
Confidence 47999999998755 3333 899999999999986 3334444444 333 555555555
Q ss_pred ccC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc--CCccccCCCCCcEEecCCCCCccCChh
Q psy9862 111 SSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQILVLRENDLIEIPKE 187 (378)
Q Consensus 111 ~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~~~~l~~~ 187 (378)
+.+ |..|.++++|++|++++|.+.. +|.. .+++|++|++++|.++. +|..++.+++|++|++++|.++. ..
T Consensus 58 ~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~ 131 (520)
T 2z7x_B 58 QYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SS 131 (520)
T ss_dssp CEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GG
T ss_pred CCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hh
Confidence 543 3335555555555555555542 2222 45555555555555542 34455555555555555555443 22
Q ss_pred hcCCCCC--cEEeccCCcC--c-ccCccccc-------------------------------------------------
Q psy9862 188 LGNLTRL--RELHIQANRL--T-VLPPEIGN------------------------------------------------- 213 (378)
Q Consensus 188 l~~l~~L--~~L~l~~~~l--~-~~~~~~~~------------------------------------------------- 213 (378)
+..+++| +.|++++|.+ . ..|..+..
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 3334444 5555555444 1 12222221
Q ss_pred -------ccccccccccc----------------cCCCCceeccCCccc-cccccc-----cCCcCcceeecccccCCcC
Q psy9862 214 -------LDLASHKSVLK----------------MDFNPWLVLRENDLI-EIPKEL-----GNLSRLRELHIQANRLTVL 264 (378)
Q Consensus 214 -------l~~l~~l~~~~----------------~~~~~~l~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~n~l~~~ 264 (378)
+..++.+.... ...++.+++++|.+. .+|..+ ..+++|+.+++++|.+ .+
T Consensus 212 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~ 290 (520)
T 2z7x_B 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF 290 (520)
T ss_dssp HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS
T ss_pred chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec
Confidence 11111111100 124555666666665 556555 5555555555555444 33
Q ss_pred CC-CCCC----------------------cccccccccccccCCCCcc-------CccchhhhhccCccccc---cchhh
Q psy9862 265 PP-EIGN----------------------LDLASHKSVLKMDFNPWVT-------PIADQLQLVLRENDLIE---IPKEL 311 (378)
Q Consensus 265 ~~-~~~~----------------------l~~~~~l~~l~l~~~~~~~-------~~~~l~~L~l~~n~l~~---l~~~l 311 (378)
|. .+.. ...+++|+.+++++|.+.+ ..++++.|++++|.++. +|.++
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 31 0000 0344566666666665543 34456666777776663 34456
Q ss_pred cCCCCCCEEEeecCCCCc-CChhhccCCCccCcceeeccCCCCCccchH
Q psy9862 312 GNLSRLRELHIQANRLTV-LPPEIGNLDLASHKSVLKMDFNPWVTPIAD 359 (378)
Q Consensus 312 ~~~~~L~~L~l~~n~l~~-~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~ 359 (378)
..+++|++|++++|.+++ +|... +..+++|+++++++|.+++.+|.
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGD--CSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCS--CCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhCCCCCEEECCCCcCCcccccch--hccCccCCEEECcCCCCCcchhh
Confidence 666677777777776664 55431 22334555555555555554443
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.9e-27 Score=216.05 Aligned_cols=248 Identities=24% Similarity=0.341 Sum_probs=193.0
Q ss_pred ccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCC-cccc-cCCCCCCCCCcccEEEccC
Q psy9862 53 LYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRM-NRLS-SLPRGFGAFPVLEVLDLTY 130 (378)
Q Consensus 53 ~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~-~~l~-~~~~~~~~~~~L~~L~l~~ 130 (378)
.+++.|++++|.+.+.. .+|+.+.+++ +++ ++++++ |.+. .+|..|..+++|++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~--~~~~~l~~l~----------------~L~-~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~ 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY--PIPSSLANLP----------------YLN-FLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCT----------------TCS-EEEEEEETTEESCCCGGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCCccCCc--ccChhHhCCC----------------CCC-eeeCCCCCcccccCChhHhcCCCCCEEECcC
Confidence 57889999998887510 1233444433 566 888884 7777 6777788899999999999
Q ss_pred CCCCCCCCCcccccCccccEEecCCCCCc-cCCccccCCCCCcEEecCCCCCc-cCChhhcCCC-CCcEEeccCCcCc-c
Q psy9862 131 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLT-RLRELHIQANRLT-V 206 (378)
Q Consensus 131 n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~~-~l~~~l~~l~-~L~~L~l~~~~l~-~ 206 (378)
|.+.+ ..|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.++ .
T Consensus 111 n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 111 TNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 99875 45777888999999999999888 77888888999999999999988 7788888887 8999999999888 6
Q ss_pred cCcccccccccccccccccCCCCceeccCCccc-cccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCC
Q psy9862 207 LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285 (378)
Q Consensus 207 ~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~ 285 (378)
+|..+..+. ++.+++++|.+. ..+..+..+++|+.|++++|.+...++.+
T Consensus 190 ~~~~~~~l~------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------- 240 (313)
T 1ogq_A 190 IPPTFANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----------------- 240 (313)
T ss_dssp CCGGGGGCC------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC-----------------
T ss_pred CChHHhCCc------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcc-----------------
Confidence 666655543 233888888887 45566889999999999999887433322
Q ss_pred CCccCccchhhhhccCcccc-ccchhhcCCCCCCEEEeecCCCC-cCChhhccCCCccCcceeeccCCC-CCcc
Q psy9862 286 PWVTPIADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNP-WVTP 356 (378)
Q Consensus 286 ~~~~~~~~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~l~~~~~l~~l~l~~n~-~~~~ 356 (378)
...++++.|++++|.++ .+|.++..+++|++|++++|+++ .+|.. .. +++++++++++|+ +.|.
T Consensus 241 ---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~---l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 241 ---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN---LQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ---CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT---GGGSCGGGTCSSSEEEST
T ss_pred ---cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc---ccccChHHhcCCCCccCC
Confidence 23356778888888887 78889999999999999999999 66553 44 4599999999999 5554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.8e-26 Score=220.47 Aligned_cols=297 Identities=20% Similarity=0.233 Sum_probs=171.7
Q ss_pred ceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 32 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
.++.++++++.++. -.++|++|++++|.+++ ..+..+.+++ +++ ++++++|.+.
T Consensus 14 ~~~c~~~~l~~lp~-----l~~~l~~L~Ls~n~i~~----~~~~~~~~l~----------------~L~-~L~L~~n~~~ 67 (455)
T 3v47_A 14 NAICINRGLHQVPE-----LPAHVNYVDLSLNSIAE----LNETSFSRLQ----------------DLQ-FLKVEQQTPG 67 (455)
T ss_dssp EEECCSSCCSSCCC-----CCTTCCEEECCSSCCCE----ECTTTTSSCT----------------TCC-EEECCCCSTT
T ss_pred ccCcCCCCcccCCC-----CCCccCEEEecCCccCc----CChhHhccCc----------------ccc-EEECcCCccc
Confidence 57777777766543 22799999999999986 3344555544 333 4445544443
Q ss_pred -cCC-CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-CCcc--ccCCCCCcEEecCCCCCccC-C
Q psy9862 112 -SLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAE--IGNLKNLQILVLRENDLIEI-P 185 (378)
Q Consensus 112 -~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-l~~~--l~~l~~L~~L~l~~n~~~~l-~ 185 (378)
.++ ..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. ++.. +..+++|++|++++|.++.+ |
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred ceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence 222 224445555555555555443 223344445555555555554442 1111 44445555555555555443 2
Q ss_pred hh-hcCCCCCcEEeccCCcCccc-Cccccccc--cccccc---------------------ccccCCCCceeccCCcccc
Q psy9862 186 KE-LGNLTRLRELHIQANRLTVL-PPEIGNLD--LASHKS---------------------VLKMDFNPWLVLRENDLIE 240 (378)
Q Consensus 186 ~~-l~~l~~L~~L~l~~~~l~~~-~~~~~~l~--~l~~l~---------------------~~~~~~~~~l~l~~~~l~~ 240 (378)
.. +..+++|++|++++|.++.. +..+..+. .++.+. ......++.+++++|.+..
T Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 22 44455555555555544422 11222110 000000 0111223346666665541
Q ss_pred -ccccc---------------------------------------cCCcCcceeecccccCCcC-CCCCCCccccccccc
Q psy9862 241 -IPKEL---------------------------------------GNLSRLRELHIQANRLTVL-PPEIGNLDLASHKSV 279 (378)
Q Consensus 241 -l~~~l---------------------------------------~~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~ 279 (378)
.+..+ ...++|+.+++++|.+..+ +..+ ..+++|+.
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~ 303 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQ 303 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCE
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc---ccCCCCCE
Confidence 11111 0235788889988888744 3333 44578899
Q ss_pred ccccCCCCcc-------CccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcC-ChhhccCCCccCcceeeccC
Q psy9862 280 LKMDFNPWVT-------PIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDF 350 (378)
Q Consensus 280 l~l~~~~~~~-------~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~ 350 (378)
+++++|.+.+ ..++++.|++++|.++.+ +..+..+++|++|++++|+++++ |..+.. +++|++|++++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~L~~ 380 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG---LPNLKELALDT 380 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT---CTTCCEEECCS
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc---cccccEEECCC
Confidence 9999987753 456788999999999977 56688999999999999999966 444444 45999999999
Q ss_pred CCCCccchHHh
Q psy9862 351 NPWVTPIADQL 361 (378)
Q Consensus 351 n~~~~~~~~~~ 361 (378)
|.+.+..+..+
T Consensus 381 N~l~~~~~~~~ 391 (455)
T 3v47_A 381 NQLKSVPDGIF 391 (455)
T ss_dssp SCCSCCCTTTT
T ss_pred CccccCCHhHh
Confidence 99987655444
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.7e-27 Score=215.05 Aligned_cols=288 Identities=24% Similarity=0.318 Sum_probs=201.7
Q ss_pred ceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 32 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
.++.+++.++.++ ..+ .++|++|++++|.+++ ..+..+.+ +++++ ++++++|.++
T Consensus 35 ~c~~~~~~l~~iP--~~~--~~~L~~L~l~~n~i~~----~~~~~~~~----------------l~~L~-~L~L~~n~l~ 89 (353)
T 2z80_A 35 ICKGSSGSLNSIP--SGL--TEAVKSLDLSNNRITY----ISNSDLQR----------------CVNLQ-ALVLTSNGIN 89 (353)
T ss_dssp EEECCSTTCSSCC--TTC--CTTCCEEECTTSCCCE----ECTTTTTT----------------CTTCC-EEECTTSCCC
T ss_pred EeeCCCCCccccc--ccc--cccCcEEECCCCcCcc----cCHHHhcc----------------CCCCC-EEECCCCccC
Confidence 3677777776544 222 2588888888888764 11112222 34566 8888888888
Q ss_pred cCCC-CCCCCCcccEEEccCCCCCCCCCCc-ccccCccccEEecCCCCCccCCc--cccCCCCCcEEecCCC-CCccC-C
Q psy9862 112 SLPR-GFGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQILVLREN-DLIEI-P 185 (378)
Q Consensus 112 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~-~l~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n-~~~~l-~ 185 (378)
.++. .|.++++|++|++++|.+.. ++. .+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+ +
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 90 TIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 6644 48888889999999888875 343 37788888999998888887776 5778888999998888 46655 4
Q ss_pred hhhcCCCCCcEEeccCCcCccc-CcccccccccccccccccCCCCceeccCCcccccccc-ccCCcCcceeecccccCCc
Q psy9862 186 KELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTV 263 (378)
Q Consensus 186 ~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~n~l~~ 263 (378)
..+..+++|++|++++|.++.+ |..+..++.++. +++++|.++.++.. +..+++|++|++++|.+..
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~-----------L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH-----------LILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE-----------EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCe-----------ecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 5678888888898888888744 556666555554 77888888777665 3457888899998888875
Q ss_pred CCCC-CCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccC
Q psy9862 264 LPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 342 (378)
Q Consensus 264 ~~~~-~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~ 342 (378)
++.. +........++.++ +..+.++++.+..+|+++..+++|++|++++|+++.+|..+ +..+++
T Consensus 237 ~~~~~l~~~~~~~~l~~l~------------L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~--~~~l~~ 302 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFT------------FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI--FDRLTS 302 (353)
T ss_dssp CCCC------CCCCCCEEE------------EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT--TTTCTT
T ss_pred ccccccccccccchhhccc------------cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH--HhcCCC
Confidence 4422 11111112222222 23344555556678889999999999999999999999875 334459
Q ss_pred cceeeccCCCCCccchHHhhhhhHHHHHHHhhhc
Q psy9862 343 KSVLKMDFNPWVTPIADQLQVGISHVLDYIRSET 376 (378)
Q Consensus 343 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (378)
|+++++++|++.+.+| ...++..|++...
T Consensus 303 L~~L~L~~N~~~~~~~-----~l~~l~~~~~~~~ 331 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP-----RIDYLSRWLNKNS 331 (353)
T ss_dssp CCEEECCSSCBCCCHH-----HHHHHHHHHHHTT
T ss_pred CCEEEeeCCCccCcCC-----CcHHHHHHHHhcc
Confidence 9999999999998775 3455666666543
No 31
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-25 Score=219.45 Aligned_cols=265 Identities=28% Similarity=0.306 Sum_probs=206.3
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
..+++.|+++++.++.++ ..+. ++|++|++++|.++. +|.. +++++ +|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp--~~l~--~~L~~L~L~~N~l~~-----lp~~-------------------l~~L~-~L~Ls 89 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLP--DCLP--AHITTLVIPDNNLTS-----LPAL-------------------PPELR-TLEVS 89 (622)
T ss_dssp HHCCCEEECCSSCCSCCC--SCCC--TTCSEEEECSCCCSC-----CCCC-------------------CTTCC-EEEEC
T ss_pred CCCCcEEEecCCCcCccC--hhhC--CCCcEEEecCCCCCC-----CCCc-------------------CCCCC-EEEcC
Confidence 346899999999998654 2232 899999999998874 3322 33555 88888
Q ss_pred CcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCCh
Q psy9862 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPK 186 (378)
Q Consensus 107 ~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~ 186 (378)
+|.++.+|. .+++|++|++++|.+.. ++. .+++|+.|++++|.++.+|.. +++|++|++++|.++.+|.
T Consensus 90 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 90 GNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp SCCCSCCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred CCcCCcCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 898888876 56888899999998875 343 567888999999988877764 4788899999998887764
Q ss_pred hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCC
Q psy9862 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 266 (378)
Q Consensus 187 ~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 266 (378)
...+|+.|++++|.++.+|.. ++ .++.+++++|.++.+|.. .++|+.|++++|.++.+|.
T Consensus 159 ---~~~~L~~L~L~~N~l~~l~~~---~~-----------~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~ 218 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQLTSLPML---PS-----------GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 218 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCCCC---CT-----------TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC
T ss_pred ---ccCCCCEEECCCCCCCCCccc---CC-----------CCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC
Confidence 346788889998888877622 22 233488888888877753 4678888998888887775
Q ss_pred CCCCcccccccccccccCCCCcc---CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCc
Q psy9862 267 EIGNLDLASHKSVLKMDFNPWVT---PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHK 343 (378)
Q Consensus 267 ~~~~l~~~~~l~~l~l~~~~~~~---~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l 343 (378)
.+ ++|+.+++++|.+.+ .+++++.|++++|.++.+|. .+++|++|++++|+|+.+|..+..++ +|
T Consensus 219 ~~------~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~---~L 286 (622)
T 3g06_A 219 LP------SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLS---SE 286 (622)
T ss_dssp CC------TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSC---TT
T ss_pred CC------CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhcc---cc
Confidence 32 677888888887654 55678899999999999887 67899999999999999988776665 89
Q ss_pred ceeeccCCCCCccchHHhhh
Q psy9862 344 SVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 344 ~~l~l~~n~~~~~~~~~~~~ 363 (378)
+.|++++|++++.+|+.+..
T Consensus 287 ~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CEEECCSCCCCHHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHHh
Confidence 99999999999888886653
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.1e-25 Score=204.11 Aligned_cols=266 Identities=20% Similarity=0.254 Sum_probs=177.5
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCc
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMN 108 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~ 108 (378)
.++.++++++.++.++. .+ .+++++|++++|.+++ ..+..+.+ +++++ ++++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~--~~~l~~L~L~~n~i~~----~~~~~~~~----------------l~~L~-~L~L~~n 86 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DL--PPDTALLDLQNNKITE----IKDGDFKN----------------LKNLH-TLILINN 86 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SC--CTTCCEEECCSSCCCC----BCTTTTTT----------------CTTCC-EEECCSS
T ss_pred CCeEEEecCCCccccCc--cC--CCCCeEEECCCCcCCE----eChhhhcc----------------CCCCC-EEECCCC
Confidence 35667777777665431 12 2577777777777664 11112222 33556 7777777
Q ss_pred ccccC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCCCc---c
Q psy9862 109 RLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLI---E 183 (378)
Q Consensus 109 ~l~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~~---~ 183 (378)
.++.+ |..|..+++|++|++++|.+.. ++..+. ++|++|++++|.++.++. .+..+++|++|++++|.+. .
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 87 KISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred cCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 77765 5557777778888888777763 344332 577778887777775544 4677777888888777775 2
Q ss_pred CChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccc-cccccCCcCcceeecccccCC
Q psy9862 184 IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI-PKELGNLSRLRELHIQANRLT 262 (378)
Q Consensus 184 l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~ 262 (378)
.+..+..+++|+.|++++|.++.+|..+. ..++.+++++|.++.+ +..+..+++|++|++++|.+.
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGLP-------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSCC-------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ChhhccCCCCcCEEECCCCccccCCcccc-------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 35567777778888887777776664332 2233477777777655 345777777777777777776
Q ss_pred cCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhcc-C---C
Q psy9862 263 VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN-L---D 338 (378)
Q Consensus 263 ~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-l---~ 338 (378)
.++... .+..++++.|++++|.++.+|.++..+++|++|++++|+|++++..... . .
T Consensus 230 ~~~~~~-------------------~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 230 AVDNGS-------------------LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp EECTTT-------------------GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred eeChhh-------------------ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 544311 2234567788888898899998888999999999999999987765321 1 1
Q ss_pred CccCcceeeccCCCCCc
Q psy9862 339 LASHKSVLKMDFNPWVT 355 (378)
Q Consensus 339 ~~~~l~~l~l~~n~~~~ 355 (378)
..+.++.+++.+|++..
T Consensus 291 ~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TSCCCSEEECCSSSSCG
T ss_pred ccccccceEeecCcccc
Confidence 24578889999999853
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=233.14 Aligned_cols=250 Identities=23% Similarity=0.256 Sum_probs=149.8
Q ss_pred cchhccccCCcccccC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEe
Q psy9862 98 FLFLQFPCRMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILV 175 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~ 175 (378)
+++ .+++++|.+..+ +..|..+++|++|++++|.+.. ..+..+.++++|++|++++|.++.+ +..+..+++|++|+
T Consensus 267 ~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVR-HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCC-EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred Ccc-EEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 444 555555555543 2336666666666666666654 2344566666677777766666643 44566666677777
Q ss_pred cCCCCCccCC-hhhcCCCCCcEEeccCCcCcccCccccccccccccccc---------ccCCCCceeccCCccccccc--
Q psy9862 176 LRENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL---------KMDFNPWLVLRENDLIEIPK-- 243 (378)
Q Consensus 176 l~~n~~~~l~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~---------~~~~~~~l~l~~~~l~~l~~-- 243 (378)
+++|.+..++ ..+..+++|+.|++++|.++.++. ++.++.+... .......++++.|.+..++.
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 7776666553 346666667777777666654432 1111111100 01223446666666664432
Q ss_pred cccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCc------------cCccchhhhhccCccccccchh-
Q psy9862 244 ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV------------TPIADQLQLVLRENDLIEIPKE- 310 (378)
Q Consensus 244 ~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~------------~~~~~l~~L~l~~n~l~~l~~~- 310 (378)
.+..+++|+.|++++|.+..++... ....+++|+.+++++|.+. +..++++.|++++|.++.++..
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQ-TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSS-SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred hhhcCCccceeeCCCCccccccccc-ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 2457888899999888887554331 1223577788888887653 2456778888888888866554
Q ss_pred hcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccch
Q psy9862 311 LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 311 l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
+..+++|++|++++|+|+++|..... ++|++|++++|.+++.+|
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~----~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP----ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC----SCCCEEEEEEECCCCCCS
T ss_pred ccchhhhheeECCCCCCCccChhhhh----ccccEEECCCCcCCCCCh
Confidence 67788888888888888877654321 345555555555444444
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.1e-25 Score=206.30 Aligned_cols=234 Identities=23% Similarity=0.303 Sum_probs=138.0
Q ss_pred ccccCCcccccCCC-CCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 180 (378)
.+++++|.++.++. .|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++.+|..+. ++|++|++++|.
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence 55555555554433 35555666666666665554 224445555666666666665555554433 556666666666
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcc---cCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeec
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTV---LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHI 256 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~---~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l 256 (378)
++.++. .+..+++|+.|++++|.++. .+..+..+ .++.+++++|.++.+|..+. ++|++|++
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l------------~L~~L~l~~n~l~~l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL------------KLNYLRISEAKLTGIPKDLP--ETLNELHL 200 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC------------CCSCCBCCSSBCSSCCSSSC--SSCSCCBC
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC------------ccCEEECcCCCCCccCcccc--CCCCEEEC
Confidence 655533 35555666666666665542 11111111 12225555555555554432 45666666
Q ss_pred ccccCCcCCCCCCCcccccccccccccCCCCc-------cCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCc
Q psy9862 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWV-------TPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 329 (378)
Q Consensus 257 ~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~-------~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~ 329 (378)
++|.+..++.. .+..+++|+.+++++|.+. +.+++++.|++++|.++.+|.++..+++|++|++++|++++
T Consensus 201 ~~n~i~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 201 DHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CSSCCCCCCTT--SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCcCCccCHH--HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence 66655544321 1233345555555555443 24567788999999999999999999999999999999997
Q ss_pred CChhhc-cC---CCccCcceeeccCCCCC
Q psy9862 330 LPPEIG-NL---DLASHKSVLKMDFNPWV 354 (378)
Q Consensus 330 ~~~~~~-~l---~~~~~l~~l~l~~n~~~ 354 (378)
++.... .. .....++.+++.+|++.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhHccccccccccccccceEeecCccc
Confidence 775432 11 11457899999999986
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.2e-25 Score=223.27 Aligned_cols=335 Identities=18% Similarity=0.211 Sum_probs=220.2
Q ss_pred hhhhhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CCC----
Q psy9862 23 DESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TSL---- 93 (378)
Q Consensus 23 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~~---- 93 (378)
....+..++.|||++|.|+.++. .++.++++|++|+|++|.+++ +. +.++.+++ + |+.+++ ..+
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~-i~---~~~f~~L~-~-L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-IE---DGAYQSLS-H-LSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE-EC---TTTTTTCT-T-CCEEECTTCCCCEECGGG
T ss_pred CCCCCcCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCC-cC---hhHhcCCC-C-CCEEEccCCcCCCCCHHH
Confidence 34455679999999999987652 367899999999999999874 22 23444444 3 555544 333
Q ss_pred -CCCccchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccccCC--
Q psy9862 94 -PILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNL-- 168 (378)
Q Consensus 94 -~~~~~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l-- 168 (378)
..+++|+ +|++++|.++.++.. |+++++|++|++++|.+.....+..+..+++|++|++++|.++.++ ..+..+
T Consensus 120 f~~L~~L~-~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 120 FSGLSSLQ-KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GTTCTTCC-EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hcCCCCCC-EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 3478889 999999999988765 8999999999999999987666777888999999999998775321 111100
Q ss_pred --------------------------------------------------------------------------------
Q psy9862 169 -------------------------------------------------------------------------------- 168 (378)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (378)
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence
Q ss_pred -------------------------------------------------CCCcEEecCCCCCccCC--------------
Q psy9862 169 -------------------------------------------------KNLQILVLRENDLIEIP-------------- 185 (378)
Q Consensus 169 -------------------------------------------------~~L~~L~l~~n~~~~l~-------------- 185 (378)
..++.|++.+|.+..++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence 01112222222211110
Q ss_pred ------hhhcCCCCCcEEeccCCcCcc---cCcc-----------------------ccccccccccc------------
Q psy9862 186 ------KELGNLTRLRELHIQANRLTV---LPPE-----------------------IGNLDLASHKS------------ 221 (378)
Q Consensus 186 ------~~l~~l~~L~~L~l~~~~l~~---~~~~-----------------------~~~l~~l~~l~------------ 221 (378)
.....+++|+.+++++|.+.. .+.. +..+..++.+.
T Consensus 359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc
Confidence 001124566667776665531 1111 11111111110
Q ss_pred --ccccCCCCceeccCCccccc-cccccCCcCcceeecccccCC--cCCCCCCCcccccccccccccCCCCcc-------
Q psy9862 222 --VLKMDFNPWLVLRENDLIEI-PKELGNLSRLRELHIQANRLT--VLPPEIGNLDLASHKSVLKMDFNPWVT------- 289 (378)
Q Consensus 222 --~~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~l~~~~~l~~l~l~~~~~~~------- 289 (378)
+..+..+..++++.|.+... +..+..++.++.|++++|.+. ..|.. +..+++|+.|++++|.+.+
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCCccCCcChHHHc
Confidence 11223334566667766644 344677788888888888643 23433 3445788999999987754
Q ss_pred CccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCChh-hccCCCccCcceeeccCCCCCccchHHhhhhhHH
Q psy9862 290 PIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQVGISH 367 (378)
Q Consensus 290 ~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~-~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~ 367 (378)
..++|++|++++|+++.++. ++..+++|++|++++|+|+++++. +..+. ++|++|++++|+|.++ |...+
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~~L~~L~L~~Np~~C~------C~~~~ 587 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQNDFACT------CEHQS 587 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC--TTCCEEECTTCCBCCS------GGGHH
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh--CcCCEEEeeCCCCccc------CCcHH
Confidence 45678899999999998754 578899999999999999977653 33332 4899999999999654 45778
Q ss_pred HHHHHhhhc
Q psy9862 368 VLDYIRSET 376 (378)
Q Consensus 368 ~~~~~~~~~ 376 (378)
+.+|+++..
T Consensus 588 ~~~wl~~~~ 596 (635)
T 4g8a_A 588 FLQWIKDQR 596 (635)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 888987653
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.4e-25 Score=212.34 Aligned_cols=295 Identities=18% Similarity=0.216 Sum_probs=213.4
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccC-----CCCC--CCCccch
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILH-----VTSL--PILPFLF 100 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~-----l~~~--~~~~~l~ 100 (378)
.+++.|++++|.++++ + +..+++|++|++++|.+++. + +.+++ . |+.++ +..+ ..+++++
T Consensus 64 ~~L~~L~Ls~n~l~~~---~-~~~l~~L~~L~Ls~N~l~~~-----~--~~~l~-~-L~~L~L~~N~l~~l~~~~l~~L~ 130 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL---D-LSQNTNLTYLACDSNKLTNL-----D--VTPLT-K-LTYLNCDTNKLTKLDVSQNPLLT 130 (457)
T ss_dssp TTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCC-----C--CTTCT-T-CCEEECCSSCCSCCCCTTCTTCC
T ss_pred CCCCEEEccCCcCCeE---c-cccCCCCCEEECcCCCCcee-----e--cCCCC-c-CCEEECCCCcCCeecCCCCCcCC
Confidence 5689999999999874 3 77899999999999999862 1 33333 2 44443 3333 3478889
Q ss_pred hccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCC
Q psy9862 101 LQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND 180 (378)
Q Consensus 101 ~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 180 (378)
++++++|.++.++ +..++.|++|++++|...+ .+ .+..+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 131 -~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 131 -YLNCARNTLTEID--VSHNTQLTELDCHLNKKIT-KL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp -EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC-CC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC
T ss_pred -EEECCCCccceec--cccCCcCCEEECCCCCccc-cc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc
Confidence 9999999999874 7888999999999995433 22 3677888999999999888776 6788889999999998
Q ss_pred CccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeeccccc
Q psy9862 181 LIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANR 260 (378)
Q Consensus 181 ~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~ 260 (378)
++.++ +..+++|+.|++++|.++.+| +..++.++ .+++++|.++.++ +..+++|+.+++++|.
T Consensus 203 l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~-----------~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 203 ITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLT-----------YFDCSVNPLTELD--VSTLSKLTTLHCIQTD 265 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCS-----------EEECCSSCCSCCC--CTTCTTCCEEECTTCC
T ss_pred CCeec--cccCCCCCEEECcCCcccccC--ccccCCCC-----------EEEeeCCcCCCcC--HHHCCCCCEEeccCCC
Confidence 88773 778888999999998888765 44444333 3778888877665 3456666666665555
Q ss_pred CCcCCCC----CC--CcccccccccccccCCCCc---------------cCccchhhhhccCccccccchhhcCCCCCCE
Q psy9862 261 LTVLPPE----IG--NLDLASHKSVLKMDFNPWV---------------TPIADQLQLVLRENDLIEIPKELGNLSRLRE 319 (378)
Q Consensus 261 l~~~~~~----~~--~l~~~~~l~~l~l~~~~~~---------------~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~ 319 (378)
+..+.-. .+ .+..+++|+.+++++|... +..++++.|++++|+++.++ +..+++|++
T Consensus 266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~ 343 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKS 343 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSE
T ss_pred CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcE
Confidence 5432211 00 0123466777777777542 23467888999999999874 889999999
Q ss_pred EEeecCCCCcCChhhccCC----------CccCcceeeccCCCCCccchHHhhh
Q psy9862 320 LHIQANRLTVLPPEIGNLD----------LASHKSVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 320 L~l~~n~l~~~~~~~~~l~----------~~~~l~~l~l~~n~~~~~~~~~~~~ 363 (378)
|++++|++++++. +..++ .+..+..+++++|.++|.+|+.+..
T Consensus 344 L~l~~N~l~~l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 344 LSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EECCSSCCCBCTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EECCCCCCCCccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 9999999997643 22221 2246788999999999999987643
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.5e-26 Score=225.51 Aligned_cols=327 Identities=16% Similarity=0.109 Sum_probs=188.6
Q ss_pred hhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCC-----CCC-----CC
Q psy9862 26 KEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV-----TSL-----PI 95 (378)
Q Consensus 26 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l-----~~~-----~~ 95 (378)
.+.++++|++++|.++++.. ..+.++++|++|++++|.+++ ..+..+.+++ . |+.+++ ..+ ..
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~-~-L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIET----IEDKAWHGLH-H-LSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE----ECTTTTTTCT-T-CCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccc----cCHHHhhchh-h-cCEeECCCCcccccChhhcCC
Confidence 44679999999999987542 367799999999999999885 3344444444 2 333332 222 22
Q ss_pred CccchhccccCCcccccCC-CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCC--
Q psy9862 96 LPFLFLQFPCRMNRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNL-- 171 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L-- 171 (378)
+++++ ++++++|.++.++ ..|.++++|++|++++|.+....+|..+.++++|++|++++|.++.+ +..++.+.+|
T Consensus 103 l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLE-NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCC-EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCC-EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 56666 6666666666554 33666666666666666665444555666666666666666666533 3334333333
Q ss_pred --cEEecCCCCCccCChhhcCCCCCcEEeccCCcCc--ccCccccccccccccc--------------------------
Q psy9862 172 --QILVLRENDLIEIPKELGNLTRLRELHIQANRLT--VLPPEIGNLDLASHKS-------------------------- 221 (378)
Q Consensus 172 --~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~l~~l~~l~-------------------------- 221 (378)
.+|++++|.++.++.......+|+.|++++|.++ ..+..+..+..++.+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 3566666666655544433446777777776553 1121222211111100
Q ss_pred -------------------ccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCC---------------
Q psy9862 222 -------------------VLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE--------------- 267 (378)
Q Consensus 222 -------------------~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~--------------- 267 (378)
+..+..++.+++.++.+..++ .+..+++|++|++++|.+..+|..
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSS
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcC
Confidence 122344555677777776666 566777777777777777666521
Q ss_pred --CCCcccccccccccccCCCCcc---------CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhcc
Q psy9862 268 --IGNLDLASHKSVLKMDFNPWVT---------PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 336 (378)
Q Consensus 268 --~~~l~~~~~l~~l~l~~~~~~~---------~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 336 (378)
...+..+++|+.+++++|.+.+ ..++++.|++++|.++.+|..+..+++|++|++++|++++.++. ..
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 419 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-SA 419 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT-TT
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh-hh
Confidence 0011223444555555554322 23455566666666666665666666677777776666644320 11
Q ss_pred CCCccCcceeeccCCCCCccchHHhh
Q psy9862 337 LDLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 337 l~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
+..+++|+++++++|.+.+..|..+.
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred hhccccCCEEECcCCCCCccchhhhc
Confidence 23344777777777777776665543
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.2e-25 Score=205.77 Aligned_cols=266 Identities=18% Similarity=0.293 Sum_probs=197.9
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
...++.|++++|.++.++. ..+.++++|++|++++|.+++ ..|..+..+ ++++ +++++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l----------------~~L~-~L~Ls 108 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISK----ISPGAFAPL----------------VKLE-RLYLS 108 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCC----BCTTTTTTC----------------TTCC-EEECC
T ss_pred CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCe----eCHHHhcCC----------------CCCC-EEECC
Confidence 3578999999999987542 357799999999999999886 234444433 3667 89999
Q ss_pred CcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCc---cCCccccCCCCCcEEecCCCCCcc
Q psy9862 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE---VLPAEIGNLKNLQILVLRENDLIE 183 (378)
Q Consensus 107 ~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~~~~ 183 (378)
+|.++.+|..+. ++|++|++++|.+.. ..+..+.++++|++|++++|.++ ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 999998887654 789999999999886 33455788999999999999886 446678888999999999999998
Q ss_pred CChhhcCCCCCcEEeccCCcCccc-CcccccccccccccccccCCCCceeccCCccccccc-cccCCcCcceeecccccC
Q psy9862 184 IPKELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK-ELGNLSRLRELHIQANRL 261 (378)
Q Consensus 184 l~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l 261 (378)
+|..+. ++|+.|++++|.++.+ +..+..++.++ .+++++|.++.++. .+..+++|++|++++|.+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA-----------KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCC-----------EEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCC-----------EEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 876554 7899999999998855 44555544443 48899999887665 588899999999999999
Q ss_pred CcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh-hc------CCCCCCEEEeecCCCC--cCCh
Q psy9862 262 TVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LG------NLSRLRELHIQANRLT--VLPP 332 (378)
Q Consensus 262 ~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~------~~~~L~~L~l~~n~l~--~~~~ 332 (378)
..+|..+..+ +.++.|++++|.++.++.. +. ..+.++.|++++|.+. .+++
T Consensus 253 ~~lp~~l~~l--------------------~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 253 VKVPGGLADH--------------------KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp SSCCTTTTTC--------------------SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred ccCChhhccC--------------------CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 9887764333 3445566666666655432 21 2467999999999887 3443
Q ss_pred hhccCCCccCcceeeccCCC
Q psy9862 333 EIGNLDLASHKSVLKMDFNP 352 (378)
Q Consensus 333 ~~~~l~~~~~l~~l~l~~n~ 352 (378)
. .+..+.+++.+++++|.
T Consensus 313 ~--~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 S--TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp G--GGTTCCCGGGEEC----
T ss_pred c--ccccccceeEEEecccC
Confidence 2 34555699999999884
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.8e-26 Score=225.70 Aligned_cols=309 Identities=16% Similarity=0.182 Sum_probs=215.4
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCC
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRM 107 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~ 107 (378)
..++.|++++|.++.+. ...+.++++|++|++++|.+++ ..+..+.++ ++++ ++++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l----------------~~L~-~L~Ls~ 83 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINT----IEGDAFYSL----------------GSLE-HLDLSD 83 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCE----ECTTTTTTC----------------TTCC-EEECTT
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCc----cChhhcccc----------------ccCC-EEECCC
Confidence 57999999999998753 2467799999999999999876 223334433 3677 999999
Q ss_pred cccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccCC-ccccCCCCCcEEecCCCCCcc-
Q psy9862 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLP-AEIGNLKNLQILVLRENDLIE- 183 (378)
Q Consensus 108 ~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l~-~~l~~l~~L~~L~l~~n~~~~- 183 (378)
|.++.++.. |.++++|++|++++|.+.....+..+..+++|++|++++|. ++.++ ..+..+++|++|++++|.++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999988776 99999999999999999865556778999999999999998 56665 468899999999999999985
Q ss_pred CChhhcC------------------------CCCCcEEeccCCcCcccC---ccc-ccccc-------------------
Q psy9862 184 IPKELGN------------------------LTRLRELHIQANRLTVLP---PEI-GNLDL------------------- 216 (378)
Q Consensus 184 l~~~l~~------------------------l~~L~~L~l~~~~l~~~~---~~~-~~l~~------------------- 216 (378)
.|..+.. +++|++|++++|.++.++ ..+ ..+..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 4555544 456666666666665321 000 00000
Q ss_pred ---------------------------------------cccccc------------------cccCCCCceeccCCccc
Q psy9862 217 ---------------------------------------ASHKSV------------------LKMDFNPWLVLRENDLI 239 (378)
Q Consensus 217 ---------------------------------------l~~l~~------------------~~~~~~~~l~l~~~~l~ 239 (378)
++.+.. .....++.+++++|.+.
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 000000 00123455666667777
Q ss_pred cccccc-cCCcCcceeecccccCCc-CCCCCCCcccccccccccccCCCCc---------cCccchhhhhccCccccccc
Q psy9862 240 EIPKEL-GNLSRLRELHIQANRLTV-LPPEIGNLDLASHKSVLKMDFNPWV---------TPIADQLQLVLRENDLIEIP 308 (378)
Q Consensus 240 ~l~~~l-~~~~~L~~L~l~~n~l~~-~~~~~~~l~~~~~l~~l~l~~~~~~---------~~~~~l~~L~l~~n~l~~l~ 308 (378)
.+|..+ ..+++|++|++++|.+.. +|.....+..+++|+.+++++|.+. +..++++.|++++|+++.+|
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence 677665 467888888888888773 3322222344577888888888773 34567778888888888888
Q ss_pred hhhcCCCCCCEEEeecCCCCcCChhhc-c--------------CCCccCcceeeccCCCCCccchH
Q psy9862 309 KELGNLSRLRELHIQANRLTVLPPEIG-N--------------LDLASHKSVLKMDFNPWVTPIAD 359 (378)
Q Consensus 309 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-~--------------l~~~~~l~~l~l~~n~~~~~~~~ 359 (378)
..+..+++|++|++++|.++.+|..+. . ...+++|++|++++|.++ .+|+
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence 777778888888888888776654321 0 013557777777777776 4443
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=215.45 Aligned_cols=288 Identities=23% Similarity=0.263 Sum_probs=226.4
Q ss_pred ceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 32 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
.++.++..++.++. .+ .++++.|++++|.+++ ..+..+.+ +++++ +|++++|.++
T Consensus 15 ~v~c~~~~l~~ip~--~~--~~~l~~L~L~~n~l~~----~~~~~~~~----------------l~~L~-~L~L~~n~i~ 69 (477)
T 2id5_A 15 AVLCHRKRFVAVPE--GI--PTETRLLDLGKNRIKT----LNQDEFAS----------------FPHLE-ELELNENIVS 69 (477)
T ss_dssp EEECCSCCCSSCCS--CC--CTTCSEEECCSSCCCE----ECTTTTTT----------------CTTCC-EEECTTSCCC
T ss_pred EEEeCCCCcCcCCC--CC--CCCCcEEECCCCccce----ECHhHccC----------------CCCCC-EEECCCCccC
Confidence 57777777776542 22 3689999999999875 22233333 44677 9999999999
Q ss_pred cC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCccC-Chhh
Q psy9862 112 SL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIEI-PKEL 188 (378)
Q Consensus 112 ~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~~l-~~~l 188 (378)
.+ |..|.++++|++|++++|.+... .+..|.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+
T Consensus 70 ~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 70 AVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred EeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 76 56699999999999999999862 245578999999999999999854 66788999999999999999876 5578
Q ss_pred cCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccCCccccccc-cccCCcCcceeecccccCC-cCC
Q psy9862 189 GNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK-ELGNLSRLRELHIQANRLT-VLP 265 (378)
Q Consensus 189 ~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~-~~~ 265 (378)
..+++|+.|++++|.++.++. .+..+..++ .+++.+|.+..++. .+..+++|++|++++|... .++
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-----------~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-----------VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCC-----------EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCc-----------EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 999999999999999987764 344444443 48899999987665 5889999999999998654 565
Q ss_pred CCCCCcccccccccccccCCCCcc-------CccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCChhhccC
Q psy9862 266 PEIGNLDLASHKSVLKMDFNPWVT-------PIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNL 337 (378)
Q Consensus 266 ~~~~~l~~~~~l~~l~l~~~~~~~-------~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~l 337 (378)
...... .+|+.+++++|.+.+ .+++++.|++++|.++.++. .+..+++|++|++++|+++++++. .+
T Consensus 218 ~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~ 292 (477)
T 2id5_A 218 PNCLYG---LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--AF 292 (477)
T ss_dssp TTTTTT---CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT--TB
T ss_pred cccccC---ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH--Hh
Confidence 554333 478899999987653 45678899999999997765 478899999999999999966443 24
Q ss_pred CCccCcceeeccCCCCCccchHHh
Q psy9862 338 DLASHKSVLKMDFNPWVTPIADQL 361 (378)
Q Consensus 338 ~~~~~l~~l~l~~n~~~~~~~~~~ 361 (378)
..+++|++|++++|.+++..+..+
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cCcccCCEEECCCCcCceeCHhHc
Confidence 455699999999999987665543
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.3e-25 Score=220.20 Aligned_cols=310 Identities=18% Similarity=0.197 Sum_probs=205.5
Q ss_pred CCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC----------CCCCCccc
Q psy9862 30 NPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT----------SLPILPFL 99 (378)
Q Consensus 30 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~----------~~~~~~~l 99 (378)
.+.++++++.++.++ ..+. ++|++|++++|.+++ ..+..+.+++ . |+.++++ .+..++++
T Consensus 33 ~~~l~ls~~~L~~ip--~~~~--~~L~~L~Ls~N~i~~----~~~~~~~~l~-~-L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 33 ESMVDYSNRNLTHVP--KDLP--PRTKALSLSQNSISE----LRMPDISFLS-E-LRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp CCEEECTTSCCCSCC--TTSC--TTCCEEECCSSCCCC----CCGGGTTTCT-T-CCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CcEEEcCCCCCccCC--CCCC--CCcCEEECCCCCccc----cChhhhccCC-C-ccEEECCCCCCCcCCHHHhCCCCCC
Confidence 478999999998755 2232 899999999999986 3334555544 3 4444332 22336677
Q ss_pred hhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCC--cEEecC
Q psy9862 100 FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL--QILVLR 177 (378)
Q Consensus 100 ~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L--~~L~l~ 177 (378)
+ ++++++|.++.+|.. .+++|++|++++|.+.....+..+.++++|++|++++|.++.. .+..++++ ++|+++
T Consensus 103 ~-~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 103 E-YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLD 177 (562)
T ss_dssp C-EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEE
T ss_pred C-EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEee
Confidence 7 777777777777665 6777777777777776544456677777777777777776532 23344444 777777
Q ss_pred CCCC--cc-CChhhcCC---------------------------------------------------------------
Q psy9862 178 ENDL--IE-IPKELGNL--------------------------------------------------------------- 191 (378)
Q Consensus 178 ~n~~--~~-l~~~l~~l--------------------------------------------------------------- 191 (378)
+|.+ +. .|..+..+
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 7766 31 12222221
Q ss_pred ------------------CCCcEEeccCCcCc-ccCccc-----cccccccccc--------------------------
Q psy9862 192 ------------------TRLRELHIQANRLT-VLPPEI-----GNLDLASHKS-------------------------- 221 (378)
Q Consensus 192 ------------------~~L~~L~l~~~~l~-~~~~~~-----~~l~~l~~l~-------------------------- 221 (378)
.+|++|++++|.++ .+|..+ ..++.+....
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 14555555555555 455433 2222111100
Q ss_pred -----------ccccCCCCceeccCCcccc-ccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCcc
Q psy9862 222 -----------VLKMDFNPWLVLRENDLIE-IPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289 (378)
Q Consensus 222 -----------~~~~~~~~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~ 289 (378)
...+..++.+++++|.++. +|..+..+++|++|++++|.++.++.....+..+++|+.+++++|.+.+
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 0344566778888888875 5667888888999999998888665433334556788888888887754
Q ss_pred --------CccchhhhhccCcccc-ccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHH
Q psy9862 290 --------PIADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 290 --------~~~~l~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~ 360 (378)
..++++.|++++|.++ .++..+. ++|++|++++|+++.+|..+..+ ++|+++++++|.+++ +|+.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l---~~L~~L~L~~N~l~~-l~~~ 491 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL---QALQELNVASNQLKS-VPDG 491 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSS---CCCSEEECCSSCCCC-CCTT
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCC---CCCCEEECCCCCCCC-CCHH
Confidence 3456788999999886 3333332 68999999999999999887655 499999999999984 5544
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.1e-25 Score=222.45 Aligned_cols=310 Identities=18% Similarity=0.146 Sum_probs=169.2
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
+.+++.|++++|.++.++ ...+.++++|++|++++|.+++ ..+..+.+++ +++ +++++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~----------------~L~-~L~L~ 81 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISK----LEPELCQKLP----------------MLK-VLNLQ 81 (680)
T ss_dssp CTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCT----------------TCC-EEECC
T ss_pred CCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCc----cCHHHHhccc----------------CcC-EEECC
Confidence 467999999999998754 1357799999999999999886 3333343333 233 44444
Q ss_pred CcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCccC
Q psy9862 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIEI 184 (378)
Q Consensus 107 ~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~~l 184 (378)
+|.++.+|.. |.++++|++|++++|.+.. ..+..+.++++|++|++++|.++.+ +..++.+++|++|++++|.++.+
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 4444444432 4444444444444444433 1123344444444444444444422 22334444444444444444433
Q ss_pred Chh-h--cCCCCCcEEeccCCcCcccC-ccccccccccccc---------------------------------------
Q psy9862 185 PKE-L--GNLTRLRELHIQANRLTVLP-PEIGNLDLASHKS--------------------------------------- 221 (378)
Q Consensus 185 ~~~-l--~~l~~L~~L~l~~~~l~~~~-~~~~~l~~l~~l~--------------------------------------- 221 (378)
+.. + ..+++|+.|++++|.++.++ ..+..+..++.+.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 221 1 12344444444444444221 1122221111110
Q ss_pred -cccc--CCCCceeccCCcccccc-ccccCCcCcceeecccccCCcC-CCCCCCcccccccccccccCCCC---------
Q psy9862 222 -VLKM--DFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPW--------- 287 (378)
Q Consensus 222 -~~~~--~~~~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~--------- 287 (378)
+..+ ..++.+++++|.+..++ ..+..+++|++|++++|.+..+ +..+.. +++|+.++++.+..
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT---CTTCCEEECTTCBCCC------C
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC---CCCccEEeccchhhhcccccccc
Confidence 0011 12445777777776554 4467777777777777777633 333333 35566666654421
Q ss_pred -------ccCccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCC--cCChhhccCCCccCcceeeccCCCCCccc
Q psy9862 288 -------VTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLT--VLPPEIGNLDLASHKSVLKMDFNPWVTPI 357 (378)
Q Consensus 288 -------~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~--~~~~~~~~l~~~~~l~~l~l~~n~~~~~~ 357 (378)
.+.+++++.|++++|.++.++. ++..+++|++|++++|.++ .++......-..+.++++++++|.+.+..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 2345667778888888876543 4677888888888888644 33332211111247888899999888777
Q ss_pred hHHhh
Q psy9862 358 ADQLQ 362 (378)
Q Consensus 358 ~~~~~ 362 (378)
|..+.
T Consensus 398 ~~~~~ 402 (680)
T 1ziw_A 398 SDAFS 402 (680)
T ss_dssp TTTTT
T ss_pred hhhhh
Confidence 66553
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-25 Score=219.11 Aligned_cols=274 Identities=19% Similarity=0.200 Sum_probs=216.4
Q ss_pred ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCC-CCCCCCcccEEEcc
Q psy9862 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR-GFGAFPVLEVLDLT 129 (378)
Q Consensus 51 ~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~ 129 (378)
.+++++.+++++|.+. .++..++..+.+ ++ .|++++|.++.++. .|..+++|++|+++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~-------------------L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 107 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQ-------------------VE-LLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCC-------------------CS-EEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCC-------------------Cc-EEECCCCCCCCCChHHhcCCCCCCEEECC
Confidence 5789999999999887 344444444444 44 99999999997765 59999999999999
Q ss_pred CCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCCCccCC-hhhcCCCCCcEEeccCCcCccc
Q psy9862 130 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVL 207 (378)
Q Consensus 130 ~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~~~l~-~~l~~l~~L~~L~l~~~~l~~~ 207 (378)
+|.+.+ ..+..+.++++|++|++++|.++.+|.. ++.+++|++|++++|.++.++ ..+..+++|+.|++++|.++.+
T Consensus 108 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 108 FNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 999987 3456688999999999999999988776 589999999999999999774 4689999999999999999866
Q ss_pred Ccccccccccccccc--------cccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccccccccc
Q psy9862 208 PPEIGNLDLASHKSV--------LKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279 (378)
Q Consensus 208 ~~~~~~l~~l~~l~~--------~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~ 279 (378)
+ +..++.+..+.. .....+..+++++|.+..++..+ .++|+.|++++|.+... ..+..+++|+.
T Consensus 187 ~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~----~~l~~l~~L~~ 258 (597)
T 3oja_B 187 D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT----AWLLNYPGLVE 258 (597)
T ss_dssp C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC----GGGGGCTTCSE
T ss_pred C--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC----hhhccCCCCCE
Confidence 4 233333333221 12234556788888887766543 36899999999988754 33556688899
Q ss_pred ccccCCCCcc-------CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCC
Q psy9862 280 LKMDFNPWVT-------PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 352 (378)
Q Consensus 280 l~l~~~~~~~-------~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~ 352 (378)
|++++|.+.+ .+++|+.|++++|.++.+|..+..+++|++|++++|.++.+|..+..++ +|++|++++|.
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~---~L~~L~L~~N~ 335 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD---RLENLYLDHNS 335 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT---TCSEEECCSSC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCC---CCCEEECCCCC
Confidence 9999988754 4566888999999999888878888999999999999999888776665 89999999999
Q ss_pred CCccc
Q psy9862 353 WVTPI 357 (378)
Q Consensus 353 ~~~~~ 357 (378)
+.+..
T Consensus 336 l~~~~ 340 (597)
T 3oja_B 336 IVTLK 340 (597)
T ss_dssp CCCCC
T ss_pred CCCcC
Confidence 87654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.8e-25 Score=203.50 Aligned_cols=277 Identities=19% Similarity=0.282 Sum_probs=195.7
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCc
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMN 108 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~ 108 (378)
.++.++++++.++.++ ..+ .++|++|++++|.+.+ ..+..+.+ +++++ ++++++|
T Consensus 34 ~l~~l~~~~~~l~~ip--~~~--~~~l~~L~l~~n~i~~----~~~~~~~~----------------l~~L~-~L~L~~n 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP--KEI--SPDTTLLDLQNNDISE----LRKDDFKG----------------LQHLY-ALVLVNN 88 (332)
T ss_dssp ETTEEECCSSCCSSCC--SCC--CTTCCEEECCSSCCCE----ECTTTTTT----------------CTTCC-EEECCSS
T ss_pred cCCEEECCCCCccccC--CCC--CCCCeEEECCCCcCCc----cCHhHhhC----------------CCCCc-EEECCCC
Confidence 3778888888887644 222 3688999999988774 11223333 33566 8888888
Q ss_pred ccccC-CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCCCcc---
Q psy9862 109 RLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLIE--- 183 (378)
Q Consensus 109 ~l~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~~~--- 183 (378)
.++.+ |..|..+++|++|++++|.+.. ++..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred ccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 88865 4558888888888888888874 444433 688888888888887665 47788888888888888863
Q ss_pred CChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCcccccc-ccccCCcCcceeecccccCC
Q psy9862 184 IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP-KELGNLSRLRELHIQANRLT 262 (378)
Q Consensus 184 l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~ 262 (378)
.+..+..+ +|+.|++++|.++.+|..+. ..++.+++++|.+..++ ..+..+++|+.|++++|.+.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPKDLP-------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCSSSC-------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CcccccCC-ccCEEECcCCCCCccCcccc-------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 35556666 88888888888887765432 12334778888887665 45778888888888888888
Q ss_pred cCCCCCCCcccccccccccccCCCCcc------CccchhhhhccCccccccchh-hcC------CCCCCEEEeecCCCC-
Q psy9862 263 VLPPEIGNLDLASHKSVLKMDFNPWVT------PIADQLQLVLRENDLIEIPKE-LGN------LSRLRELHIQANRLT- 328 (378)
Q Consensus 263 ~~~~~~~~l~~~~~l~~l~l~~~~~~~------~~~~l~~L~l~~n~l~~l~~~-l~~------~~~L~~L~l~~n~l~- 328 (378)
.++.. .+..+++|+.+++++|.+.. ..+.++.|++++|.++.++.. +.. ...|+.|++++|.+.
T Consensus 231 ~~~~~--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 231 MIENG--SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCCTT--GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred cCChh--HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 66542 23445778888888876642 455678899999999977643 322 467999999999988
Q ss_pred -cCChhhccCCCccCcceeeccCCC
Q psy9862 329 -VLPPEIGNLDLASHKSVLKMDFNP 352 (378)
Q Consensus 329 -~~~~~~~~l~~~~~l~~l~l~~n~ 352 (378)
.+++. .+..+++++.+++++|.
T Consensus 309 ~~~~~~--~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPA--TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGG--GGTTBCCSTTEEC----
T ss_pred cccCcc--cccccchhhhhhccccc
Confidence 55543 35556699999999885
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=7.4e-25 Score=224.50 Aligned_cols=296 Identities=19% Similarity=0.231 Sum_probs=191.5
Q ss_pred hhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHH-HhhccccccCCccccCCC----------CCC
Q psy9862 26 KEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQV-IKGLSNSKYNYIPILHVT----------SLP 94 (378)
Q Consensus 26 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~-~~~l~~l~~~~l~~l~l~----------~~~ 94 (378)
.+.+++.|++++|.++.+. ...+.++++|++|++++|...+ .+ +.++.+++ + |+.++++ .+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~-~-L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLP-N-LRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCT-T-CCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCC-C-CCEEECCCCcCcccCHhHcc
Confidence 4567999999999998753 2567899999999999996655 33 34455554 3 4444332 222
Q ss_pred CCccchhccccCCccccc-CCCC--CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-CCccccCC--
Q psy9862 95 ILPFLFLQFPCRMNRLSS-LPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNL-- 168 (378)
Q Consensus 95 ~~~~l~~~l~l~~~~l~~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l-- 168 (378)
.+++|+ +|++++|.++. ++.. |..+++|++|++++|.+.+...+..+..+++|++|++++|.++. .+..+..+
T Consensus 95 ~l~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLF-ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCC-CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccC-EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 366677 77777777763 3333 66777777777777777654333456777777777777777663 34445544
Q ss_pred CCCcEEecCCCCCcc-CChhhcCCCC------CcEEeccCCcCc-ccCccccccc---cccccc----------------
Q psy9862 169 KNLQILVLRENDLIE-IPKELGNLTR------LRELHIQANRLT-VLPPEIGNLD---LASHKS---------------- 221 (378)
Q Consensus 169 ~~L~~L~l~~n~~~~-l~~~l~~l~~------L~~L~l~~~~l~-~~~~~~~~l~---~l~~l~---------------- 221 (378)
++|++|++++|.+.. .|..+..+.+ |+.|++++|.++ ..+..+.... .+..+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 667777777776663 3434443333 788888888665 3333222210 011000
Q ss_pred ------c--cccCCCCceeccCCccccc-cccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCcc---
Q psy9862 222 ------V--LKMDFNPWLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT--- 289 (378)
Q Consensus 222 ------~--~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~--- 289 (378)
+ .....++.+++++|.+..+ +..+..+++|+.|++++|.+..+++. .+..+++|+.+++++|.+.+
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccCH
Confidence 0 0123456688888888755 34577888888888888888855332 23444678888888876543
Q ss_pred ----CccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCC
Q psy9862 290 ----PIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 290 ----~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
..++++.|++++|.++.++. .+..+++|++|++++|.+++++
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 45577888888888887654 4677888888888888887654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=8.1e-25 Score=198.07 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=177.7
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCC-CCcccccCccccEEecCCCCCccCCccccCCCCCcEEe
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQS-LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILV 175 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~-~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 175 (378)
+++ .+++++|.++.+|.. |.++++|++|++++|.+.... .+..+.++++|++|++++|.++.++..+..+++|++|+
T Consensus 29 ~l~-~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SAT-RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCC-EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCC-EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 455 888888888888776 788889999999998886421 13445678889999999998888887788888999999
Q ss_pred cCCCCCccCCh--hhcCCCCCcEEeccCCcCccc-CcccccccccccccccccCCCCceeccCCcccc--ccccccCCcC
Q psy9862 176 LRENDLIEIPK--ELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIE--IPKELGNLSR 250 (378)
Q Consensus 176 l~~n~~~~l~~--~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~--l~~~l~~~~~ 250 (378)
+++|.++.++. .+..+++|++|++++|.++.. +..+..++.++ .+++++|.+.. +|..+..+++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-----------VLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-----------EEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-----------EEECCCCccccccchhHHhhCcC
Confidence 99998887753 678888999999998888743 33344444333 38888888764 6777888888
Q ss_pred cceeecccccCCcCCC-CCCCcccccccccccccCCCCccCccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCC
Q psy9862 251 LRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLT 328 (378)
Q Consensus 251 L~~L~l~~n~l~~~~~-~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~ 328 (378)
|++|++++|.+..+++ .+ +..++++.|++++|.++.++. .+..+++|++|++++|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~--------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAF--------------------NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CCEEECTTSCCCEECTTTT--------------------TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCCcCCcCHHHh--------------------cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 8888888888875532 22 233566778888888887655 5788999999999999999
Q ss_pred cCC-hhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 329 VLP-PEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 329 ~~~-~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
+.+ ..+..++ ++++++++++|++.+.+ ...++.+|++..
T Consensus 237 ~~~~~~~~~~~--~~L~~L~L~~N~~~~~c------~~~~~~~~l~~~ 276 (306)
T 2z66_A 237 TSKKQELQHFP--SSLAFLNLTQNDFACTC------EHQSFLQWIKDQ 276 (306)
T ss_dssp BCSSSSCCCCC--TTCCEEECTTCCEECSG------GGHHHHHHHHHT
T ss_pred ccCHHHHHhhh--ccCCEEEccCCCeeccc------ChHHHHHHHHhh
Confidence 544 3444432 38999999999997654 345566676643
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=4.2e-24 Score=203.25 Aligned_cols=248 Identities=24% Similarity=0.368 Sum_probs=151.1
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~ 180 (378)
.+++.+..++.+|..+. +++++|++++|.+... .+..|.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 44555555555555433 4555666666665542 2344555556666666666555433 345555566666666666
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccC-Cccccccc-cccCCcCcceeec
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRE-NDLIEIPK-ELGNLSRLRELHI 256 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~-~~l~~l~~-~l~~~~~L~~L~l 256 (378)
++.++. .+..+++|++|++++|.++.++. .+..++.++ .+++.+ +.+..++. .+..+++|++|++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-----------~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-----------RLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-----------EEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-----------EeCCCCCCCcceeCcchhhcccccCeecC
Confidence 555543 35555666666666665554433 222232222 244544 23344433 3555666666666
Q ss_pred ccccCCcCCCCCCCcccccccccccccCCCCc-------cCccchhhhhccCccccccc-hhhcCCCCCCEEEeecCCCC
Q psy9862 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWV-------TPIADQLQLVLRENDLIEIP-KELGNLSRLRELHIQANRLT 328 (378)
Q Consensus 257 ~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~-------~~~~~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~l~ 328 (378)
++|.++.+|. +..+++|+.|++++|.+. ...++++.|++++|.++.++ .++..+++|++|++++|+++
T Consensus 193 ~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 193 AMCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp TTSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCcCccccc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 6666665542 344455666666666543 24567788999999998664 46888999999999999999
Q ss_pred cCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 329 VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 329 ~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
.++... +..+++|+++++++|+|.+ .+...++..|++..
T Consensus 269 ~~~~~~--~~~l~~L~~L~L~~Np~~C------dC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 269 LLPHDL--FTPLHHLERIHLHHNPWNC------NCDILWLSWWIKDM 307 (440)
T ss_dssp CCCTTT--TSSCTTCCEEECCSSCEEC------SSTTHHHHHHHHTT
T ss_pred ccChhH--hccccCCCEEEcCCCCccC------CCCchHHHHHHHhc
Confidence 888754 4555699999999999954 44567778888754
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=7.3e-25 Score=200.23 Aligned_cols=220 Identities=23% Similarity=0.356 Sum_probs=169.8
Q ss_pred cchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecC
Q psy9862 98 FLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~ 177 (378)
.++ .+++++|.++.+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+|..++.+++|++|+++
T Consensus 82 ~l~-~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRV-ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCC-EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cee-EEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 445 888888888888888888889999999998887 46777888888999999998888888888888899999998
Q ss_pred CCCCc-cCChhhcC---------CCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccC
Q psy9862 178 ENDLI-EIPKELGN---------LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGN 247 (378)
Q Consensus 178 ~n~~~-~l~~~l~~---------l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~ 247 (378)
+|.+. .+|..+.. +++|+.|++++|.++.+|..+..++.++. +++++|.+..+|..+..
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~-----------L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS-----------LKIRNSPLSALGPAIHH 227 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCE-----------EEEESSCCCCCCGGGGG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCE-----------EEccCCCCCcCchhhcc
Confidence 86544 56665543 88888888888888877776666555444 78888888888777888
Q ss_pred CcCcceeecccccCC-cCCCCCCCcccccccccccccCCCCccCccchhhhhccCccc-cccchhhcCCCCCCEEEeecC
Q psy9862 248 LSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDL-IEIPKELGNLSRLRELHIQAN 325 (378)
Q Consensus 248 ~~~L~~L~l~~n~l~-~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l-~~l~~~l~~~~~L~~L~l~~n 325 (378)
+++|++|++++|.+. .+|..+.. +++++.|++++|.+ +.+|.++..+++|++|++++|
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~--------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGG--------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTC--------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCCCEEECcCCcchhhhHHHhcC--------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 888888888887765 55544332 34566677777554 377878888999999999998
Q ss_pred CCC-cCChhhccCCCccCcceeeccCCCCC
Q psy9862 326 RLT-VLPPEIGNLDLASHKSVLKMDFNPWV 354 (378)
Q Consensus 326 ~l~-~~~~~~~~l~~~~~l~~l~l~~n~~~ 354 (378)
++. .+|..++.++ +++.+++..+.+.
T Consensus 288 ~~~~~iP~~l~~L~---~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 288 VNLSRLPSLIAQLP---ANCIILVPPHLQA 314 (328)
T ss_dssp TTCCCCCGGGGGSC---TTCEEECCGGGSC
T ss_pred CchhhccHHHhhcc---CceEEeCCHHHHH
Confidence 665 8888887776 7888888766653
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.6e-24 Score=197.91 Aligned_cols=230 Identities=21% Similarity=0.251 Sum_probs=134.8
Q ss_pred hhhhccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 24 ESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 24 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
.....+++.|+++++.+..++ +.+.++++|++|++++|.++. +|..+.++. +++ ++
T Consensus 77 ~~~~~~l~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~----------------~L~-~L 132 (328)
T 4fcg_A 77 DATQPGRVALELRSVPLPQFP--DQAFRLSHLQHMTIDAAGLME-----LPDTMQQFA----------------GLE-TL 132 (328)
T ss_dssp HHTSTTCCEEEEESSCCSSCC--SCGGGGTTCSEEEEESSCCCC-----CCSCGGGGT----------------TCS-EE
T ss_pred cccccceeEEEccCCCchhcC--hhhhhCCCCCEEECCCCCccc-----hhHHHhccC----------------CCC-EE
Confidence 333455666666666666433 345566666666666666552 333333322 344 56
Q ss_pred ccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccc---------cCccccEEecCCCCCccCCccccCCCCCcEE
Q psy9862 104 PCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF---------MLETLRALYLGDNDFEVLPAEIGNLKNLQIL 174 (378)
Q Consensus 104 ~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~---------~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 174 (378)
++++|.++.+|..|..+++|++|++++|.+.+ .+|..+. ++++|++|++++|.++.+|..++.+++|++|
T Consensus 133 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 133 TLARNPLRALPASIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211 (328)
T ss_dssp EEESCCCCCCCGGGGGCTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE
T ss_pred ECCCCccccCcHHHhcCcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEE
Confidence 66666666665556666666666666655443 3333332 2555555555555555555555555555555
Q ss_pred ecCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCccee
Q psy9862 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLREL 254 (378)
Q Consensus 175 ~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L 254 (378)
++++|.++.+|..+..+++|+.|++++|.+. +.+|..+..+++|++|
T Consensus 212 ~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~---------------------------------~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTAL---------------------------------RNYPPIFGGRAPLKRL 258 (328)
T ss_dssp EEESSCCCCCCGGGGGCTTCCEEECTTCTTC---------------------------------CBCCCCTTCCCCCCEE
T ss_pred EccCCCCCcCchhhccCCCCCEEECcCCcch---------------------------------hhhHHHhcCCCCCCEE
Confidence 5555555555555555555555555554443 2344556778888888
Q ss_pred ecccccCC-cCCCCCCCcccccccccccccCCCCccCccchhhhhccCccc-cccchhhcCCCCCCEEEeecCCCCcCC
Q psy9862 255 HIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDL-IEIPKELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 255 ~l~~n~l~-~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l-~~l~~~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
++++|.+. .+|..+.. +++++.|++++|.+ +.+|+++..+++|+.+++..+.+..++
T Consensus 259 ~L~~n~~~~~~p~~~~~--------------------l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHR--------------------LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp ECTTCTTCCBCCTTGGG--------------------CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred ECCCCCchhhcchhhhc--------------------CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 88887665 55554332 24555666666554 378888999999999999987666443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.7e-24 Score=203.03 Aligned_cols=247 Identities=24% Similarity=0.348 Sum_probs=153.6
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~ 180 (378)
.+++.+..++.+|..+. +++++|++++|.+.. ..+..|..+++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 44555555555555432 456666666666654 22444556666666666666665432 445556666666666666
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccC-Cccccccc-cccCCcCcceeec
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRE-NDLIEIPK-ELGNLSRLRELHI 256 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~-~~l~~l~~-~l~~~~~L~~L~l 256 (378)
++.++. .+..+++|++|++++|.++.++. .+..++.++ .+++++ +.++.++. .+..+++|++|++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-----------~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-----------RLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-----------EEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-----------EEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 665543 25556666666666666654443 223333222 255554 33444443 3556666666666
Q ss_pred ccccCCcCCCCCCCcccccccccccccCCCCcc-------CccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCC
Q psy9862 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT-------PIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLT 328 (378)
Q Consensus 257 ~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~-------~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~ 328 (378)
++|.+..+|. +..+++|+.|++++|.+.+ ..++++.|++++|.++.+ +.++..+++|++|++++|+|+
T Consensus 204 ~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 204 GMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp TTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccccc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 6666665542 3444566666666665532 456778899999999866 556889999999999999999
Q ss_pred cCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 329 VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 329 ~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
+++... +..+++|+++++++|+|.+++ ...++..|++.
T Consensus 280 ~~~~~~--~~~l~~L~~L~L~~Np~~CdC------~~~~l~~~l~~ 317 (452)
T 3zyi_A 280 SLPHDL--FTPLRYLVELHLHHNPWNCDC------DILWLAWWLRE 317 (452)
T ss_dssp CCCTTS--STTCTTCCEEECCSSCEECST------TTHHHHHHHHH
T ss_pred ccChHH--hccccCCCEEEccCCCcCCCC------CchHHHHHHHH
Confidence 888754 445569999999999996554 45666677665
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=212.43 Aligned_cols=316 Identities=17% Similarity=0.137 Sum_probs=197.7
Q ss_pred CceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCC----------CCCCCccch
Q psy9862 31 PELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT----------SLPILPFLF 100 (378)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~----------~~~~~~~l~ 100 (378)
+.++-++.+++.++. .+ .+++++|++++|.+++ ..+..+..++ . |+.++++ .+..+++++
T Consensus 10 ~~~~c~~~~l~~ip~--~l--~~~l~~L~Ls~n~l~~----~~~~~~~~l~-~-L~~L~Ls~n~i~~i~~~~~~~l~~L~ 79 (570)
T 2z63_A 10 ITYQCMELNFYKIPD--NL--PFSTKNLDLSFNPLRH----LGSYSFFSFP-E-LQVLDLSRCEIQTIEDGAYQSLSHLS 79 (570)
T ss_dssp TEEECCSSCCSSCCS--SS--CSSCCEEECCSCCCCE----ECTTTTTTCS-S-CCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cEEEeCCCCccccCC--Cc--cccccEEEccCCccCc----cChhHhhCCC-C-ceEEECCCCcCCccCcccccCchhCC
Confidence 345666666665442 12 2589999999999885 2233444444 3 4444332 123367777
Q ss_pred hccccCCcccccCC-CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc--CCccccCCCCCcEEecC
Q psy9862 101 LQFPCRMNRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQILVLR 177 (378)
Q Consensus 101 ~~l~l~~~~l~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~ 177 (378)
++++++|.++.++ ..|.++++|++|++++|.+.... +..+.++++|++|++++|.++. +|..++.+++|++|+++
T Consensus 80 -~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 80 -TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp -EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred -EEeCcCCcCCccCHhhhcCccccccccccccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 7788888777655 34777778888888887776522 2246777778888888877763 57777777788888888
Q ss_pred CCCCccC-ChhhcCCCCC----cEEeccCCcCcccCcccccccccccc--------------------------------
Q psy9862 178 ENDLIEI-PKELGNLTRL----RELHIQANRLTVLPPEIGNLDLASHK-------------------------------- 220 (378)
Q Consensus 178 ~n~~~~l-~~~l~~l~~L----~~L~l~~~~l~~~~~~~~~l~~l~~l-------------------------------- 220 (378)
+|.++.+ +..+..+.+| ..+++++|.++.+++.......++.+
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 8877755 3445555555 67777777666433221111011111
Q ss_pred ---------------------------------------cccccCCCCceeccCCccccccccccCCcCcceeecccccC
Q psy9862 221 ---------------------------------------SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRL 261 (378)
Q Consensus 221 ---------------------------------------~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l 261 (378)
.+..+..++.+++.+|.+..+|..+..+ +|++|++++|.+
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc
Confidence 0112345566778888887787777777 888888888877
Q ss_pred CcCCCCCCCc-------------------ccccccccccccCCCCcc---------CccchhhhhccCccccccchhhcC
Q psy9862 262 TVLPPEIGNL-------------------DLASHKSVLKMDFNPWVT---------PIADQLQLVLRENDLIEIPKELGN 313 (378)
Q Consensus 262 ~~~~~~~~~l-------------------~~~~~l~~l~l~~~~~~~---------~~~~l~~L~l~~n~l~~l~~~l~~ 313 (378)
..+|.. .+ ..+++|+.+++++|.+.+ ..++++.|++++|.++.++..+..
T Consensus 317 ~~l~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 317 GQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp SSCCBC--BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred cccCcc--cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc
Confidence 766542 11 234556666666665542 245666777777777766666677
Q ss_pred CCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhh
Q psy9862 314 LSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 314 ~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
+++|++|++++|.+++.+.. ..+..+++|+++++++|.+.+..|..+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp CTTCCEEECTTSEEESCTTS-CTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cCCCCEEEccCCccccccch-hhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 77777777777777754321 1133445888888888888777665553
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.7e-25 Score=201.80 Aligned_cols=226 Identities=23% Similarity=0.344 Sum_probs=184.5
Q ss_pred cchhccccCCcccc---cCCCCCCCCCcccEEEccC-CCCCCCCCCcccccCccccEEecCCCCCc-cCCccccCCCCCc
Q psy9862 98 FLFLQFPCRMNRLS---SLPRGFGAFPVLEVLDLTY-NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQ 172 (378)
Q Consensus 98 ~l~~~l~l~~~~l~---~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~ 172 (378)
.++ .++++++.++ .+|..|..+++|++|++++ |.+.+ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 51 ~l~-~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVN-NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEE-EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEE-EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 455 8889999888 4788899999999999995 88876 56788899999999999999998 7888899999999
Q ss_pred EEecCCCCCc-cCChhhcCCCCCcEEeccCCcCc-ccCccccccc-ccccccccccCCCCceeccCCccc-cccccccCC
Q psy9862 173 ILVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VLPPEIGNLD-LASHKSVLKMDFNPWLVLRENDLI-EIPKELGNL 248 (378)
Q Consensus 173 ~L~l~~n~~~-~l~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~l~-~l~~l~~~~~~~~~~l~l~~~~l~-~l~~~l~~~ 248 (378)
+|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+. .++ .+++++|.+. .+|..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-----------~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-----------SMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC-----------EEECCSSEEEEECCGGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc-----------EEECcCCeeeccCChHHhCC
Confidence 9999999998 67888999999999999999998 7777666554 333 3888888887 667777777
Q ss_pred cCcceeecccccCCcC-CCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCC
Q psy9862 249 SRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRL 327 (378)
Q Consensus 249 ~~L~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l 327 (378)
+ |++|++++|.+... +..+ +..++++.|++++|.++..+..+..+++|++|++++|++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~--------------------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLF--------------------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGC--------------------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred c-ccEEECcCCcccCcCCHHH--------------------hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence 6 89999988888733 3222 234566677788888876555678889999999999999
Q ss_pred C-cCChhhccCCCccCcceeeccCCCCCccchHH
Q psy9862 328 T-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 328 ~-~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~ 360 (378)
+ .+|..+..++ +|++|++++|+++|.+|+.
T Consensus 257 ~~~~p~~l~~l~---~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 257 YGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCCGGGGGCT---TCCEEECCSSEEEEECCCS
T ss_pred cCcCChHHhcCc---CCCEEECcCCcccccCCCC
Confidence 9 7777776665 9999999999999999875
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=5.5e-24 Score=190.62 Aligned_cols=232 Identities=25% Similarity=0.411 Sum_probs=170.7
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+ .+++++|++++|.+.. ..+..+..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 5777888888887654 4688888888888876 2245677888888888888888755 6677888888888888887
Q ss_pred -CccC-ChhhcCCCCCcEEeccCCcCcccC-cccccccccccccccccCCCCceeccCCcccccccc-ccCCcCcceeec
Q psy9862 181 -LIEI-PKELGNLTRLRELHIQANRLTVLP-PEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHI 256 (378)
Q Consensus 181 -~~~l-~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l 256 (378)
+..+ +..+..+++|++|++++|.++.++ ..+..++.++ .+++++|.++.++.. +..+++|++|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-----------YLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-----------EEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC-----------EEECCCCcccccCHhHhccCCCccEEEC
Confidence 7766 566888888888888888887553 3344444333 377888888776654 778888999999
Q ss_pred ccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCChh-h
Q psy9862 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPE-I 334 (378)
Q Consensus 257 ~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~-~ 334 (378)
++|.++.++... ....++++.|++++|.++.+ |.++..+++|++|++++|++++++.. +
T Consensus 161 ~~n~l~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 161 HGNRISSVPERA-------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp CSSCCCEECTTT-------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred CCCcccccCHHH-------------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence 888888665431 12335566777778877755 66788889999999999999988764 4
Q ss_pred ccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 335 GNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 335 ~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
..+ ++|+++++++|++.+.+ ...++.+|++..
T Consensus 222 ~~l---~~L~~L~l~~N~~~c~~------~~~~~~~~l~~~ 253 (285)
T 1ozn_A 222 APL---RALQYLRLNDNPWVCDC------RARPLWAWLQKF 253 (285)
T ss_dssp TTC---TTCCEEECCSSCEECSG------GGHHHHHHHHHC
T ss_pred ccC---cccCEEeccCCCccCCC------CcHHHHHHHHhc
Confidence 444 58999999999986654 334556666653
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.1e-26 Score=222.25 Aligned_cols=324 Identities=21% Similarity=0.192 Sum_probs=189.5
Q ss_pred ccCCceeeccCCcccCc--Ccc-cccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCC------------
Q psy9862 28 IKNPELELADKGLSSFE--ELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTS------------ 92 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~--~~~-~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~------------ 92 (378)
.+++.|++++|.++... .++ .+..+++|++|++++|.+.+.++..+...+.... ..++.++++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-CKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT-CCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC-CceeEEEccCCCCCHHHHHHHH
Confidence 45889999999887421 223 3457889999999999888766666666555322 1133333321
Q ss_pred --CCCCccchhccccCCccccc-----CCCC-CCCCCcccEEEccCCCCCCCC---CCcccccCccccEEecCCCCCcc-
Q psy9862 93 --LPILPFLFLQFPCRMNRLSS-----LPRG-FGAFPVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDNDFEV- 160 (378)
Q Consensus 93 --~~~~~~l~~~l~l~~~~l~~-----~~~~-~~~~~~L~~L~l~~n~i~~~~---~~~~l~~l~~L~~L~l~~n~l~~- 160 (378)
+..+++++ ++++++|.++. +... +...++|++|++++|.+.+.. ++..+..+++|++|++++|.++.
T Consensus 107 ~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQ-ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCC-EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCcee-EEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 22355666 66666666652 1111 222345666677666665421 12234455667777777776552
Q ss_pred ----CCcccc-CCCCCcEEecCCCCCcc-----CChhhcCCCCCcEEeccCCcCcccC-cccccccccccccccccCCCC
Q psy9862 161 ----LPAEIG-NLKNLQILVLRENDLIE-----IPKELGNLTRLRELHIQANRLTVLP-PEIGNLDLASHKSVLKMDFNP 229 (378)
Q Consensus 161 ----l~~~l~-~l~~L~~L~l~~n~~~~-----l~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~l~~l~~l~~~~~~~~~ 229 (378)
+...+. ..++|++|++++|.++. ++..+..+++|++|++++|.++... ..+.. ........++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~------~~~~~~~~L~ 259 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP------GLLHPSSRLR 259 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------HHTSTTCCCC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH------HHhcCCCCce
Confidence 111111 24467777777776664 3455566677777777777665211 00000 0000123445
Q ss_pred ceeccCCcccc-----ccccccCCcCcceeecccccCCcCC-CCCCC-c-ccccccccccccCCCCccC-----------
Q psy9862 230 WLVLRENDLIE-----IPKELGNLSRLRELHIQANRLTVLP-PEIGN-L-DLASHKSVLKMDFNPWVTP----------- 290 (378)
Q Consensus 230 ~l~l~~~~l~~-----l~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~-l-~~~~~l~~l~l~~~~~~~~----------- 290 (378)
.+++++|.++. ++..+..+++|++|++++|.+.... ..+.. + ...++|+.+++++|.+.+.
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 58888888874 6667777888888888888775211 11111 1 1124777888888876542
Q ss_pred ccchhhhhccCcccccc-c----hhhcC-CCCCCEEEeecCCCC-----cCChhhccCCCccCcceeeccCCCCCccchH
Q psy9862 291 IADQLQLVLRENDLIEI-P----KELGN-LSRLRELHIQANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWVTPIAD 359 (378)
Q Consensus 291 ~~~l~~L~l~~n~l~~l-~----~~l~~-~~~L~~L~l~~n~l~-----~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~ 359 (378)
.+.++.|++++|.++.. + ..+.. +++|++|++++|+++ .++..+..+ ++|+++++++|++++....
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN---HSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC---CCCCEEECCSSSCCHHHHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC---CCccEEECCCCCCCHHHHH
Confidence 36677888888887633 2 22322 568888888888887 344444444 4888888888888766544
Q ss_pred Hhh
Q psy9862 360 QLQ 362 (378)
Q Consensus 360 ~~~ 362 (378)
.+.
T Consensus 417 ~l~ 419 (461)
T 1z7x_W 417 QLV 419 (461)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=188.89 Aligned_cols=214 Identities=28% Similarity=0.393 Sum_probs=157.1
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEe
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILV 175 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 175 (378)
+++++ ++++.++.++.+|..+. +++++|++++|.+.. ..+..+..+++|++|++++|.++.++.. +.+++|++|+
T Consensus 9 l~~l~-~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHL-EVNCDKRNLTALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCC-EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCcc-EEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 45666 77888888887776653 678888888888775 2245677788888888888887765443 5677788888
Q ss_pred cCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceee
Q psy9862 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255 (378)
Q Consensus 176 l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~ 255 (378)
+++|.++.+|..+..+++|++|++++|.++.+++ ..+..+++|++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---------------------------------~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------------------------------GALRGLGELQELY 130 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------------------------------STTTTCTTCCEEE
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCH---------------------------------HHHcCCCCCCEEE
Confidence 8888887777777777778888877777765542 2356677788888
Q ss_pred cccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh-hcCCCCCCEEEeecCCCCcCChhh
Q psy9862 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI 334 (378)
Q Consensus 256 l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~ 334 (378)
+++|.+..++... ....++++.|++++|+++.+|.. +..+++|++|++++|+++.+|..+
T Consensus 131 L~~N~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 131 LKGNELKTLPPGL-------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp CTTSCCCCCCTTT-------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCccChhh-------------------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 8888777665432 12334566677777777777654 567899999999999999999887
Q ss_pred ccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 335 GNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 335 ~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
.... .++.+++.+|+|.+. ++..++.+|++++
T Consensus 192 ~~~~---~L~~l~L~~Np~~C~------c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 192 FGSH---LLPFAFLHGNPWLCN------CEILYFRRWLQDN 223 (290)
T ss_dssp TTTC---CCSEEECCSCCBCCS------GGGHHHHHHHHHT
T ss_pred cccc---cCCeEEeCCCCccCc------CccHHHHHHHHhC
Confidence 6655 899999999999654 4566778888764
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.3e-24 Score=196.66 Aligned_cols=230 Identities=20% Similarity=0.219 Sum_probs=130.7
Q ss_pred ccccCCcccccC---CCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc--cccCCCCCcEEec
Q psy9862 102 QFPCRMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQILVL 176 (378)
Q Consensus 102 ~l~l~~~~l~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l 176 (378)
++++++|.++.+ +..+..+++|++|++++|.+.. ++..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 56 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp EEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence 555555555432 2334445566666666665552 34445556666666666665554432 4555566666666
Q ss_pred CCCCCccC-ChhhcCCCCCcEEeccCCcCcc--cCcccccccccccccccccCCCCceeccCCccccc-cccccCCcCcc
Q psy9862 177 RENDLIEI-PKELGNLTRLRELHIQANRLTV--LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI-PKELGNLSRLR 252 (378)
Q Consensus 177 ~~n~~~~l-~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~ 252 (378)
++|.+... +..+..+++|++|++++|.++. +|..+..++.++. +++++|.++.+ +..+..+++|+
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-----------L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-----------LDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE-----------EECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE-----------EECCCCCcCCcCHHHhcCCCCCC
Confidence 66665533 3445556666666666665542 3444433333322 56666666544 34567778888
Q ss_pred eeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccc-cchhhcCC-CCCCEEEeecCCCCcC
Q psy9862 253 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIE-IPKELGNL-SRLRELHIQANRLTVL 330 (378)
Q Consensus 253 ~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~-l~~~l~~~-~~L~~L~l~~n~l~~~ 330 (378)
+|++++|.+..++... .+..++++.|++++|.++. .+..+..+ ++|++|++++|.++..
T Consensus 203 ~L~L~~N~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFP-------------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCSBCCSGG-------------------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred EEECCCCccCccChhh-------------------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888877655421 1223455566667676664 34456666 4899999999988743
Q ss_pred ChhhccCCCccCcceeeccCCCCCccchHHhhh
Q psy9862 331 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 331 ~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~ 363 (378)
.....-...+...+.+.+..+.+.+..|+.+.+
T Consensus 264 c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 264 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp GGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 221100112224455566677777777777654
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.2e-25 Score=200.50 Aligned_cols=245 Identities=16% Similarity=0.159 Sum_probs=157.9
Q ss_pred ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc--cCCCCCC-------CCC
Q psy9862 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS--SLPRGFG-------AFP 121 (378)
Q Consensus 51 ~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~--~~~~~~~-------~~~ 121 (378)
..++|++|++++|.+ .++..++..+. .+++++|.++ .++..+. .++
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~-----------------------~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 95 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIK-----------------------SLSLKRLTVRAARIPSRILFGALRVLGIS 95 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHH-----------------------HCCCCEEEEEEEECBHHHHHHHHHHHTTS
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHh-----------------------hcccccccccCCCcCHHHHHHHHHhcCcC
Confidence 566777777777776 44444544322 4555555554 2333222 466
Q ss_pred cccEEEccCCCCCCCCCCccc--ccCccccEEecCCCCCccCCccccCC-----CCCcEEecCCCCCccCC-hhhcCCCC
Q psy9862 122 VLEVLDLTYNNLNEQSLPGNF--FMLETLRALYLGDNDFEVLPAEIGNL-----KNLQILVLRENDLIEIP-KELGNLTR 193 (378)
Q Consensus 122 ~L~~L~l~~n~i~~~~~~~~l--~~l~~L~~L~l~~n~l~~l~~~l~~l-----~~L~~L~l~~n~~~~l~-~~l~~l~~ 193 (378)
+|++|++++|.+.+ ..+..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.++.++ ..+..+++
T Consensus 96 ~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTG-TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBS-CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccc-hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 77777777777664 334443 56677777777777776555555554 67777777777776654 55667777
Q ss_pred CcEEeccCCcCcc---cCccc--ccccccccccccccCCCCceeccCCccccc---ccc-ccCCcCcceeecccccCCcC
Q psy9862 194 LRELHIQANRLTV---LPPEI--GNLDLASHKSVLKMDFNPWLVLRENDLIEI---PKE-LGNLSRLRELHIQANRLTVL 264 (378)
Q Consensus 194 L~~L~l~~~~l~~---~~~~~--~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l---~~~-l~~~~~L~~L~l~~n~l~~~ 264 (378)
|++|++++|.+.. ++..+ ..+ ..++.+++++|.++.+ +.. +..+++|++|++++|.+...
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKF-----------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSC-----------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCEEECCCCCcCcchHHHHHHHhccC-----------CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 7777777776542 12211 222 2233366667766633 222 45778999999999988854
Q ss_pred CCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcc
Q psy9862 265 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 344 (378)
Q Consensus 265 ~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~ 344 (378)
++. .. ....++++.|++++|.++++|..+. ++|++|++++|+|+++|. +..+ ++|+
T Consensus 244 ~~~-~~-----------------~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l---~~L~ 299 (312)
T 1wwl_A 244 AGA-PS-----------------CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL---PQVG 299 (312)
T ss_dssp CCC-SC-----------------CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS---CEEE
T ss_pred cch-hh-----------------hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC---CCCC
Confidence 421 00 1123567788888888888888776 899999999999998876 5444 5999
Q ss_pred eeeccCCCCCcc
Q psy9862 345 VLKMDFNPWVTP 356 (378)
Q Consensus 345 ~l~l~~n~~~~~ 356 (378)
++++++|++++.
T Consensus 300 ~L~L~~N~l~~~ 311 (312)
T 1wwl_A 300 NLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTCTTTCC
T ss_pred EEeccCCCCCCC
Confidence 999999999764
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=6.7e-24 Score=193.00 Aligned_cols=218 Identities=20% Similarity=0.222 Sum_probs=111.4
Q ss_pred ccccCCcccccCCC-CCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 180 (378)
++++++|.++.++. .|..+++|++|++++|.+.+ .+. +..+++|++|++++|.++.++ ..++|++|++++|.
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN 110 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCc
Confidence 44444444443332 24444444445554444432 111 444444455555444443322 12444455555544
Q ss_pred CccCChhhcCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccCCcccccc-ccc-cCCcCcceeecc
Q psy9862 181 LIEIPKELGNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP-KEL-GNLSRLRELHIQ 257 (378)
Q Consensus 181 ~~~l~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~-~~l-~~~~~L~~L~l~ 257 (378)
++.++. ..+++|++|++++|.++.+++ .+..+..++. +++++|.+..++ ..+ ..+++|++|+++
T Consensus 111 l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-----------L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 111 ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY-----------LDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE-----------EECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCE-----------EECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 443321 123444555555554443322 2222222221 444444444332 222 356677777777
Q ss_pred cccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccC
Q psy9862 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337 (378)
Q Consensus 258 ~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l 337 (378)
+|.+..++... ..++++.|++++|.++.++..+..+++|++|++++|+++.+|..+..+
T Consensus 178 ~N~l~~~~~~~---------------------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 178 YNFIYDVKGQV---------------------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp TSCCCEEECCC---------------------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred CCcCccccccc---------------------ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 77766443211 234566677777777777766777778888888888887777655444
Q ss_pred CCccCcceeeccCCCCCccchHHhhh
Q psy9862 338 DLASHKSVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 338 ~~~~~l~~l~l~~n~~~~~~~~~~~~ 363 (378)
++|+++++++|++.+..++.+..
T Consensus 237 ---~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 237 ---QNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp ---TTCCEEECTTCCCBHHHHHHHHH
T ss_pred ---CCCCEEEccCCCccCcCHHHHHh
Confidence 47788888888877444444433
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.3e-23 Score=183.94 Aligned_cols=236 Identities=22% Similarity=0.343 Sum_probs=166.8
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 180 (378)
.++..+..+..+|..+. +++++|++++|.+... .+..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 34555666667776553 5788888888888752 24467778888888888888875544 57778888888888888
Q ss_pred CccCC-hhhcCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCceeccCCcccc--ccccccCCcCcceeec
Q psy9862 181 LIEIP-KELGNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLVLRENDLIE--IPKELGNLSRLRELHI 256 (378)
Q Consensus 181 ~~~l~-~~l~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~--l~~~l~~~~~L~~L~l 256 (378)
++.++ ..+..+++|++|++++|.++.++. .+..++. ++.+++++|.+.. +|..+..+++|++|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-----------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT-----------CCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCC-----------CCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 87664 567888888888888888775544 3333333 3337777777765 5677888899999999
Q ss_pred ccccCCcCCC-CCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhc
Q psy9862 257 QANRLTVLPP-EIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 335 (378)
Q Consensus 257 ~~n~l~~~~~-~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 335 (378)
++|.+..++. .+..+ ..++.+.+ .|++++|.++.++.......+|++|++++|+++++|..+
T Consensus 157 s~N~l~~~~~~~~~~l---~~L~~l~l-------------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 219 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVL---HQMPLLNL-------------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI- 219 (276)
T ss_dssp CSSCCCEECGGGGHHH---HTCTTCCE-------------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT-
T ss_pred CCCCCCcCCHHHhhhh---hhccccce-------------eeecCCCcccccCccccCCCcccEEECCCCceeecCHhH-
Confidence 9998886553 22222 11111110 578888888888776666668999999999999888754
Q ss_pred cCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 336 NLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 336 ~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
+..+++|+++++++|++.+.++ ...++..|++.
T Consensus 220 -~~~l~~L~~L~l~~N~~~c~c~-----~l~~l~~~~~~ 252 (276)
T 2z62_A 220 -FDRLTSLQKIWLHTNPWDCSCP-----RIDYLSRWLNK 252 (276)
T ss_dssp -TTTCCSCCEEECCSSCBCCCTT-----TTHHHHHHHHH
T ss_pred -hcccccccEEEccCCcccccCC-----chHHHHHHHHh
Confidence 4455699999999999987763 24455566554
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.7e-23 Score=200.64 Aligned_cols=241 Identities=27% Similarity=0.269 Sum_probs=186.6
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCC
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRM 107 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~ 107 (378)
.+++.|++++|.++.++ . .+++|++|++++|.+++ +|.. +++++ +|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp---~--~l~~L~~L~Ls~N~l~~-----lp~~-------------------l~~L~-~L~Ls~ 110 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP---A--LPPELRTLEVSGNQLTS-----LPVL-------------------PPGLL-ELSIFS 110 (622)
T ss_dssp TTCSEEEECSCCCSCCC---C--CCTTCCEEEECSCCCSC-----CCCC-------------------CTTCC-EEEECS
T ss_pred CCCcEEEecCCCCCCCC---C--cCCCCCEEEcCCCcCCc-----CCCC-------------------CCCCC-EEECcC
Confidence 57999999999998654 3 67999999999999874 3332 33555 888888
Q ss_pred cccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChh
Q psy9862 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE 187 (378)
Q Consensus 108 ~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~ 187 (378)
|.++.+|. .+++|++|++++|.+.. ++.. +++|++|++++|.++.+|. .+.+|+.|++++|.++.+|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 88888776 56788889999988875 3442 4788899999988887764 3467888899999888887
Q ss_pred hcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCC
Q psy9862 188 LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267 (378)
Q Consensus 188 l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 267 (378)
..+++|+.|++++|.++.+|..+. .++.+++.+|.++.+|.. +++|+.|++++|.++.+|.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~~~--------------~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp~- 238 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTLPS--------------ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV- 238 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCCCT--------------TCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCC-
T ss_pred -ccCCCCcEEECCCCCCCCCCCccc--------------hhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCCC-
Confidence 456788899999988887765332 223377888888877753 4778888888888887772
Q ss_pred CCCcccccccccccccCCCCcc---CccchhhhhccCccccccchhhcCCCCCCEEEeecCCCC-cCChhhc
Q psy9862 268 IGNLDLASHKSVLKMDFNPWVT---PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT-VLPPEIG 335 (378)
Q Consensus 268 ~~~l~~~~~l~~l~l~~~~~~~---~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~ 335 (378)
.+++|+.+++++|.+.. .+++++.|++++|.++.+|..+..+++|+.|++++|.++ ..|..+.
T Consensus 239 -----~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 239 -----LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred -----CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 23677888888887653 456788999999999999999999999999999999999 4444443
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=4.9e-22 Score=176.47 Aligned_cols=213 Identities=29% Similarity=0.512 Sum_probs=156.4
Q ss_pred chhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecC
Q psy9862 99 LFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLR 177 (378)
Q Consensus 99 l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~ 177 (378)
.+ .++++++.++.+|..+. +++++|++++|.+... .+..+.++++|++|++++|.++.++.. +..+++|++|+++
T Consensus 18 ~~-~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KN-SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TT-EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CC-EEEccCCCCCccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 44 78888899988887654 6789999999998863 245688889999999999988877664 4778899999999
Q ss_pred CCCCccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeec
Q psy9862 178 ENDLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHI 256 (378)
Q Consensus 178 ~n~~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l 256 (378)
+|.+..++. .+..+++|++|++++|.++.++. ..+..+++|++|++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------------------------------RVFDSLTKLTYLSL 140 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEEC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCH---------------------------------HHhCcCcCCCEEEC
Confidence 999887754 46788889999988888776543 12456677777777
Q ss_pred ccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCChhhc
Q psy9862 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIG 335 (378)
Q Consensus 257 ~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~ 335 (378)
++|.+..++... .+..++++.|++++|.++.++. ++..+++|++|++++|+++++|...
T Consensus 141 s~n~l~~~~~~~-------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~- 200 (270)
T 2o6q_A 141 GYNELQSLPKGV-------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA- 200 (270)
T ss_dssp CSSCCCCCCTTT-------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-
T ss_pred CCCcCCccCHhH-------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH-
Confidence 777776655431 1223455566666666666654 3678899999999999999887753
Q ss_pred cCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 336 NLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 336 ~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
+..+++|+++++++|++.+.+. +..++..|++.
T Consensus 201 -~~~l~~L~~L~l~~N~~~c~c~-----~~~~~~~~l~~ 233 (270)
T 2o6q_A 201 -FDSLEKLKMLQLQENPWDCTCN-----GIIYMAKWLKK 233 (270)
T ss_dssp -TTTCTTCCEEECCSSCBCCSSS-----SSHHHHHHHHH
T ss_pred -hccccCCCEEEecCCCeeCCCc-----cHHHHHHHHHh
Confidence 4455699999999999977653 23445555544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=5e-25 Score=200.49 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=97.1
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 181 (378)
.+++++|.++.+++ |..+++|++|++++|.+.+. ...++|++|++++|.++.++. ..+++|++|++++|.+
T Consensus 62 ~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l------~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 62 LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKI 132 (317)
T ss_dssp EEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE------EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCC
T ss_pred EEECCCCcCCcchh-hhhcCCCCEEECcCCccccc------cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCC
Confidence 44444444443322 44445555555555544321 112445555555554443322 1234455555555555
Q ss_pred ccCCh-hhcCCCCCcEEeccCCcCcccC-ccc-ccccccccccccccCCCCceeccCCccccccccccCCcCcceeeccc
Q psy9862 182 IEIPK-ELGNLTRLRELHIQANRLTVLP-PEI-GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA 258 (378)
Q Consensus 182 ~~l~~-~l~~l~~L~~L~l~~~~l~~~~-~~~-~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 258 (378)
+.++. .+..+++|++|++++|.++.++ ..+ ..++ .++.+++++|.++.++.. ..+++|++|++++
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-----------~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-----------TLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSS 200 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-----------TCCEEECTTSCCCEEECC-CCCTTCCEEECCS
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-----------cCCEEECCCCcCcccccc-cccccCCEEECCC
Confidence 44422 3444455555555555544321 111 1111 122245555555444322 2356666666666
Q ss_pred ccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCC--cCChhhcc
Q psy9862 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT--VLPPEIGN 336 (378)
Q Consensus 259 n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~ 336 (378)
|.++.++..+. ..++++.|++++|.++.+|..+..+++|++|++++|.+. .++..+..
T Consensus 201 N~l~~l~~~~~--------------------~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 201 NKLAFMGPEFQ--------------------SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp SCCCEECGGGG--------------------GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred CcCCcchhhhc--------------------ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 66665544321 123444555666666666666666666777777777666 44444444
Q ss_pred CCCccCcceeecc
Q psy9862 337 LDLASHKSVLKMD 349 (378)
Q Consensus 337 l~~~~~l~~l~l~ 349 (378)
++ .++.++++
T Consensus 261 ~~---~L~~l~l~ 270 (317)
T 3o53_A 261 NQ---RVQTVAKQ 270 (317)
T ss_dssp CH---HHHHHHHH
T ss_pred cc---cceEEECC
Confidence 43 55555555
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1e-22 Score=182.28 Aligned_cols=230 Identities=25% Similarity=0.299 Sum_probs=182.5
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccC-CccccCCCCCcEE
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVL-PAEIGNLKNLQIL 174 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l-~~~l~~l~~L~~L 174 (378)
+++ ++++++|.++.++.. |..+++|++|++++|.+.. ..+..+.++++|++|++++|. ++.+ +..+..+++|++|
T Consensus 33 ~l~-~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 33 ASQ-RIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TCS-EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred Cce-EEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 556 899999999987754 8999999999999999986 336678899999999999997 7766 6678899999999
Q ss_pred ecCCCCCccC-ChhhcCCCCCcEEeccCCcCcccCcc-cccccccccccccccCCCCceeccCCcccccccc-ccCCcCc
Q psy9862 175 VLRENDLIEI-PKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRL 251 (378)
Q Consensus 175 ~l~~n~~~~l-~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~-l~~~~~L 251 (378)
++++|.++.+ +..+..+++|++|++++|.++.++.. +..++.++ .+++++|.++.++.. +..+++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-----------HLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-----------EEECCSSCCCEECTTTTTTCTTC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-----------EEECCCCcccccCHHHhcCcccc
Confidence 9999999977 56688999999999999999876643 44444443 499999999988764 8899999
Q ss_pred ceeecccccCCcC-CCCCCCcccccccccccccCCCCccCccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCc
Q psy9862 252 RELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTV 329 (378)
Q Consensus 252 ~~L~l~~n~l~~~-~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~ 329 (378)
++|++++|.+..+ +..+. ..++++.|++++|.++.++. ++..+++|++|++++|.+..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFR--------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTT--------------------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHcc--------------------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 9999999998855 43332 33566778888888887775 48889999999999999883
Q ss_pred CChhhccCCCccCcceeeccCCCCCccchHHhhh
Q psy9862 330 LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQV 363 (378)
Q Consensus 330 ~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~ 363 (378)
........ ..++.+..+.+.+.+..|+.+.+
T Consensus 240 ~~~~~~~~---~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 240 DCRARPLW---AWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SGGGHHHH---HHHHHCCSEECCCBEEESGGGTT
T ss_pred CCCcHHHH---HHHHhcccccCccccCCchHhCC
Confidence 32211111 24566667888898888888765
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=2.4e-22 Score=199.42 Aligned_cols=86 Identities=27% Similarity=0.291 Sum_probs=66.8
Q ss_pred cccccccccCCCCc--------cCccchhhhhccCcccccc-chhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcce
Q psy9862 275 SHKSVLKMDFNPWV--------TPIADQLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 345 (378)
Q Consensus 275 ~~l~~l~l~~~~~~--------~~~~~l~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~ 345 (378)
+.++.+++++|.+. +..++++.|++++|+++.+ |.++..+++|++|+|++|+|+++++.. +..+++|++
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~~L~~ 546 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQV 546 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG--GTTCTTCCE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH--HhCCCCCCE
Confidence 45556666666432 3456788899999999977 556889999999999999999887643 445569999
Q ss_pred eeccCCCCCccchHHhh
Q psy9862 346 LKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 346 l~l~~n~~~~~~~~~~~ 362 (378)
|++++|.+++..|+.+.
T Consensus 547 L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp EECTTSCCCBCCSSCTT
T ss_pred EECCCCcCCCCCHHHHH
Confidence 99999999998887764
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=6e-25 Score=210.20 Aligned_cols=315 Identities=20% Similarity=0.148 Sum_probs=226.2
Q ss_pred ccCCceeeccCCcccCcCccccc-ccc----cccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCC-------
Q psy9862 28 IKNPELELADKGLSSFEELPGLM-NML----YITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPI------- 95 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~-~~~----~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~------- 95 (378)
.++++|++++|.++... +..+. .++ +|++|++++|.+++.+...++..+..++ . |+.++++...-
T Consensus 56 ~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~-L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 56 PALAELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-T-LQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp TTCCEEECTTCCCHHHH-HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-T-CCEEECCSSBCHHHHHHH
T ss_pred CCcCEEeCCCCcCChHH-HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCC-c-eeEEECCCCcCchHHHHH
Confidence 45889999999887522 22232 344 6999999999998777778888888777 5 88887764331
Q ss_pred --------CccchhccccCCccccc-----CCCCCCCCCcccEEEccCCCCCCCCCCcccc-----cCccccEEecCCCC
Q psy9862 96 --------LPFLFLQFPCRMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-----MLETLRALYLGDND 157 (378)
Q Consensus 96 --------~~~l~~~l~l~~~~l~~-----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~-----~l~~L~~L~l~~n~ 157 (378)
.++++ ++++++|.++. ++..+..+++|++|++++|.+.+.. +..+. ..++|++|++++|.
T Consensus 133 l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 133 LCEGLLDPQCRLE-KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHTSTTCCCC-EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHhcCCCcce-EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCC
Confidence 34688 99999999884 3444667899999999999986522 22221 25689999999999
Q ss_pred Ccc-----CCccccCCCCCcEEecCCCCCccC-----Chh-hcCCCCCcEEeccCCcCcc-----cCccccccccccccc
Q psy9862 158 FEV-----LPAEIGNLKNLQILVLRENDLIEI-----PKE-LGNLTRLRELHIQANRLTV-----LPPEIGNLDLASHKS 221 (378)
Q Consensus 158 l~~-----l~~~l~~l~~L~~L~l~~n~~~~l-----~~~-l~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~l~~l~ 221 (378)
++. ++..+..+++|++|++++|.++.. ++. +..+++|++|++++|.++. ++..+..++.+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L---- 286 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL---- 286 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC----
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc----
Confidence 884 566777889999999999998742 222 3468899999999999884 44444444443
Q ss_pred ccccCCCCceeccCCcccc-----cccccc-CCcCcceeecccccCCcCCC--CCCCcccccccccccccCCCCcc----
Q psy9862 222 VLKMDFNPWLVLRENDLIE-----IPKELG-NLSRLRELHIQANRLTVLPP--EIGNLDLASHKSVLKMDFNPWVT---- 289 (378)
Q Consensus 222 ~~~~~~~~~l~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~n~l~~~~~--~~~~l~~~~~l~~l~l~~~~~~~---- 289 (378)
+.+++++|.++. ++..+. ..++|++|++++|.++.... ....+..+++|+.+++++|.+.+
T Consensus 287 -------~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 287 -------KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp -------CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred -------ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 348899998862 333322 33689999999998873210 11223455788999999997753
Q ss_pred --------CccchhhhhccCcccc-----ccchhhcCCCCCCEEEeecCCCCc--CChhhccCC-CccCcceeeccCCCC
Q psy9862 290 --------PIADQLQLVLRENDLI-----EIPKELGNLSRLRELHIQANRLTV--LPPEIGNLD-LASHKSVLKMDFNPW 353 (378)
Q Consensus 290 --------~~~~l~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~l~-~~~~l~~l~l~~n~~ 353 (378)
..+.++.|++++|.++ .++.++..+++|++|++++|+++. +......++ ....++.+.+.++.+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 1558999999999998 688889999999999999999983 222223332 234788888888887
Q ss_pred Cccch
Q psy9862 354 VTPIA 358 (378)
Q Consensus 354 ~~~~~ 358 (378)
.....
T Consensus 440 ~~~~~ 444 (461)
T 1z7x_W 440 SEEME 444 (461)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 65443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=4.9e-22 Score=189.63 Aligned_cols=241 Identities=24% Similarity=0.337 Sum_probs=155.9
Q ss_pred CceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCccc
Q psy9862 31 PELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110 (378)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l 110 (378)
+.++.++..++.++ ..+ .+++++|++++|.+++ ..+..+.+ +++++ .|++++|.+
T Consensus 57 ~~v~c~~~~l~~iP--~~~--~~~l~~L~L~~n~i~~----~~~~~~~~----------------l~~L~-~L~Ls~n~i 111 (452)
T 3zyi_A 57 SKVVCTRRGLSEVP--QGI--PSNTRYLNLMENNIQM----IQADTFRH----------------LHHLE-VLQLGRNSI 111 (452)
T ss_dssp CEEECCSSCCSSCC--SCC--CTTCSEEECCSSCCCE----ECTTTTTT----------------CTTCC-EEECCSSCC
T ss_pred cEEEECCCCcCccC--CCC--CCCccEEECcCCcCce----ECHHHcCC----------------CCCCC-EEECCCCcc
Confidence 34555555555433 111 2567777777777664 22222222 33556 777777777
Q ss_pred ccCC-CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCC-CCCccCCh-
Q psy9862 111 SSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRE-NDLIEIPK- 186 (378)
Q Consensus 111 ~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~-n~~~~l~~- 186 (378)
+.++ ..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++.++. .+..+++|++|++++ +.+..++.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 112 RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 7554 347777788888888877764 223446777778888888877775544 567777788888777 44555543
Q ss_pred hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccc-cccccCCcCcceeecccccCCcCC
Q psy9862 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLP 265 (378)
Q Consensus 187 ~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~ 265 (378)
.+..+++|++|++++|.++.+|. +..+. .++.+++++|.+..+ +..+..+++|++|++++|.+..++
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMPN-LTPLV-----------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCCC-CTTCT-----------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred hccCCCCCCEEECCCCccccccc-ccccc-----------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 46777778888888777776542 33332 233377777777755 445777777888888777777443
Q ss_pred CCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh-hcCCCCCCEEEeecCCCC
Q psy9862 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLT 328 (378)
Q Consensus 266 ~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~ 328 (378)
... ....++++.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 259 ~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNA-------------------FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTT-------------------TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHH-------------------hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 321 12345677788888888877654 577889999999998766
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=4.6e-22 Score=189.14 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=122.1
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEe
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILV 175 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~ 175 (378)
+++ .|++++|.++.++.. |.++++|++|++++|.+... .+..+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 89 ~L~-~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 89 HLE-ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SCC-EEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCC-EEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 455 666666666655433 66666777777777766642 23346666677777777776665443 456666777777
Q ss_pred cCCC-CCccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccc-cccccCCcCcc
Q psy9862 176 LREN-DLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI-PKELGNLSRLR 252 (378)
Q Consensus 176 l~~n-~~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l-~~~l~~~~~L~ 252 (378)
+++| .+..++. .|..+++|++|++++|.++.+|. +..+. .++.+++++|.++.+ +..+..+++|+
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI-----------KLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS-----------SCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc-----------ccCEEECCCCccCccChhhhccCccCC
Confidence 7663 3444433 46666677777777776665542 22222 223366666666654 34466667777
Q ss_pred eeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh-hcCCCCCCEEEeecCCCC
Q psy9862 253 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLT 328 (378)
Q Consensus 253 ~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~ 328 (378)
+|++++|.+..++... ....++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 235 ~L~L~~n~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNA-------------------FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTCCCCEECTTS-------------------STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCceeEEChhh-------------------hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777666443321 12345667778888888877654 577888999999988765
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.2e-23 Score=196.81 Aligned_cols=225 Identities=19% Similarity=0.196 Sum_probs=170.9
Q ss_pred CccchhccccCCcccccCCC-CCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEE
Q psy9862 96 LPFLFLQFPCRMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIL 174 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 174 (378)
+++++ .|++++|.++.++. .|..+++|++|++++|.+.+ . ++ +..+++|++|++++|.++.++. .++|++|
T Consensus 33 ~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~-~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVK-ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-T-LD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCC-EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-E-EE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCcc-EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-C-cc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 44677 89999999987654 58899999999999999875 2 22 7888999999999998875543 3789999
Q ss_pred ecCCCCCccCChhhcCCCCCcEEeccCCcCccc-CcccccccccccccccccCCCCceeccCCccccc-ccccc-CCcCc
Q psy9862 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI-PKELG-NLSRL 251 (378)
Q Consensus 175 ~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l-~~~l~-~~~~L 251 (378)
++++|.++.++. ..+++|+.|++++|.++.+ |..++.++.++. +++++|.++.+ |..+. .+++|
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-----------L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY-----------LDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE-----------EECTTSCCCEEEGGGGGGGTTTC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCE-----------EECCCCCCCCcChHHHhhhCCcc
Confidence 999999887654 3467899999999988855 334555544443 88888888753 44454 67888
Q ss_pred ceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCC
Q psy9862 252 RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
+.|++++|.++.++... .++.++.|++++|.++.+|..+..+++|+.|++++|.++++|
T Consensus 172 ~~L~Ls~N~l~~~~~~~---------------------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQV---------------------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CEEECTTSCCCEEECCC---------------------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred cEEecCCCccccccccc---------------------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 88888888877554321 245677888888899888888888999999999999999988
Q ss_pred hhhccCCCccCcceeeccCCCCCccchHHhhhhh
Q psy9862 332 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGI 365 (378)
Q Consensus 332 ~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~ 365 (378)
..+..++ +++.+++++|++.+..++.+....
T Consensus 231 ~~l~~l~---~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 231 KALRFSQ---NLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp TTCCCCT---TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred hhhccCC---CCCEEEcCCCCCcCcchHHHHHhC
Confidence 8765554 899999999999854444444433
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=192.63 Aligned_cols=253 Identities=20% Similarity=0.275 Sum_probs=189.3
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
..++++|++++|.++.++. ..+.++++|++|++++|.+++ ..+..+.+ +++++ +++++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~----------------l~~L~-~L~Ls 108 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINT----IEEDSFSS----------------LGSLE-HLDLS 108 (353)
T ss_dssp CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCE----ECTTTTTT----------------CTTCC-EEECC
T ss_pred cccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCc----cCHhhcCC----------------CCCCC-EEECC
Confidence 3579999999999987542 357799999999999999875 22333333 33666 89999
Q ss_pred CcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccC-CccccCCCCCcEEecCCCCCcc
Q psy9862 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVL-PAEIGNLKNLQILVLRENDLIE 183 (378)
Q Consensus 107 ~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l-~~~l~~l~~L~~L~l~~n~~~~ 183 (378)
+|.++.++.. |.++++|++|++++|.+........+..+++|++|++++|. ++.+ +..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 9999988877 88899999999999998853211367889999999999984 6655 4567888999999999999886
Q ss_pred C-ChhhcCCCCCcEEeccCCcCcccCcccc-cccccccccccccCCCCceeccCCcccccccc----ccCCcCcceeecc
Q psy9862 184 I-PKELGNLTRLRELHIQANRLTVLPPEIG-NLDLASHKSVLKMDFNPWLVLRENDLIEIPKE----LGNLSRLRELHIQ 257 (378)
Q Consensus 184 l-~~~l~~l~~L~~L~l~~~~l~~~~~~~~-~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~----l~~~~~L~~L~l~ 257 (378)
+ |..+..+++|++|++++|.++.++..+. .++.++ .+++++|.++.++.. ......++.++++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-----------~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE-----------CLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE-----------EEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhccccc-----------EEECCCCccccccccccccccccchhhccccc
Confidence 5 7788899999999999998876655332 233333 388888888754321 2345667778887
Q ss_pred cccCC-----cCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhh-cCCCCCCEEEeecCCCCcCC
Q psy9862 258 ANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 258 ~n~l~-----~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~l~~~~ 331 (378)
++.+. .+|.. .+..++++.|++++|.++.+|..+ ..+++|++|++++|++.+..
T Consensus 258 ~~~l~~~~l~~l~~~--------------------l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 258 NVKITDESLFQVMKL--------------------LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SCBCCHHHHHHHHHH--------------------HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccccCcchhhhHHH--------------------HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 77665 12221 234567778889999999888874 78999999999999998554
Q ss_pred h
Q psy9862 332 P 332 (378)
Q Consensus 332 ~ 332 (378)
+
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 4
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=5.2e-23 Score=186.71 Aligned_cols=250 Identities=16% Similarity=0.131 Sum_probs=186.9
Q ss_pred ccCCceeeccCCcccCcCcccccccccccEEEcccccccC-chhHHHHh-hccccccCCccccCCCCCCCCccchhcccc
Q psy9862 28 IKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKG-EIIVQVIK-GLSNSKYNYIPILHVTSLPILPFLFLQFPC 105 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~-~~~~~~~~-~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l 105 (378)
.+++.+++++|.+ .++ +.+... |+.|++++|.+.. .++..+.. .+.... +++++ ++++
T Consensus 43 ~~L~~l~l~~n~l-~~p--~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--------------l~~L~-~L~L 102 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADL--GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG--------------ISGLQ-ELTL 102 (312)
T ss_dssp EECTTHHHHCCTT-CCC--HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT--------------TSCCC-EEEE
T ss_pred CCceeEeeccccc-ccH--HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC--------------cCCcc-EEEc
Confidence 4588999999998 333 234433 8899999998842 22222210 000001 23556 9999
Q ss_pred CCcccc-cCCCCC--CCCCcccEEEccCCCCCCCCCCcccccC-----ccccEEecCCCCCccCC-ccccCCCCCcEEec
Q psy9862 106 RMNRLS-SLPRGF--GAFPVLEVLDLTYNNLNEQSLPGNFFML-----ETLRALYLGDNDFEVLP-AEIGNLKNLQILVL 176 (378)
Q Consensus 106 ~~~~l~-~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~~l~~l-----~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l 176 (378)
++|.++ .+|..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|+++.++ ..++.+++|++|++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 999998 677775 8899999999999999863 6667666 89999999999999765 67899999999999
Q ss_pred CCCCCcc---CChhh--cCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCcccccc--ccccCCc
Q psy9862 177 RENDLIE---IPKEL--GNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP--KELGNLS 249 (378)
Q Consensus 177 ~~n~~~~---l~~~l--~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~--~~l~~~~ 249 (378)
++|.+.. ++..+ ..+++|++|++++|.++.++.....+ +..+..++.+++++|.++..+ ..+..++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-------AAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-------HHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-------HhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 9999763 34444 78999999999999998443211111 112234445999999998654 3466789
Q ss_pred CcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCc
Q psy9862 250 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 329 (378)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~ 329 (378)
+|++|++++|.++.+|..+. ++++.|++++|+++.+|. +..+++|++|++++|++++
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~----------------------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLP----------------------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCC----------------------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccChhhhhcc----------------------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 99999999999998876531 467788899999998876 8899999999999999884
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.1e-23 Score=197.36 Aligned_cols=231 Identities=23% Similarity=0.275 Sum_probs=119.4
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCc
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMN 108 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~ 108 (378)
+++.|++++|.++.+. ...+..+++|++|++++|.+++.. + +.. +++++ +|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~----------------l~~L~-~L~Ls~N 90 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETL----D--LES----------------LSTLR-TLDLNNN 90 (487)
T ss_dssp GCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEE----E--CTT----------------CTTCC-EEECCSS
T ss_pred CccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCc----c--ccc----------------CCCCC-EEEecCC
Confidence 4556666666655432 123445566666666666554311 0 111 22344 5555555
Q ss_pred ccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCccC-Ch
Q psy9862 109 RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIEI-PK 186 (378)
Q Consensus 109 ~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~~l-~~ 186 (378)
.++.++. .++|++|++++|.+.+.. + ..+++|+.|++++|.++.+ |..++.+++|++|++++|.++.+ |.
T Consensus 91 ~l~~l~~----~~~L~~L~L~~N~l~~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 91 YVQELLV----GPSIETLHAANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEEEEE----CTTCCEEECCSSCCCCEE-E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred cCCCCCC----CCCcCEEECcCCcCCCCC-c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 5554332 145555555555554311 1 1234555555555555533 33445555555555555555532 33
Q ss_pred hhc-CCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCC
Q psy9862 187 ELG-NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 265 (378)
Q Consensus 187 ~l~-~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~ 265 (378)
.+. .+++|+.|++++|.++. ++. ...+++|+.|++++|.++.+|
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~----------------------------------~~~-~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYD----------------------------------VKG-QVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCE----------------------------------EEC-CCCCTTCCEEECCSSCCCEEC
T ss_pred HHhhhCCcccEEecCCCcccc----------------------------------ccc-cccCCCCCEEECCCCCCCCCC
Confidence 332 45555555555555543 322 224566666666666666555
Q ss_pred CCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCC--cCChhhccCCCccCc
Q psy9862 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT--VLPPEIGNLDLASHK 343 (378)
Q Consensus 266 ~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~l~~~~~l 343 (378)
+.+. ..++++.|++++|.++.+|.++..+++|+.|++++|.+. .+|..+..++ .+
T Consensus 208 ~~~~--------------------~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~---~L 264 (487)
T 3oja_A 208 PEFQ--------------------SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ---RV 264 (487)
T ss_dssp GGGG--------------------GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH---HH
T ss_pred HhHc--------------------CCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC---CC
Confidence 4322 223444555666666666666666777777777777776 4444444443 55
Q ss_pred ceeecc
Q psy9862 344 SVLKMD 349 (378)
Q Consensus 344 ~~l~l~ 349 (378)
+.++++
T Consensus 265 ~~l~~~ 270 (487)
T 3oja_A 265 QTVAKQ 270 (487)
T ss_dssp HHHHHH
T ss_pred cEEecc
Confidence 555654
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=177.27 Aligned_cols=233 Identities=17% Similarity=0.199 Sum_probs=141.6
Q ss_pred ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc-cCCCCC--CCCCcccEEE
Q psy9862 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS-SLPRGF--GAFPVLEVLD 127 (378)
Q Consensus 51 ~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~-~~~~~~--~~~~~L~~L~ 127 (378)
....++.+.+.++.+++.....++..+.. ++++ ++++++|.++ ..|..+ ..+++|++|+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-----------------~~L~-~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 123 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAY-----------------SRLK-ELTLEDLKITGTMPPLPLEATGLALSSLR 123 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHH-----------------SCCC-EEEEESCCCBSCCCCCSSSCCCBCCSSCE
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhccc-----------------Ccee-EEEeeCCEeccchhhhhhhccCCCCCEEE
Confidence 34457777887777765433333332221 1233 6666666666 344444 5666677777
Q ss_pred ccCCCCCCCCCC----cccccCccccEEecCCCCCccCC-ccccCCCCCcEEecCCCCCcc---CC--hhhcCCCCCcEE
Q psy9862 128 LTYNNLNEQSLP----GNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLRENDLIE---IP--KELGNLTRLREL 197 (378)
Q Consensus 128 l~~n~i~~~~~~----~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~~~---l~--~~l~~l~~L~~L 197 (378)
+++|.+.+ ..+ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|++.. ++ ..+..+++|++|
T Consensus 124 Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 124 LRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp EESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred eecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 77766654 111 11234556666666666665433 345556666666666665442 21 112445555555
Q ss_pred eccCCcCcccCcccccccccccccccccCCCCceeccCCccccccc-cccCCcCcceeecccccCCcC-CCCCCCccccc
Q psy9862 198 HIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVL-PPEIGNLDLAS 275 (378)
Q Consensus 198 ~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~-~~~~~~l~~~~ 275 (378)
++++|.++.++.. +. .+..+++|++|++++|.+... |..+..+.
T Consensus 203 ~Ls~N~l~~l~~~-------------------------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--- 248 (310)
T 4glp_A 203 ALRNTGMETPTGV-------------------------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--- 248 (310)
T ss_dssp BCCSSCCCCHHHH-------------------------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC---
T ss_pred ECCCCCCCchHHH-------------------------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhcc---
Confidence 5555555432211 11 145678899999999988855 65554442
Q ss_pred ccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCc
Q psy9862 276 HKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 355 (378)
Q Consensus 276 ~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 355 (378)
.+++++.|++++|.++.+|..+. ++|++|++++|+|+++|. . ..+++|++|++++|++++
T Consensus 249 --------------~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~---~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 --------------WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-P---DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --------------CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-T---TSCCCCSCEECSSTTTSC
T ss_pred --------------CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-h---hhCCCccEEECcCCCCCC
Confidence 12566677788888888877664 799999999999998865 3 344699999999999975
Q ss_pred c
Q psy9862 356 P 356 (378)
Q Consensus 356 ~ 356 (378)
+
T Consensus 309 ~ 309 (310)
T 4glp_A 309 P 309 (310)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.8e-21 Score=174.88 Aligned_cols=197 Identities=21% Similarity=0.361 Sum_probs=147.8
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEe
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILV 175 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 175 (378)
+++++ +++++++.++.++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 40 l~~L~-~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGIT-TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCC-EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcC-EEEeeCCCccCch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 66777 8888888888776 47788888888888888875 333 778888888888888887664 577788888888
Q ss_pred cCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceee
Q psy9862 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255 (378)
Q Consensus 176 l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~ 255 (378)
+++|.++.++. +..+++|++|++++|.++.++. +..++. ++.+++++|.++.++. +..+++|+.|+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~-----------L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTN-----------LQYLSIGNAQVSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTT-----------CCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCC-----------ccEEEccCCcCCCChh-hcCCCCCCEEE
Confidence 88888887754 7888888888888888876654 333333 3347778887777666 77788888888
Q ss_pred cccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhh
Q psy9862 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334 (378)
Q Consensus 256 l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 334 (378)
+++|.+..++. + ...++++.|++++|.++.++. +..+++|++|++++|.+++.|...
T Consensus 180 l~~n~l~~~~~----l-----------------~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 180 ADDNKISDISP----L-----------------ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp CCSSCCCCCGG----G-----------------GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred CCCCccCcChh----h-----------------cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 88887775543 1 234566677788888887773 788899999999999988766544
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.9e-20 Score=166.71 Aligned_cols=214 Identities=23% Similarity=0.281 Sum_probs=157.4
Q ss_pred ccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCC-CCCCCCcccEEEccCC
Q psy9862 53 LYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR-GFGAFPVLEVLDLTYN 131 (378)
Q Consensus 53 ~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~-~~~~~~~L~~L~l~~n 131 (378)
++|++|++++|.+++ ..+..+.. +++++ ++++++|.++.++. .|..+++|++|++++|
T Consensus 28 ~~l~~L~ls~n~l~~----~~~~~~~~----------------l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH----LGSYSFFS----------------FPELQ-VLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TTCCEEECTTCCCCE----ECTTTTTT----------------CTTCS-EEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCccEEECCCCcccc----cCHhHhcc----------------ccCCc-EEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 468888888888764 11112222 33566 88888888886665 4888899999999999
Q ss_pred CCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCCCcc--CChhhcCCCCCcEEeccCCcCcccC
Q psy9862 132 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLIE--IPKELGNLTRLRELHIQANRLTVLP 208 (378)
Q Consensus 132 ~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~~~--l~~~l~~l~~L~~L~l~~~~l~~~~ 208 (378)
.+.. ..+..+.++++|++|++++|.+..++. .++.+++|++|++++|.++. +|..+..+++|++|++++|.++.++
T Consensus 87 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 87 PIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ccCc-cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 9876 335668888999999999998886655 57888899999999999885 5788889999999999999888654
Q ss_pred c-ccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCC
Q psy9862 209 P-EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287 (378)
Q Consensus 209 ~-~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~ 287 (378)
. .+..+..++.+.. .+++++|.+..++.......+|++|++++|.++.++... +..+++|+.+++++|++
T Consensus 166 ~~~~~~l~~L~~l~l-------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 166 CTDLRVLHQMPLLNL-------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GGGGHHHHTCTTCCE-------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCSSCB
T ss_pred HHHhhhhhhccccce-------eeecCCCcccccCccccCCCcccEEECCCCceeecCHhH--hcccccccEEEccCCcc
Confidence 3 4444444332221 388889999888777666678999999999999777643 34456677777777777
Q ss_pred ccCccchhhh
Q psy9862 288 VTPIADQLQL 297 (378)
Q Consensus 288 ~~~~~~l~~L 297 (378)
.+.++.+..+
T Consensus 237 ~c~c~~l~~l 246 (276)
T 2z62_A 237 DCSCPRIDYL 246 (276)
T ss_dssp CCCTTTTHHH
T ss_pred cccCCchHHH
Confidence 7666655544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=9.1e-21 Score=169.93 Aligned_cols=203 Identities=24% Similarity=0.275 Sum_probs=134.0
Q ss_pred cccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCC-CCCCCCCcccEE
Q psy9862 48 GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLP-RGFGAFPVLEVL 126 (378)
Q Consensus 48 ~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~-~~~~~~~~L~~L 126 (378)
.+.++++++.++++++.++. +|..+. +.++ .+++++|.++.++ ..|..+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-----ip~~~~------------------~~l~-~L~L~~N~l~~~~~~~~~~l~~L~~L 60 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-----LPPDLP------------------KDTT-ILHLSENLLYTFSLATLMPYTRLTQL 60 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-----CCSCCC------------------TTCC-EEECTTSCCSEEEGGGGTTCTTCCEE
T ss_pred cccccCCccEEECCCCCCCc-----CCCCCC------------------CCCC-EEEcCCCcCCccCHHHhhcCCCCCEE
Confidence 45566677777777766652 222111 1333 6677777776543 337777777777
Q ss_pred EccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCC-hhhcCCCCCcEEeccCCcCc
Q psy9862 127 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLT 205 (378)
Q Consensus 127 ~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~-~~l~~l~~L~~L~l~~~~l~ 205 (378)
++++|.+... +. ...+++|++|++++|.++.+|..+..+++|++|++++|.++.++ ..|..+++|++|++++|.++
T Consensus 61 ~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 61 NLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ECTTSCCCEE--EC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCcc--cC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 7777777642 22 25677777888887777777777777777888888888777764 45777777888888877777
Q ss_pred ccCcc-cccccccccccccccCCCCceeccCCcccccccc-ccCCcCcceeecccccCCcCCCCCCCccccccccccccc
Q psy9862 206 VLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 283 (378)
Q Consensus 206 ~~~~~-~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~ 283 (378)
.++.. +..++.+ +.+++++|.++.+|.. +..+++|++|++++|.+..+|..+... ..|+.++++
T Consensus 138 ~~~~~~~~~l~~L-----------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~---~~L~~l~L~ 203 (290)
T 1p9a_G 138 TLPPGLLTPTPKL-----------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS---HLLPFAFLH 203 (290)
T ss_dssp CCCTTTTTTCTTC-----------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---CCCSEEECC
T ss_pred ccChhhcccccCC-----------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc---ccCCeEEeC
Confidence 65542 2223222 2366666776666654 567888888888888888888765444 466777777
Q ss_pred CCCCccCc
Q psy9862 284 FNPWVTPI 291 (378)
Q Consensus 284 ~~~~~~~~ 291 (378)
+|++...+
T Consensus 204 ~Np~~C~c 211 (290)
T 1p9a_G 204 GNPWLCNC 211 (290)
T ss_dssp SCCBCCSG
T ss_pred CCCccCcC
Confidence 77775543
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=170.85 Aligned_cols=195 Identities=21% Similarity=0.338 Sum_probs=133.9
Q ss_pred CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcE
Q psy9862 117 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRE 196 (378)
Q Consensus 117 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~ 196 (378)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3456677788888887764 23 46677788888888887776665 777778888888888877764 5777778888
Q ss_pred EeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccc
Q psy9862 197 LHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 276 (378)
Q Consensus 197 L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~ 276 (378)
|++++|.++.++. +..++.+ +.+++++|.++.++. +..+++|++|++++|.+..++. + .
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L-----------~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l---~---- 170 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNL-----------QVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-L---A---- 170 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTC-----------CEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G---T----
T ss_pred EECCCCCCCCchh-hcCCCCC-----------CEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-h---c----
Confidence 8888887776543 3333333 337777777776655 6677788888888877765543 1 1
Q ss_pred cccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCc
Q psy9862 277 KSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 355 (378)
Q Consensus 277 l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~ 355 (378)
.+++++.|++++|.++.++. +..+++|++|++++|+++++++ + ..+++|+++++++|++++
T Consensus 171 -------------~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l---~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 -------------NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-L---ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -------------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-G---TTCTTCCEEEEEEEEEEC
T ss_pred -------------CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-c---cCCCCCCEEEccCCeeec
Confidence 22445566666666666654 6677788888888888876663 3 344577888888887765
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.2e-20 Score=167.65 Aligned_cols=221 Identities=25% Similarity=0.369 Sum_probs=142.5
Q ss_pred ceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 32 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
.+++.++.+.. +.....+++|+.|++++|.+.. .+.+.. +++++ .+++++|.++
T Consensus 23 ~l~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~------~~~l~~----------------l~~L~-~L~l~~n~l~ 76 (272)
T 3rfs_A 23 KANLKKKSVTD---AVTQNELNSIDQIIANNSDIKS------VQGIQY----------------LPNVR-YLALGGNKLH 76 (272)
T ss_dssp HHHHTCSCTTS---EECHHHHTTCCEEECTTSCCCC------CTTGGG----------------CTTCC-EEECTTSCCC
T ss_pred HHHhcCccccc---ccccccccceeeeeeCCCCccc------cccccc----------------CCCCc-EEECCCCCCC
Confidence 45555555543 2345577778888888877654 111221 33455 6677777666
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCCCccCChh-hc
Q psy9862 112 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLIEIPKE-LG 189 (378)
Q Consensus 112 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~~~l~~~-l~ 189 (378)
.++ .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.++. .++.+++|++|++++|.++.++.. +.
T Consensus 77 ~~~-~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 77 DIS-ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp CCG-GGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred Cch-hhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc
Confidence 553 46667777777777777764 223445667777777777777765544 356667777777777777666443 56
Q ss_pred CCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCC
Q psy9862 190 NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 269 (378)
Q Consensus 190 ~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 269 (378)
.+++|+.|++++|.++.++. ..+..+++|++|++++|.+..+++..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~- 200 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPE---------------------------------GVFDKLTQLKDLRLYQNQLKSVPDGV- 200 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCSSCCSCCCTTT-
T ss_pred cCccCCEEECCCCCcCccCH---------------------------------HHhcCCccCCEEECCCCcCCccCHHH-
Confidence 66777777777776654432 12467788888888888888666532
Q ss_pred CcccccccccccccCCCCccCccchhhhhccCcccc-ccchhhcCCC
Q psy9862 270 NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLI-EIPKELGNLS 315 (378)
Q Consensus 270 ~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~-~l~~~l~~~~ 315 (378)
+..+++|+.+++++|++.+.++.++.++++.|.++ .+|.+++.++
T Consensus 201 -~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 201 -FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -HhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 34457777888888888877888888888877776 6666555443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=4e-21 Score=170.73 Aligned_cols=217 Identities=22% Similarity=0.339 Sum_probs=132.5
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 181 (378)
.+.+..+.+..+. ....++.|++|++++|.+.. ...+..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 23 ~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 23 KANLKKKSVTDAV-TQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC
T ss_pred HHHhcCccccccc-ccccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 3444444444321 13455667777777776653 233566677777777777666543 456667777777777777
Q ss_pred ccCCh-hhcCCCCCcEEeccCCcCcccCcc-cccccccccccccccCCCCceeccCCcccccccc-ccCCcCcceeeccc
Q psy9862 182 IEIPK-ELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQA 258 (378)
Q Consensus 182 ~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~-~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~ 258 (378)
+.++. .+..+++|++|++++|.++.+++. +..+..++ .+++++|.++.++.. +..+++|++|++++
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT-----------YLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-----------EEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC-----------EEECCCCccCccCHHHhccCccCCEEECCC
Confidence 66543 356667777777777766654432 23332222 255555555555443 56778888888888
Q ss_pred ccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh-hcCCCCCCEEEeecCCCCcCChhhccC
Q psy9862 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNL 337 (378)
Q Consensus 259 n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~l 337 (378)
|.++.++... .+.+++++.|++++|.++.++.. +..+++|++|++++|.+.+. +
T Consensus 167 n~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~ 221 (272)
T 3rfs_A 167 NQLQSLPEGV-------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------C 221 (272)
T ss_dssp SCCCCCCTTT-------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------T
T ss_pred CCcCccCHHH-------------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------C
Confidence 8877665432 12334556666777777665543 56778888888888866622 2
Q ss_pred CCccCcceeeccCCCCCccchHHhh
Q psy9862 338 DLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 338 ~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
++++.+++++|.++|.+|..+.
T Consensus 222 ---~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 222 ---PGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp ---TTTHHHHHHHHHTGGGBBCTTS
T ss_pred ---cHHHHHHHHHHhCCCcccCccc
Confidence 2677777777777777776554
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=3.2e-22 Score=187.01 Aligned_cols=241 Identities=18% Similarity=0.199 Sum_probs=148.8
Q ss_pred cccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCccccc----CCCC-------
Q psy9862 48 GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSS----LPRG------- 116 (378)
Q Consensus 48 ~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~----~~~~------- 116 (378)
.+..+++|++|++++|.+++.++..++..+.+++ +++ ++++++|.+.. +|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~----------------~L~-~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK----------------DLE-IAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT----------------TCC-EEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC----------------Ccc-EEeCcccccCccccchhHHHHHHHHH
Confidence 4557889999999999998766666666666555 455 66666654432 2222
Q ss_pred CCCCCcccEEEccCCCCCCCC---CCcccccCccccEEecCCCCCc-----cCCccccCC---------CCCcEEecCCC
Q psy9862 117 FGAFPVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDNDFE-----VLPAEIGNL---------KNLQILVLREN 179 (378)
Q Consensus 117 ~~~~~~L~~L~l~~n~i~~~~---~~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l---------~~L~~L~l~~n 179 (378)
+..+++|++|++++|.+.+.. ++..+..+++|++|++++|.++ .++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 367788999999999887521 3445677888999999988876 233334444 78888888888
Q ss_pred CCc--cCC---hhhcCCCCCcEEeccCCcCc--ccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcc
Q psy9862 180 DLI--EIP---KELGNLTRLRELHIQANRLT--VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLR 252 (378)
Q Consensus 180 ~~~--~l~---~~l~~l~~L~~L~l~~~~l~--~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~ 252 (378)
+++ .++ ..+..+++|+.|++++|.++ .+... .+..+..+++|+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l------------------------------~~~~l~~~~~L~ 219 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL------------------------------LLEGLAYCQELK 219 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH------------------------------HHTTGGGCTTCC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH------------------------------HHHHhhcCCCcc
Confidence 886 233 45667788888888888776 11100 011234445555
Q ss_pred eeecccccCC-----cCCCCCCCcccccccccccccCCCCccCccchhhhhccCcccc-----ccchhhcC--CCCCCEE
Q psy9862 253 ELHIQANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLI-----EIPKELGN--LSRLREL 320 (378)
Q Consensus 253 ~L~l~~n~l~-----~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~-----~l~~~l~~--~~~L~~L 320 (378)
.|++++|.++ .++..+ ...++++.|++++|.++ .++.++.. +++|++|
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l--------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIAL--------------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHG--------------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred EEECcCCCCCcHHHHHHHHHH--------------------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 5555555542 122111 11223334444444443 23455533 7778888
Q ss_pred EeecCCCCc-----CChhh-ccCCCccCcceeeccCCCCCccch
Q psy9862 321 HIQANRLTV-----LPPEI-GNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 321 ~l~~n~l~~-----~~~~~-~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
++++|.++. +|..+ .++ ++|++|++++|++++..+
T Consensus 280 ~L~~n~i~~~g~~~l~~~l~~~l---~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 280 RLQYNEIELDAVRTLKTVIDEKM---PDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECCSSCCBHHHHHHHHHHHHHHC---TTCCEEECTTSBSCTTSH
T ss_pred ECcCCcCCHHHHHHHHHHHHhcC---CCceEEEccCCcCCcchh
Confidence 888887775 55544 223 477788888888776663
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.5e-19 Score=158.59 Aligned_cols=132 Identities=30% Similarity=0.434 Sum_probs=95.3
Q ss_pred cchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEec
Q psy9862 98 FLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVL 176 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l 176 (378)
..+ .++++++.++.+|..+. +.+++|++++|.+.. ..+..+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 15 ~~~-~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKK-EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGT-EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCe-EEecCCCCccccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 344 78888888888887654 678888888888876 335567788888888888888875543 4677888888888
Q ss_pred CCCCCccCC-hhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceee
Q psy9862 177 RENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255 (378)
Q Consensus 177 ~~n~~~~l~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~ 255 (378)
++|.++.++ ..+..+++|++|++++|.++.++.. .+..+++|++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------~~~~l~~L~~L~ 137 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG---------------------------------VFDRLTKLKELR 137 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------------------------TTTTCTTCCEEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh---------------------------------HhccCCcccEEE
Confidence 888888765 3467778888888888777655431 234566677777
Q ss_pred cccccCCcCCC
Q psy9862 256 IQANRLTVLPP 266 (378)
Q Consensus 256 l~~n~l~~~~~ 266 (378)
+++|.++.++.
T Consensus 138 Ls~N~l~~~~~ 148 (251)
T 3m19_A 138 LNTNQLQSIPA 148 (251)
T ss_dssp CCSSCCCCCCT
T ss_pred CcCCcCCccCH
Confidence 77776665553
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.2e-20 Score=164.45 Aligned_cols=208 Identities=21% Similarity=0.265 Sum_probs=158.8
Q ss_pred CcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccCCc-cccCCCCCcEEecCC-CCCcc
Q psy9862 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPA-EIGNLKNLQILVLRE-NDLIE 183 (378)
Q Consensus 107 ~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l~~-~l~~l~~L~~L~l~~-n~~~~ 183 (378)
+..++.+|. +. +++++|++++|.+... .+..+.++++|++|++++|. ++.++. .+..+++|++|++++ |.++.
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 334777776 43 4888999999998762 24467888899999999986 876655 678888999999998 88887
Q ss_pred CC-hhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCC-cccccccc-ccCCcCcc-eeecccc
Q psy9862 184 IP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREN-DLIEIPKE-LGNLSRLR-ELHIQAN 259 (378)
Q Consensus 184 l~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~-~l~~l~~~-l~~~~~L~-~L~l~~n 259 (378)
++ ..|..+++|++|++++|.++.+|. +..+..++.+ ..+++++| .++.++.. +..+++|+ ++++++|
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L--------~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF--------FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE--------EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc--------cEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 75 467888899999999998888775 5555444421 13888888 88877764 78899999 9999999
Q ss_pred cCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCcc-ccccch-hhcCC-CCCCEEEeecCCCCcCChhhcc
Q psy9862 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLREND-LIEIPK-ELGNL-SRLRELHIQANRLTVLPPEIGN 336 (378)
Q Consensus 260 ~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~-l~~l~~-~l~~~-~~L~~L~l~~n~l~~~~~~~~~ 336 (378)
.+..+|..... . ++++.|++++|+ ++.++. ++..+ ++|++|++++|+++++|.. .
T Consensus 167 ~l~~i~~~~~~-------------------~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~ 224 (239)
T 2xwt_C 167 GFTSVQGYAFN-------------------G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--G 224 (239)
T ss_dssp CCCEECTTTTT-------------------T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--T
T ss_pred CCcccCHhhcC-------------------C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--H
Confidence 98877754311 1 467788888884 887754 57788 9999999999999998875 3
Q ss_pred CCCccCcceeeccCCC
Q psy9862 337 LDLASHKSVLKMDFNP 352 (378)
Q Consensus 337 l~~~~~l~~l~l~~n~ 352 (378)
++ +++.|+++++.
T Consensus 225 ~~---~L~~L~l~~~~ 237 (239)
T 2xwt_C 225 LE---HLKELIARNTW 237 (239)
T ss_dssp CT---TCSEEECTTC-
T ss_pred hc---cCceeeccCcc
Confidence 44 88999998875
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.9e-19 Score=157.08 Aligned_cols=157 Identities=31% Similarity=0.457 Sum_probs=84.9
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEe
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILV 175 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~ 175 (378)
+++ ++++++|.++.++.. |..+++|++|++++|.+... .+..+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 62 ~L~-~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 62 KLR-LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TCC-EEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCC-EEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 444 555555555555444 45555566666665555541 12334555555555555555554432 345555555555
Q ss_pred cCCCCCccCChh-hcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCccee
Q psy9862 176 LRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLREL 254 (378)
Q Consensus 176 l~~n~~~~l~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L 254 (378)
+++|.++.++.. +..+++|+.|++++|.++.++. ..+..+++|++|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------------~~~~~l~~L~~L 186 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---------------------------------GAFDKLTELKTL 186 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------------------------TTTTTCTTCCEE
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeCh---------------------------------hHhccCCCcCEE
Confidence 555555555432 4555555555555555544332 125566777777
Q ss_pred ecccccCCcCCCCCCCcccccccccccccCCCCccCc
Q psy9862 255 HIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPI 291 (378)
Q Consensus 255 ~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~ 291 (378)
++++|.+..++... +..+++|+.+++++|++...+
T Consensus 187 ~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 187 KLDNNQLKRVPEGA--FDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp ECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCSS
T ss_pred ECCCCcCCcCCHHH--hccccCCCEEEecCCCeeCCC
Confidence 77777777665532 233455566666666655444
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=6.6e-21 Score=187.87 Aligned_cols=263 Identities=13% Similarity=0.013 Sum_probs=143.8
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCC--CCCCCcccccCccccEEecCCCCCccCCccccCCCCCcE
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLN--EQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~ 173 (378)
+++++ .+++++|.+..++..+..+++|++|++++.... .......+..+++|+.|.++++....++..+..+++|++
T Consensus 219 ~~~L~-~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLV-SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCC-EEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCc-EEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 45555 566666555554444555555555555532211 001122334445555555555444445555555666666
Q ss_pred EecCCCCCcc--CChhhcCCCCCcEEeccCCcCc--ccCccccccccccccccc-------------------------c
Q psy9862 174 LVLRENDLIE--IPKELGNLTRLRELHIQANRLT--VLPPEIGNLDLASHKSVL-------------------------K 224 (378)
Q Consensus 174 L~l~~n~~~~--l~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~l~~l~~l~~~-------------------------~ 224 (378)
|++++|.++. ++..+..+++|+.|++++ .+. .++.....++.++.+.+. .
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 6666666542 222345566666666652 222 121111222222222221 1
Q ss_pred cCCCCceeccCCcccc-cccccc-CCcCcceeecc----cccCCcCCCC--CC-CcccccccccccccCCC--Cc-----
Q psy9862 225 MDFNPWLVLRENDLIE-IPKELG-NLSRLRELHIQ----ANRLTVLPPE--IG-NLDLASHKSVLKMDFNP--WV----- 288 (378)
Q Consensus 225 ~~~~~~l~l~~~~l~~-l~~~l~-~~~~L~~L~l~----~n~l~~~~~~--~~-~l~~~~~l~~l~l~~~~--~~----- 288 (378)
+..++.+++..+.++. .+..+. .+++|++|+++ .+.++..|.. +. .+..+++|+.++++.+. +.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 2334446665555542 222233 36777777775 4455543321 10 02235677777775432 22
Q ss_pred ---cCccchhhhhccCcccc--ccchhhcCCCCCCEEEeecCCCC--cCChhhccCCCccCcceeeccCCCCCccchHHh
Q psy9862 289 ---TPIADQLQLVLRENDLI--EIPKELGNLSRLRELHIQANRLT--VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL 361 (378)
Q Consensus 289 ---~~~~~l~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~ 361 (378)
..+++++.|++++|.++ .++..+..+++|++|++++|.++ +++..+..+ ++|++|++++|++++...+.+
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL---PSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC---SSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc---CccCeeECcCCcCCHHHHHHH
Confidence 24678999999999987 45566788999999999999987 344444445 489999999999988765555
Q ss_pred hh
Q psy9862 362 QV 363 (378)
Q Consensus 362 ~~ 363 (378)
..
T Consensus 534 ~~ 535 (592)
T 3ogk_B 534 QM 535 (592)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.4e-21 Score=178.44 Aligned_cols=154 Identities=23% Similarity=0.252 Sum_probs=76.5
Q ss_pred eeeccCCcccCcCcccccccc-cccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 33 LELADKGLSSFEELPGLMNML-YITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 33 L~l~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
++++.+.+++ .++.+...+ +|++|++++|.+++.....+.+.+.+++ . +++ ++++++|.++
T Consensus 3 ~~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~--------------~L~-~L~Ls~N~l~ 64 (362)
T 3goz_A 3 YKLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP-A--------------SVT-SLNLSGNSLG 64 (362)
T ss_dssp EECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC-T--------------TCC-EEECCSSCGG
T ss_pred cccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC-C--------------cee-EEECcCCCCC
Confidence 3455555554 334444333 3666666666666544444444443322 0 233 5555555555
Q ss_pred cCC-CCCCCC-----CcccEEEccCCCCCCCCCCcc----cccC-ccccEEecCCCCCccCCc-c----ccC-CCCCcEE
Q psy9862 112 SLP-RGFGAF-----PVLEVLDLTYNNLNEQSLPGN----FFML-ETLRALYLGDNDFEVLPA-E----IGN-LKNLQIL 174 (378)
Q Consensus 112 ~~~-~~~~~~-----~~L~~L~l~~n~i~~~~~~~~----l~~l-~~L~~L~l~~n~l~~l~~-~----l~~-l~~L~~L 174 (378)
... ..+..+ ++|++|++++|.+.+ ..+.. +..+ ++|++|++++|.++..+. . +.. ..+|++|
T Consensus 65 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 65 FKNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred HHHHHHHHHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 322 113222 566666666666654 11221 2233 566666666666653322 1 222 2466666
Q ss_pred ecCCCCCc-----cCChhhcCCC-CCcEEeccCCcCc
Q psy9862 175 VLRENDLI-----EIPKELGNLT-RLRELHIQANRLT 205 (378)
Q Consensus 175 ~l~~n~~~-----~l~~~l~~l~-~L~~L~l~~~~l~ 205 (378)
++++|.++ .++..+...+ +|++|++++|.++
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 66666665 2233344444 6666666666665
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.4e-19 Score=173.11 Aligned_cols=193 Identities=26% Similarity=0.350 Sum_probs=145.4
Q ss_pred cchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecC
Q psy9862 98 FLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~ 177 (378)
+++ .+++++|.++.+|..+. ++|++|++++|.+.. +| ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 60 ~L~-~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFS-ELQLNRLNLSSLPDNLP--PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCS-EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred Ccc-EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 566 88999999988887653 789999999999884 45 346889999999999988877 544 89999999
Q ss_pred CCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecc
Q psy9862 178 ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQ 257 (378)
Q Consensus 178 ~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~ 257 (378)
+|.++.+|. .+++|+.|++++|.++.+|. .+ ..++.+++++|.++.+|. +. ++|+.|+++
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l-----------~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LP-----------TSLEVLSVRNNQLTFLPE-LP--ESLEALDVS 188 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CC-----------TTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cC-----------CCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence 999988876 67889999999998887765 12 223348888888888877 54 888888888
Q ss_pred cccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCC-cCChhhcc
Q psy9862 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT-VLPPEIGN 336 (378)
Q Consensus 258 ~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~ 336 (378)
+|.++.+|. +.. + +....+.++.|++++|.++.+|..+..+++|++|++++|+++ .+|..+..
T Consensus 189 ~N~L~~lp~-~~~-----~----------L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 189 TNLLESLPA-VPV-----R----------NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCSSCCC-CC-----------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCCCchhh-HHH-----h----------hhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 888887775 321 1 112233447788888888888888877888888888888887 56666655
Q ss_pred C
Q psy9862 337 L 337 (378)
Q Consensus 337 l 337 (378)
+
T Consensus 253 l 253 (571)
T 3cvr_A 253 Q 253 (571)
T ss_dssp H
T ss_pred h
Confidence 4
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=162.89 Aligned_cols=228 Identities=19% Similarity=0.138 Sum_probs=157.2
Q ss_pred hhccCCceeeccCCcccCc--CcccccccccccEEEcccccccCchhHHHHhhc--cccccCCccccCCCCCCCCccchh
Q psy9862 26 KEIKNPELELADKGLSSFE--ELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL--SNSKYNYIPILHVTSLPILPFLFL 101 (378)
Q Consensus 26 ~~~~l~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l--~~l~~~~l~~l~l~~~~~~~~l~~ 101 (378)
+..+++.+++.++.+.... .+.....+++|++|++++|.+.+ ..|..+ .. +++++
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~----------------~~~L~- 120 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TMPPLPLEAT----------------GLALS- 120 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CCCCCSSSCC----------------CBCCS-
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc----chhhhhhhcc----------------CCCCC-
Confidence 3445777888877775311 12233356778888888888876 333332 22 33566
Q ss_pred ccccCCcccccC-C----CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc---C--CccccCCCCC
Q psy9862 102 QFPCRMNRLSSL-P----RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV---L--PAEIGNLKNL 171 (378)
Q Consensus 102 ~l~l~~~~l~~~-~----~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~---l--~~~l~~l~~L 171 (378)
++++++|.++.. + ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|++.. + +..++.+++|
T Consensus 121 ~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 121 SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 888888887742 2 124567888889998888875 335667788888999998888652 2 2224677888
Q ss_pred cEEecCCCCCccCChh----hcCCCCCcEEeccCCcCccc-CcccccccccccccccccCCCCceeccCCcccccccccc
Q psy9862 172 QILVLRENDLIEIPKE----LGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELG 246 (378)
Q Consensus 172 ~~L~l~~n~~~~l~~~----l~~l~~L~~L~l~~~~l~~~-~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~ 246 (378)
++|++++|.++.++.. +..+++|++|++++|.++.. |+.+..+... ..++.+++++|.++.+|..+.
T Consensus 200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~--------~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS--------SALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC--------TTCCCEECCSSCCCSCCSCCC
T ss_pred CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc--------CcCCEEECCCCCCCchhhhhc
Confidence 8899998888765442 46778889999998888855 6555544211 233448888888888887664
Q ss_pred CCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCcc
Q psy9862 247 NLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289 (378)
Q Consensus 247 ~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~ 289 (378)
++|++|++++|.++.+|. + ..+++|+.+++++|++..
T Consensus 272 --~~L~~L~Ls~N~l~~~~~-~---~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRAPQ-P---DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSCCC-T---TSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCCch-h---hhCCCccEEECcCCCCCC
Confidence 789999999999887754 2 445788888999888754
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.1e-19 Score=174.55 Aligned_cols=186 Identities=27% Similarity=0.376 Sum_probs=150.7
Q ss_pred cccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccC
Q psy9862 122 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQA 201 (378)
Q Consensus 122 ~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~ 201 (378)
++++|++++|.+.+ +|..+ .++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 78999999999985 56544 378999999999999888 457899999999999999887 654 899999999
Q ss_pred CcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccccccccccc
Q psy9862 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281 (378)
Q Consensus 202 ~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~ 281 (378)
|.++.+|. .+. .++.+++++|.++.+|. .+++|++|++++|.++.+|. +.
T Consensus 130 N~l~~lp~---~l~-----------~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~------------ 179 (571)
T 3cvr_A 130 NQLTMLPE---LPA-----------LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP------------ 179 (571)
T ss_dssp SCCSCCCC---CCT-----------TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC------------
T ss_pred CcCCCCCC---cCc-----------cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh------------
Confidence 99988775 222 33448999999998886 57899999999999988776 31
Q ss_pred ccCCCCccCccchhhhhccCccccccchhhcCCCCC-------CEEEeecCCCCcCChhhccCCCccCcceeeccCCCCC
Q psy9862 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRL-------RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 354 (378)
Q Consensus 282 l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~ 354 (378)
++++.|++++|.++.+|. +.. +| ++|++++|+|+.+|..+..++ +|++|++++|+++
T Consensus 180 ----------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~---~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 ----------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD---PTCTIILEDNPLS 243 (571)
T ss_dssp ----------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC---TTEEEECCSSSCC
T ss_pred ----------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC---CCCEEEeeCCcCC
Confidence 355567777777777776 443 66 999999999999998887655 9999999999999
Q ss_pred ccchHHhhh
Q psy9862 355 TPIADQLQV 363 (378)
Q Consensus 355 ~~~~~~~~~ 363 (378)
+.+|+.+..
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 999888765
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.3e-19 Score=157.73 Aligned_cols=193 Identities=18% Similarity=0.275 Sum_probs=156.7
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCC-CCCCCCCcccccCccccEEecCC-CCCccCC-ccccCCCCCcE
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNN-LNEQSLPGNFFMLETLRALYLGD-NDFEVLP-AEIGNLKNLQI 173 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~l~~L~~L~l~~-n~l~~l~-~~l~~l~~L~~ 173 (378)
+++ ++++++|+++.++.. |.++++|++|++++|. +.. ..+..+.++++|++|++++ |.++.++ ..+..+++|++
T Consensus 32 ~l~-~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQ-TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCC-EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred ccc-EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 455 899999999988774 8999999999999997 775 2245788999999999998 9998776 46789999999
Q ss_pred EecCCCCCccCChhhcCCCCCc---EEeccCC-cCcccCcc-cccccccc-cccccccCCCCceeccCCccccccccccC
Q psy9862 174 LVLRENDLIEIPKELGNLTRLR---ELHIQAN-RLTVLPPE-IGNLDLAS-HKSVLKMDFNPWLVLRENDLIEIPKELGN 247 (378)
Q Consensus 174 L~l~~n~~~~l~~~l~~l~~L~---~L~l~~~-~l~~~~~~-~~~l~~l~-~l~~~~~~~~~~l~l~~~~l~~l~~~l~~ 247 (378)
|++++|.++.+|. +..+++|+ +|++++| .++.++.. +..+..++ . +++++|.++.+|.....
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~-----------L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT-----------LKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE-----------EECCSCCCCEECTTTTT
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE-----------EEcCCCCCcccCHhhcC
Confidence 9999999999886 88888888 9999999 89877653 55555444 3 88999999988876555
Q ss_pred CcCcceeeccccc-CCcCCCCCCCcccccccccccccCCCCccCc-cchhhhhccCccccccchhhcCCCCCCEEEeecC
Q psy9862 248 LSRLRELHIQANR-LTVLPPEIGNLDLASHKSVLKMDFNPWVTPI-ADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN 325 (378)
Q Consensus 248 ~~~L~~L~l~~n~-l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~-~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n 325 (378)
.++|++|++++|. ++.++... .+.. ++++.|++++|.++.+|.. .+++|++|+++++
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~-------------------~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDA-------------------FGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTT-------------------TTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcccCCHHH-------------------hhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 5899999999995 88776532 1233 5677888888888888765 6789999999876
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.1e-20 Score=170.08 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=148.3
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCc-cCCccccCCCCCcEEecCCC-
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQILVLREN- 179 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n- 179 (378)
.+++.+|.+...+..+..+++|++|++++|.+.+..++..+..+++|++|++++|.++ ..+..++.+++|++|++++|
T Consensus 74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 6777777777655556677888888888888764224556777888888888888776 45566777888888888888
Q ss_pred CCc--cCChhhcCCCCCcEEeccCC-cCcc--cCccccccc-ccccccccccCCCCceeccCCc--c--ccccccccCCc
Q psy9862 180 DLI--EIPKELGNLTRLRELHIQAN-RLTV--LPPEIGNLD-LASHKSVLKMDFNPWLVLREND--L--IEIPKELGNLS 249 (378)
Q Consensus 180 ~~~--~l~~~l~~l~~L~~L~l~~~-~l~~--~~~~~~~l~-~l~~l~~~~~~~~~~l~l~~~~--l--~~l~~~l~~~~ 249 (378)
.++ .++..+..+++|++|++++| .++. ++..+..++ .++ .+++++|. + ..++..+..++
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-----------~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-----------QLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-----------EEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-----------EEEeCCCcccCCHHHHHHHHhhCC
Confidence 566 35656777888888888888 7762 444444444 333 37777774 3 35666677888
Q ss_pred Ccceeeccccc-CC-cCCCCCCCcccccccccccccCCCCccCccchhhhhccCcc-cc-ccchhhcCCCCCCEEEeecC
Q psy9862 250 RLRELHIQANR-LT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLREND-LI-EIPKELGNLSRLRELHIQAN 325 (378)
Q Consensus 250 ~L~~L~l~~n~-l~-~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l~~n 325 (378)
+|++|++++|. ++ ..+..+ .. .++++.|++++|. ++ .....+..+++|++|++++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l---~~-----------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEF---FQ-----------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGG---GG-----------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHH---hC-----------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 89999998887 44 333322 22 2344455555553 21 11224667888999999988
Q ss_pred CCCcCChhhccCCCccCcceeeccCCCCCccchHHhh
Q psy9862 326 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 326 ~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
++. ..+..+. ..+..|++++|.+++..|+.+.
T Consensus 283 -i~~--~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPD--GTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -SCT--TCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred -cCH--HHHHHHH--hhCcceEEecccCccccCCccc
Confidence 441 1122221 2466677888988888877654
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.4e-18 Score=154.31 Aligned_cols=174 Identities=21% Similarity=0.377 Sum_probs=105.7
Q ss_pred CCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEE
Q psy9862 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLREL 197 (378)
Q Consensus 118 ~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L 197 (378)
..+++|++|++++|.+.. + ..+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCccc--C-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEE
Confidence 345566666666666654 2 235556666666666666665544 566666666666666666554 36666666666
Q ss_pred eccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccccccc
Q psy9862 198 HIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHK 277 (378)
Q Consensus 198 ~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l 277 (378)
++++|.++.++ .+..++. ++.+++++|.++.+ ..+..+++|++|++++|.+..+++ + .
T Consensus 118 ~L~~n~i~~~~-~l~~l~~-----------L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l---~----- 175 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQ-----------LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-L---A----- 175 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTT-----------CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-G---T-----
T ss_pred ECCCCcCCCCh-hhcCCCC-----------CCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-h---c-----
Confidence 66666665542 2222222 22356666666555 346677777777777777765543 2 1
Q ss_pred ccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCC
Q psy9862 278 SVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 278 ~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
.+++++.|++++|.++.++. +..+++|+.|++++|+++..|
T Consensus 176 ------------~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 ------------GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ------------TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred ------------CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 23445566666666666653 777788888888888777544
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6.5e-18 Score=151.44 Aligned_cols=189 Identities=22% Similarity=0.323 Sum_probs=131.4
Q ss_pred ceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccc
Q psy9862 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS 111 (378)
Q Consensus 32 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~ 111 (378)
.+.+.+..+.. +.....+++|+.|++++|.+.+ + +.+.. +++++ .+++++|.++
T Consensus 28 ~~~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~-----~-~~~~~----------------l~~L~-~L~L~~n~l~ 81 (291)
T 1h6t_A 28 KDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS-----V-QGIQY----------------LPNVT-KLFLNGNKLT 81 (291)
T ss_dssp HHHTTCSCTTS---EECHHHHHTCCEEECTTSCCCC-----C-TTGGG----------------CTTCC-EEECCSSCCC
T ss_pred HHHhcCCCccc---ccchhhcCcccEEEccCCCccc-----C-hhHhc----------------CCCCC-EEEccCCccC
Confidence 34455555543 2344577788888888887764 1 11222 33556 7788888887
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCC
Q psy9862 112 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNL 191 (378)
Q Consensus 112 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l 191 (378)
.++. +..+++|++|++++|.+.+ ...+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+ ..+..+
T Consensus 82 ~~~~-l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l 155 (291)
T 1h6t_A 82 DIKP-LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRL 155 (291)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCC---GGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred CCcc-cccCCCCCEEECCCCcCCC---ChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccC
Confidence 7665 7778888888888888765 23477778888888888887766 3567778888888888888776 567778
Q ss_pred CCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCC
Q psy9862 192 TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 265 (378)
Q Consensus 192 ~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~ 265 (378)
++|+.|++++|.++.+++ +..++.++ .+++++|.++.++. +..+++|+.|++++|.+...|
T Consensus 156 ~~L~~L~L~~N~l~~~~~-l~~l~~L~-----------~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP-LAGLTKLQ-----------NLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCC-----------EEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCCEEEccCCccccchh-hcCCCccC-----------EEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 888888888888776554 44333333 37777787777754 778888999999988877544
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=3.7e-19 Score=164.69 Aligned_cols=162 Identities=24% Similarity=0.268 Sum_probs=120.5
Q ss_pred ccCCceeeccCCcccCcCc---ccccccc-cccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 28 IKNPELELADKGLSSFEEL---PGLMNML-YITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~~~---~~l~~~~-~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
.++++|++++|.++..+.. ..+..++ +|++|++++|.+++.++..+...+.... ++++ ++
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~---------------~~L~-~L 85 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP---------------ANVT-SL 85 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC---------------TTCC-EE
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC---------------CCcc-EE
Confidence 4499999999999875421 3455788 9999999999999866666666554431 2566 89
Q ss_pred ccCCcccccCCCC-----CCCC-CcccEEEccCCCCCCCCCCcc----ccc-CccccEEecCCCCCc-----cCCccccC
Q psy9862 104 PCRMNRLSSLPRG-----FGAF-PVLEVLDLTYNNLNEQSLPGN----FFM-LETLRALYLGDNDFE-----VLPAEIGN 167 (378)
Q Consensus 104 ~l~~~~l~~~~~~-----~~~~-~~L~~L~l~~n~i~~~~~~~~----l~~-l~~L~~L~l~~n~l~-----~l~~~l~~ 167 (378)
++++|.++..+.. +..+ ++|++|++++|.+.+.. +.. +.. .++|++|++++|.++ .++..+..
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 9999999854433 4445 79999999999997632 222 333 358999999999988 34455566
Q ss_pred CC-CCcEEecCCCCCccCC-----hhhcCC-CCCcEEeccCCcCcc
Q psy9862 168 LK-NLQILVLRENDLIEIP-----KELGNL-TRLRELHIQANRLTV 206 (378)
Q Consensus 168 l~-~L~~L~l~~n~~~~l~-----~~l~~l-~~L~~L~l~~~~l~~ 206 (378)
.+ +|++|++++|.++... ..+..+ ++|+.|++++|.++.
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 65 9999999999998553 245556 599999999998874
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=4.8e-17 Score=140.53 Aligned_cols=166 Identities=27% Similarity=0.422 Sum_probs=100.9
Q ss_pred ccEEecCCCCCccCCccccCCCCCcEEecCCCCCccC-ChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccC
Q psy9862 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEI-PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226 (378)
Q Consensus 148 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~ 226 (378)
-+.++.+++.++.+|..+. ++|++|++++|.+..+ +..+..+++|+.|++++|.++.++.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----------------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----------------- 81 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh-----------------
Confidence 3455555555555554332 5566666666666654 4445566666666666665544432
Q ss_pred CCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccc
Q psy9862 227 FNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIE 306 (378)
Q Consensus 227 ~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~ 306 (378)
..+..+++|+.|++++|.++.++... .+..++++.|++++|.++.
T Consensus 82 ----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~-------------------~~~l~~L~~L~Ls~N~l~~ 126 (229)
T 3e6j_A 82 ----------------GVFDSLTQLTVLDLGTNQLTVLPSAV-------------------FDRLVHLKELFMCCNKLTE 126 (229)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCCCCCTTT-------------------TTTCTTCCEEECCSSCCCS
T ss_pred ----------------hhcccCCCcCEEECCCCcCCccChhH-------------------hCcchhhCeEeccCCcccc
Confidence 11344555666666666555444321 1122344455566666666
Q ss_pred cchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 307 IPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 307 l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
+|..+..+++|++|++++|+|++++... +..+++|+++++.+|++.+.++ ....+..|++.
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c~-----~~~~l~~~~~~ 187 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWDCECR-----DIMYLRNWVAD 187 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBCTTBG-----GGHHHHHHHHH
T ss_pred cCcccccCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCccCCcc-----hhHHHHHHHHh
Confidence 6666778889999999999999887632 4455689999999999976653 35556666654
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.8e-19 Score=177.53 Aligned_cols=301 Identities=11% Similarity=-0.018 Sum_probs=181.7
Q ss_pred ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCC------------CCccchhccccCCcccccCC----
Q psy9862 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLP------------ILPFLFLQFPCRMNRLSSLP---- 114 (378)
Q Consensus 51 ~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~------------~~~~l~~~l~l~~~~l~~~~---- 114 (378)
.+++|++|++++|.+++.....+...+.+ . |+.+++..+. .+++++ +|++++|.++...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~---~-L~~L~L~~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARAD---D-LETLKLDKCSGFTTDGLLSIVTHCRKIK-TLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGG---G-CCEEEEESCEEEEHHHHHHHHHHCTTCS-EEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccc---c-CcEEECcCCCCcCHHHHHHHHhhCCCCC-EEECccccccCcchhHH
Confidence 67888888888887776444443332111 1 4455444332 257777 8888888765321
Q ss_pred -CCCCCCCcccEEEccCCCCCCC---CCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecC-------------
Q psy9862 115 -RGFGAFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR------------- 177 (378)
Q Consensus 115 -~~~~~~~~L~~L~l~~n~i~~~---~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~------------- 177 (378)
..+..++.|++|++++|.+.+. .++..+..+++|++|++++|.+..++..+..+++|++|+++
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 1234567888888888877621 12223456777888888877765555545555555555554
Q ss_pred --------------CCCCccCChhhcCCCCCcEEeccCCcCc--ccCcccccccccccccc-------------cccCCC
Q psy9862 178 --------------ENDLIEIPKELGNLTRLRELHIQANRLT--VLPPEIGNLDLASHKSV-------------LKMDFN 228 (378)
Q Consensus 178 --------------~n~~~~l~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~l~~l~~l~~-------------~~~~~~ 228 (378)
++....+|..+..+++|++|++++|.++ .+...+..+++++.+.+ ..+..+
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 4333345555667788899999888865 22233445555555433 234566
Q ss_pred Cceecc-----------CCccc--cccccccCCcCcceeecccccCC-cCCCCCCCccccccccccccc----CCCCcc-
Q psy9862 229 PWLVLR-----------ENDLI--EIPKELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMD----FNPWVT- 289 (378)
Q Consensus 229 ~~l~l~-----------~~~l~--~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~l~~~~~l~~l~l~----~~~~~~- 289 (378)
+.+++. .+.++ .++.....+++|++|++..+.++ ..+..+.. .+++|+.+++. .+.+.+
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT--YLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH--HCCSCCEEEEEECSCCSCCSSC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh--hCCCCcEEEEeecCCCccccCc
Confidence 777777 24444 23333456788888888777665 11111111 13556666664 444433
Q ss_pred -----------CccchhhhhccCcc--cc-ccchhh-cCCCCCCEEEeecCCCC--cCChhhccCCCccCcceeeccCCC
Q psy9862 290 -----------PIADQLQLVLREND--LI-EIPKEL-GNLSRLRELHIQANRLT--VLPPEIGNLDLASHKSVLKMDFNP 352 (378)
Q Consensus 290 -----------~~~~l~~L~l~~n~--l~-~l~~~l-~~~~~L~~L~l~~n~l~--~~~~~~~~l~~~~~l~~l~l~~n~ 352 (378)
.+++++.|+++.|. ++ ..+..+ ..+++|++|++++|+++ +++..+..+ ++|++|++++|+
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~l~~n~ 499 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC---PNLQKLEMRGCC 499 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC---TTCCEEEEESCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC---cccCeeeccCCC
Confidence 36678888886433 44 223333 45889999999999988 344444444 599999999999
Q ss_pred CCccchHHh
Q psy9862 353 WVTPIADQL 361 (378)
Q Consensus 353 ~~~~~~~~~ 361 (378)
+++..++.+
T Consensus 500 l~~~~~~~~ 508 (592)
T 3ogk_B 500 FSERAIAAA 508 (592)
T ss_dssp CBHHHHHHH
T ss_pred CcHHHHHHH
Confidence 876655544
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=4.1e-17 Score=143.05 Aligned_cols=175 Identities=27% Similarity=0.412 Sum_probs=96.2
Q ss_pred CCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcc
Q psy9862 30 NPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNR 109 (378)
Q Consensus 30 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~ 109 (378)
.++++++++.++.++ +.+. ++++.|++++|.+.+ ..+..+.+ +++++ ++++++|.
T Consensus 16 ~~~l~~~~~~l~~~p--~~~~--~~l~~L~L~~n~l~~----~~~~~~~~----------------l~~L~-~L~L~~n~ 70 (251)
T 3m19_A 16 KKEVDCQGKSLDSVP--SGIP--ADTEKLDLQSTGLAT----LSDATFRG----------------LTKLT-WLNLDYNQ 70 (251)
T ss_dssp GTEEECTTCCCSSCC--SCCC--TTCCEEECTTSCCCC----CCTTTTTT----------------CTTCC-EEECTTSC
T ss_pred CeEEecCCCCccccC--CCCC--CCCCEEEccCCCcCc----cCHhHhcC----------------cccCC-EEECCCCc
Confidence 345677777666544 2222 467777777776654 11111211 22444 55566666
Q ss_pred cccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCCCccCCh-
Q psy9862 110 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLRENDLIEIPK- 186 (378)
Q Consensus 110 l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~~~l~~- 186 (378)
++.++.. |..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 5544433 5555666666666666554 2233445555666666666655544432 3455556666666665555543
Q ss_pred hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCc
Q psy9862 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 263 (378)
Q Consensus 187 ~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~ 263 (378)
.+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPH---------------------------------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT---------------------------------TTTTTCTTCCEEECCSCCBCT
T ss_pred HcCcCcCCCEEECCCCcCCccCH---------------------------------HHHhCCCCCCEEEeeCCceeC
Confidence 35555555555555555543332 235677888888888887763
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=7.2e-17 Score=137.26 Aligned_cols=176 Identities=28% Similarity=0.441 Sum_probs=132.4
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 180 (378)
.+++.++.++.+|..+ .+++++|++++|.+.. ..+..+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 6777888888887654 3688999999999875 3344577888999999999988877654 5788889999999998
Q ss_pred CccCChh-hcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 181 LIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 181 ~~~l~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
++.++.. +..+++|++|++++|.++.++. ..+..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD---------------------------------GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCSS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCH---------------------------------hHhccCCcCCEEECCCC
Confidence 8877554 6788888888888888775543 12456788888888888
Q ss_pred cCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCcccc-ccchhhcCCC
Q psy9862 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLI-EIPKELGNLS 315 (378)
Q Consensus 260 ~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~-~l~~~l~~~~ 315 (378)
.++.++... +..+++|+.+++++|++.+.++.++.|+++.|.++ .+|.+++.++
T Consensus 135 ~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 135 QLKSVPDGV--FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCSCCCTTT--TTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccceeCHHH--hccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 888766532 34456777888888888777777888888877776 6666665544
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=4.9e-17 Score=139.56 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=44.9
Q ss_pred hhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 309 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 309 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
.++..+++|++|++++|+|++++... +..+++|+++++++|+|.+. +...++.+|++..
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~c~------c~l~~l~~~l~~~ 180 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPFICD------CHLKWLADYLHTN 180 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCEECS------GGGHHHHHHHHHC
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHH--HhCCCCCCEEEeCCCCcCCC------CccHHHHHHHHhC
Confidence 34677889999999999999887642 44455899999999999654 4567777887754
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3.4e-17 Score=150.79 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=125.6
Q ss_pred ccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccE-EecCCCCCccC-CccccCCCCCcEEecCC
Q psy9862 102 QFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA-LYLGDNDFEVL-PAEIGNLKNLQILVLRE 178 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~-L~l~~n~l~~l-~~~l~~l~~L~~L~l~~ 178 (378)
+|++++|+|+.+|.. |.++++|++|++++|.+....-+..|.+++++++ +.++.|+++.+ +..+..+++|++|++++
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 777777777777764 7777788888888877654222345667776655 44556777755 44567777788888877
Q ss_pred CCCccCCh-hhcCCCCCcEEeccC-CcCcccCcc-cccccccccccccccCCCCceeccCCccccccccccCCcCcceee
Q psy9862 179 NDLIEIPK-ELGNLTRLRELHIQA-NRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255 (378)
Q Consensus 179 n~~~~l~~-~l~~l~~L~~L~l~~-~~l~~~~~~-~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~ 255 (378)
|.+..++. .+.....+..+++.+ +.++.++.. +..+. ..+..+++++|.++.++.......+|++++
T Consensus 114 n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----------FESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----------SSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred cccccCCchhhcccchhhhhhhccccccccccccchhhcc----------hhhhhhccccccccCCChhhccccchhHHh
Confidence 77776643 344555666676654 345544431 11111 012236777777777776666667777777
Q ss_pred ccc-ccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecC-CCCcCChh
Q psy9862 256 IQA-NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN-RLTVLPPE 333 (378)
Q Consensus 256 l~~-n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~ 333 (378)
+.+ |.++.+|... +. ..++++.|++++|+++.+|.. .+.+|++|.+.++ +++.+|.
T Consensus 184 l~~~n~l~~i~~~~--f~-----------------~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 184 LSDNNNLEELPNDV--FH-----------------GASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CTTCTTCCCCCTTT--TT-----------------TEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred hccCCcccCCCHHH--hc-----------------cCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence 764 5666666532 22 334455566666666666542 2445555555444 4555553
Q ss_pred hccCCCccCcceeecc
Q psy9862 334 IGNLDLASHKSVLKMD 349 (378)
Q Consensus 334 ~~~l~~~~~l~~l~l~ 349 (378)
+..+++|+.+++.
T Consensus 242 ---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 ---LEKLVALMEASLT 254 (350)
T ss_dssp ---TTTCCSCCEEECS
T ss_pred ---chhCcChhhCcCC
Confidence 2333455665554
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=7.6e-19 Score=173.16 Aligned_cols=189 Identities=12% Similarity=0.020 Sum_probs=105.4
Q ss_pred CCCCCcEEecCCCCCcc--CChhhcCCCCCcEEeccCCcCc--ccCccccccccccccccc-------------------
Q psy9862 167 NLKNLQILVLRENDLIE--IPKELGNLTRLRELHIQANRLT--VLPPEIGNLDLASHKSVL------------------- 223 (378)
Q Consensus 167 ~l~~L~~L~l~~n~~~~--l~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~l~~l~~l~~~------------------- 223 (378)
.+++|++|++++|.++. +...+..+++|+.|++++| ++ .++.....++.++.+.+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 34667777777766542 2223456667777777666 32 122111223333333221
Q ss_pred ----ccCCCCceeccCCccccc-cccc-cCCcCcceeecc--c----ccCCcCCC--CCCC-cccccccccccccCCCCc
Q psy9862 224 ----KMDFNPWLVLRENDLIEI-PKEL-GNLSRLRELHIQ--A----NRLTVLPP--EIGN-LDLASHKSVLKMDFNPWV 288 (378)
Q Consensus 224 ----~~~~~~~l~l~~~~l~~l-~~~l-~~~~~L~~L~l~--~----n~l~~~~~--~~~~-l~~~~~l~~l~l~~~~~~ 288 (378)
.+..++.+.+..+.++.. ...+ ..+++|++|+++ + +.++..|. .+.. +..+++|+.+++.+ .+.
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 133444555555555421 1222 246788888887 3 34443321 1100 23346677777766 332
Q ss_pred c--------CccchhhhhccCccccc-cchhh-cCCCCCCEEEeecCCCCc--CChhhccCCCccCcceeeccCCCCCcc
Q psy9862 289 T--------PIADQLQLVLRENDLIE-IPKEL-GNLSRLRELHIQANRLTV--LPPEIGNLDLASHKSVLKMDFNPWVTP 356 (378)
Q Consensus 289 ~--------~~~~l~~L~l~~n~l~~-l~~~l-~~~~~L~~L~l~~n~l~~--~~~~~~~l~~~~~l~~l~l~~n~~~~~ 356 (378)
. ..++++.|++++|.++. .+..+ ..+++|++|++++|.++. +...+ ..+++|++|++++|+++..
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA---SKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG---GGGGGSSEEEEESSCCBHH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH---HhCCCCCEEeeeCCCCCHH
Confidence 2 26678899999998862 22333 668999999999998862 22222 2345999999999998554
Q ss_pred chHH
Q psy9862 357 IADQ 360 (378)
Q Consensus 357 ~~~~ 360 (378)
..+.
T Consensus 522 ~~~~ 525 (594)
T 2p1m_B 522 ACKL 525 (594)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=2.3e-19 Score=167.62 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=136.7
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCC---CCcccccCccccEEecCCCCCcc----CCcc-------ccCCCCCcEEecC
Q psy9862 112 SLPRGFGAFPVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDNDFEV----LPAE-------IGNLKNLQILVLR 177 (378)
Q Consensus 112 ~~~~~~~~~~~L~~L~l~~n~i~~~~---~~~~l~~l~~L~~L~l~~n~l~~----l~~~-------l~~l~~L~~L~l~ 177 (378)
.++..+..+++|++|++++|.+.+.. ++..+..+++|++|++++|.+.. +|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 44444555666777777777665411 11224456677777777664432 2222 2566777777777
Q ss_pred CCCCcc-----CChhhcCCCCCcEEeccCCcCccc-Cccccc-cccccccc-ccccCCCCceeccCCccc--ccc---cc
Q psy9862 178 ENDLIE-----IPKELGNLTRLRELHIQANRLTVL-PPEIGN-LDLASHKS-VLKMDFNPWLVLRENDLI--EIP---KE 244 (378)
Q Consensus 178 ~n~~~~-----l~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~-l~~l~~l~-~~~~~~~~~l~l~~~~l~--~l~---~~ 244 (378)
+|.++. ++..+..+++|++|++++|.++.. +..+.. +..+.... ......++.+++++|.++ .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777764 455667777777777777776521 111111 00000000 000023334666666664 233 45
Q ss_pred ccCCcCcceeecccccCC--cCCCCCC-CcccccccccccccCCCCccCccchhhhhccCccc-----cccchhhcCCCC
Q psy9862 245 LGNLSRLRELHIQANRLT--VLPPEIG-NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDL-----IEIPKELGNLSR 316 (378)
Q Consensus 245 l~~~~~L~~L~l~~n~l~--~~~~~~~-~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l-----~~l~~~l~~~~~ 316 (378)
+..+++|++|++++|.+. .+...+. . ....++++.|++++|.+ ..+|..+..+++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-----------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG-----------------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTT-----------------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHH-----------------hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 667788889999888776 1110000 1 12345666777888887 467888899999
Q ss_pred CCEEEeecCCCCcC-----ChhhccCCCccCcceeeccCCCCCcc----chHHh
Q psy9862 317 LRELHIQANRLTVL-----PPEIGNLDLASHKSVLKMDFNPWVTP----IADQL 361 (378)
Q Consensus 317 L~~L~l~~n~l~~~-----~~~~~~l~~~~~l~~l~l~~n~~~~~----~~~~~ 361 (378)
|++|++++|.++.. +..+.. ..+++|++|++++|.+++. +|+.+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~-~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSK-LENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHT-CSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhh-ccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 99999999999843 333321 1256999999999999883 55544
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=3.4e-18 Score=156.41 Aligned_cols=218 Identities=15% Similarity=0.113 Sum_probs=135.8
Q ss_pred cCCceeeccCCcccCcCccccccc--ccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 29 KNPELELADKGLSSFEELPGLMNM--LYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
..+.++++++.+.. ..+..+ ++++.|++++|.+.+ ..+. + ..+++++ +++++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~----~~~~-~----------------~~~~~L~-~L~L~ 101 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQ----PLAE-H----------------FSPFRVQ-HMDLS 101 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECS----CCCS-C----------------CCCBCCC-EEECT
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccc----cchh-h----------------ccCCCCC-EEEcc
Confidence 36677777776652 233444 677777777777765 1111 1 1134556 77777
Q ss_pred Cccccc--CCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCC-CCc--cCCccccCCCCCcEEecCCC-C
Q psy9862 107 MNRLSS--LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-DFE--VLPAEIGNLKNLQILVLREN-D 180 (378)
Q Consensus 107 ~~~l~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~ 180 (378)
+|.++. ++..+..+++|++|++++|.+.+ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 777662 55556677777777777777654 33455666777777777777 555 35555666777777777777 6
Q ss_pred Ccc--CChhhcCCC-CCcEEeccCCc--Cc--ccCcccccccccccccccccCCCCceeccCCc-cc-cccccccCCcCc
Q psy9862 181 LIE--IPKELGNLT-RLRELHIQANR--LT--VLPPEIGNLDLASHKSVLKMDFNPWLVLREND-LI-EIPKELGNLSRL 251 (378)
Q Consensus 181 ~~~--l~~~l~~l~-~L~~L~l~~~~--l~--~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~-l~-~l~~~l~~~~~L 251 (378)
++. ++..+..++ +|++|++++|. ++ .++..+..++.++ .+++++|. ++ ..+..+..+++|
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~-----------~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-----------HLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS-----------EEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC-----------EEeCCCCCcCCHHHHHHHhCCCCC
Confidence 663 455566777 77777777773 33 3444333333333 37777776 43 445567777888
Q ss_pred ceeecccccCCcCCCCCCCcccccccccccccCC
Q psy9862 252 RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285 (378)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~ 285 (378)
++|++++|. ...+..+..+..+++|+.++++++
T Consensus 250 ~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 888888875 222233334555677788888776
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.5e-17 Score=161.62 Aligned_cols=172 Identities=25% Similarity=0.391 Sum_probs=89.0
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEe
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILV 175 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 175 (378)
++.++ .|++++|.+..++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+..++ .+..+++|++|+
T Consensus 42 L~~L~-~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSID-QIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCC-CCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCC-EEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 44444 5555555555444 24555555555555555543 122 445555555555555555443 344555555555
Q ss_pred cCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceee
Q psy9862 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255 (378)
Q Consensus 176 l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~ 255 (378)
+++|.+..++ .+..+++|+.|++++|.++ .+ ..+..+++|+.|+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~----------------------------------~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKIT----------------------------------DI-TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCC----------------------------------CC-GGGGSCTTCSEEE
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccC----------------------------------Cc-hhhcccCCCCEEE
Confidence 5555555442 3445555555555555444 33 2345556666666
Q ss_pred cccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCC
Q psy9862 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331 (378)
Q Consensus 256 l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~ 331 (378)
+++|.+..+++ +. .+++|+.|++++|.++.++ .+..+++|+.|+|++|++...|
T Consensus 160 Ls~N~l~~~~~-l~--------------------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 160 LEDNQISDIVP-LA--------------------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCSSCCCCCGG-GT--------------------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCcCCCchh-hc--------------------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 66666554433 11 1234445555555555553 3566677777777777666443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.3e-17 Score=145.57 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=73.9
Q ss_pred ccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEec
Q psy9862 97 PFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVL 176 (378)
Q Consensus 97 ~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 176 (378)
.++. .++++.+.++.++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|+++.++. +..+++|++|++
T Consensus 19 ~~l~-~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAV-KQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHH-HHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHH-HHHhcCCCccccc-chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3445 6777777777665 46677888888888888774 23 56777888888888888776665 777788888888
Q ss_pred CCCCCccCChhhcCCCCCcEEeccCCcCccc
Q psy9862 177 RENDLIEIPKELGNLTRLRELHIQANRLTVL 207 (378)
Q Consensus 177 ~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 207 (378)
++|.++.++.. .. ++|+.|++++|.++.+
T Consensus 93 ~~N~l~~l~~~-~~-~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 93 NRNRLKNLNGI-PS-ACLSRLFLDNNELRDT 121 (263)
T ss_dssp CSSCCSCCTTC-CC-SSCCEEECCSSCCSBS
T ss_pred CCCccCCcCcc-cc-CcccEEEccCCccCCC
Confidence 88887776542 22 7777777777777654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.6e-16 Score=146.78 Aligned_cols=178 Identities=24% Similarity=0.374 Sum_probs=120.4
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccc-cCccccEEecCCCCCccCC-ccccCCCCCcEEecCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLREN 179 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~-~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n 179 (378)
.++++++.++.+|..+. ..+++|++++|.+... .+..+. ++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 67777788877776543 4577888888887752 234454 6777888888888777554 35677777777777777
Q ss_pred CCccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeeccc
Q psy9862 180 DLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA 258 (378)
Q Consensus 180 ~~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~ 258 (378)
.++.++. .|..+++|+.|++++|.++.++ +..+..+++|++|++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~---------------------------------~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVD---------------------------------RNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEEC---------------------------------TTTTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEEC---------------------------------HHHhCCcccCCEEECCC
Confidence 7776643 4667777777777777665432 12355677788888887
Q ss_pred ccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChh-hccC
Q psy9862 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE-IGNL 337 (378)
Q Consensus 259 n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~l 337 (378)
|.+..+|..+. ..+..+++|++|++++|+|+.+|.. +..+
T Consensus 146 N~l~~l~~~~~---------------------------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 146 NQISRFPVELI---------------------------------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp SCCCSCCGGGT---------------------------------------C----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred CcCCeeCHHHh---------------------------------------cCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 77776654210 0014578999999999999988853 3344
Q ss_pred CCccC--cceeeccCCCCCccc
Q psy9862 338 DLASH--KSVLKMDFNPWVTPI 357 (378)
Q Consensus 338 ~~~~~--l~~l~l~~n~~~~~~ 357 (378)
+ . ++.+++.+|+|.+++
T Consensus 187 ~---~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 187 P---AWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp C---HHHHTTEECCSSCEECCH
T ss_pred c---HhhcceEEecCCCccCCc
Confidence 3 4 478999999997665
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=135.76 Aligned_cols=163 Identities=23% Similarity=0.384 Sum_probs=93.1
Q ss_pred cEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC--ccccCCCCCcEEecCCCCCccCCh-hhcCCCCCcEEecc
Q psy9862 124 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQ 200 (378)
Q Consensus 124 ~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~~~l~~-~l~~l~~L~~L~l~ 200 (378)
++++++++.++. +|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++.++. .|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~--iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc--CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 355666666553 33332 223456666666555432 224555555555555555554432 45555555555555
Q ss_pred CCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccc
Q psy9862 201 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280 (378)
Q Consensus 201 ~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l 280 (378)
+|.++.++. ..+..+++|++|++++|.+..++
T Consensus 90 ~N~l~~~~~---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~--------------- 121 (220)
T 2v70_A 90 SNRLENVQH---------------------------------KMFKGLESLKTLMLRSNRITCVG--------------- 121 (220)
T ss_dssp SSCCCCCCG---------------------------------GGGTTCSSCCEEECTTSCCCCBC---------------
T ss_pred CCccCccCH---------------------------------hHhcCCcCCCEEECCCCcCCeEC---------------
Confidence 555543331 12455666666666666655443
Q ss_pred cccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCCh-hhccCCCccCcceeeccCCCCCccchH
Q psy9862 281 KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWVTPIAD 359 (378)
Q Consensus 281 ~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~l~~~~~l~~l~l~~n~~~~~~~~ 359 (378)
|..+..+++|++|++++|+|+++++ .+. .+++|+++++++|+|.+.++
T Consensus 122 ---------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~c~c~- 170 (220)
T 2v70_A 122 ---------------------------NDSFIGLSSVRLLSLYDNQITTVAPGAFD---TLHSLSTLNLLANPFNCNCY- 170 (220)
T ss_dssp ---------------------------TTSSTTCTTCSEEECTTSCCCCBCTTTTT---TCTTCCEEECCSCCEECSGG-
T ss_pred ---------------------------HhHcCCCccCCEEECCCCcCCEECHHHhc---CCCCCCEEEecCcCCcCCCc-
Confidence 2345667788888888888887643 333 34588888888888866543
Q ss_pred HhhhhhHHHHHHHhh
Q psy9862 360 QLQVGISHVLDYIRS 374 (378)
Q Consensus 360 ~~~~~~~~~~~~~~~ 374 (378)
..++.+|++.
T Consensus 171 -----l~~l~~~~~~ 180 (220)
T 2v70_A 171 -----LAWLGEWLRK 180 (220)
T ss_dssp -----GHHHHHHHHH
T ss_pred -----hHHHHHHHHh
Confidence 4455566654
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=2e-16 Score=134.56 Aligned_cols=174 Identities=22% Similarity=0.332 Sum_probs=124.3
Q ss_pred cEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCCCccCChh-hcCCCCCcEEeccC
Q psy9862 124 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQA 201 (378)
Q Consensus 124 ~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~~~l~~~-l~~l~~L~~L~l~~ 201 (378)
+.++.+++.+.. +|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 456777777764 34333 3578888888888776654 356777888888888887776543 57777888888877
Q ss_pred CcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCccccccccccc
Q psy9862 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281 (378)
Q Consensus 202 ~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~ 281 (378)
|.++.++. ..+..+++|++|++++|.+..++...
T Consensus 86 n~l~~~~~---------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~------------- 119 (208)
T 2o6s_A 86 NQLQSLPN---------------------------------GVFDKLTQLKELALNTNQLQSLPDGV------------- 119 (208)
T ss_dssp SCCCCCCT---------------------------------TTTTTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred CcCCccCH---------------------------------hHhcCccCCCEEEcCCCcCcccCHhH-------------
Confidence 77665442 22567889999999999998776542
Q ss_pred ccCCCCccCccchhhhhccCccccccchh-hcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHH
Q psy9862 282 MDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 360 (378)
Q Consensus 282 l~~~~~~~~~~~l~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~ 360 (378)
.+..++++.|++++|.++.++.. +..+++|++|++++|.+.+. + +.+++++++.|.++|.+|+.
T Consensus 120 ------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~---~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 120 ------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------C---PGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------T---TTTHHHHHHHHHCTTTBBCT
T ss_pred ------hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------C---CCHHHHHHHHHhCCceeecc
Confidence 12345666777888888777664 67788999999999976632 2 37888888888888888876
Q ss_pred hh
Q psy9862 361 LQ 362 (378)
Q Consensus 361 ~~ 362 (378)
+.
T Consensus 185 ~~ 186 (208)
T 2o6s_A 185 AG 186 (208)
T ss_dssp TS
T ss_pred Cc
Confidence 64
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1e-16 Score=157.28 Aligned_cols=145 Identities=23% Similarity=0.329 Sum_probs=71.8
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~ 181 (378)
.|++++|.++.++. +..+++|+.|++++|.+.+ +..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+
T Consensus 69 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 69 KLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC---ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc
Confidence 44555555444433 4445555555555555543 123444555555555555554432 244455555555555555
Q ss_pred ccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccC
Q psy9862 182 IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRL 261 (378)
Q Consensus 182 ~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l 261 (378)
+.+ ..+..+++|+.|++++|.++.+++ +..+..++ .|++++|.++.++ .+..+++|+.|++++|.+
T Consensus 144 ~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~-----------~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 144 TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ-----------NLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCC-----------EEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCC-----------EEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 544 344555555555555555543332 22222222 2555555555443 356667777777777766
Q ss_pred CcCC
Q psy9862 262 TVLP 265 (378)
Q Consensus 262 ~~~~ 265 (378)
...|
T Consensus 210 ~~~p 213 (605)
T 1m9s_A 210 LNKP 213 (605)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2e-17 Score=145.95 Aligned_cols=174 Identities=21% Similarity=0.266 Sum_probs=140.2
Q ss_pred CCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEe
Q psy9862 119 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELH 198 (378)
Q Consensus 119 ~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~ 198 (378)
.+..+..++++++.+.+ ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 45677888999999985 23 5788999999999999999887 68889999999999999999876 99999999999
Q ss_pred ccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccc
Q psy9862 199 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 278 (378)
Q Consensus 199 l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~ 278 (378)
+++|.++.++.... ..++.+++++|.++.++ .+..+++|+.|++++|.++.++ . +
T Consensus 92 L~~N~l~~l~~~~~-------------~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~---l------- 146 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-------------ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-M---L------- 146 (263)
T ss_dssp CCSSCCSCCTTCCC-------------SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-G---G-------
T ss_pred CCCCccCCcCcccc-------------CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-H---H-------
Confidence 99999987764221 23445889999998875 4888999999999999888664 2 2
Q ss_pred cccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCChh
Q psy9862 279 VLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333 (378)
Q Consensus 279 ~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 333 (378)
+.+++++.|++++|.++.+ ..+..+++|++|++++|.++..|..
T Consensus 147 ----------~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 147 ----------GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp ----------GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred ----------ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence 2334566777778877777 5688899999999999998866543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.1e-16 Score=147.27 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=73.5
Q ss_pred ccccCCcccc-cCCCC-CCCCCcccE-EEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecC
Q psy9862 102 QFPCRMNRLS-SLPRG-FGAFPVLEV-LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLR 177 (378)
Q Consensus 102 ~l~l~~~~l~-~~~~~-~~~~~~L~~-L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~ 177 (378)
+|++++|.+. .++.. |.+++.+++ +++.+|.+.. ..+..|..+++|++|++++|.+..++. .+.....+..+++.
T Consensus 58 ~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred EEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 4444444442 23322 444444433 3333444443 113344555555555555555544332 12233344445443
Q ss_pred C-CCCccCCh-hhcCCC-CCcEEeccCCcCcccCcccccccccccccccccCCCCceecc-CCccccccc-cccCCcCcc
Q psy9862 178 E-NDLIEIPK-ELGNLT-RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR-ENDLIEIPK-ELGNLSRLR 252 (378)
Q Consensus 178 ~-n~~~~l~~-~l~~l~-~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~-~~~l~~l~~-~l~~~~~L~ 252 (378)
+ +.+..++. .+..+. .++.|++++|.++.++........+.. +.+. .|.++.+|. .+..+++|+
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~-----------l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE-----------LNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE-----------EECTTCTTCCCCCTTTTTTEECCS
T ss_pred cccccccccccchhhcchhhhhhccccccccCCChhhccccchhH-----------HhhccCCcccCCCHHHhccCcccc
Confidence 3 33444432 233332 355555555555555444333332222 4443 345555554 356777788
Q ss_pred eeecccccCCcCCCC
Q psy9862 253 ELHIQANRLTVLPPE 267 (378)
Q Consensus 253 ~L~l~~n~l~~~~~~ 267 (378)
+|++++|+++.+|..
T Consensus 206 ~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 206 ILDISRTRIHSLPSY 220 (350)
T ss_dssp EEECTTSCCCCCCSS
T ss_pred hhhcCCCCcCccChh
Confidence 888888887777653
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.8e-16 Score=131.64 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=104.4
Q ss_pred CccchhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-CCccccCCCCCcEE
Q psy9862 96 LPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIL 174 (378)
Q Consensus 96 ~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L 174 (378)
+++++ .+++++|.++.++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.++. .+..++.+++|++|
T Consensus 43 l~~L~-~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLT-YITLANINVTDLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCC-EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCcc-EEeccCCCccChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44555 8888888888777 57888888888888887654 3467788888888888888874 56677888888888
Q ss_pred ecCCCCCcc-CChhhcCCCCCcEEeccCCc-CcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcc
Q psy9862 175 VLRENDLIE-IPKELGNLTRLRELHIQANR-LTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLR 252 (378)
Q Consensus 175 ~l~~n~~~~-l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~ 252 (378)
++++|.++. .+..+..+++|++|++++|. ++.++ .+..++.++ .+++++|.++.++ .+..+++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~-----------~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK-----------SLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC-----------EEECTTBCCCCCT-TGGGCSSCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC-----------EEECCCCCCcChH-HhccCCCCC
Confidence 888888874 46678888888888888887 66554 233333222 2666666666554 455666666
Q ss_pred eeecccccCC
Q psy9862 253 ELHIQANRLT 262 (378)
Q Consensus 253 ~L~l~~n~l~ 262 (378)
.|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6666666543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.3e-16 Score=130.71 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=77.7
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCc
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMN 108 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~ 108 (378)
+++.|+++++.+..+ +.+..+++|++|++++|.+.. ++.+.. +++++ ++++++|
T Consensus 45 ~L~~L~l~~n~i~~l---~~l~~l~~L~~L~l~~n~~~~------~~~l~~----------------l~~L~-~L~l~~n 98 (197)
T 4ezg_A 45 SLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATN------YNPISG----------------LSNLE-RLRIMGK 98 (197)
T ss_dssp TCCEEEEESSCCSCC---TTGGGCTTCSEEEEESCCCSC------CGGGTT----------------CTTCC-EEEEECT
T ss_pred CccEEeccCCCccCh---HHHhcCCCCCEEEccCCCCCc------chhhhc----------------CCCCC-EEEeECC
Confidence 456666666666532 245566666666666664432 111111 22444 5555556
Q ss_pred cccc-CCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-CccCCccccCCCCCcEEecCCCCCccCCh
Q psy9862 109 RLSS-LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEIGNLKNLQILVLRENDLIEIPK 186 (378)
Q Consensus 109 ~l~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~~~~l~~ 186 (378)
.++. .+..|..+++|++|++++|.+.+ ..+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCc-HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 5553 34445555666666666665554 223445555566666666665 44444 3555556666666666655554
Q ss_pred hhcCCCCCcEEeccCCcC
Q psy9862 187 ELGNLTRLRELHIQANRL 204 (378)
Q Consensus 187 ~l~~l~~L~~L~l~~~~l 204 (378)
.+..+++|+.|++++|.+
T Consensus 176 ~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TGGGCSSCCEEEECBC--
T ss_pred HhccCCCCCEEEeeCccc
Confidence 455555566666655554
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.4e-18 Score=165.97 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=92.6
Q ss_pred cCCceeeccCCcccCcCcccccccccccEEEcccccccCc---------hhHHHHhhccccccCCccccCCCCCCCCccc
Q psy9862 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGE---------IIVQVIKGLSNSKYNYIPILHVTSLPILPFL 99 (378)
Q Consensus 29 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~---------~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l 99 (378)
.++.|++++|.++.++ +.+.++++|+.|++++|..... .....|..+..++ . |+.++.-....+..+
T Consensus 350 ~L~~L~Ls~n~L~~Lp--~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~-L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQ--SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-T-LKAVDPMRAAYLDDL 425 (567)
T ss_dssp TSSSCCCCHHHHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-H-HHHHCGGGHHHHHHH
T ss_pred cceeccCChhhHHhhH--HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-h-cccCcchhhcccchh
Confidence 4566777777766433 4566777777777755531000 0001222222222 1 222110000011222
Q ss_pred hhccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCC
Q psy9862 100 FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREN 179 (378)
Q Consensus 100 ~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 179 (378)
. .+.+..|.++.++. ..|++|++++|.+.. +|. +..+++|+.|++++|.++.+|..++.+++|++|++++|
T Consensus 426 ~-~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 R-SKFLLENSVLKMEY-----ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp H-HHHHHHHHHHHHHH-----TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred h-hhhhhcccccccCc-----cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 2 33334444443332 246777777777764 344 67777777777777777777777777777777777777
Q ss_pred CCccCChhhcCCCCCcEEeccCCcCccc
Q psy9862 180 DLIEIPKELGNLTRLRELHIQANRLTVL 207 (378)
Q Consensus 180 ~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 207 (378)
.++.+| .+..+++|+.|++++|.++.+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence 777766 677777777777777777654
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.6e-17 Score=163.60 Aligned_cols=323 Identities=14% Similarity=0.084 Sum_probs=185.0
Q ss_pred ccCCceeeccCCcc-cCcC------------ccccc-ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCC
Q psy9862 28 IKNPELELADKGLS-SFEE------------LPGLM-NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSL 93 (378)
Q Consensus 28 ~~l~~L~l~~~~~~-~~~~------------~~~l~-~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~ 93 (378)
.+++.|+++++... .+.. ++.+. .+++|++|++++|.+++.....+...+. + |+.+++..+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~----~-L~~L~L~~~ 140 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK----N-FKVLVLSSC 140 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCT----T-CCEEEEESC
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCC----C-CcEEeCCCc
Confidence 34778888876522 1111 11222 6788888999888887755444443322 2 555555433
Q ss_pred C------------CCccchhccccCCccccc-----CCCCCCCCCcccEEEccCCC--CCCCCCCcccccCccccEEecC
Q psy9862 94 P------------ILPFLFLQFPCRMNRLSS-----LPRGFGAFPVLEVLDLTYNN--LNEQSLPGNFFMLETLRALYLG 154 (378)
Q Consensus 94 ~------------~~~~l~~~l~l~~~~l~~-----~~~~~~~~~~L~~L~l~~n~--i~~~~~~~~l~~l~~L~~L~l~ 154 (378)
. .+++++ +|++++|.++. ++.....+++|++|++++|. +....+...+..+++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLK-ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCC-EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCC-EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 1 267788 89999888763 22334467899999999887 2211111223456889999998
Q ss_pred CC-CCccCCccccCCCCCcEEecCCCCC-------------------------------ccCChhhcCCCCCcEEeccCC
Q psy9862 155 DN-DFEVLPAEIGNLKNLQILVLRENDL-------------------------------IEIPKELGNLTRLRELHIQAN 202 (378)
Q Consensus 155 ~n-~l~~l~~~l~~l~~L~~L~l~~n~~-------------------------------~~l~~~l~~l~~L~~L~l~~~ 202 (378)
+| .++.++..+..+++|++|+++.+.. ..++..+..+++|+.|++++|
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 88 3334555566667777777554421 123333345678889999888
Q ss_pred cCc--ccCccccccccccccccc-------------ccCCCCceeccC---------Cccc--cccccccCCcCcceeec
Q psy9862 203 RLT--VLPPEIGNLDLASHKSVL-------------KMDFNPWLVLRE---------NDLI--EIPKELGNLSRLRELHI 256 (378)
Q Consensus 203 ~l~--~~~~~~~~l~~l~~l~~~-------------~~~~~~~l~l~~---------~~l~--~l~~~l~~~~~L~~L~l 256 (378)
.++ .+...+..+++++.+.+. .+..++.+++.+ +.++ .+......+++|++|.+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 865 222223344444443322 134455555522 2332 11111223666777766
Q ss_pred ccccCCc-CCCCCCCccccccccccccc--C----CCCc------------cCccchhhhhccCcccc-ccchhhcC-CC
Q psy9862 257 QANRLTV-LPPEIGNLDLASHKSVLKMD--F----NPWV------------TPIADQLQLVLRENDLI-EIPKELGN-LS 315 (378)
Q Consensus 257 ~~n~l~~-~~~~~~~l~~~~~l~~l~l~--~----~~~~------------~~~~~l~~L~l~~n~l~-~l~~~l~~-~~ 315 (378)
..+.++. ....+. ..+++|+.+++. + +.+. ..+++++.|++++ .++ ..+..+.. ++
T Consensus 380 ~~~~l~~~~~~~l~--~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 380 FCRQMTNAALITIA--RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EESCCCHHHHHHHH--HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred hcCCcCHHHHHHHH--hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 6666551 111110 123566666666 2 2232 2346778888877 454 33334444 88
Q ss_pred CCCEEEeecCCCCc--CChhhccCCCccCcceeeccCCCCCccchHHhh
Q psy9862 316 RLRELHIQANRLTV--LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ 362 (378)
Q Consensus 316 ~L~~L~l~~n~l~~--~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~ 362 (378)
+|++|++++|.++. +...... +++|++|++++|++++..+..+.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHH---CTTCCEEEEESCSCCHHHHHHTG
T ss_pred hccEeeccCCCCcHHHHHHHHhc---CCCcCEEECcCCCCcHHHHHHHH
Confidence 99999999999872 2221233 45999999999999766655443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.5e-15 Score=128.79 Aligned_cols=152 Identities=32% Similarity=0.503 Sum_probs=107.3
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. ++|++|++++|.+.. ..+..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 67888888888887654 788999999999886 336678888899999999998887764 45788889999999998
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
++.++. .+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----------------------------------~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGI----------------------------------ERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG----------------------------------GGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCccc----------------------------------ccCCCCCEEECCCC
Confidence 887754 4678888888888888887666543 34445555555555
Q ss_pred cCCcCCCCCCCcccccccccccccCCCCccCcc
Q psy9862 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 292 (378)
Q Consensus 260 ~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~ 292 (378)
.+..++.. .+..+++|+.+++.+|++.+.++
T Consensus 146 ~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 146 QLKSIPHG--AFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTT--TTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccCHH--HHhCCCCCCEEEeeCCCccCCcc
Confidence 55544431 23333555555555555554443
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.8e-16 Score=157.85 Aligned_cols=141 Identities=28% Similarity=0.326 Sum_probs=71.8
Q ss_pred cccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCCCCCCCCcccEEEccCC
Q psy9862 52 MLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYN 131 (378)
Q Consensus 52 ~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n 131 (378)
-+.++.|++.++.+.. .-...+..+. |+.+.+. .+++..|.+...+..|..++.|++|++++|
T Consensus 172 ~~~~~~l~L~~n~~~~----~~~~~l~~l~---Ls~~~i~----------~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE----ANQALLQHKK---LSQYSID----------EDDDIENRMVMPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred CCccceEEeeCCCCCc----chhhHhhcCc---cCccccc----------CccccccceecChhhhccCCCCcEEECCCC
Confidence 3567778887776653 1111112222 2222222 445555666555556778888888888888
Q ss_pred CCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccCCcCcccCccc
Q psy9862 132 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI 211 (378)
Q Consensus 132 ~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~ 211 (378)
.+. .++..+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+
T Consensus 235 ~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 235 QIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp CCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST
T ss_pred CCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh
Confidence 887 356666678888888888888888888788888888888888888888877888888888888888777666443
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=127.94 Aligned_cols=105 Identities=20% Similarity=0.346 Sum_probs=89.2
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. +.+++|++++|.+........+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 78999999999988654 4678999999999864334558899999999999999996654 78899999999999999
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccC
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLP 208 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~ 208 (378)
++.++. .|..+++|++|++++|.++.++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 998855 5889999999999999988653
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=5.9e-15 Score=126.51 Aligned_cols=150 Identities=25% Similarity=0.429 Sum_probs=108.8
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. +.+++|++++|.+... .+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 67888888888887654 6889999999998862 345688889999999999998855 6778888999999999999
Q ss_pred CccCChh-hcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 181 LIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 181 ~~~l~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
++.+|.. |..+++|+.|++++|.++.+++ ..+..+++|++|++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV---------------------------------DAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH---------------------------------HHcCCCCCCCEEECCCC
Confidence 9888654 6788899999999888876542 12445555666666666
Q ss_pred cCCcCCCCCCCcccccccccccccCCCCcc
Q psy9862 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289 (378)
Q Consensus 260 ~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~ 289 (378)
.+..++.. .+..+++|+.+++++|++..
T Consensus 139 ~l~~~~~~--~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 139 KLQTIAKG--TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSCCCTT--TTTTCTTCCEEECCSSCEEC
T ss_pred cCCEECHH--HHhCCCCCCEEEeCCCCcCC
Confidence 66554432 12333555566666665544
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=121.11 Aligned_cols=141 Identities=27% Similarity=0.473 Sum_probs=86.3
Q ss_pred cEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCC
Q psy9862 149 RALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 228 (378)
Q Consensus 149 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~ 228 (378)
+.++++++.++.+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.++.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~------------------- 71 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN------------------- 71 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-------------------
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH-------------------
Confidence 45566666666665433 245666666666666666666666666666666666654432
Q ss_pred CceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccc
Q psy9862 229 PWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP 308 (378)
Q Consensus 229 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~ 308 (378)
..+..+++|++|++++|.++.+++.
T Consensus 72 --------------~~f~~l~~L~~L~Ls~N~l~~i~~~----------------------------------------- 96 (193)
T 2wfh_A 72 --------------QSFSNMTQLLTLILSYNRLRCIPPR----------------------------------------- 96 (193)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCBCCTT-----------------------------------------
T ss_pred --------------hHccCCCCCCEEECCCCccCEeCHH-----------------------------------------
Confidence 2245666677777777766655421
Q ss_pred hhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 309 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 309 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
++..+++|++|++++|+|+.++... +..+++|+++++++|+|.+.+ ...++.+|++.
T Consensus 97 -~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~C~c------~l~~l~~~~~~ 153 (193)
T 2wfh_A 97 -TFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLYCDC------NMQWLSDWVKS 153 (193)
T ss_dssp -TTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEECSG------GGHHHHHHHHH
T ss_pred -HhCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCeecCC------cCHHHHHHHHh
Confidence 3555677777777777777766542 333447777777777775443 35556666654
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.2e-15 Score=121.24 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=68.4
Q ss_pred CcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCcc-CChhhcCCCCCcEEec
Q psy9862 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIE-IPKELGNLTRLRELHI 199 (378)
Q Consensus 121 ~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~-l~~~l~~l~~L~~L~l 199 (378)
+++++|++++|.+.+..++..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444555555444223333344444555555555544443 334444455555555555443 3333444455555555
Q ss_pred cCCcCcccC--cccccccccccccccccCCCCceeccCCccccccc----cccCCcCcceeecccccCCcCCCC
Q psy9862 200 QANRLTVLP--PEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK----ELGNLSRLRELHIQANRLTVLPPE 267 (378)
Q Consensus 200 ~~~~l~~~~--~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~----~l~~~~~L~~L~l~~n~l~~~~~~ 267 (378)
++|.++.++ ..+..++.++ .+++++|.+..++. .+..+++|++|++++|.+.++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~-----------~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLK-----------SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCC-----------EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCCccCcchhHHHHhcCCCCC-----------EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 555444332 2222222221 24444444444443 577888999999999988877754
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.7e-17 Score=160.36 Aligned_cols=180 Identities=23% Similarity=0.242 Sum_probs=95.8
Q ss_pred ccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcc-------------cc-cCC
Q psy9862 49 LMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNR-------------LS-SLP 114 (378)
Q Consensus 49 l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~-------------l~-~~~ 114 (378)
+..+++|+.|++++|.+. .+|+.+..++ . |+ .+++++|. +. ..|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-----~Lp~~i~~l~-~-L~---------------~L~l~~n~~l~~l~~ll~~~~~~~~~~ 402 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-----VLQSELESCK-E-LQ---------------ELEPENKWCLLTIILLMRALDPLLYEK 402 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-----HHHHHHHHHH-H-HH---------------HHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred cccCccceeccCChhhHH-----hhHHHHHHHH-H-HH---------------HhccccchhhhhHHHHHHhcccccCCH
Confidence 356788889999998875 5677777666 3 33 33333221 11 223
Q ss_pred CCCCCCCcccEEE-ccCCCCCCCCCCc------cccc--CccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCC
Q psy9862 115 RGFGAFPVLEVLD-LTYNNLNEQSLPG------NFFM--LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP 185 (378)
Q Consensus 115 ~~~~~~~~L~~L~-l~~n~i~~~~~~~------~l~~--l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~ 185 (378)
..+..+++|+.|+ ++.|.+.+ ++. .+.. ...|+.|++++|.++.+|. ++.+++|++|++++|.++.+|
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp 479 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP 479 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC
T ss_pred HHHHHHHhcccCcchhhcccch--hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc
Confidence 3345555566665 34333221 000 0000 1246666666666666665 666666666666666666666
Q ss_pred hhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccc--cccccCCcCcceeecccccCCc
Q psy9862 186 KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI--PKELGNLSRLRELHIQANRLTV 263 (378)
Q Consensus 186 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l--~~~l~~~~~L~~L~l~~n~l~~ 263 (378)
..+..+++|+.|++++|.++.+| .++.++.++. |++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~-----------L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALENVD-GVANLPRLQE-----------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE-----------EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE-----------EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 66666666666666666666554 3333332222 44444444444 4444444455555555444443
Q ss_pred CC
Q psy9862 264 LP 265 (378)
Q Consensus 264 ~~ 265 (378)
+|
T Consensus 548 ~~ 549 (567)
T 1dce_A 548 EE 549 (567)
T ss_dssp SS
T ss_pred Cc
Confidence 33
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=8.8e-15 Score=135.13 Aligned_cols=154 Identities=28% Similarity=0.337 Sum_probs=111.1
Q ss_pred CceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCccc
Q psy9862 31 PELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110 (378)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l 110 (378)
+.++++++.+..++. .+ .+.++.|++++|.+++ ..+..+. ..+++++ .|++++|.+
T Consensus 21 ~~l~c~~~~l~~iP~--~~--~~~l~~L~Ls~N~l~~----l~~~~~~---------------~~l~~L~-~L~L~~N~i 76 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ--SL--PSYTALLDLSHNNLSR----LRAEWTP---------------TRLTNLH-SLLLSHNHL 76 (361)
T ss_dssp TEEECCSSCCSSCCS--SC--CTTCSEEECCSSCCCE----ECTTSSS---------------SCCTTCC-EEECCSSCC
T ss_pred CEEEeCCCCcCccCc--cC--CCCCCEEECCCCCCCc----cChhhhh---------------hcccccC-EEECCCCcC
Confidence 368888888876542 22 2468899999988875 1111111 0234566 888888888
Q ss_pred ccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCCCccCChhh
Q psy9862 111 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIEIPKEL 188 (378)
Q Consensus 111 ~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~~~l~~~l 188 (378)
+.++.. |.++++|++|++++|.+.. ..+..|.++++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 77 NFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 877654 8888889999999888875 2345677888888899988888855 556788888888888888888887654
Q ss_pred ----cCCCCCcEEeccCCcCcccCc
Q psy9862 189 ----GNLTRLRELHIQANRLTVLPP 209 (378)
Q Consensus 189 ----~~l~~L~~L~l~~~~l~~~~~ 209 (378)
..+++|+.|++++|.++.++.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCH
T ss_pred hcCcccCCcCCEEECCCCCCCccCH
Confidence 568888888888888887663
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.7e-15 Score=120.23 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC--ccccCCCCCcEEecCCCCCccCCh----hhc
Q psy9862 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQILVLRENDLIEIPK----ELG 189 (378)
Q Consensus 116 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~~~l~~----~l~ 189 (378)
.+..+++|++|++++|.+.+ .++..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+.
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred hhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 35667778888888888875 34555666788888888888887665 567778888888888888887765 677
Q ss_pred CCCCCcEEeccCCcCcccCc
Q psy9862 190 NLTRLRELHIQANRLTVLPP 209 (378)
Q Consensus 190 ~l~~L~~L~l~~~~l~~~~~ 209 (378)
.+++|++|++++|.+..+|.
T Consensus 145 ~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 145 LLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp TCSSCCEETTEETTSCBCCS
T ss_pred hCccCcEecCCCCChhhccc
Confidence 88888888888887776654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=4.7e-14 Score=118.18 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred hcCCCCCCEEEeecCCCCcCC-hhhccCCCccCcceeeccCCCCCccch
Q psy9862 311 LGNLSRLRELHIQANRLTVLP-PEIGNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 311 l~~~~~L~~L~l~~n~l~~~~-~~~~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
+..+++|++|++++|+|++++ ..+. .+++|+++++++|+|.+.++
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSST---TCTTCCEEECTTCCBCCSGG
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhh---cCCCCCEEEeCCCCccCcCc
Confidence 344566666666666666443 2232 33366666666666665543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.8e-15 Score=151.90 Aligned_cols=134 Identities=25% Similarity=0.253 Sum_probs=51.8
Q ss_pred CcccEEEccCCCCCCCCCCcccccCccccE-----EecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCCc
Q psy9862 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRA-----LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLR 195 (378)
Q Consensus 121 ~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~-----L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~ 195 (378)
+.++.|++.++.+.. .+..+.....|+. ++++.|.+...+..+..+..|+.|++++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 456777777777654 1222211112222 222223333334455666666666666666666666665666666
Q ss_pred EEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCC
Q psy9862 196 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267 (378)
Q Consensus 196 ~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 267 (378)
+|++++|.++.+|..+..+..++. |++++|.++.+|..+..+++|++|++++|.++.+|..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~-----------L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~ 311 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRV-----------LDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCE-----------EECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS
T ss_pred EEEeeCCcCcccChhhhCCCCCCE-----------EeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh
Confidence 666666666655554444433332 5555555555555555555555555555555544443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=3.9e-13 Score=110.97 Aligned_cols=142 Identities=24% Similarity=0.436 Sum_probs=80.8
Q ss_pred cEEecCCCCCccCCccccCCCCCcEEecCCCCCccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCC
Q psy9862 149 RALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227 (378)
Q Consensus 149 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~ 227 (378)
+.++++++.++.+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.++.++.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------ 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------ 69 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------------------
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh------------------
Confidence 45555555555554322 2455666666665555533 34555666666666555543332
Q ss_pred CCceeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCcccccc
Q psy9862 228 NPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEI 307 (378)
Q Consensus 228 ~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l 307 (378)
..+..+++|++|++++|.++.++..
T Consensus 70 ---------------~~~~~l~~L~~L~l~~N~l~~~~~~---------------------------------------- 94 (177)
T 2o6r_A 70 ---------------GVFDKLTKLTILYLHENKLQSLPNG---------------------------------------- 94 (177)
T ss_dssp ---------------TTTTTCTTCCEEECCSSCCCCCCTT----------------------------------------
T ss_pred ---------------hHccCCCccCEEECCCCCccccCHH----------------------------------------
Confidence 1134555666666666665544321
Q ss_pred chhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhh
Q psy9862 308 PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRS 374 (378)
Q Consensus 308 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 374 (378)
.+..+++|++|++++|+++++|..+ +..+++|+++++++|++.+.++. ...+.+|++.
T Consensus 95 --~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~~-----l~~l~~~~~~ 152 (177)
T 2o6r_A 95 --VFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCPR-----IDYLSRWLNK 152 (177)
T ss_dssp --TTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCHHH-----HHHHHHHHHH
T ss_pred --HhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCeeccCcc-----HHHHHHHHhh
Confidence 2456677888888888887777644 33345788888888888766542 4444555543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5e-14 Score=112.93 Aligned_cols=108 Identities=24% Similarity=0.228 Sum_probs=68.0
Q ss_pred ccchhccccCCcccc--cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-CCccccCCCCCcE
Q psy9862 97 PFLFLQFPCRMNRLS--SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQI 173 (378)
Q Consensus 97 ~~l~~~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~ 173 (378)
++++ .+++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 17 ~~l~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVK-ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCS-EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCe-EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4555 6666666666 5666566666777777777666642 445666666677776666664 5555555666666
Q ss_pred EecCCCCCccCC--hhhcCCCCCcEEeccCCcCcccC
Q psy9862 174 LVLRENDLIEIP--KELGNLTRLRELHIQANRLTVLP 208 (378)
Q Consensus 174 L~l~~n~~~~l~--~~l~~l~~L~~L~l~~~~l~~~~ 208 (378)
|++++|.++.++ ..+..+++|++|++++|.++.++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 666666666543 45666666666666666665443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=4.2e-13 Score=112.35 Aligned_cols=126 Identities=26% Similarity=0.355 Sum_probs=95.4
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. ..+++|++++|.+........+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 78888888888887654 38889999999887633223478888899999998888855 6678888888888888888
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
++.++. .|..+++|++|++++|.++.++ |..+..+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------------~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVM---------------------------------PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEEC---------------------------------TTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeC---------------------------------HHHhhcCCCCCEEEeCCC
Confidence 887643 4778888888888888877442 223556677888888887
Q ss_pred cCC
Q psy9862 260 RLT 262 (378)
Q Consensus 260 ~l~ 262 (378)
.+.
T Consensus 137 ~l~ 139 (192)
T 1w8a_A 137 PFN 139 (192)
T ss_dssp CBC
T ss_pred Ccc
Confidence 765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.6e-13 Score=109.96 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=107.3
Q ss_pred CCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCcc-CChhhcCCCCCcEEe
Q psy9862 120 FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIE-IPKELGNLTRLRELH 198 (378)
Q Consensus 120 ~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~-l~~~l~~l~~L~~L~ 198 (378)
.+++++|++++|.+.+..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 478999999999998435677788999999999999999877 678899999999999999997 677778899999999
Q ss_pred ccCCcCcccC--cccccccccccccccccCCCCceeccCCccccccc----cccCCcCcceeeccc
Q psy9862 199 IQANRLTVLP--PEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK----ELGNLSRLRELHIQA 258 (378)
Q Consensus 199 l~~~~l~~~~--~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~----~l~~~~~L~~L~l~~ 258 (378)
+++|.++.++ ..+..++.++ .+++++|.++.++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~-----------~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLK-----------SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCC-----------EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCC-----------EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998654 4555554444 49999999998776 588999999999863
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.9e-13 Score=112.84 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCCCcccEEEccCCCCCCCCCCcccccCc-cccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChh-hcCCCCC
Q psy9862 117 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLE-TLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRL 194 (378)
Q Consensus 117 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~-~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~-l~~l~~L 194 (378)
+..+.+|++|++++|.+.. ++. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.++.+|+. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445556666666666553 222 22332 566666666665544 3455556666666666666655433 3556666
Q ss_pred cEEeccCCcCcccCc--ccccccccccccccccCCCCceeccCCcccccccc----ccCCcCcceeecccccCC
Q psy9862 195 RELHIQANRLTVLPP--EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE----LGNLSRLRELHIQANRLT 262 (378)
Q Consensus 195 ~~L~l~~~~l~~~~~--~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~----l~~~~~L~~L~l~~n~l~ 262 (378)
++|++++|.++.+|. .+..++.+ +.+++++|.+..+|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L-----------~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSL-----------TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTC-----------CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCC-----------CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666554443 22222222 2244445554444432 566777777777776543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.3e-13 Score=113.81 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=100.4
Q ss_pred ccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCCCCCCCCcccEE
Q psy9862 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVL 126 (378)
Q Consensus 47 ~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L 126 (378)
+.+.++++|+.|++++|.++. ++ .+..+ .++++ .+++++|.++.+ ..|..+++|++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-----i~-~~~~~---------------~~~L~-~L~Ls~N~l~~~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-----IE-NLGAT---------------LDQFD-AIDFSDNEIRKL-DGFPLLRRLKTL 69 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-----CC-CGGGG---------------TTCCS-EEECCSSCCCEE-CCCCCCSSCCEE
T ss_pred HhcCCcCCceEEEeeCCCCch-----hH-Hhhhc---------------CCCCC-EEECCCCCCCcc-cccccCCCCCEE
Confidence 456678899999999998874 11 11111 12455 888888888877 458888888888
Q ss_pred EccCCCCCCCCCCcccccCccccEEecCCCCCccCCc--cccCCCCCcEEecCCCCCccCChh----hcCCCCCcEEecc
Q psy9862 127 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQILVLRENDLIEIPKE----LGNLTRLRELHIQ 200 (378)
Q Consensus 127 ~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~~~~l~~~----l~~l~~L~~L~l~ 200 (378)
++++|.+... .+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus 70 ~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 70 LVNNNRICRI-GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSSCCCEE-CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ECCCCccccc-CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 8888888752 22334778888888888888887776 677888888888888888877764 7788888888888
Q ss_pred CCcCc
Q psy9862 201 ANRLT 205 (378)
Q Consensus 201 ~~~l~ 205 (378)
+|...
T Consensus 149 ~n~~~ 153 (176)
T 1a9n_A 149 KVKLK 153 (176)
T ss_dssp ECCHH
T ss_pred cCCHH
Confidence 77664
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=2e-12 Score=108.33 Aligned_cols=104 Identities=27% Similarity=0.416 Sum_probs=80.2
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCC-ccccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. +++++|++++|.+.. ++..+..+++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 67788888888887643 578888888888873 5667888888888888888888665 457788888888888888
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccCc
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLPP 209 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~~ 209 (378)
++.++. .|..+++|+.|++++|.++.++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 887743 57788888888888887776553
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=7.8e-13 Score=120.46 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=144.5
Q ss_pred HhhhhhccCCceeeccCCcccCcCcccccc-cccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccch
Q psy9862 22 LDESKEIKNPELELADKGLSSFEELPGLMN-MLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLF 100 (378)
Q Consensus 22 ~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~ 100 (378)
+......++++|+++|+ +.. ..+..+.. +++|+.|||++|.+..-. ..... ++...
T Consensus 19 l~~~~~~~l~~L~l~g~-i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~--~~~~~-------------------~~~~~ 75 (329)
T 3sb4_A 19 MTEEEANSITHLTLTGK-LNA-EDFRHLRDEFPSLKVLDISNAEIKMYS--GKAGT-------------------YPNGK 75 (329)
T ss_dssp SCHHHHHHCSEEEEEEE-ECH-HHHHHHHHSCTTCCEEEEEEEEECCEE--ESSSS-------------------SGGGC
T ss_pred ccchhhCceeEEEEecc-ccH-HHHHHHHHhhccCeEEecCcceeEEec--Ccccc-------------------ccccc
Confidence 33334456889999875 221 12234444 788999999999886200 00000 01111
Q ss_pred hccccCCcccccCCCC-CCC--------CCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCc-cccCCCC
Q psy9862 101 LQFPCRMNRLSSLPRG-FGA--------FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKN 170 (378)
Q Consensus 101 ~~l~l~~~~l~~~~~~-~~~--------~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~ 170 (378)
...+..+ .+|.. |.+ +++|++|++.+ .+..+. ..+|.++++|+.+++++|.+..++. +|..+.+
T Consensus 76 -~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~-~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~ 149 (329)
T 3sb4_A 76 -FYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE-DAAFKGCDNLKICQIRKKTAPNLLPEALADSVT 149 (329)
T ss_dssp -CEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC-TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC
T ss_pred -ccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchh-HHHhhcCcccceEEcCCCCccccchhhhcCCCc
Confidence 2222222 33333 667 88999999988 766532 5568888999999999888875544 4666666
Q ss_pred CcEEecCCCCC----ccC-ChhhcCCCCCc-EEeccCCcCcccCcccc----cccccccccc-------------cccCC
Q psy9862 171 LQILVLRENDL----IEI-PKELGNLTRLR-ELHIQANRLTVLPPEIG----NLDLASHKSV-------------LKMDF 227 (378)
Q Consensus 171 L~~L~l~~n~~----~~l-~~~l~~l~~L~-~L~l~~~~l~~~~~~~~----~l~~l~~l~~-------------~~~~~ 227 (378)
+..+....+.. ..+ ...|..+..|+ .+.+.... .++..+. ....+..+.. ..+..
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~ 227 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPN 227 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTT
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCC
Confidence 66666554221 122 22344455555 33332211 1111000 0000000000 01233
Q ss_pred CCceeccCCcccccccc-ccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchh-hhhccCcccc
Q psy9862 228 NPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL-QLVLRENDLI 305 (378)
Q Consensus 228 ~~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~-~L~l~~n~l~ 305 (378)
++.+++.+|.+..++.. |.+|++|+++++.+| +..++... ...+.+|+ .+++.+ .++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-------------------F~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-------------------FSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT-------------------TTTCTTCCEEEEECT-TCC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH-------------------hhCChhccEEEEEcc-cce
Confidence 34455555555555432 455555555555554 44333221 12344565 666666 666
Q ss_pred ccc-hhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeec
Q psy9862 306 EIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 348 (378)
Q Consensus 306 ~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l 348 (378)
.++ .+|.+|++|+++++++|.++.++... +..+++|+.++.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a--F~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDEL--FGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTT--TCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhh--hcCCcchhhhcc
Confidence 664 46788888888888888888777644 555567777653
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=6.1e-12 Score=103.73 Aligned_cols=125 Identities=30% Similarity=0.505 Sum_probs=93.1
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 180 (378)
.+++++++++.+|..+. +++++|++++|.+.. ..+..+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 67788888888876543 688888999888875 2244567788888888888888876654 5778888888888888
Q ss_pred CccCChh-hcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccc
Q psy9862 181 LIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259 (378)
Q Consensus 181 ~~~l~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n 259 (378)
++.++.. +..+++|+.|++++|.++.++.. .+..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------------------------~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDG---------------------------------IFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------------------------------TTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHH---------------------------------HhcCCcccCEEEecCC
Confidence 8877554 67788888888888877755532 2355677777888777
Q ss_pred cCC
Q psy9862 260 RLT 262 (378)
Q Consensus 260 ~l~ 262 (378)
.+.
T Consensus 135 ~~~ 137 (177)
T 2o6r_A 135 PWD 137 (177)
T ss_dssp CBC
T ss_pred Cee
Confidence 655
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=5e-13 Score=121.71 Aligned_cols=244 Identities=13% Similarity=0.067 Sum_probs=136.9
Q ss_pred hccCCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccC
Q psy9862 27 EIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106 (378)
Q Consensus 27 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~ 106 (378)
..+++.|||++|.+..+...+ ..++.++.+.+..+.+.. ..+....... +..+++++ .+.+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~----~aF~~~~~~~-----------~~g~~~L~-~l~L~ 109 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA----YAFSNVVNGV-----------TKGKQTLE-KVILS 109 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT----TTTEEEETTE-----------EEECTTCC-C-CBC
T ss_pred hccCeEEecCcceeEEecCcc--ccccccccccccccccCH----HHhccccccc-----------ccccCCCc-EEECC
Confidence 356999999999998332211 233346667777765543 2222200000 00022455 77777
Q ss_pred CcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCC----ccC-CccccCCCCCc--------
Q psy9862 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF----EVL-PAEIGNLKNLQ-------- 172 (378)
Q Consensus 107 ~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l----~~l-~~~l~~l~~L~-------- 172 (378)
. .++.++.. |.++++|+++++++|.+..+. +..|.++.++..+....... ..+ ..++..+..|+
T Consensus 110 ~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~ 187 (329)
T 3sb4_A 110 E-KIKNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM 187 (329)
T ss_dssp T-TCCEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT
T ss_pred c-cccchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC
Confidence 7 77777666 888999999999998876532 45677776777666655211 111 11122222222
Q ss_pred ------------------EEecCCCCCccCChhh-cCCCCCcEEeccCCcCcccCc-ccccccccccccccccCCCCcee
Q psy9862 173 ------------------ILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPP-EIGNLDLASHKSVLKMDFNPWLV 232 (378)
Q Consensus 173 ------------------~L~l~~n~~~~l~~~l-~~l~~L~~L~l~~~~l~~~~~-~~~~l~~l~~l~~~~~~~~~~l~ 232 (378)
.+.+.++-...-...+ ..+++|+.+++++|.++.++. .+..+..++. +.
T Consensus 188 ~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~-----------l~ 256 (329)
T 3sb4_A 188 GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK-----------IK 256 (329)
T ss_dssp CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE-----------EE
T ss_pred CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE-----------EE
Confidence 2222211100000011 125677777777777766654 2333333333 55
Q ss_pred ccCCccccccc-cccCCcCcc-eeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccch-
Q psy9862 233 LRENDLIEIPK-ELGNLSRLR-ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK- 309 (378)
Q Consensus 233 l~~~~l~~l~~-~l~~~~~L~-~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~- 309 (378)
+.+| +..++. +|.+|++|+ .+++.+ .+..++... ...+++|+.+++++|.++.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-------------------F~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA-------------------FMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT-------------------TTTCTTEEEEEECSSCCCEECTT
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh-------------------hhCCccCCEEEeCCCccCccchh
Confidence 6555 555544 478888888 888877 566554322 2234566677787888887765
Q ss_pred hhcCCCCCCEEEe
Q psy9862 310 ELGNLSRLRELHI 322 (378)
Q Consensus 310 ~l~~~~~L~~L~l 322 (378)
+|.+|++|+.++.
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 5788999998864
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1e-11 Score=101.69 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=77.7
Q ss_pred eeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh
Q psy9862 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE 310 (378)
Q Consensus 231 l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~ 310 (378)
++++++.++.+|..+ .++|++|++++|.++.+++.. .+..++|+.|++++|+++.++..
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~-------------------~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGV-------------------FDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTT-------------------TTTCTTCSEEECCSSCCCCCCTT
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhh-------------------hcCcccCCEEECCCCCcCccChh
Confidence 555555555555443 256777777777777554321 11234555666777777766654
Q ss_pred -hcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 311 -LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 311 -l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
+..+++|++|++++|+|++++... +..+++|++|++++|++.+.++ ...++.+|++..
T Consensus 73 ~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~c~c~-----~l~~l~~~l~~~ 131 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDNQLKSIPRGA--FDNLKSLTHIWLLNNPWDCACS-----DILYLSRWISQH 131 (170)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCBCTTBG-----GGHHHHHHHHHC
T ss_pred hccCCCCCCEEECCCCccCEeCHHH--hcCCCCCCEEEeCCCCCCCCch-----hHHHHHHHHHhC
Confidence 578899999999999999888753 3444599999999999976653 355666677654
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.1e-13 Score=128.08 Aligned_cols=169 Identities=18% Similarity=0.136 Sum_probs=91.1
Q ss_pred CcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-----CCccc-cCCCCCcEEecCCCCCcc-----CChhhc
Q psy9862 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-----LPAEI-GNLKNLQILVLRENDLIE-----IPKELG 189 (378)
Q Consensus 121 ~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~~l-~~l~~L~~L~l~~n~~~~-----l~~~l~ 189 (378)
+.|++|++++|.+.+.........+++|++|++++|.++. +...+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5677777777777542222222345667777777777752 22222 234567777777777652 344456
Q ss_pred CCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccccccccccCCcCcceeecccccCCcCCCCCC
Q psy9862 190 NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 269 (378)
Q Consensus 190 ~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 269 (378)
.+++|++|++++|.++.... ..++..+..+++|++|++++|.++...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~-----------------------------~~L~~~L~~~~~L~~L~Ls~N~i~~~g---- 227 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGL-----------------------------ELLAAQLDRNRQLQELNVAYNGAGDTA---- 227 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHH-----------------------------HHHHHHGGGCSCCCEEECCSSCCCHHH----
T ss_pred cCCCcCEEeCCCCCCCcHHH-----------------------------HHHHHHHhcCCCcCeEECCCCCCCHHH----
Confidence 66777777777776652110 011233445556777777777654211
Q ss_pred CcccccccccccccCCCCccCccchhhhhccCccccccchhhcCCCCCCEEEeecCCCCcCC-hhhccCCCcc--Cccee
Q psy9862 270 NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP-PEIGNLDLAS--HKSVL 346 (378)
Q Consensus 270 ~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~l~~~~--~l~~l 346 (378)
...++.++..+++|++|++++|.|+... ..+..+.... .++.+
T Consensus 228 ----------------------------------~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l 273 (372)
T 3un9_A 228 ----------------------------------ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273 (372)
T ss_dssp ----------------------------------HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEE
T ss_pred ----------------------------------HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhh
Confidence 0123345566778888888888887222 2333332222 26666
Q ss_pred e--ccCCCCCcc
Q psy9862 347 K--MDFNPWVTP 356 (378)
Q Consensus 347 ~--l~~n~~~~~ 356 (378)
. +.++.+...
T Consensus 274 ~~ll~~~~~~~~ 285 (372)
T 3un9_A 274 VSLTEGTAVSEY 285 (372)
T ss_dssp CCCC----CHHH
T ss_pred HhhhcCCccCHH
Confidence 6 666666543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=101.03 Aligned_cols=107 Identities=29% Similarity=0.436 Sum_probs=93.7
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. ++|++|++++|.+.. ..+..+.++++|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 78999999999998764 899999999999987 3367789999999999999999988775 5889999999999999
Q ss_pred CccCChh-hcCCCCCcEEeccCCcCcccCccc
Q psy9862 181 LIEIPKE-LGNLTRLRELHIQANRLTVLPPEI 211 (378)
Q Consensus 181 ~~~l~~~-l~~l~~L~~L~l~~~~l~~~~~~~ 211 (378)
++.+|.. +..+++|+.|++++|.+...+..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 9998765 889999999999999998655433
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.7e-11 Score=100.76 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=77.7
Q ss_pred eeccCCccccccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccchh
Q psy9862 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE 310 (378)
Q Consensus 231 l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~~ 310 (378)
++++++.++.+|..+. ++|++|++++|.+..+++.. .+..++|+.|++++|+++.+|..
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~-------------------~~~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGV-------------------FDHLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-------------------TTTCTTCCEEECCSSCCCCCCTT
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHH-------------------hcCCcCCCEEECCCCCCCccChh
Confidence 5555566666655443 66777777777777654321 12234555666777777777654
Q ss_pred -hcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 311 -LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 311 -l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
+..+++|++|++++|+|+++|... +..+++|+++++++|+|.+.+. ...++..|++..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~~~-----~~~~l~~~~~~~ 134 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGA--FDNLKSLTHIYLYNNPWDCECR-----DIMYLRNWVADH 134 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEECCSSCBCTTBG-----GGHHHHHHHHHC
T ss_pred HhCCcchhhEEECCCCccceeCHHH--hccccCCCEEEeCCCCcccccc-----cHHHHHHHHHhc
Confidence 577889999999999999888752 3444589999999999876552 345566666553
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=3.2e-11 Score=98.70 Aligned_cols=104 Identities=32% Similarity=0.463 Sum_probs=91.3
Q ss_pred ccccCCcccccCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCcc-ccCCCCCcEEecCCCC
Q psy9862 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLREND 180 (378)
Q Consensus 102 ~l~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~ 180 (378)
.++++++.++.+|..+. +.+++|++++|.+.. ..+..|.++++|++|++++|+++.++.. +..+++|++|++++|.
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 78999999999998763 889999999999987 3367789999999999999999987764 6889999999999999
Q ss_pred CccCCh-hhcCCCCCcEEeccCCcCcccC
Q psy9862 181 LIEIPK-ELGNLTRLRELHIQANRLTVLP 208 (378)
Q Consensus 181 ~~~l~~-~l~~l~~L~~L~l~~~~l~~~~ 208 (378)
++.++. .+..+++|+.|++++|.++...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 998866 5889999999999999987443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.3e-13 Score=116.01 Aligned_cols=138 Identities=22% Similarity=0.255 Sum_probs=83.1
Q ss_pred cCCccccCCCCCcEEecCCCCCccCChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCccc
Q psy9862 160 VLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI 239 (378)
Q Consensus 160 ~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~ 239 (378)
.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~------------------------------- 86 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE------------------------------- 86 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-------------------------------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-------------------------------
Confidence 33345666666666666666666665 5566666666666666555444
Q ss_pred cccccccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccch--hhcCCCCC
Q psy9862 240 EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK--ELGNLSRL 317 (378)
Q Consensus 240 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~~--~l~~~~~L 317 (378)
..+..+++|++|++++|.++.+| . .+..++++.|++++|.++.++. .+..+++|
T Consensus 87 ---~~~~~~~~L~~L~L~~N~l~~l~-~--------------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 87 ---NLDAVADTLEELWISYNQIASLS-G--------------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp ---SHHHHHHHCSEEEEEEEECCCHH-H--------------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred ---chhhcCCcCCEEECcCCcCCcCC-c--------------------cccCCCCCEEECCCCcCCchhHHHHHhcCCCC
Confidence 33344566777777777666543 1 1123455566677777766554 57788899
Q ss_pred CEEEeecCCCCcCChh--------hccCCCccCcceeeccCCCCCc
Q psy9862 318 RELHIQANRLTVLPPE--------IGNLDLASHKSVLKMDFNPWVT 355 (378)
Q Consensus 318 ~~L~l~~n~l~~~~~~--------~~~l~~~~~l~~l~l~~n~~~~ 355 (378)
++|++++|.+.+.++. ...+..+++|+++| +|+++.
T Consensus 143 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999999988744221 01123344787776 666643
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=4.3e-14 Score=119.08 Aligned_cols=90 Identities=22% Similarity=0.298 Sum_probs=64.6
Q ss_pred CCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhhcCCCCC
Q psy9862 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRL 194 (378)
Q Consensus 115 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l~~l~~L 194 (378)
..|..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..+++|
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred HHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 356677777888888777765 34 667777778888877777777766666677777777777777665 56667777
Q ss_pred cEEeccCCcCcccC
Q psy9862 195 RELHIQANRLTVLP 208 (378)
Q Consensus 195 ~~L~l~~~~l~~~~ 208 (378)
+.|++++|.++.++
T Consensus 118 ~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 118 RVLYMSNNKITNWG 131 (198)
T ss_dssp SEEEESEEECCCHH
T ss_pred CEEECCCCcCCchh
Confidence 77777777776543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1e-12 Score=121.42 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=99.5
Q ss_pred ccCCceeeccCCcccCc--Ccccc-c-ccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 28 IKNPELELADKGLSSFE--ELPGL-M-NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 28 ~~l~~L~l~~~~~~~~~--~~~~l-~-~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
..++.|++++|.++... .+... . ..++|+.|++++|.+++.+...+...+.++. .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~--------------------~L 131 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR--------------------KL 131 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE--------------------EE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc--------------------Hh
Confidence 45778888888876422 11111 1 2367888888888887666666665555544 77
Q ss_pred ccCCccccc-----CCCCC-CCCCcccEEEccCCCCCCCC---CCcccccCccccEEecCCCCCc-----cCCccccCCC
Q psy9862 104 PCRMNRLSS-----LPRGF-GAFPVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDNDFE-----VLPAEIGNLK 169 (378)
Q Consensus 104 ~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~n~i~~~~---~~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~ 169 (378)
++++|.++. +...+ ...+.|++|++++|.+++.. +...+...++|++|++++|.++ .++..+...+
T Consensus 132 ~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 777777762 11111 23567788888888775411 1223355677888888888776 2345556667
Q ss_pred CCcEEecCCCCCcc-----CChhhcCCCCCcEEeccCCcCc
Q psy9862 170 NLQILVLRENDLIE-----IPKELGNLTRLRELHIQANRLT 205 (378)
Q Consensus 170 ~L~~L~l~~n~~~~-----l~~~l~~l~~L~~L~l~~~~l~ 205 (378)
+|++|++++|.++. ++..+...++|++|++++|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 78888888887762 3444556677788888877776
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=2.2e-09 Score=100.01 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=128.1
Q ss_pred cchhccccCCcccccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEec
Q psy9862 98 FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVL 176 (378)
Q Consensus 98 ~l~~~l~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 176 (378)
+++ .+.+..+ ++.++.. |.+ ..|+.+.+.. .+..+. ...|.++++|+.+++++|.++.++...-...+|+.+.+
T Consensus 136 ~L~-~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~-~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIA-KVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLK-EDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCS-EEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEEC-SSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred Ccc-EEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEeh-HHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 345 5555544 5555544 666 3688888875 444322 45677888888888888888777664333577888888
Q ss_pred CCCCCccC-ChhhcCCCCCcEEeccCCcCcccCcccccccccccccccccCCCCceeccCCcccccc-ccccCCcCccee
Q psy9862 177 RENDLIEI-PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP-KELGNLSRLREL 254 (378)
Q Consensus 177 ~~n~~~~l-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~l~~l~~l~~~~~~~~~~l~l~~~~l~~l~-~~l~~~~~L~~L 254 (378)
..+ +..+ ...|..+.+|+.+++..+ ++.++.....-.. ++.+.+ .+.+..++ ..|..|++|+.+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~-----------L~~i~l-p~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESG-----------ITTVKL-PNGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCC-----------CSEEEE-ETTCCEECTTTTTTCTTCCEE
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCC-----------ccEEEe-CCCccEEChhHhhCCCCCCEE
Confidence 743 5655 345778888888887764 4433332111122 222455 34455554 357888888888
Q ss_pred ecccccCC-----cCCCCCCCcccccccccccccCC------CCccCccchhhhhccCccccccch-hhcCCCCCCEEEe
Q psy9862 255 HIQANRLT-----VLPPEIGNLDLASHKSVLKMDFN------PWVTPIADQLQLVLRENDLIEIPK-ELGNLSRLRELHI 322 (378)
Q Consensus 255 ~l~~n~l~-----~~~~~~~~l~~~~~l~~l~l~~~------~~~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l 322 (378)
++.++.+. .++.. .+..+.+|+.+.+..+ .-...+.+|+.+.+..+ ++.+.. ++.+| +|+++++
T Consensus 277 ~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EEESSCCCCCTTCEECTT--TTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred EeCCccccCCcccEECHH--HhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 88877654 23321 2333344555544422 01123455666666433 444432 45666 6777777
Q ss_pred ecCCCCcCChhhccCCCc-cCcceeeccCC
Q psy9862 323 QANRLTVLPPEIGNLDLA-SHKSVLKMDFN 351 (378)
Q Consensus 323 ~~n~l~~~~~~~~~l~~~-~~l~~l~l~~n 351 (378)
++|.+..++... +..+ ..+..+++-.+
T Consensus 353 ~~n~~~~l~~~~--F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 353 EGTTPPQVFEKV--WYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCBCCCSS--CCCSCTTCCEEEECGG
T ss_pred cCCCCccccccc--ccCCCCCccEEEeCHH
Confidence 777666554332 2222 24555555443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=7.6e-10 Score=101.28 Aligned_cols=116 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred eeccCC-ccccccccccCCcCcceeeccc-ccCCcCCCCCCCcccccccccccccCCCCccCccchhhhhccCccccccc
Q psy9862 231 LVLREN-DLIEIPKELGNLSRLRELHIQA-NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP 308 (378)
Q Consensus 231 l~l~~~-~l~~l~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~l~~~~~l~~l~l~~~~~~~~~~~l~~L~l~~n~l~~l~ 308 (378)
++.+++ .++.+|. +..+++|+.|+|++ |.+..+++.. .+.+++|+.|++++|+++.++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~-------------------~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRD-------------------LRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG-------------------SCSCCCCSEEECCSSCCCEEC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhH-------------------hccccCCCEEECCCCccceeC
Confidence 555665 6777777 77788888888885 8887666421 122345667777777777665
Q ss_pred h-hhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHhhh
Q psy9862 309 K-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSE 375 (378)
Q Consensus 309 ~-~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
. +|..+++|++|+|++|+|+++|..+... + .|++|++.+|+|.+.+ ...++..|++..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~-~L~~l~l~~N~~~c~c------~l~~~~~~~~~~ 131 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQG--L-SLQELVLSGNPLHCSC------ALRWLQRWEEEG 131 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCS--C-CCCEEECCSSCCCCCG------GGHHHHHHHHTT
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHccc--C-CceEEEeeCCCccCCC------ccHHHHHHHHhC
Confidence 4 5788999999999999999998766332 2 3999999999997654 466677777653
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.3e-08 Score=94.88 Aligned_cols=36 Identities=3% Similarity=0.047 Sum_probs=27.1
Q ss_pred chhhhhccCccccccch-hhcCCC-CCCEEEeecCCCC
Q psy9862 293 DQLQLVLRENDLIEIPK-ELGNLS-RLRELHIQANRLT 328 (378)
Q Consensus 293 ~l~~L~l~~n~l~~l~~-~l~~~~-~L~~L~l~~n~l~ 328 (378)
+|+.+.+.+|.+..++. .+.+++ +++.|.+..+.+.
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 78888999888887654 355664 7899999877554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.6e-09 Score=97.69 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=85.3
Q ss_pred ccccCCc-ccccCCCCCCCCCcccEEEccC-CCCCCCCCCcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCC
Q psy9862 102 QFPCRMN-RLSSLPRGFGAFPVLEVLDLTY-NNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRE 178 (378)
Q Consensus 102 ~l~l~~~-~l~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~ 178 (378)
.++++++ .++.+|. +..+++|++|+|++ |.+.. ..+..|.++++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 5678887 8999999 99999999999996 88886 3346788999999999999999865 45678999999999999
Q ss_pred CCCccCChhhcCCCCCcEEeccCCcCc
Q psy9862 179 NDLIEIPKELGNLTRLRELHIQANRLT 205 (378)
Q Consensus 179 n~~~~l~~~l~~l~~L~~L~l~~~~l~ 205 (378)
|.++.+|........|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999988765433334999999999887
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=3.8e-09 Score=87.48 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=65.8
Q ss_pred cccccccEEEcccc-cccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCCCCCCCCcccEEEc
Q psy9862 50 MNMLYITRITLSHN-KLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDL 128 (378)
Q Consensus 50 ~~~~~L~~L~ls~~-~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l 128 (378)
...+.|++|++++| .+.+++...+.+.+... +.|++|++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----------------------------------------~~L~~L~L 72 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----------------------------------------TYVKKFSI 72 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----------------------------------------CSCCEEEC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----------------------------------------CCcCEEEC
Confidence 36677777777777 77766655555444332 23444555
Q ss_pred cCCCCCCCC---CCcccccCccccEEecCCCCCc-----cCCccccCCCCCcEEec--CCCCCcc-----CChhhcCCCC
Q psy9862 129 TYNNLNEQS---LPGNFFMLETLRALYLGDNDFE-----VLPAEIGNLKNLQILVL--RENDLIE-----IPKELGNLTR 193 (378)
Q Consensus 129 ~~n~i~~~~---~~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l--~~n~~~~-----l~~~l~~l~~ 193 (378)
++|.+.+.. +...+...++|++|++++|.++ .+...+...++|++|++ ++|.++. +...+...++
T Consensus 73 s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~ 152 (185)
T 1io0_A 73 VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152 (185)
T ss_dssp TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS
T ss_pred cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC
Confidence 555544311 1112333345666666666555 23444555566777777 6666662 3445566677
Q ss_pred CcEEeccCCcCc
Q psy9862 194 LRELHIQANRLT 205 (378)
Q Consensus 194 L~~L~l~~~~l~ 205 (378)
|++|++++|.+.
T Consensus 153 L~~L~L~~n~i~ 164 (185)
T 1io0_A 153 LLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCCSSHH
T ss_pred cCEEeccCCCCC
Confidence 777777777665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=3.2e-08 Score=90.70 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=42.6
Q ss_pred CcccEEEccCCCCCCCC-------CCcccccCccccEEecCCCCCc----------cCCccccCCCCCcEEecCCCCCcc
Q psy9862 121 PVLEVLDLTYNNLNEQS-------LPGNFFMLETLRALYLGDNDFE----------VLPAEIGNLKNLQILVLRENDLIE 183 (378)
Q Consensus 121 ~~L~~L~l~~n~i~~~~-------~~~~l~~l~~L~~L~l~~n~l~----------~l~~~l~~l~~L~~L~l~~n~~~~ 183 (378)
..++.|++..+...+.. +..++..+++|+.|.+.+.... .++..+..+++|+.|.++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 34667777766532101 1122445678888887654321 122334555666666666552122
Q ss_pred CChhhcCCCCCcEEeccCCcCc
Q psy9862 184 IPKELGNLTRLRELHIQANRLT 205 (378)
Q Consensus 184 l~~~l~~l~~L~~L~l~~~~l~ 205 (378)
++. +. +++|+.|++..|.++
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCC
T ss_pred ecc-cc-CCCCcEEEEecCCCC
Confidence 332 22 556666666655543
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.54 E-value=1.6e-05 Score=73.81 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCceeeccCCcccCcCcccccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcc
Q psy9862 30 NPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNR 109 (378)
Q Consensus 30 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~ 109 (378)
++.+.+... ++.++. .++.+|++|+.+.+..+.-.. ++...-.....+.+++ .+.+.. .
T Consensus 66 L~sI~iP~s-vt~Ig~-~AF~~C~~L~~i~~~~n~p~~-----------------l~~Ig~~aF~~c~~L~-~i~~~~-~ 124 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGS-NAFYNCTSLKRVTIQDNKPSC-----------------VKKIGRQAFMFCSELT-DIPILD-S 124 (394)
T ss_dssp CCEEEECTT-CCEECT-TTTTTCTTCCEEEEGGGCCCC-----------------CCEECTTTTTTCTTCC-BCGGGT-T
T ss_pred CEEEEECCC-eeEEhH-HHhhCCccCceEeecCCCCCe-----------------eeEechhhchhcccce-eeccCC-c
Confidence 566666543 443332 356678888888877653111 1111111111223333 333332 2
Q ss_pred cccCCCC-CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCccCCccccCCCCCcEEecCCCCCccCChhh
Q psy9862 110 LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKEL 188 (378)
Q Consensus 110 l~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~~~l~~~l 188 (378)
++.+... |..+..|+.+.+..+... .-...+.++..|+.+.+..+ ++.+....-....|+.+.+..+-..--...+
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~~~~--I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af 201 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEGVTS--VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAF 201 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTT
T ss_pred cceehhhhhhhhcccccccccceeee--ecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchh
Confidence 3444333 677777777777654321 11344666677777777554 3333332212345666665443322223345
Q ss_pred cCCCCCcEEeccCC
Q psy9862 189 GNLTRLRELHIQAN 202 (378)
Q Consensus 189 ~~l~~L~~L~l~~~ 202 (378)
..+.++........
T Consensus 202 ~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 202 SECFALSTITSDSE 215 (394)
T ss_dssp TTCTTCCEEEECCS
T ss_pred hhccccceeccccc
Confidence 55666665554443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=1.3e-08 Score=84.30 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=57.9
Q ss_pred ccCCceeeccC-CcccCc--Ccc-cccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 28 IKNPELELADK-GLSSFE--ELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 28 ~~l~~L~l~~~-~~~~~~--~~~-~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
..+++|+|++| .+...+ .+. .+...++|++|+|++|.+.+++...+.+.+...+ +++ +|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~----------------~L~-~L 98 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN----------------TLK-SL 98 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS----------------SCC-EE
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC----------------CcC-EE
Confidence 45999999999 887522 122 3457799999999999999988888877666443 344 55
Q ss_pred ccCCccccc-----CCCCCCCCCcccEEEc--cCCCCC
Q psy9862 104 PCRMNRLSS-----LPRGFGAFPVLEVLDL--TYNNLN 134 (378)
Q Consensus 104 ~l~~~~l~~-----~~~~~~~~~~L~~L~l--~~n~i~ 134 (378)
++++|.|+. +...+...+.|++|++ ++|.+.
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 555555551 2233344445555555 444444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=1.5e-07 Score=86.16 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCCCcc-CCccc--cCCCCCcEEecCCC--C------CccCCh
Q psy9862 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEI--GNLKNLQILVLREN--D------LIEIPK 186 (378)
Q Consensus 118 ~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~-l~~~l--~~l~~L~~L~l~~n--~------~~~l~~ 186 (378)
..+++|++|+++++.- ..++. + ..++|++|.+..+.++. ....+ ..+++|++|+++.+ . +..+..
T Consensus 169 ~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 4456677777766521 12222 2 25667777776665541 11112 24666777766421 1 111222
Q ss_pred hh--cCCCCCcEEeccCCcCc
Q psy9862 187 EL--GNLTRLRELHIQANRLT 205 (378)
Q Consensus 187 ~l--~~l~~L~~L~l~~~~l~ 205 (378)
.+ ..+++|+.|++.+|.++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTH
T ss_pred HHhcCCCCCcCEEeCCCCCCc
Confidence 22 23567777777666654
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=1e-05 Score=75.08 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=32.1
Q ss_pred ccchhhhhccCccccccc-hhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccC
Q psy9862 291 IADQLQLVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 350 (378)
Q Consensus 291 ~~~l~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~ 350 (378)
+.+|+.+++..+ ++.+. .++.+|++|+++++..+ ++.++... +..+++|+.+++..
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA--FQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT--BTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH--hhCCCCCCEEEECC
Confidence 445555555432 55553 34667777777777655 66554432 44555777776643
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.17 E-value=9.6e-05 Score=68.46 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=57.9
Q ss_pred cccCCcCcceeecccccCCcCCCCCCCcccccccccccccCCC----CccCccchhhhhccCccccccch-hhcCCCCCC
Q psy9862 244 ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP----WVTPIADQLQLVLRENDLIEIPK-ELGNLSRLR 318 (378)
Q Consensus 244 ~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~~~----~~~~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~ 318 (378)
.+..+..++.+.+..+...--...+..+ ..++........ ....+.+++.+.+..+ ++.+++ ++.+|.+|+
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~---~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNC---SGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTC---TTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccceeEEcCCCcceeeccccccc---cccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 3567777777777655332111222222 233333222221 1224556666766544 556644 578899999
Q ss_pred EEEeecCCCCcCChhhccCCCccCcceeeccCC
Q psy9862 319 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 351 (378)
Q Consensus 319 ~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n 351 (378)
.+++.++ ++.++... +..+.+|+.+.+..+
T Consensus 324 ~i~lp~~-v~~I~~~a--F~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRS--FRGCTSLSNINFPLS 353 (394)
T ss_dssp EECCCTT-CCEECTTT--TTTCTTCCEECCCTT
T ss_pred EEEeCCc-ccEEhHHh--ccCCCCCCEEEECcc
Confidence 9999754 77666533 556668888888655
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=1e-06 Score=76.75 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=70.7
Q ss_pred ccccCCCCCCCCccchhc--cccCCcccccCCCC----CCCCCcccEEEccCCCCCCCC-CCcccccCccccEEecCCCC
Q psy9862 85 IPILHVTSLPILPFLFLQ--FPCRMNRLSSLPRG----FGAFPVLEVLDLTYNNLNEQS-LPGNFFMLETLRALYLGDND 157 (378)
Q Consensus 85 l~~l~l~~~~~~~~l~~~--l~l~~~~l~~~~~~----~~~~~~L~~L~l~~n~i~~~~-~~~~l~~l~~L~~L~l~~n~ 157 (378)
-+.++++.+...+.+. . +++..|....++.. ..+++.|++|++++|.+.+.. ++..+..+++|+.|++++|.
T Consensus 129 ~~~LdLs~l~~dp~L~-~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 129 QQALDLKGLRSDPDLV-AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp TTEEECTTGGGCHHHH-HTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred ccccCHHHcCCCcchh-hcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 3445666666666666 4 56666644322221 245678888888888887532 23445678888888888888
Q ss_pred CccCCccccCCC--CCcEEecCCCCCcc-CC-------hhhcCCCCCcEEe
Q psy9862 158 FEVLPAEIGNLK--NLQILVLRENDLIE-IP-------KELGNLTRLRELH 198 (378)
Q Consensus 158 l~~l~~~l~~l~--~L~~L~l~~n~~~~-l~-------~~l~~l~~L~~L~ 198 (378)
++.+ ..+..+. +|++|++++|++.. +| ..+..+++|+.||
T Consensus 208 i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 208 LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8755 2233333 78888888888763 33 1256677777775
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.88 E-value=1.6e-05 Score=61.22 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=55.7
Q ss_pred hhhccCcccc--ccchhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccchHHhhhhhHHHHHHHh
Q psy9862 296 QLVLRENDLI--EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIR 373 (378)
Q Consensus 296 ~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~ 373 (378)
..+-+++.++ ++|..+. ++|++|+|++|+|+.++... +..+++|++|+|.+|+|. +.+...++..|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~~NP~~------CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGL--LDALPALRTAHLGANPWR------CDCRLVPLRAWLA 81 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTT--GGGCTTCCEEECCSSCCB------CSGGGHHHHHHHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhh--hhhccccCEEEecCCCee------ccCccHHHHHHHH
Confidence 5677788888 8886542 47999999999999998865 555669999999999994 4556888888887
Q ss_pred hh
Q psy9862 374 SE 375 (378)
Q Consensus 374 ~~ 375 (378)
..
T Consensus 82 ~~ 83 (130)
T 3rfe_A 82 GR 83 (130)
T ss_dssp TS
T ss_pred hC
Confidence 65
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=8.3e-06 Score=70.98 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=54.9
Q ss_pred CccchhhhhccCccccccc---hhhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCCCCCccch
Q psy9862 290 PIADQLQLVLRENDLIEIP---KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 358 (378)
Q Consensus 290 ~~~~l~~L~l~~n~l~~l~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n~~~~~~~ 358 (378)
.++.++.|++++|.++.++ ..+..+++|+.|+|++|+|+++ ..+..+..+ +|++|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccC-CcceEEccCCcCccccC
Confidence 4567888999999988654 5567899999999999999977 445666655 99999999999988765
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.001 Score=61.50 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=18.8
Q ss_pred cCCceeeccCC---cccCcCcccccccccccEEEccc
Q psy9862 29 KNPELELADKG---LSSFEELPGLMNMLYITRITLSH 62 (378)
Q Consensus 29 ~l~~L~l~~~~---~~~~~~~~~l~~~~~L~~L~ls~ 62 (378)
+|+.+.+.++. ++.++. ..+..|..|+.+.+..
T Consensus 88 ~L~~i~~~~n~p~~l~~Ig~-~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 88 SLKRVTIQDNKPSCVKKIGR-QAFMFCSELTDIPILD 123 (394)
T ss_dssp TCCEEEEGGGCCCCCCEECT-TTTTTCTTCCBCGGGT
T ss_pred cCceEeecCCCCCeeeEech-hhchhcccceeeccCC
Confidence 46777777654 333221 3455777777666544
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=6.1e-06 Score=68.06 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=63.9
Q ss_pred ccccccEEEcccc-cccCchhHHHHhhccccccCCccccCCCCCCCCccchhccccCCcccccCCCCCCCCCcccEEEcc
Q psy9862 51 NMLYITRITLSHN-KLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLT 129 (378)
Q Consensus 51 ~~~~L~~L~ls~~-~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l~l~~~~l~~~~~~~~~~~~L~~L~l~ 129 (378)
+-+.|+.|+|+++ .+.+++...+.++++.-+ .|++|+|+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~----------------------------------------~L~~L~L~ 78 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSK----------------------------------------HIEKFSLA 78 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS----------------------------------------CCCEEECT
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCC----------------------------------------CcCEEEcc
Confidence 5567888888875 777777777776665433 33444555
Q ss_pred CCCCCCC---CCCcccccCccccEEecCCCCCc-----cCCccccCCCCCcEEecCCCC---Cc-----cCChhhcCCCC
Q psy9862 130 YNNLNEQ---SLPGNFFMLETLRALYLGDNDFE-----VLPAEIGNLKNLQILVLREND---LI-----EIPKELGNLTR 193 (378)
Q Consensus 130 ~n~i~~~---~~~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~---~~-----~l~~~l~~l~~ 193 (378)
+|.+.+. .+...+..-+.|++|++++|.++ .+..++....+|++|+++++. +. .+...+...+.
T Consensus 79 ~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t 158 (197)
T 1pgv_A 79 NTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES 158 (197)
T ss_dssp TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS
T ss_pred CCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC
Confidence 5554431 11122333445666666666555 234445555667777776542 23 23444566667
Q ss_pred CcEEeccCCcC
Q psy9862 194 LRELHIQANRL 204 (378)
Q Consensus 194 L~~L~l~~~~l 204 (378)
|+.|+++.+.+
T Consensus 159 L~~L~l~~~~~ 169 (197)
T 1pgv_A 159 LLRVGISFASM 169 (197)
T ss_dssp CCEEECCCCCH
T ss_pred cCeEeccCCCc
Confidence 77777766544
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=2e-05 Score=63.70 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=65.1
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC-Ccc-CCccccCC----CCCcEEecCCCC-CccC
Q psy9862 112 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEV-LPAEIGNL----KNLQILVLREND-LIEI 184 (378)
Q Consensus 112 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~-l~~-l~~~l~~l----~~L~~L~l~~n~-~~~l 184 (378)
.+|..+..-..|++||+++|.+++..+ ..+.++++|++|++++|. ++. --..+..+ ++|++|++++|. ++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 345544444679999999999887443 457889999999999985 551 11223443 479999999985 7732
Q ss_pred -ChhhcCCCCCcEEeccCCc
Q psy9862 185 -PKELGNLTRLRELHIQANR 203 (378)
Q Consensus 185 -~~~l~~l~~L~~L~l~~~~ 203 (378)
-..+..+++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 2346778999999999884
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.0059 Score=55.88 Aligned_cols=57 Identities=7% Similarity=0.121 Sum_probs=35.2
Q ss_pred CccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeecc
Q psy9862 290 PIADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 349 (378)
Q Consensus 290 ~~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~ 349 (378)
.+.+|+.+.+.++.++.+++ ++.+|.+|+.+++..+ ++.++... +..+++|+.+.+-
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA--FKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCCCCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH--hhCCCCCCEEEEC
Confidence 45566677777777776654 4677788888888643 55554432 3444466666553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=1.9e-05 Score=65.07 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=60.1
Q ss_pred ccCCceeeccC-CcccCc--Ccc-cccccccccEEEcccccccCchhHHHHhhccccccCCccccCCCCCCCCccchhcc
Q psy9862 28 IKNPELELADK-GLSSFE--ELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103 (378)
Q Consensus 28 ~~l~~L~l~~~-~~~~~~--~~~-~l~~~~~L~~L~ls~~~l~~~~~~~~~~~l~~l~~~~l~~l~l~~~~~~~~l~~~l 103 (378)
..+++|+|+++ .+...+ .+. .+..-+.|+.|+|++|.+.+.+...+.+.+...+ .++ +|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~----------------tL~-~L 103 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP----------------SLR-VL 103 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS----------------SCC-EE
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC----------------ccC-eE
Confidence 45999999985 776422 122 4556789999999999999988888888777655 455 67
Q ss_pred ccCCcccc-----cCCCCCCCCCcccEEEccCC
Q psy9862 104 PCRMNRLS-----SLPRGFGAFPVLEVLDLTYN 131 (378)
Q Consensus 104 ~l~~~~l~-----~~~~~~~~~~~L~~L~l~~n 131 (378)
+|++|.|+ .+...+...+.|++|+++++
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77777766 23333444555666666654
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=1.9e-05 Score=63.83 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=20.9
Q ss_pred cccEEEccCCC-CCCCCCCcccccCccccEEecCCCC
Q psy9862 122 VLEVLDLTYNN-LNEQSLPGNFFMLETLRALYLGDND 157 (378)
Q Consensus 122 ~L~~L~l~~n~-i~~~~~~~~l~~l~~L~~L~l~~n~ 157 (378)
.|++|++++|. +++.. ...+..+++|++|++++|.
T Consensus 115 ~L~~L~Ls~C~~ITD~G-l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKG-IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHH-HHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHH-HHHHhcCCCCCEEECCCCC
Confidence 56667777764 55422 2335556677777777663
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.82 E-value=0.084 Score=48.06 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=39.8
Q ss_pred ccchhhhhccCccccccch-hhcCCCCCCEEEeecCCCCcCChhhccCCCccCcceeeccCC
Q psy9862 291 IADQLQLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 351 (378)
Q Consensus 291 ~~~l~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~l~~~~~l~~l~l~~n 351 (378)
+..++.+.+.. .++.++. ++.+|++|+.+++.++.++.++... +..+.+|+.+.+-.+
T Consensus 262 ~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a--F~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 262 CTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV--FMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTT--TTTCTTCCEEECCTT
T ss_pred eehhccccccc-cceeccccccccccccccccccccccceehhhh--hcCCCCCCEEEcCcc
Confidence 34455555543 3555544 5788999999999999898777643 555568888887543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0085 Score=45.77 Aligned_cols=53 Identities=38% Similarity=0.434 Sum_probs=24.0
Q ss_pred ccccCCcccc--cCCCCCCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCCC
Q psy9862 102 QFPCRMNRLS--SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 157 (378)
Q Consensus 102 ~l~l~~~~l~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~ 157 (378)
.++.+++.++ .+|..+. +++++|+|++|.+..+. +..|..+++|+.|++++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCC
Confidence 3455555555 5554322 23555555555554321 2334444444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.34 E-value=43 Score=23.51 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=20.0
Q ss_pred CCCCCcccEEEccCCCCCCCCCCcccccCccccEEecCCC
Q psy9862 117 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 156 (378)
Q Consensus 117 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n 156 (378)
|.++..|+.+.+..+-- .+. ..+|.++.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~v~-~Ig-~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIG-LLY-DGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTTSS-CCC-TTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCchh-eEc-HHHHhccCCccEEEEcCC
Confidence 66666666666655422 111 334556666666665443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.05 E-value=96 Score=21.62 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=25.4
Q ss_pred CcccccCccccEEecCCCCCccC-CccccCCCCCcEEecCC
Q psy9862 139 PGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRE 178 (378)
Q Consensus 139 ~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~ 178 (378)
...|.++.+|+.+.+..+ ++.| ..+|..+.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 456778888888888665 4444 33566677777776654
Done!