RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9862
(378 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 81.8 bits (202), Expect = 1e-16
Identities = 99/332 (29%), Positives = 157/332 (47%), Gaps = 61/332 (18%)
Query: 33 LELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTS 92
++L+ K +S + + + YI I LS+N+L G I I S+S
Sbjct: 74 IDLSGKNISG-KISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSS------------ 119
Query: 93 LPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
L +L L N S+PRG P LE LDL+ NN+ +P + +L+ L
Sbjct: 120 ---LRYLNLS---NNNFTGSIPRGS--IPNLETLDLS-NNMLSGEIPNDIGSFSSLKVLD 170
Query: 153 LGDNDFE-VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VLPP 209
LG N +P + NL +L+ L L N L+ +IP+ELG + L+ +++ N L+ +P
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230
Query: 210 EIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLPPE 267
EIG L +H L L N+L IP LGNL L+ L + N+L+ +PP
Sbjct: 231 EIGGLTSLNH-----------LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279
Query: 268 IGNLDLASHKSVLKMDF--NPWVTPIAD---QLQ----LVLRENDLI-EIPKELGNLSRL 317
I +L + ++ +D N I + QLQ L L N+ +IP L +L RL
Sbjct: 280 IFSL-----QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334
Query: 318 RELHIQANRLT-VLPPEIGN------LDLASH 342
+ L + +N+ + +P +G LDL+++
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Score = 71.0 bits (174), Expect = 3e-13
Identities = 99/332 (29%), Positives = 153/332 (46%), Gaps = 50/332 (15%)
Query: 60 LSHNKLKGEIIVQVIKGLSNSKY---------NYIPILHVTSLPILPFLFLQFPCRMNRL 110
LS+N L GEI I S+ K IP +T+L L FL L N+L
Sbjct: 147 LSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLA----SNQL 200
Query: 111 S-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL 168
+PR G L+ + L YNNL+ + +P L +L L L N+ +P+ +GNL
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259
Query: 169 KNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
KNLQ L L +N L IP + +L +L L + N L+ PE+ V+++
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL----------VIQLQN 309
Query: 228 NPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 286
L L N+ +IP L +L RL+ L + +N+ + P+ NL ++ +VL + N
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNN 367
Query: 287 WVTPIADQL-------QLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLP------ 331
I + L +L+L N L EIPK LG LR + +Q N + LP
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427
Query: 332 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQV 363
P + LD++++ +++ W P LQ+
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMP---SLQM 456
Score = 68.0 bits (166), Expect = 3e-12
Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 78/364 (21%)
Query: 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNY---------IP--ILHVTSLPI 95
L N+ + +TL+ N+L G+I ++ + + + K+ Y IP I +TSL
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 96 LPFLFLQFPCRMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 154
L ++ N L+ +P G L+ L L N L+ +P + F L+ L +L L
Sbjct: 241 LDLVY-------NNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLS 292
Query: 155 DNDFE-VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIG 212
DN +P + L+NL+IL L N+ +IP L +L RL+ L + +N+ + P+
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-- 350
Query: 213 NLDLASHKSVLKMDFNPW----------------LVLRENDLI-EIPKELGNLSRLRELH 255
NL ++ +VL + N L+L N L EIPK LG LR +
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410
Query: 256 IQANRLT-VLP------PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLV---------- 298
+Q N + LP P + LD++++ +++ W P L L
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
Query: 299 ------LRENDLIE------IPKELGNLSRLRELHIQANRLT-VLPPEIG------NLDL 339
L DL +P++LG+LS L +L + N+L+ +P E+ +LDL
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530
Query: 340 ASHK 343
+ ++
Sbjct: 531 SHNQ 534
Score = 61.4 bits (149), Expect = 4e-10
Identities = 105/383 (27%), Positives = 160/383 (41%), Gaps = 92/383 (24%)
Query: 58 ITLSHNKLKGEIIVQVIKGLS---------NSKYNYIPILHVTSLPILPFLFLQFPCRMN 108
I L +N L GEI + I GL+ N+ IP + +L L +LFL N
Sbjct: 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLY----QN 270
Query: 109 RLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIG 166
+LS +P + L LDL+ N+L+ + +P L+ L L+L N+F +P +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALT 329
Query: 167 NLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 225
+L LQ+L L N EIPK LG L L + N LT PE L S ++ K
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE----GLCSSGNLFK- 384
Query: 226 DFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLP------PEIGNLDLASHK 277
L+L N L EIPK LG LR + +Q N + LP P + LD++++
Sbjct: 385 -----LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439
Query: 278 SVLKMDFNPWVTP---------------------------------------------IA 292
+++ W P ++
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499
Query: 293 DQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLP------PEIGNLDLASHKS 344
+ +QL L EN L EIP EL + +L L + N+L+ +P P + LDL+ ++
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ- 558
Query: 345 VLKMDFNPWVTPIADQLQVGISH 367
L + + + +QV ISH
Sbjct: 559 -LSGEIPKNLGNVESLVQVNISH 580
Score = 33.3 bits (76), Expect = 0.26
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 28/136 (20%)
Query: 25 SKEIKNPELELADKGLSSFEELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYN 83
SK ++N L+L+ S +P L ++ + ++ LS NKL GEI + LS+ K
Sbjct: 474 SKRLEN--LDLSRNQFS--GAVPRKLGSLSELMQLKLSENKLSGEIPDE----LSSCK-- 523
Query: 84 YIPILHVTSLPILPFLFLQFPCRMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNF 142
+ SL + N+LS +P F PVL LDL+ N L+ + +P N
Sbjct: 524 -----KLVSLDL----------SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKNL 567
Query: 143 FMLETLRALYLGDNDF 158
+E+L + + N
Sbjct: 568 GNVESLVQVNISHNHL 583
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 74.6 bits (183), Expect = 9e-15
Identities = 78/271 (28%), Positives = 108/271 (39%), Gaps = 33/271 (12%)
Query: 71 VQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTY 130
+ + L + I L + + +NRL S L LDL
Sbjct: 66 LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN 125
Query: 131 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGN 190
NN+ + L+ L L DN E LP+ + NL NL+ L L NDL ++PK L N
Sbjct: 126 NNITDIPPLIGLL-KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184
Query: 191 LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSR 250
L+ L L + N+++ LPPEI L L L N +IE+ L NL
Sbjct: 185 LSNLNNLDLSGNKISDLPPEIELLSALEE-----------LDLSNNSIIELLSSLSNLKN 233
Query: 251 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE 310
L L + N+L LP IGNL L+ + N+ I
Sbjct: 234 LSGLELSNNKLEDLPESIGNL---------------------SNLETLDLSNNQISSISS 272
Query: 311 LGNLSRLRELHIQANRLTVLPPEIGNLDLAS 341
LG+L+ LREL + N L+ P I L L
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLL 303
Score = 46.9 bits (111), Expect = 1e-05
Identities = 69/237 (29%), Positives = 93/237 (39%), Gaps = 33/237 (13%)
Query: 114 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173
P + L L ++ LP + L +L L + NL L
Sbjct: 38 PDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPS 97
Query: 174 LVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGN-------LDLASHK------ 220
L L N L EL LT L L + N +T +PP IG LDL+ +K
Sbjct: 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS 157
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
+ + L L NDL ++PK L NLS L L + N+++ LPPEI L
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALE----- 212
Query: 281 KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+L L N +IE+ L NL L L + N+L LP IGNL
Sbjct: 213 ---------------ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 46.2 bits (109), Expect = 2e-05
Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 44/207 (21%)
Query: 146 ETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
E + L L +N+ + LP + GN+K L N L IP L + + EL I NR+
Sbjct: 199 EQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSIPATLPDTIQEMELSI--NRI 253
Query: 205 TVLPPE----IGNLDLASHKSVLKMDFNP----WLVLRENDLIEIPKELGNLSRLRELHI 256
T LP + +LDL +K + P +L + +N + +P L S + L++
Sbjct: 254 TELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNV 311
Query: 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSR 316
Q+N LT LP L L EN L +P L
Sbjct: 312 QSNSLTALP------------ETLPPGLK----------TLEAGENALTSLPASLP--PE 347
Query: 317 LRELHIQANRLTV----LPPEIGNLDL 339
L+ L + N++TV LPP I LD+
Sbjct: 348 LQVLDVSKNQITVLPETLPPTITTLDV 374
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 45.6 bits (108), Expect = 3e-05
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 132 NLNEQSL----PGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQILVLRENDLI-EIP 185
L+ Q L P + L L+++ L N +P +G++ +L++L L N IP
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483
Query: 186 KELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWL 231
+ LG LT LR L++ N L+ +P +G L H++ N L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRLL--HRASFNFTDNAGL 528
Score = 39.8 bits (93), Expect = 0.002
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 113 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIG 166
+P G+ LEVLDL+YN+ N S+P + L +LR L L N +PA +G
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
Score = 34.4 bits (79), Expect = 0.094
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 35/116 (30%)
Query: 160 VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLAS 218
+P +I L++LQ + L N + IP LG++T L L + N
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS----------- 481
Query: 219 HKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLT-VLPPEIGNLDL 273
IP+ LG L+ LR L++ N L+ +P +G L
Sbjct: 482 ----------------------IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
Score = 28.6 bits (64), Expect = 5.6
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 241 IPKELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVL 299
IP ++ L L+ +++ N + +PP +G++ + VL + +N
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSI---TSLEVLDLSYN-------------- 476
Query: 300 RENDLIEIPKELGNLSRLRELHIQANRLT-VLPPEIGNLDL 339
N I P+ LG L+ LR L++ N L+ +P +G L
Sbjct: 477 SFNGSI--PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 39.8 bits (94), Expect = 8e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 148 LRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRL 204
L++L L +N V+P L NL++L L N+L I E L LR L + N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 34.8 bits (81), Expect = 0.005
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQILVLRENDL 181
L+ LDL+ N L G F L L+ L L N+ + E L +L+ L L N+L
Sbjct: 2 LKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 34.4 bits (80), Expect = 0.005
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 170 NLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPE 210
NL+ L L N L IP L L+ L + N LT + PE
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42
Score = 32.1 bits (74), Expect = 0.038
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 193 RLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSR 250
L+ L + NRLTV+P L LK+ L L N+L I E L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGL------PNLKV-----LDLSGNNLTSISPEAFSGLPS 49
Query: 251 LRELHIQANRL 261
LR L + N L
Sbjct: 50 LRSLDLSGNNL 60
Score = 31.7 bits (73), Expect = 0.062
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 158
NRL+ +P G F P L+VLDL+ NNL S P F L +LR+L L N+
Sbjct: 10 NRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNNL 60
Score = 30.6 bits (70), Expect = 0.15
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 231 LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 267
L L N L IP L L+ L + N LT + PE
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42
Score = 30.6 bits (70), Expect = 0.15
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 297 LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 333
L L N L IP L L+ L + N LT + PE
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42
Score = 28.7 bits (65), Expect = 0.65
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 22/80 (27%)
Query: 250 RLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP 308
L+ L + NRLTV+P L LK+ L L N+L I
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGL------PNLKV--------------LDLSGNNLTSIS 40
Query: 309 KE-LGNLSRLRELHIQANRL 327
E L LR L + N L
Sbjct: 41 PEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 43.6 bits (102), Expect = 1e-04
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 89 HVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL 148
+TSLP+LP + N+L+SLP A P YNN SLP + L
Sbjct: 293 QLTSLPVLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNN-QLTSLPT---LPSGL 344
Query: 149 RALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT--- 205
+ L + DN LP L L R L +P + L+EL + NRLT
Sbjct: 345 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLTSLP 398
Query: 206 VLPPEIGNLDLASHK-SVLKMDFNPWLVLR--ENDLIEIPKELGNLSRLRELHIQANRLT 262
VLP E+ L ++ ++ + L M + L L N L +P+ L +LS ++++ N L+
Sbjct: 399 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458
Score = 42.8 bits (100), Expect = 3e-04
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 85 IPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
IP ++TSLP LP N+L+SLP P L L + N L LP +
Sbjct: 229 IPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---L 280
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L L++ N LP L+ L + +N L +P L +L + Q L
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSV---SDNQLASLPALPSELCKLWAYNNQLTSL 337
Query: 205 TVLPPEIGNLD-----LASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259
LP + L LAS ++ + W N L +P S L+EL + N
Sbjct: 338 PTLPSGLQELSVSDNQLASLPTLPSELYKLWAY--NNRLTSLP---ALPSGLKELIVSGN 392
Query: 260 RLT---VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSR 316
RLT VLP E+ L + S + + P + L L + N L +P+ L +LS
Sbjct: 393 RLTSLPVLPSELKEL-MVSGNRLTSLPMLP-----SGLLSLSVYRNQLTRLPESLIHLSS 446
Query: 317 LRELHIQANRLT 328
++++ N L+
Sbjct: 447 ETTVNLEGNPLS 458
Score = 31.3 bits (70), Expect = 0.95
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 32 ELELADKGLSSFEELPGLMNMLY-----ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIP 86
EL ++D L+S LP + L+ +T + + LK E+IV S ++ +P
Sbjct: 346 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLK-ELIV------SGNRLTSLP 398
Query: 87 IL------------HVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLN 134
+L +TSLP+LP L N+L+ LP ++L N L+
Sbjct: 399 VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458
Query: 135 EQSL 138
E++L
Sbjct: 459 ERTL 462
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 35.5 bits (83), Expect = 0.002
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 169 KNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP 209
NL+ L L N + ++P L NL L L + N++T L P
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.19
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP 185
L L L +N LP + NL NL+ L L N + ++
Sbjct: 3 LETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 28.6 bits (65), Expect = 0.55
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 296 QLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
L L N + ++P L NL L L + N++T L P
Sbjct: 5 TLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 28.2 bits (64), Expect = 0.70
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 266
L L N + ++P L NL L L + N++T L P
Sbjct: 6 LDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 36.4 bits (84), Expect = 0.025
Identities = 58/218 (26%), Positives = 84/218 (38%), Gaps = 61/218 (27%)
Query: 164 EIGNLK---NLQILVLRE-NDLIEIPKELGNLTRLRELHIQ-ANRLTVLPPEIG------ 212
EI +L NL+ L L + + L+E+P + L +L +L + L +LP I
Sbjct: 649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708
Query: 213 -NLDLASH-KSVLKMDFN-PWLVLRENDLIEIPKELGNLSRLRELHIQANR--------- 260
NL S KS + N WL L E + E P L L L EL + +
Sbjct: 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQ 767
Query: 261 -----LTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLS 315
+T+L P + L L+ S L+E+P + NL
Sbjct: 768 PLTPLMTMLSPSLTRLFLSDIPS-------------------------LVELPSSIQNLH 802
Query: 316 RLRELHIQANR-LTVLPPEIG-----NLDLASHKSVLK 347
+L L I+ L LP I +LDL S S L+
Sbjct: 803 KLEHLEIENCINLETLPTGINLESLESLDL-SGCSRLR 839
Score = 34.1 bits (78), Expect = 0.14
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 38/194 (19%)
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE 210
L L + E P+ + L+NL L+L E ++ + + LT L +T+L P
Sbjct: 730 LDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL---------MTMLSPS 779
Query: 211 IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANR-LTVLPPEIG 269
+ L L+ S L+E+P + NL +L L I+ L LP I
Sbjct: 780 LTRLFLSDIPS----------------LVELPSSIQNLHKLEHLEIENCINLETLPTGIN 823
Query: 270 -----NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQA 324
+LDL S S L+ F T I+D L L + E+P + S L L +
Sbjct: 824 LESLESLDL-SGCSRLRT-FPDISTNISD---LNLSRTGIEEVPWWIEKFSNLSFLDMNG 878
Query: 325 -NRLTVLPPEIGNL 337
N L + I L
Sbjct: 879 CNNLQRVSLNISKL 892
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 31.2 bits (71), Expect = 0.95
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 121 PVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDND-----FEVLPAEIGNLKNLQ 172
P LE L L N L S L L+ L L +N L + NL+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 173 ILVLREN--------DLIEIPKELGNLTRLRELHIQANRLT 205
+L L N L E L + L L++ N LT
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKS---LEVLNLGDNNLT 234
>gnl|CDD|149827 pfam08886, GshA, Glutamate-cysteine ligase. This is a rare family
of glutamate--cysteine ligases, EC:6.3.2.2, demonstrated
first in Thiobacillus ferrooxidans and present in a few
other Proteobacteria. It is the first of two enzymes for
glutathione biosynthesis. It is also called
gamma-glutamylcysteine synthetase. The structure of this
family has been solved, and is similar to that of human
glutathione synthetase and very different to
gamma-glutamylcysteine synthetase from Escherichia coli.
Length = 404
Score = 31.1 bits (71), Expect = 0.96
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 44/156 (28%)
Query: 130 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELG 189
+NNLN + LP A+ E + + N +L++ EN L
Sbjct: 51 FNNLNPEFLP---------LAVQAAMAAIEKICPDAKN-----LLLIPENHTRNT-FYLE 95
Query: 190 NLTRLRELHIQAN---RLTVLPPEIG---NLDLASHKSVL------------KMDFNPWL 231
N+ L+E+ QA R+ L PEI L+L + ++ F+P L
Sbjct: 96 NVAALKEILRQAGLNVRIGSLDPEITEPTTLELPNGDTLTLEPLVRKGGRLGLKGFDPCL 155
Query: 232 VLRENDLIE-IPKELGNLSRLRELHIQANRLTVLPP 266
+L NDL IP+ L LH Q +LPP
Sbjct: 156 ILLNNDLSSGIPE------ILEGLHEQ----YLLPP 181
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.2 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 191 LTRLRELHIQANRLTVLPPEI 211
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 248 LSRLRELHIQANRLTVLPPEI 268
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 314 LSRLRELHIQANRLTVLPPEI 334
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 26.2 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 191 LTRLRELHIQANRLTVLPPEI 211
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 248 LSRLRELHIQANRLTVLPPEI 268
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 314 LSRLRELHIQANRLTVLPPEI 334
L LREL + N+L+ LPP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
>gnl|CDD|227546 COG5221, DOP1, Dopey and related predicted leucine zipper
transcription factors [Transcription].
Length = 1618
Score = 29.5 bits (66), Expect = 3.8
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 122 VLEVLD-LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND 180
V ++LD L N + S L +Y L + + R D
Sbjct: 1499 VCKLLDILFLLNTEQFSTEEWTVFLGPRYRVYGEKASGGELVKSVLESLGGLL---RAKD 1555
Query: 181 LIEIP-KELGNLTRLRELHI 199
EIP K + ++ L
Sbjct: 1556 DKEIPSKVRRPIKKIPFLMP 1575
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 29.1 bits (65), Expect = 4.2
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 296 QLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
Q++ N LIE K++ N+ + E+ NRL+ LP E+ +L
Sbjct: 585 QIIYNANKLIEQSKKIDNM--IDEVSADNNRLSTLPLELRHL 624
>gnl|CDD|112432 pfam03614, Flag1_repress, Repressor of phase-1 flagellin.
Length = 165
Score = 28.0 bits (62), Expect = 6.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 1 MDQAPVSCIPVQGKISKAKKVLDESKEIKNPELELADKGLSSFEELPG 48
+ V +Q S K+L +E+ + L++ EEL
Sbjct: 36 SENGQVIIGYIQKFNSSENKILASDPFKGENRIEVKLERLATLEELIA 83
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 24.8 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 193 RLRELHIQANRLTVLPPEIGNL 214
L EL + N L+ LPP +GNL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 24.8 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 250 RLRELHIQANRLTVLPPEIGNL 271
L EL + N L+ LPP +GNL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Score = 24.8 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 316 RLRELHIQANRLTVLPPEIGNL 337
L EL + N L+ LPP +GNL
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,765,306
Number of extensions: 1977723
Number of successful extensions: 1654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1535
Number of HSP's successfully gapped: 66
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)