RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9862
(378 letters)
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 156 bits (397), Expect = 7e-47
Identities = 34/193 (17%), Positives = 52/193 (26%), Gaps = 31/193 (16%)
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L L + L A +G L L +L + +G L +L L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
T L +G L L +L + +G L +L LT L
Sbjct: 63 TRLKAAVGEL------PEKS-----KLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL 111
Query: 265 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQA 324
+G L +L +L ++ +G L +
Sbjct: 112 KAAVGEL------PEKS--------------KLQEIYQELTQLKAAVGELPDQSKQQQIY 151
Query: 325 NRLTVLPPEIGNL 337
LT L L
Sbjct: 152 QELTDLKTAFERL 164
Score = 142 bits (362), Expect = 1e-41
Identities = 35/200 (17%), Positives = 50/200 (25%), Gaps = 35/200 (17%)
Query: 118 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177
G P L Y L L L L + L A +G L L
Sbjct: 1 GELPEKSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 58
Query: 178 ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
+L + +G L +L LT L +G L L +
Sbjct: 59 YQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL------PEKS-----KLQEIYQE 107
Query: 238 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ- 296
L E+ +G L +L LT L +G L
Sbjct: 108 LTELKAAVGELPEKSKLQEIYQELTQLKAAVGELP---------------------DQSK 146
Query: 297 LVLRENDLIEIPKELGNLSR 316
+L ++ L
Sbjct: 147 QQQIYQELTDLKTAFERLGH 166
Score = 134 bits (341), Expect = 1e-38
Identities = 33/172 (19%), Positives = 48/172 (27%), Gaps = 31/172 (18%)
Query: 166 GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 225
G L L +L + +G L +L LT L +G L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL------PEKS- 53
Query: 226 DFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
L +L + +G L +L LT L +G L
Sbjct: 54 ----KLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL------PEKSK--- 100
Query: 286 PWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L +L E+ +G L +L LT L +G L
Sbjct: 101 -----------LQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGEL 141
Score = 118 bits (299), Expect = 2e-32
Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
L+ L G P L Y L L L L + L A +G
Sbjct: 60 QELTRLKAAVGELPEKSKLQEIYQELT--RLKAAVGELPEKSKLQEIYQELTELKAAVGE 117
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
L L +L ++ +G L + LT L L
Sbjct: 118 LPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERL 164
Score = 54.0 bits (131), Expect = 5e-09
Identities = 11/63 (17%), Positives = 14/63 (22%), Gaps = 2/63 (3%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
L+ L G P L Y L L L + L
Sbjct: 106 QELTELKAAVGELPEKSKLQEIYQEL--TQLKAAVGELPDQSKQQQIYQELTDLKTAFER 163
Query: 168 LKN 170
L +
Sbjct: 164 LGH 166
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 143 bits (362), Expect = 7e-40
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 44/242 (18%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
L P L+ + + L LP L L L N LPA I +
Sbjct: 91 VPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIAS 148
Query: 168 LKNLQILVLRE-NDLIEIPKELGN---------LTRLRELHIQANRLTVLPPEIGNLDLA 217
L L+ L +R +L E+P+ L + L L+ L ++ + LP I NL
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL--- 205
Query: 218 SHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA-NRLTVLPPEIGNLDLASH 276
LK L +R + L + + +L +L EL ++ L PP G
Sbjct: 206 ---QNLKS-----LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR----- 252
Query: 277 KSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN-RLTVLPPEIG 335
+ ++ + ++L+ +P ++ L++L +L ++ L+ LP I
Sbjct: 253 APLKRLI--------------LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 336 NL 337
L
Sbjct: 299 QL 300
Score = 138 bits (351), Expect = 2e-38
Identities = 47/260 (18%), Positives = 82/260 (31%), Gaps = 43/260 (16%)
Query: 91 TSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNE-QSLPGNFFML--ET 147
T+L + Q+ N + + ++
Sbjct: 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG 82
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
AL L P + L +LQ + + L+E+P + L L + N L L
Sbjct: 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142
Query: 208 PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGN---------LSRLRELHIQA 258
P I +L + ++ +L E+P+ L + L L+ L ++
Sbjct: 143 PASIASL-----NRLRELSIR-----ACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLR 318
+ LP I NL LK L +R + L + + +L +L
Sbjct: 193 TGIRSLPASIANL------QNLKS--------------LKIRNSPLSALGPAIHHLPKLE 232
Query: 319 ELHIQA-NRLTVLPPEIGNL 337
EL ++ L PP G
Sbjct: 233 ELDLRGCTALRNYPPIFGGR 252
Score = 128 bits (323), Expect = 3e-34
Identities = 58/240 (24%), Positives = 87/240 (36%), Gaps = 48/240 (20%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL-GDNDFEVLPAEIG 166
L LP F LE L L N L ++LP + L LR L + + LP +
Sbjct: 114 AGLMELPDTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 167 N---------LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLA 217
+ L NLQ L L + +P + NL L+ L I+ + L+ L P I +L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL--- 228
Query: 218 SHKSVLKMDFNPWLVLRE-NDLIEIPKELGNLSRLRELHIQ-ANRLTVLPPEIGNLDLAS 275
L+ L LR L P G + L+ L ++ + L LP +I L
Sbjct: 229 ---PKLE-----ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT--- 277
Query: 276 HKSVLKMDFNPWVTPIADQLQ-LVLREN-DLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
QL+ L LR +L +P + L + + + L
Sbjct: 278 ------------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
Score = 78.8 bits (195), Expect = 1e-16
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGD-NDFEVLPA 163
R + LS+L P LE LDL + P F L+ L L D ++ LP
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 164 EIGNLKNLQILVLREN-DLIEIPKELGNLTRLRELHIQANRLTVLPPE 210
+I L L+ L LR +L +P + L + + + L
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 130 bits (329), Expect = 3e-35
Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 58/294 (19%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110
+ + LS L IP + +LP L FL++ +N L
Sbjct: 48 QTYRVNNLDLSGLNLPKPY--------------PIP-SSLANLPYLNFLYIG---GINNL 89
Query: 111 S-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL 168
+P L L +T+ N++ ++P ++TL L N LP I +L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 169 KNLQILVLRENDLI-EIPKELGNLTRLRE-LHIQANRLT-VLPPEIGNLDLASHKSVLKM 225
NL + N + IP G+ ++L + I NRLT +PP NL+LA
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-------- 200
Query: 226 DFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
++ L N L + G+ +++H+ N L ++G K++ +D
Sbjct: 201 ----FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLD- 250
Query: 285 NPWVTPIADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
LR N + +P+ L L L L++ N L P+ GNL
Sbjct: 251 --------------LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Score = 111 bits (279), Expect = 4e-28
Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 28/215 (13%)
Query: 138 LPGNFFMLETLRALYLGDNDFE---VLPAEIGNLKNLQILVLRENDLI--EIPKELGNLT 192
L + L L + +P+ + NL L L + + + IP + LT
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 193 RLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSR 250
+L L+I ++ +P + + L L N L +P + +L
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQI------KTLV-----TLDFSYNALSGTLPPSISSLPN 150
Query: 251 LRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL------QLVLREND 303
L + NR++ +P G+ + + + + N I + L N
Sbjct: 151 LVGITFDGNRISGAIPDSYGS--FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208
Query: 304 LI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L + G+ +++H+ N L ++G
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Score = 98.8 bits (247), Expect = 1e-23
Identities = 50/190 (26%), Positives = 69/190 (36%), Gaps = 41/190 (21%)
Query: 160 VLPAEIGNLKNLQILVLRENDL---IEIPKELGNLTRLRELHIQ-ANRLT-VLPPEIGNL 214
VL + L L +L IP L NL L L+I N L +PP I L
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 215 DLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLPPEIGNLD 272
+ L +L + ++ IP L + L L N L+ LPP I +L
Sbjct: 101 ------TQLH-----YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL- 148
Query: 273 LASHKSVLKMDFNPWVTPIADQLQLVLRENDLI-EIPKELGNLSRLRE-LHIQANRLT-V 329
L + N + IP G+ S+L + I NRLT
Sbjct: 149 -----PNLV--------------GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 330 LPPEIGNLDL 339
+PP NL+L
Sbjct: 190 IPPTFANLNL 199
Score = 73.0 bits (180), Expect = 1e-14
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 30/173 (17%)
Query: 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIP--ILHVTSLPILPFLFLQFP 104
P + ++ + IT N++ G IP + L + +
Sbjct: 143 PSISSLPNLVGITFDGNRISGA----------------IPDSYGSFSKL--FTSMTISR- 183
Query: 105 CRMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLP 162
NRL+ +P F L +DL+ N L E F + + ++L N L
Sbjct: 184 ---NRLTGKIPPTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 163 AEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
++G KNL L LR N + +P+ L L L L++ N L P+ GNL
Sbjct: 239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Score = 49.8 bits (120), Expect = 6e-07
Identities = 33/161 (20%), Positives = 51/161 (31%), Gaps = 49/161 (30%)
Query: 45 ELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFP 104
++P L + + LS N L+G+
Sbjct: 189 KIPPTFANLNLAFVDLSRNMLEGDA----------------------------------- 213
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPA 163
FG+ + + L N+L L + + L L L +N LP
Sbjct: 214 ---------SVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 164 EIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANR 203
+ LK L L + N+L EIP+ GNL R N+
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 134 bits (339), Expect = 6e-35
Identities = 70/306 (22%), Positives = 106/306 (34%), Gaps = 66/306 (21%)
Query: 32 ELELADKGLSSF-EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV 90
L + D L+S P L + +S N+L + I +
Sbjct: 65 TLVIPDNNLTSLPALPPEL------RTLEVSGNQLT-----SLPVLPPGLLELSIFSNPL 113
Query: 91 TSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
T LP LP + N+L+SLP L+ L ++ N L SLP L L
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPG---LQELSVSDNQLA--SLPALPSELCKL-- 166
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE 210
+ +N LP L+ L + +N L +P L +L + NRLT LP
Sbjct: 167 -WAYNNQLTSLPMLPSGLQELS---VSDNQLASLPTLPSELYKLWAYN---NRLTSLPAL 219
Query: 211 IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 270
L L++ N L +P L +EL + NRLT LP
Sbjct: 220 PSGLK--------------ELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSG 262
Query: 271 LDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 330
L L L + N L +P+ L +LS ++++ N L+
Sbjct: 263 L-----------------------LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299
Query: 331 PPEIGN 336
+
Sbjct: 300 TLQALR 305
Score = 127 bits (320), Expect = 2e-32
Identities = 54/233 (23%), Positives = 79/233 (33%), Gaps = 57/233 (24%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
N+L+SLP L + +L +LP L L++ N LP
Sbjct: 88 VSGNQLTSLPVLPPGLLELSIFSNPLTHL--PALPSG------LCKLWIFGNQLTSLPVL 139
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L + +N L +P L +L + N+LT LP L
Sbjct: 140 PPGLQELS---VSDNQLASLPALPSELCKLWAYN---NQLTSLPMLPSGLQ--------- 184
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L + +N L +P L +L + NRLT LP L
Sbjct: 185 -----ELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLPALPSGL------------- 223
Query: 285 NPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+L++ N L +P L +EL + NRLT LP L
Sbjct: 224 ----------KELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSGL 263
Score = 123 bits (311), Expect = 3e-31
Identities = 60/236 (25%), Positives = 83/236 (35%), Gaps = 42/236 (17%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ L++LP A + L + NNL SLP LR L + N LP
Sbjct: 47 VGESGLTTLPDCLPAH--ITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSLPVL 99
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L L I L +P + L +L I N+LT LP L
Sbjct: 100 PPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVLPPGLQ--------- 144
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L + +N L +P L +L + N+LT LP L L +
Sbjct: 145 -----ELSVSDNQLASLPALPSELCKLWAYN---NQLTSLPMLPSGL------QELSVSD 190
Query: 285 NPWVT--PIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
N + + +L L N L +P L+EL + NRLT LP L
Sbjct: 191 NQLASLPTLPSELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVLPSEL 243
Score = 119 bits (299), Expect = 1e-29
Identities = 49/219 (22%), Positives = 74/219 (33%), Gaps = 41/219 (18%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
VL++ + L +LP + L + DN+ LPA L+ L+ + N L
Sbjct: 42 NAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLE---VSGNQLT 94
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP 242
+P L L L LP + L + N L +P
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW-----------------IFGNQLTSLP 137
Query: 243 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL----QLV 298
L+EL + N+L LP L L N +T + +L
Sbjct: 138 VLPPG---LQELSVSDNQLASLPALPSEL------CKLWAYNNQ-LTSLPMLPSGLQELS 187
Query: 299 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+ +N L +P L +L + NRLT LP L
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYN---NRLTSLPALPSGL 223
Score = 85.3 bits (211), Expect = 3e-18
Identities = 53/264 (20%), Positives = 92/264 (34%), Gaps = 28/264 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPILH 89
EL ++D L+S LP + L+ +N+L + + GL + N +
Sbjct: 145 ELSVSDNQLASLPALPSELCKLW-----AYNNQL--TSLPMLPSGLQELSVSDNQL---- 193
Query: 90 VTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
SLP LP + NRL+SLP L+ L ++ N L SLP L+
Sbjct: 194 -ASLPTLPSELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLT--SLPVL---PSELK 244
Query: 150 ALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP 209
L + N LP L +L + N L +P+ L +L+ ++++ N L+
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301
Query: 210 EIGN---LDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 266
+ +++ D RE + + + A+R +
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361
Query: 267 EIGNLDLASHKSVLKMDFNPWVTP 290
E + L N
Sbjct: 362 EDNADAFSLFLDRLSETENFIKDA 385
Score = 63.8 bits (155), Expect = 3e-11
Identities = 23/109 (21%), Positives = 31/109 (28%), Gaps = 25/109 (22%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
L + E+ L +P L + L I N LT LP L
Sbjct: 45 LNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPEL------------------- 83
Query: 291 IADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
L + N L +P L L L LP + L +
Sbjct: 84 ----RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWI 128
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 133 bits (336), Expect = 3e-34
Identities = 71/310 (22%), Positives = 109/310 (35%), Gaps = 61/310 (19%)
Query: 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106
P L N + + LS N L G I P + SL L L L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTI----------------PSS-LGSLSKLRDLKLW---- 450
Query: 107 MNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE 164
+N L +P+ LE L L +N+L +P L + L +N +P
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 165 IGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHKSV 222
IG L+NL IL L N IP ELG+ L L + N +P + +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 223 LKMDFNPW---------LVLRENDLI---EIPKELGNLSRLRELHIQANRLT-VLPPEIG 269
+ + N L ++L LS +I + P
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 270 NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT 328
N S++ +D + N L IPKE+G++ L L++ N ++
Sbjct: 630 NN-----GSMMFLD---------------MSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 329 -VLPPEIGNL 337
+P E+G+L
Sbjct: 670 GSIPDEVGDL 679
Score = 127 bits (322), Expect = 2e-32
Identities = 91/333 (27%), Positives = 143/333 (42%), Gaps = 50/333 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NY-- 84
L+++ S+ +P L + + + +S NKL G+ I + K N
Sbjct: 204 FLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 85 --IPILHVTSLPILPFLFLQFPCRMNRLS-SLPRG-FGAFPVLEVLDLTYNNLNEQSLPG 140
IP L + SL L N+ + +P GA L LDL+ N+ ++P
Sbjct: 261 GPIPPLPLKSLQYLSL-------AENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GAVPP 312
Query: 141 NFFMLETLRALYLGDNDFE-VLPAE-IGNLKNLQILVLRENDLI-EIPKELGNLT-RLRE 196
F L +L L N+F LP + + ++ L++L L N+ E+P+ L NL+ L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 197 LHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLREL 254
L + +N + + P + + L+ L L+ N +IP L N S L L
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNT----LQ-----ELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 255 HIQANRLT-VLPPEIGNLDLASHKSVLKMDFN------PWVTPIADQLQ-LVLRENDLI- 305
H+ N L+ +P +G+L S LK+ N P L+ L+L NDL
Sbjct: 424 HLSFNYLSGTIPSSLGSL---SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 306 EIPKELGNLSRLRELHIQANRLT-VLPPEIGNL 337
EIP L N + L + + NRLT +P IG L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Score = 122 bits (308), Expect = 1e-30
Identities = 66/326 (20%), Positives = 116/326 (35%), Gaps = 58/326 (17%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L ++ L ++ G + + + + LS N + G + + +
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV--------------VGWVLSD 175
Query: 92 SLPILPFLFLQFPCRMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
L L + N++S + LE LD++ NN + +P L+
Sbjct: 176 GCGELKHLAISG----NKISGDVD--VSRCVNLEFLDVSSNNFS-TGIP-FLGDCSALQH 227
Query: 151 LYLGDNDFE-VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLT-VL 207
L + N I L++L + N + IP L L+ L + N+ T +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 208 PPEI-GNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VL 264
P + G L L L N +P G+ S L L + +N + L
Sbjct: 286 PDFLSGAC------DTLT-----GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 265 PPE-IGNLDLASHKSVLKMDFN-------PWVTPIADQLQ-LVLRENDLI-EIPKELGN- 313
P + + + VL + FN +T ++ L L L N+ I L
Sbjct: 335 PMDTLLKM---RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 314 -LSRLRELHIQANRLT-VLPPEIGNL 337
+ L+EL++Q N T +PP + N
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNC 417
Score = 110 bits (278), Expect = 1e-26
Identities = 59/326 (18%), Positives = 115/326 (35%), Gaps = 57/326 (17%)
Query: 32 ELELADKGLSSF--EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILH 89
++L+ K L+ L+++ + + LS++ + G +
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV----------------SGFK 97
Query: 90 VTSLPILPFLFLQFPCRMNRLS-SLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 146
L L L N LS + G+ L+ L+++ N L+ L
Sbjct: 98 --CSASLTSLDLSR----NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 147 TLRALYLGDNDFE-VLPAEI---GNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQA 201
+L L L N L+ L + N + ++ + L L + +
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209
Query: 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANR 260
N + P +G+ S L+ L + N L + + + + L+ L+I +N+
Sbjct: 210 NNFSTGIPFLGDC------SALQH-----LDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 261 LT-VLPPEI----GNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLI-EIPKELGN 313
+PP L LA +K + +++ D L L L N +P G+
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENK--FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 314 LSRLRELHIQANRLT-VLPPE-IGNL 337
S L L + +N + LP + + +
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKM 342
Score = 92.3 bits (230), Expect = 2e-20
Identities = 65/291 (22%), Positives = 104/291 (35%), Gaps = 66/291 (22%)
Query: 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCR 106
GL N + I+LS+N+L GEI P + L L L L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEI----------------P-KWIGRLENLAILKL----S 522
Query: 107 MNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE 164
N S ++P G L LDL N N ++P F + N
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGK----IAANFIAGKRYVY 577
Query: 165 IGNLKNLQILVLRENDLI---EIPKELGNLTRLRELHIQANRLT-VLPPEIGNLDLASHK 220
I N + N L ++L L+ +I + P N
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-----G 632
Query: 221 SVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKS 278
S++ +D + N L IPKE+G++ L L++ N ++ +P E+G+L +
Sbjct: 633 SMMFLD------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-----RG 681
Query: 279 VLKMDFNPWVTPIADQLQLVLRENDLI-EIPKELGNLSRLRELHIQANRLT 328
+ +D L N L IP+ + L+ L E+ + N L+
Sbjct: 682 LNILD---------------LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 38.0 bits (89), Expect = 0.004
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 69/163 (42%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103
P N + + +S+N L G I
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYI---------------------------------- 648
Query: 104 PCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 163
P+ G+ P L +L+L +N+++ +P
Sbjct: 649 ----------PKEIGSMPYLFILNLGHNDISGS------------------------IPD 674
Query: 164 EIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLT 205
E+G+L+ L IL L N L IP+ + LT L E+ + N L+
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 127 bits (320), Expect = 2e-32
Identities = 45/354 (12%), Positives = 110/354 (31%), Gaps = 53/354 (14%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS---NSKYNYIP-- 86
++ ++ +M + + + + ++ E I + + + +Y
Sbjct: 187 QIGQLSNNITFVS--KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 87 ILHVTSLPILPFLFLQFPCR-----------------MNRLSSLPR---------GFGAF 120
++ L + + NR S +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND 180
++++ + YNNL + + ++ L L N E G+ L L L N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 181 LIEIPKEL-GNLTRLRELHIQANRLTVLPP--EIGNLDLASHKSVLKMDFNPWLVLREND 237
+ EIP G ++ L N+L +P + ++ S S + +N + +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV---SVMSAIDFSYNEIGSVDGKN 421
Query: 238 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGN-------LDLAS-HKSVLKMDFNPWVT 289
+ + +++ N+++ P E+ + ++L + + +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 290 PIADQLQ----LVLRENDLIEIPKELG--NLSRLRELHIQANRLTVLPPEIGNL 337
+ LR N L ++ + L L + + N + P + N
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535
Score = 115 bits (290), Expect = 2e-28
Identities = 31/245 (12%), Positives = 77/245 (31%), Gaps = 27/245 (11%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP--GNFFMLETLRALYLGDNDFEVLPAEI 165
N P+G A E + + + + ++ D + +
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
Query: 166 GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP----EIGNLDLASHKS 221
+ N++ + K + LT+LR+ ++ + E N + A
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239
Query: 222 VLKMDFN-----PWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
+ ++ + + + ++P L L ++ +++ NR + +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 276 HKSVLKMDFNPWVTPIADQLQ-LVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPP 332
V + ++Q + + N+L + L + +L L N+L P
Sbjct: 300 DAPVGE------------KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347
Query: 333 EIGNL 337
G+
Sbjct: 348 AFGSE 352
Score = 105 bits (263), Expect = 9e-25
Identities = 34/249 (13%), Positives = 79/249 (31%), Gaps = 31/249 (12%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYI----PILHVTSLP 94
+LP + + + + L++N++ I + N + I S+
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 95 ILPFLFLQF----PCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
++ + + L + ++L+ N +++ F L +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSS 461
Query: 151 LYLGDN--------DFEVLPAEIGNLKNLQILVLRENDLIEIPKEL--GNLTRLRELHIQ 200
+ L N + N L + LR N L ++ + L L + +
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521
Query: 201 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQAN 259
N + P + N ++ + N + E P+ + L +L I +N
Sbjct: 522 YNSFSKFPTQPLNS-----STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 260 RLTVLPPEI 268
+ + +I
Sbjct: 577 DIRKVNEKI 585
Score = 103 bits (260), Expect = 2e-24
Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 43/252 (17%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L A L + ++ ++ I S+N++ + + L + +
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFK-------- 431
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFM 144
+ + L N++S P+ F L ++L N L E + NF
Sbjct: 432 -GINVSSINL----SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 145 LETLRALYLGDNDFEVLPAEI--GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQAN 202
L ++ L N L + L L + L N + P + N + L+ I+
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 203 R-------LTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
R L P I L L + ND+ ++ +++ + L
Sbjct: 547 RDAQGNRTLREWPEGITLC------PSLT-----QLQIGSNDIRKVNEKI--TPNISVLD 593
Query: 256 IQANRLTVLPPE 267
I+ N +
Sbjct: 594 IKDNPNISIDLS 605
Score = 40.4 bits (95), Expect = 9e-04
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 18/109 (16%)
Query: 244 ELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLREN 302
L + R+ L ++ + +P IG L + VL + + + N
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQL---TELEVLALGSHG------------EKVN 120
Query: 303 DLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 351
+ + PK + + + ++K N
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCIN 167
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 127 bits (320), Expect = 4e-32
Identities = 51/326 (15%), Positives = 104/326 (31%), Gaps = 57/326 (17%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
+ L F L M+ + + HNK++ ++
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVK------------ 596
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAF-PVLEVLDLTYNNLNEQSLPGNFFM--LETL 148
L L L + N++ +P F AF +E L ++N L + +P F + +
Sbjct: 597 ----LTDLKLDY----NQIEEIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVM 646
Query: 149 RALYLGDNDFEVLPAEIG------NLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQA 201
++ N I N + L N++ + P E + + + +
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKEL--GNLSRLRELHIQAN 259
N +T +P ++K+ + + LR N L + + L L + + N
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLT---TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763
Query: 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRE 319
+ P + N S + + L + P + L +
Sbjct: 764 CFSSFPTQPLNS---SQLKAFGIRHQ----------RDAEGNRILRQWPTGITTCPSLIQ 810
Query: 320 LHIQANRLTVLPPEIGN----LDLAS 341
L I +N + + ++ LD+A
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYILDIAD 836
Score = 124 bits (313), Expect = 3e-31
Identities = 43/263 (16%), Positives = 80/263 (30%), Gaps = 39/263 (14%)
Query: 100 FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 159
+ + L P +++ + YNNL E + + L L N
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
Query: 160 VLPAEIGNLKNLQILVLRENDLIEIPKELGNLTR-LRELHIQANRLTVLPPEIGNLDLAS 218
L G L L L N + EIP++ T + L N+L +P +
Sbjct: 587 HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV-Y 644
Query: 219 HKSVLKMDFNP---------------------WLVLRENDLIEIPKE-LGNLSRLRELHI 256
+ +N + L N++ + P E S + + +
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKEL--GNL 314
N +T +P ++K+ + + LR N L + + L
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLL------------TTIDLRFNKLTSLSDDFRATTL 752
Query: 315 SRLRELHIQANRLTVLPPEIGNL 337
L + + N + P + N
Sbjct: 753 PYLSNMDVSYNCFSSFPTQPLNS 775
Score = 107 bits (268), Expect = 2e-25
Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 45/274 (16%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L + L + ++ + + S+NK+ + + + K
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYK---------- 671
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFM 144
+ L + N + P F + + L+ N + + GN+
Sbjct: 672 -GINASTVTLSY----NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 145 LETLRALYLGDNDFEVLPAEI--GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQAN 202
L + L N L + L L + + N P + N ++L+ I+
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 203 R-------LTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELH 255
R L P I L L + ND+ ++ ++L +L L
Sbjct: 787 RDAEGNRILRQWPTGITTC------PSLI-----QLQIGSNDIRKVDEKL--TPQLYILD 833
Query: 256 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
I N + + + VL D +
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Score = 104 bits (260), Expect = 2e-24
Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 36/252 (14%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIG 166
+ + R FG + + + F + L L + P E+
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMK 415
Query: 167 NLKNLQILVLR-------ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+K + L+ N + I K + LT+L+ ++ + T + D S
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475
Query: 220 KSVLKMDFNP---------WLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIG 269
+ + + L + ++P L +L L+ L+I NR
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535
Query: 270 NL-DLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE--LGNLSRLRELHIQAN 325
+ LA + ++Q + N+L E P L + +L L N
Sbjct: 536 DWTRLADDEDTGP------------KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583
Query: 326 RLTVLPPEIGNL 337
++ L G
Sbjct: 584 KVRHL-EAFGTN 594
Score = 88.0 bits (218), Expect = 5e-19
Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 27/217 (12%)
Query: 47 PGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTSLPILPFLFL 101
+ + +TLS+N+++ ++ S N + + SL +
Sbjct: 667 MDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725
Query: 102 QFPC------RMNRLSSLPR--GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL 153
R N+L+SL P L +D++YN S P L+A +
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGI 783
Query: 154 GDNDF-------EVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTV 206
P I +L L + ND+ ++ ++L +L L I N
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNIS 841
Query: 207 LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK 243
+ + ++ + + ++ +R D + I +
Sbjct: 842 ID--VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 81.8 bits (202), Expect = 5e-17
Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 23/181 (12%)
Query: 160 VLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLAS 218
++ N + L L +P +G LT L+ L + TV G+ +L
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373
Query: 219 HKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 278
S + + L RL + + + P E+ + S S
Sbjct: 374 DMSEER--------KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRIS 424
Query: 279 VLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 338
+ Q+ N + I K + L++L+ ++ + T + D
Sbjct: 425 L-------------KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
Query: 339 L 339
Sbjct: 472 A 472
Score = 32.2 bits (73), Expect = 0.29
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 25/109 (22%)
Query: 244 ELGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRE 301
+L N R+ L + +P IG L +L+ L
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLT---------------------ELKVLSFGT 356
Query: 302 NDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 350
+ + G+ ++ R + + L + + D
Sbjct: 357 HSETVSGRLFGDEELTPDM--SEERKHRIRMHYKKMFLDYDQRLNLSDL 403
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 118 bits (298), Expect = 7e-30
Identities = 72/353 (20%), Positives = 119/353 (33%), Gaps = 89/353 (25%)
Query: 26 KEIKNPELELADKGLSSFEELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNY 84
+ + N L+ + S+ E+P N+ T + ++ + + + +
Sbjct: 6 RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA-VSR 64
Query: 85 IPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
+ L LSSLP LE L + N+L LP
Sbjct: 65 LRDCLDRQAHELE-------LNNLGLSSLPELPPH---LESLVASCNSL--TELPELPQS 112
Query: 145 L-----------------ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPK- 186
L L L + +N E LP E+ N L+I+ + N L ++P
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171
Query: 187 ------------------ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 228
EL NL L ++ N L LP +L+
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE------------- 218
Query: 229 PWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 288
+V N L E+P EL NL L ++ N L LP +L+
Sbjct: 219 -SIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLE---------------- 260
Query: 289 TPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 341
L +R+N L ++P+ +L+ L + L+ LPP + L+ +S
Sbjct: 261 -------ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
Score = 115 bits (289), Expect = 1e-28
Identities = 77/329 (23%), Positives = 132/329 (40%), Gaps = 41/329 (12%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPILH-VTSLPILPF 98
E+LP L N ++ I + +N LK + + L + N + L + +LP L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLK--KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA 199
Query: 99 LFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 158
++ N L LP + LE + N L L L +Y +N
Sbjct: 200 IYADN----NSLKKLPDLPLS---LESIVAGNNIL---EELPELQNLPFLTTIYADNNLL 249
Query: 159 EVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLAS 218
+ LP +L+ L +R+N L ++P+ +LT L + L+ LPP + L+ +S
Sbjct: 250 KTLPDLPPSLEALN---VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
Query: 219 HKSVLKMDFNP---WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
++ D P L + N LIE+P L L N L +P NL
Sbjct: 307 NEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNL---- 359
Query: 276 HKSVLKMDFNPWVT--PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
L +++NP I + ++ + + L E+P+ N L++LH++ N L P
Sbjct: 360 --KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLREFPDI 414
Query: 334 IGNLDLASHKSVLKMDFNPWVTPIADQLQ 362
++ L+M+ V P +
Sbjct: 415 PESV------EDLRMNSERVVDPYEFAHE 437
Score = 103 bits (259), Expect = 1e-24
Identities = 69/311 (22%), Positives = 111/311 (35%), Gaps = 51/311 (16%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFL 101
S ++LP L L I +N+L+ + ++ L Y + LP LP
Sbjct: 164 SLKKLPDLPPSL--EFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 218
Query: 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 161
N L LP P L + N L ++LP + +L AL + DN L
Sbjct: 219 SIVAGNNILEELP-ELQNLPFLTTIYADNNLL--KTLPD---LPPSLEALNVRDNYLTDL 272
Query: 162 PAEIGNLKNLQILVLRENDLIEIPKELGNL--------------TRLRELHIQANRLTVL 207
P +L L + + L E+P L L L EL++ N+L L
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL 332
Query: 208 PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
P L+ L+ N L E+P+ NL ++LH++ N L P
Sbjct: 333 PALPPRLE--------------RLIASFNHLAEVPELPQNL---KQLHVEYNPLREFPDI 375
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANR 326
+++ S L V + L+ L + N L E P + + +L + + R
Sbjct: 376 PESVEDLRMNSHLAE-----VPELPQNLKQLHVETNPLREFPDIPES---VEDLRMNSER 427
Query: 327 LTVLPPEIGNL 337
+
Sbjct: 428 VVDPYEFAHET 438
Score = 90.8 bits (226), Expect = 3e-20
Identities = 60/286 (20%), Positives = 104/286 (36%), Gaps = 59/286 (20%)
Query: 43 FEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQ 102
EELP L N+ ++T I +N LK + + + + ++T LP LP
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDNYLTDLPELPQSLTF 281
Query: 103 FPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 162
N S L L L+ + N + SL +L L + +N LP
Sbjct: 282 LDVSENIFSGLSELPPN---LYYLNASSNEIR--SLCDL---PPSLEELNVSNNKLIELP 333
Query: 163 AEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
A L + L+ N L E+P+ NL ++LH++ N L P ++
Sbjct: 334 ALPPRL---ERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFPDIPESV------ED 381
Query: 223 LKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 282
L+M+ + L E+P+ NL ++LH++ N L P ++ L+M
Sbjct: 382 LRMN---------SHLAEVPELPQNL---KQLHVETNPLREFPDIPESV------EDLRM 423
Query: 283 DFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
+ V P + +L + + +
Sbjct: 424 NSERVVDPYEFAHET----------------TDKLEDDVFEHHHHH 453
Score = 74.3 bits (183), Expect = 9e-15
Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 45/180 (25%)
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTV-LPPEIGNLDLASH 219
+ + LQ + ++L E+P E N+ E + + PP G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ----- 57
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279
RE + + L + EL + L+ LP +L+
Sbjct: 58 --------------REMAVSRLRDCLDR--QAHELELNNLGLSSLPELPPHLE------- 94
Query: 280 LKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
LV N L E+P+ +L L + L+ LPP + L +
Sbjct: 95 ----------------SLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138
Score = 58.9 bits (143), Expect = 8e-10
Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 41/201 (20%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPILH 89
L + D L+ ELP +T + +S N G + ++ L N+ N I L
Sbjct: 261 ALNVRDNYLTDLPELPQ-----SLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSL- 312
Query: 90 VTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
P L L + N+L LP LE L ++N+L +P + L+
Sbjct: 313 CDLPPSLEELNVSN----NKLIELPALPPR---LERLIASFNHL--AEVPEL---PQNLK 360
Query: 150 ALYLGDNDFEVLPAEIGNLK----------------NLQILVLRENDLIEIPKELGNLTR 193
L++ N P +++ NL+ L + N L E P ++
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE- 419
Query: 194 LRELHIQANRLTVLPPEIGNL 214
+L + + R+
Sbjct: 420 --DLRMNSERVVDPYEFAHET 438
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 116 bits (291), Expect = 5e-29
Identities = 65/266 (24%), Positives = 99/266 (37%), Gaps = 52/266 (19%)
Query: 99 LFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 157
L L N++ + F LE+L L+ N++ G F L L L L DN
Sbjct: 69 LNLHE----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR 123
Query: 158 FEVLPAEI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQ-ANRLTVLPPEI--- 211
+P L L+ L LR N + IP + LR L + RL+ +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 212 -GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 270
NL +L L +L EIP L L +L EL + N L+ + P
Sbjct: 184 LSNLR--------------YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS-- 226
Query: 271 LDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLT 328
F + LQ L + ++ + I + NL L E+++ N LT
Sbjct: 227 -------------FQGLM-----HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 329 VLPPEIGNLDLASHKSVLKMDFNPWV 354
+LP ++ H + + NPW
Sbjct: 269 LLPHDL--FTPLHHLERIHLHHNPWN 292
Score = 100 bits (251), Expect = 1e-23
Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHV---TSLPILPFLFLQFPCR 106
+ L N+++ I V K L + + N+I + + L L L L
Sbjct: 66 TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD--- 121
Query: 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPA 163
NRL+++P G F L+ L L N + +S+P F + +LR L LG+ +
Sbjct: 122 -NRLTTIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 164 EI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
L NL+ L L +L EIP L L +L EL + N L+ + P
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS----------- 226
Query: 223 LKMDFNPW-----LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
F L + ++ + I + NL L E+++ N LT+LP ++ H
Sbjct: 227 ----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL--FTPLHH 280
Query: 277 KSVLKMDFNPWV 288
+ + NPW
Sbjct: 281 LERIHLHHNPWN 292
Score = 87.1 bits (216), Expect = 4e-19
Identities = 53/237 (22%), Positives = 76/237 (32%), Gaps = 67/237 (28%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L +P G +L+L N + Q + N F
Sbjct: 50 CVRKNLREVPDGI--STNTRLLNLHENQI--QIIKVNSF--------------------- 84
Query: 165 IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI--GNLDLASHKS 221
+L++L+IL L N + I L L L + NRLT +P L
Sbjct: 85 -KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE--- 140
Query: 222 VLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQ-ANRLTVLPPEI-GNLDLASHKS 278
L LR N + IP + LR L + RL+ + L
Sbjct: 141 ---------LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL------- 184
Query: 279 VLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
L+ L L +L EIP L L +L EL + N L+ + P
Sbjct: 185 --------------SNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS 226
Score = 83.6 bits (207), Expect = 7e-18
Identities = 51/200 (25%), Positives = 76/200 (38%), Gaps = 26/200 (13%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHV---TSL 93
+F L L + L N+L I LS K N I + +
Sbjct: 107 AFNGLANL------NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 94 PILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
P L L L + RLS + G F L L+L NL + +P N L L L
Sbjct: 160 PSLRRLDLG---ELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIP-NLTPLIKLDELD 213
Query: 153 LGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPE 210
L N + L +LQ L + ++ + I + NL L E+++ N LT+LP +
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 211 IGNLDLASHKSVLKMDFNPW 230
+ H + + NPW
Sbjct: 274 L--FTPLHHLERIHLHHNPW 291
Score = 35.5 bits (82), Expect = 0.028
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 249 SRLRELHIQANRLTVLPPEI----GNLDLASHK--SVLKMDFNPWVTPIADQLQ-LVLRE 301
++ ++ L +P I L+L ++ + F L+ L L
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL-----RHLEILQLSR 97
Query: 302 NDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 333
N + I L+ L L + NRLT +P
Sbjct: 98 NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 114 bits (287), Expect = 2e-28
Identities = 59/266 (22%), Positives = 94/266 (35%), Gaps = 52/266 (19%)
Query: 99 LFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 157
L L N + + F LEVL L N++ + G F L +L L L DN
Sbjct: 80 LNLME----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW 134
Query: 158 FEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQ-ANRLTVLPPEI--- 211
V+P+ L L+ L LR N + IP + L L + +L +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 212 -GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 270
NL +L L ++ ++P L L L EL + N + P
Sbjct: 195 LFNLK--------------YLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG--- 236
Query: 271 LDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLT 328
F+ L+ L + + + I + L+ L EL++ N L+
Sbjct: 237 ------------SFHGLS-----SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 329 VLPPEIGNLDLASHKSVLKMDFNPWV 354
LP ++ + L + NPW
Sbjct: 280 SLPHDL--FTPLRYLVELHLHHNPWN 303
Score = 97.5 bits (243), Expect = 1e-22
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 43/252 (17%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHV---TSLPILPFLFLQFPCR 106
+ L N ++ I + L + + N I + V L L L L
Sbjct: 77 TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--- 132
Query: 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPA 163
N L+ +P G F L L L N + +S+P F + +L L LG+ E +
Sbjct: 133 -NWLTVIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 164 EI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
L NL+ L L ++ ++P L L L EL + N + P
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG------------ 236
Query: 223 LKMDFNPW-----LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
F+ L + + + I + L+ L EL++ N L+ LP ++ +
Sbjct: 237 ---SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRY 291
Query: 277 KSVLKMDFNPWV 288
L + NPW
Sbjct: 292 LVELHLHHNPWN 303
Score = 89.0 bits (221), Expect = 1e-19
Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 38/230 (16%)
Query: 120 FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRE 178
+ T L +P R L L +N+ +++ A+ +L +L++L L
Sbjct: 53 SNQFSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108
Query: 179 NDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI--GNLDLASHKSVLKMDFNPWLVLRE 235
N + +I L L L + N LTV+P L L LR
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE------------LWLRN 156
Query: 236 NDLIEIPKE-LGNLSRLRELHIQ-ANRLTVLPPEI----GNLDLASHKSVLKMDFN---- 285
N + IP + L L + +L + NL L +
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------KYLNLGMCNIKD 210
Query: 286 -PWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 333
P +TP+ +L + N EI LS L++L + ++++++
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Score = 83.3 bits (206), Expect = 1e-17
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 26/200 (13%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHV---TSL 93
+F L L + L N L I + LS + N I + +
Sbjct: 118 AFNGLASL------NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 94 PILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
P L L L + +L + G F L+ L+L N+ + +P N L L L
Sbjct: 171 PSLMRLDLG---ELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMP-NLTPLVGLEELE 224
Query: 153 LGDNDFEVLPAE-IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPE 210
+ N F + L +L+ L + + + I + L L EL++ N L+ LP +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 211 IGNLDLASHKSVLKMDFNPW 230
+ + L + NPW
Sbjct: 285 L--FTPLRYLVELHLHHNPW 302
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 115 bits (289), Expect = 4e-28
Identities = 71/336 (21%), Positives = 127/336 (37%), Gaps = 60/336 (17%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTS--- 92
SF+ L L + + N + G I + GL N KY ++ + +T+
Sbjct: 323 FSFQWLKCL------EHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 93 ----LPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLET 147
L L L N++S + F LEVLDL N + ++ + LE
Sbjct: 376 VSLAHSPLHILNLTK----NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431
Query: 148 LRALYLGDNDFEVLPAE-IGNLKNLQILVLREN---DLIEIPKELGNLTRLRELHIQANR 203
+ +YL N + L + +LQ L+LR ++ P L L L + N
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491
Query: 204 LTVLPPEIGNLDLASHKS--VLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANR 260
+ + ++ L + +L + N L ++ L LS L L++++N
Sbjct: 492 IANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 261 LTVLPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRL 317
+P E +L +L+ + L N+L +P N L
Sbjct: 548 FDEIPVEVFKDL---------------------FELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 318 RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
+ L++Q N +T + ++ + + L M FNP+
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAF-RNLTELDMRFNPF 621
Score = 107 bits (268), Expect = 2e-25
Identities = 63/300 (21%), Positives = 101/300 (33%), Gaps = 48/300 (16%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLP 114
IT + L+HN+L+ + S L L + F N +S L
Sbjct: 27 ITVLNLTHNQLRR-LPAANFTRYSQ----------------LTSLDVGF----NTISKLE 65
Query: 115 RG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 172
P+L+VL+L +N L++ S F L L+L N + + KNL
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 173 ILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPW 230
L L N L L L+EL + N++ L E + +S LK
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS----LK-----K 175
Query: 231 LVLRENDLIEIPKE-LGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWV 288
L L N + E + RL L + +L L ++ + L + +
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235
Query: 289 TPIADQLQ---------LVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPE-IGNL 337
T L L N+L + L +L ++ N + L + L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Score = 94.3 bits (235), Expect = 4e-21
Identities = 54/329 (16%), Positives = 113/329 (34%), Gaps = 67/329 (20%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110
+ + + L++ +L + ++ L+N+ + L L ++L
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTS--------------IRNLSLSN----SQL 234
Query: 111 SSLPRGFGA---FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIG 166
S+ + L +LDL+YNNLN +F L L +L N+ + L +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
Query: 167 NLKNLQILVLRENDLIE----------IPKELGNLTRLRELHIQANRLTVLPPEIGN--- 213
L N++ L L+ + + L L L+++ N + + +
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 214 ----LDLA----SHKSVLKMDFNP-------WLVLRENDLIEIPKE-LGNLSRLRELHIQ 257
L L+ S +++ F L L +N + +I + L L L +
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 258 ANRLTVLPP--EIGNLDLASHKSVLKMDFNPWVTPIADQLQ-------LVLREN---DLI 305
N + E L + + + +N ++ + L+LR ++
Sbjct: 414 LNEIGQELTGQEWRGL---ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 306 EIPKELGNLSRLRELHIQANRLTVLPPEI 334
P L L L + N + + ++
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDM 499
Score = 93.1 bits (232), Expect = 8e-21
Identities = 44/245 (17%), Positives = 83/245 (33%), Gaps = 34/245 (13%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDL 181
EV D ++ L +P + + L L N L A L L + N +
Sbjct: 6 HEVADCSHLKL--TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 182 IEI-PKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLI 239
++ P+ L L+ L++Q N L+ L + + L L L N +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC------TNLTE-----LHLMSNSIQ 110
Query: 240 EIPKE-LGNLSRLRELHIQANRLTVLPPE-------IGNLDLASHK--SVLKMDFNPWVT 289
+I L L + N L+ + L L+++K ++ + + +
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 290 PIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLT-VLPPEIGNLDLASHKSVL 346
L+ L L N + E + RL L + +L L ++ + L
Sbjct: 171 S---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 347 KMDFN 351
+ +
Sbjct: 228 SLSNS 232
Score = 63.5 bits (155), Expect = 4e-11
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 25/174 (14%)
Query: 170 NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFN 228
+ ++ L ++P +L T + L++ N+L LP S L
Sbjct: 5 SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRY------SQLT---- 52
Query: 229 PWLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
L + N + ++ P+ L L+ L++Q N L+ L + ++ + L + N
Sbjct: 53 -SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELHLMSNSI 109
Query: 288 VTPIADQLQ-------LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 333
+ L L N L L L+EL + N++ L E
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Score = 49.6 bits (119), Expect = 1e-06
Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 26/152 (17%)
Query: 192 TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSR 250
+LT +P ++ ++ L L N L +P S+
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPT-NITV------------LNLTHNQLRRLPAANFTRYSQ 50
Query: 251 LRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQ-------LVLREN 302
L L + N ++ L PE L VL + N L L N
Sbjct: 51 LTSLDVGFNTISKLEPELCQKL---PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Query: 303 DLIEIPKE-LGNLSRLRELHIQANRLTVLPPE 333
+ +I L L + N L+
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 26/130 (20%)
Query: 33 LELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTS 92
L K + + L + ++ + L N I V+V K L
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFE------------- 561
Query: 93 LPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF--MLETLR 149
L + L N L++LP F L+ L+L N + S+ F L
Sbjct: 562 ---LKIIDLGL----NNLNTLPASVFNNQVSLKSLNLQKNLI--TSVEKKVFGPAFRNLT 612
Query: 150 ALYLGDNDFE 159
L + N F+
Sbjct: 613 ELDMRFNPFD 622
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 110 bits (277), Expect = 8e-28
Identities = 50/320 (15%), Positives = 106/320 (33%), Gaps = 57/320 (17%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHVTSLPIL 96
+ E+ N ++ + LK + + + + N K N + + L
Sbjct: 1 AIHEIKQNGNRY--KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57
Query: 97 P---FLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL 153
L L N L + L LDL N + Q L ++ L+
Sbjct: 58 TKLELLNLSS----NVLYETL-DLESLSTLRTLDLNNNYV--QELLV----GPSIETLHA 106
Query: 154 GDNDFEVLPAEIGNLKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIG 212
+N+ + + + + L N + + + G +R++ L ++ N + +
Sbjct: 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-- 162
Query: 213 NLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 272
+LA+ L+ L L+ N + ++ ++ ++L+ L + +N+L + PE +
Sbjct: 163 --ELAASSDTLE-----HLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 273 LASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
+ + LR N L+ I K L L ++ N
Sbjct: 215 ---------------------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253
Query: 332 PEIGNLDLASHKSVLKMDFN 351
++V K
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK 273
Score = 109 bits (274), Expect = 2e-27
Identities = 44/258 (17%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 112 SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 170
++ ++ +T ++L + +L ++ L L N + A +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 171 LQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP--PEIGNLDLASHK-SVLKMDF 227
L++L L N L E +L +L+ LR L + N + L P I L A++ S +
Sbjct: 60 LELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118
Query: 228 NP---WLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPE--IGNLDLASHKSVLK 281
+ L N + + + G SR++ L ++ N + + + D H L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH---LN 175
Query: 282 MDFNPWVTPIADQLQLV------LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 335
+ +N + + Q+ L N L + E + + + + ++ N+L ++ +
Sbjct: 176 LQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 336 NLDLASHKSVLKMDFNPW 353
+ + N +
Sbjct: 235 FS---QNLEHFDLRGNGF 249
Score = 83.1 bits (206), Expect = 4e-18
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 21/204 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL-----SNSKYNYIP 86
L+L + + P + + ++N + + +G +N+K +
Sbjct: 84 TLDLNNNYVQELLVGPSI------ETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLR 136
Query: 87 ILHVTSLPILPFLFLQFPCRMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
L + +L L+ N + ++ + LE L+L YN + + G
Sbjct: 137 DLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVV- 189
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L+ L L N + E + + + LR N L+ I K L L ++ N
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249
Query: 205 TVLPPEIGNLDLASHKSVLKMDFN 228
++V K
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVK 273
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 109 bits (275), Expect = 4e-27
Identities = 58/273 (21%), Positives = 99/273 (36%), Gaps = 41/273 (15%)
Query: 77 LSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE 135
L++ + I + L++ F N + LP F P+L VL L N+L
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQNVPLLTVLVLERNDL-- 129
Query: 136 QSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELGNLTR 193
SLP F L L + +N+ E + + +LQ L L N L + L +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187
Query: 194 LRELHIQANRLTVLPPEIG--NLDLASHK-SVLKMDFNP---WLVLRENDLIEIPKELGN 247
L ++ N L+ L I LD + + +V++ N L L+ N+L + L N
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLN 246
Query: 248 LSRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLI 305
L E+ + N L + + +L+ L + N L+
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQ---------------------RLERLYISNNRLV 285
Query: 306 EIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 338
+ + L+ L + N L + D
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Score = 95.1 bits (237), Expect = 6e-22
Identities = 52/298 (17%), Positives = 91/298 (30%), Gaps = 66/298 (22%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHV---TS 92
F+ +P L T + L N L + + N + + +
Sbjct: 111 HVFQNVPLL------TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 93 LPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
L L L NRL+ + P L +++YN L +L + L
Sbjct: 164 TTSLQNLQLSS----NRLTHVD--LSLIPSLFHANVSYNLL--STLAIPIA----VEELD 211
Query: 153 LGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI- 211
N V+ + L IL L+ N+L + L N L E+ + N L +
Sbjct: 212 ASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 212 GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 271
+ L+ L + N L+ + + L+ L + N L +
Sbjct: 269 VKM------QRLE-----RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317
Query: 272 DLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
D +L+ L L N ++ + L L+ L + N
Sbjct: 318 D---------------------RLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352
Score = 84.7 bits (210), Expect = 2e-18
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 17/195 (8%)
Query: 56 TRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR 115
+S+N L I ++ L S +N I ++ L L LQ N L+
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDAS-HNSINVVRGPVNVELTILKLQH----NNLTDTA- 242
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIL 174
+P L +DL+YN L + + + F+ ++ L LY+ +N L + L++L
Sbjct: 243 WLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
Query: 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR 234
L N L+ + + RL L++ N + L L + N W
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHHTLKNLTLSHNDW---D 352
Query: 235 ENDLIEIPKELGNLS 249
N L + + + +
Sbjct: 353 CNSLRALFRNVARPA 367
Score = 75.9 bits (187), Expect = 2e-15
Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 37/208 (17%)
Query: 131 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQILVLRENDLIEIPKE-L 188
+ + N +++ +V E L N +I+ + + + ++P L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 189 GNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGN 247
+ ++ L++ ++ + A + ++ L + N + +P N
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYA----FAYAHT-IQ-----KLYMGFNAIRYLPPHVFQN 115
Query: 248 LSRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLI 305
+ L L ++ N L+ LP I N +L L + N+L
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNT---------------------PKLTTLSMSNNNLE 154
Query: 306 EIPKE-LGNLSRLRELHIQANRLTVLPP 332
I + + L+ L + +NRLT +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Score = 62.0 bits (151), Expect = 8e-11
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 37/171 (21%)
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
++ I + D+ +++ L + + + + + LP + L S + ++
Sbjct: 23 FYDVHIDMQ-TQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAAL----LDSFRQ-VE--- 72
Query: 228 NPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFN 285
L L + + EI +++L++ N + LPP + N+
Sbjct: 73 --LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-------------- 116
Query: 286 PWVTPIADQLQ-LVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEI 334
L LVL NDL +P+ + N +L L + N L + +
Sbjct: 117 -------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 111 bits (279), Expect = 6e-27
Identities = 55/322 (17%), Positives = 102/322 (31%), Gaps = 46/322 (14%)
Query: 42 SFEELPGLMNMLY-ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLF 100
+++ L N L ++ +L ++ V+ ++ + P L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 101 LQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFE 159
L+ + P LE LDL+ N L+ + + F +L+ L L N
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 160 VLPAEIGNLKNLQILVLRENDLIEIPKE--LGNLTRLRELHIQANRLTVLPPE-IGNLDL 216
+ + L+ L+ L + ++L ++ + +L L L I V L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-- 444
Query: 217 ASHKSVLKMDFNPWLVLRENDLIE--IPKELGNLSRLRELHIQANRLTVLPPE-IGNLDL 273
S L+ L + N E +P L L L + +L L P +L
Sbjct: 445 ----SSLE-----VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS- 494
Query: 274 ASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLP 331
LQ L + N+ + L+ L+ L N +
Sbjct: 495 --------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 332 PEIGNLDLASHKSVLKMDFNPW 353
+ S + L + N +
Sbjct: 535 KQELQ-HFPSSLAFLNLTQNDF 555
Score = 98.9 bits (247), Expect = 9e-23
Identities = 51/305 (16%), Positives = 100/305 (32%), Gaps = 48/305 (15%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLP 114
+ LS N L+ + L L L + ++
Sbjct: 30 TKNLDLSFNPLRH-LGSYSFFSFPE----------------LQVLDLSR----CEIQTIE 68
Query: 115 RG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQ 172
G + + L L LT N + G F L +L+ L + + L IG+LK L+
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 173 ILVLRENDL--IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
L + N + ++P+ NLT L L + +N++ + +L + +L +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLS---- 181
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE-----IGNLDLASHKSVLKMDFN 285
L L N + I RL +L ++ N ++ + + L++ +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 286 PWVTPIADQLQ----LVLRENDL-------IEIPKELGNLSRLRELHIQANRLTVLPPEI 334
L+ L + E L +I L+ + + + + +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 335 GNLDL 339
N
Sbjct: 302 YNFGW 306
Score = 96.3 bits (240), Expect = 6e-22
Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 40/303 (13%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL-----SNSKYNYIPILHVT--SLP 94
F + P L + + R+T + NK + L S + ++ +
Sbjct: 315 KFGQFPTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 95 ILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 154
L +L L F N + ++ F LE LD ++NL + S F L L L +
Sbjct: 374 SLKYLDLSF----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 155 DNDFEVLPAE-IGNLKNLQILVLRENDLIE--IPKELGNLTRLRELHIQANRLTVLPPE- 210
V L +L++L + N E +P L L L + +L L P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 211 IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIG 269
+L S L+ L + N+ + L+ L+ L N + +
Sbjct: 490 FNSL------SSLQ-----VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 270 NLDLASHKSVLKMDFNPW---------VTPIADQLQLVLRENDLI-EIPKELGNLSRLRE 319
S + L + N + + I DQ QL++ + P + + +
Sbjct: 539 Q-HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLS 596
Query: 320 LHI 322
L+I
Sbjct: 597 LNI 599
Score = 93.9 bits (234), Expect = 4e-21
Identities = 52/332 (15%), Positives = 98/332 (29%), Gaps = 53/332 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY--------N 83
+L + L+S E P + ++ + + ++HN ++ + + L+N ++
Sbjct: 104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 84 YIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF 143
I + L +P L L +N ++ + G L L L N + +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 144 MLETLRALYLGDNDF-------EVLPAEIGNLKNLQILVLRENDL----IEIPKELGNLT 192
L L L +F + + + L NL I R L +I LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 193 RLRELHIQANRLTVLPPEIGN-----LDLA--SHKSVLKMDFNPWLVLRENDL-IEIPKE 244
+ + + + + N L+L + L
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 245 LGNLSRLRELHIQANRLT---VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLR 300
+L L L + N L+ L+ L L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT---------------------TSLKYLDLS 381
Query: 301 ENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
N +I + L +L L Q + L +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Score = 81.6 bits (202), Expect = 5e-17
Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 43/226 (19%)
Query: 125 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQILVLRENDLIE 183
N +P N + + L L N L + LQ+L L ++
Sbjct: 11 TYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 184 I-PKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNP------------ 229
I +L+ L L + N + L L S L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHL 123
Query: 230 ----WLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 283
L + N + ++P+ NL+ L L + +N++ + +L + +L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL--- 178
Query: 284 FNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 329
L L L N + I RL +L ++ N ++
Sbjct: 179 ----------NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 110 bits (276), Expect = 2e-26
Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 48/313 (15%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLS----NSKYNYIPILHVTSLPILPFLFLQFPCR 106
+ ++ ++L+ + + + V K + + LP L L L
Sbjct: 283 CLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM--- 337
Query: 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAEI 165
N+ S + A P L LDL+ N L+ + +LR L L N ++ A
Sbjct: 338 -NKGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395
Query: 166 GNLKNLQILVLRENDLIEIPKE--LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL 223
L+ LQ L + + L + + +L +L L I + I + + L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI--FLGLTSLNTL 453
Query: 224 KMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKM 282
KM N + + N + L L + +L + + L
Sbjct: 454 KMAGNSFKD------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH---------- 497
Query: 283 DFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLA 340
+LQ L + N+L+ + L L L NR+ +
Sbjct: 498 -----------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL--QHFP 544
Query: 341 SHKSVLKMDFNPW 353
+ + N
Sbjct: 545 KSLAFFNLTNNSV 557
Score = 101 bits (254), Expect = 1e-23
Identities = 45/266 (16%), Positives = 81/266 (30%), Gaps = 29/266 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIP 86
L + L F L ++ ++ +TL+ NK I L + Y N +
Sbjct: 311 SLSIIRCQLKQFPTL----DLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALS 363
Query: 87 ILHVTSLPILPFLFLQ-FPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
S L L+ N + F L+ LD ++ L + F L
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 146 ETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEI--PKELGNLTRLRELHIQAN 202
E L L + + ++ I L +L L + N + N T L L +
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 203 RLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRL 261
+L + + + + L + N+L+ + L L L NR+
Sbjct: 484 QLEQISWGV----FDTLHRLQ------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Query: 262 TVLPPEIGNLDLASHKSVLKMDFNPW 287
+ + + N
Sbjct: 534 ETSKGIL--QHFPKSLAFFNLTNNSV 557
Score = 100 bits (250), Expect = 3e-23
Identities = 47/242 (19%), Positives = 80/242 (33%), Gaps = 34/242 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +LS +P + +DL++N L +F L+ L L + E + +
Sbjct: 18 CMDQKLSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 165 -IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKS 221
L +L L+L N + LT L L +L L IG L
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL------I 128
Query: 222 VLKMDFNPWLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279
LK L + N + ++P NL+ L + + N + +
Sbjct: 129 TLK-----KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN------------ 171
Query: 280 LKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
D L L + N + I + +L EL ++ N + + +L
Sbjct: 172 ---DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 340 AS 341
A
Sbjct: 229 AG 230
Score = 99.0 bits (247), Expect = 1e-22
Identities = 50/308 (16%), Positives = 96/308 (31%), Gaps = 44/308 (14%)
Query: 60 LSHNKLKGEIIVQVIKGLSNS------KYNYIPILHVTSLPILP---FLFLQFPCRMNRL 110
KL +V + +S +N + IL S +L L +
Sbjct: 18 CMDQKLS-----KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR----CEI 68
Query: 111 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNL 168
++ + L L LT N + S PG+F L +L L + L + IG L
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 169 KNLQILVLRENDL--IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
L+ L + N + ++P NLT L + + N + + L + +
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND--LQFLRENPQVNLS 185
Query: 227 FNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS-HKSVLKMDFN 285
L + N + I + +L EL ++ N + + +LA H L +
Sbjct: 186 ----LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 286 PWVTPIAD-------------QLQLVLRENDLIEI-PKELGNLSRLRELHIQANRLTVLP 331
+ + L + + L+ + + + + L
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301
Query: 332 PEIGNLDL 339
+
Sbjct: 302 DVPKHFKW 309
Score = 98.2 bits (245), Expect = 2e-22
Identities = 52/370 (14%), Positives = 111/370 (30%), Gaps = 37/370 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY--------N 83
L + L+S E P + ++ + ++ ++HN + + L+N +
Sbjct: 108 NLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 84 YIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF 143
I + + L P + L +N + + L L L N + +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226
Query: 144 MLETLRALYLGDNDFEVL-------PAEIGNLKNLQILVLR--ENDLIEI-PKELGNLTR 193
L L L +F+ P+ + L ++ I R + + L
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286
Query: 194 LRELHIQANRLTVLPPEIGNLDLA----SHKSVLKMDFNPWLVLRENDL----IEIPKEL 245
+ + + + L + + + L+ L I +
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKK 346
Query: 246 GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN-----PWVTPIADQLQ-LVL 299
L L L + N L+ + + L + FN ++LQ L
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406
Query: 300 RENDLIEIPKE--LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPI 357
+ + L + + +L +L L I + I + + LKM N +
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDNT 464
Query: 358 ADQLQVGISH 367
+ ++
Sbjct: 465 LSNVFANTTN 474
Score = 82.0 bits (203), Expect = 4e-17
Identities = 34/234 (14%), Positives = 59/234 (25%), Gaps = 58/234 (24%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L+L+ G M + + + H+ LK L
Sbjct: 380 HLDLSFNGAIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK------------ 425
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
L +L + + G F L L + N+ + +L F L
Sbjct: 426 ----LLYLDISY----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 151 LYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLP 208
L L E + + L LQ+L + N+L+ + L L L NR+
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 209 PEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLT 262
+ L ++ N +
Sbjct: 538 GIL---------------------------------QHFPKSLAFFNLTNNSVA 558
Score = 60.8 bits (148), Expect = 3e-10
Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 19/186 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS---------NSKY 82
L+ L E +++ + + +S+ K + GL+ NS
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFK 461
Query: 83 NYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN 141
+ + L FL L +L + G F L++L++++NNL L +
Sbjct: 462 DNTLSNVFANTTNLTFLDLSK----CQLEQISWGVFDTLHRLQLLNMSHNNLL--FLDSS 515
Query: 142 FFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHI 199
+ L +L L N E + K+L L N + I + L ++E
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575
Query: 200 QANRLT 205
+
Sbjct: 576 FLVNVE 581
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 105 bits (265), Expect = 2e-26
Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 49/260 (18%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L ++P G + + L N ++ +F L L+L N + A
Sbjct: 18 CPQQGLQAVPVGI--PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAA 74
Query: 165 I-GNLKNLQILVLRENDLI-EIPKE-LGNLTRLRELHIQANRLTVLPPEI----GNLDLA 217
L L+ L L +N + + L RL LH+ L L P + L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-- 132
Query: 218 SHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
+L L++N L +P + +L L L + NR++ +P
Sbjct: 133 ------------YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-------- 172
Query: 277 KSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI 334
F L L+L +N + + +L RL L++ AN L+ LP E
Sbjct: 173 -------FRGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 335 GNLDLASHKSVLKMDFNPWV 354
L L+++ NPWV
Sbjct: 221 --LAPLRALQYLRLNDNPWV 238
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/191 (13%), Positives = 40/191 (20%), Gaps = 79/191 (41%)
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRL 204
E + +P I Q + L N + +P L L + +N L
Sbjct: 11 EPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN-RLTV 263
+ L+ L +L + N +L
Sbjct: 69 ARIDAAA---------------------------------FTGLALLEQLDLSDNAQLRS 95
Query: 264 LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQ 323
+ P L RL LH+
Sbjct: 96 VDPAT------------------------------------------FHGLGRLHTLHLD 113
Query: 324 ANRLTVLPPEI 334
L L P +
Sbjct: 114 RCGLQELGPGL 124
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 104 bits (262), Expect = 2e-25
Identities = 52/284 (18%), Positives = 101/284 (35%), Gaps = 43/284 (15%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 163
L+S+P G ++ LDL+ N + + + L+AL L N +
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 164 EI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPP-----------E 210
+ +L +L+ L L N L + L+ L L++ N L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 211 IGNLDLASHKSVLKMDFNP-----WLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVL 264
+ ++ + + + DF L + +DL + L ++ + L + + +L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 265 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ---------------LVLRENDLIEIPK 309
+D+ S L++ T +L + + + L ++ K
Sbjct: 214 LE--IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
Query: 310 ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
L +S L EL N+L +P I D + + + NPW
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGI--FDRLTSLQKIWLHTNPW 313
Score = 69.4 bits (170), Expect = 2e-13
Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 39/224 (17%)
Query: 32 ELELADKGLSS-----FEELPGLMNMLYITRITLSHNKLK---------GEIIVQVIKGL 77
L+L+ LS+ F+ L L T + L N K +Q+++
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSL------TFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Query: 78 SNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQ 136
+ + I L L L + + L S + + L L
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEID----ASDLQSYEPKSLKSIQNVSHLILHMKQH--I 211
Query: 137 SLPGNFF-MLETLRALYLGDNDFEVLPAE---------IGNLKNLQILVLRENDLIEIPK 186
L F + ++ L L D D + + + + + + L ++ K
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
Query: 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
L ++ L EL N+L +P I D + + + NPW
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGI--FDRLTSLQKIWLHTNPW 313
Score = 53.6 bits (129), Expect = 3e-08
Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 47/227 (20%)
Query: 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRE 235
L IP L ++ L + NR+T + DL ++ LVL
Sbjct: 38 GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNS----DLQRCVNLQ------ALVLTS 85
Query: 236 NDLIEIPKEL-GNLSRLRELHIQANRLTVLP-----------------------PEIGNL 271
N + I ++ +L L L + N L+ L E
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 272 DLASHKSVLKMDFNPWVTPIADQL--------QLVLRENDLIEIPKE-LGNLSRLRELHI 322
+ +L++ T I + +L + +DL + L ++ + L +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 323 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVL 369
+ +L +D+ S L++ T +L G ++ L
Sbjct: 206 HMKQHILLLE--IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Score = 29.7 bits (67), Expect = 1.7
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 14/115 (12%)
Query: 32 ELELADKGLSSFEELPGLMNMLY-ITRITLSHNKLKGEIIVQVIKGLSNS--KYNYIPIL 88
L L K +++ + + L L ++ G +NS K +
Sbjct: 202 HLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 89 HVTSLPILPFLFLQFPCRM--------NRLSSLPRG-FGAFPVLEVLDLTYNNLN 134
+T + + L N+L S+P G F L+ + L N +
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 104 bits (261), Expect = 3e-25
Identities = 66/318 (20%), Positives = 132/318 (41%), Gaps = 45/318 (14%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIP 86
+L +A + ++S + + L N + + L+ N++ + + L N I
Sbjct: 48 KLVVAGEKVASIQGIEYLTN---LEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKIT 101
Query: 87 IL-HVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
+ + +L L L+L + +S + + L+L N+ S +
Sbjct: 102 DISALQNLTNLRELYLNE----DNISDIS-PLANLTKMYSLNLGANHN--LSDLSPLSNM 154
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
L L + ++ + + I NL +L L L N + +I L +LT L N++T
Sbjct: 155 TGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQIT 212
Query: 206 VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 265
+ P + N+ + L L + N + ++ L NLS+L L I N+++ +
Sbjct: 213 DITP-VANM------TRLN-----SLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN 259
Query: 266 PEIGNLDLASHKSVLKMDFNP--WVTPIAD--QLQ-LVLRENDL-IEIPKELGNLSRLRE 319
+ +L + +L + N ++ + + QL L L N L E + +G L+ L
Sbjct: 260 A-VKDL---TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 320 LHIQANRLTVLPPEIGNL 337
L + N +T + P + +L
Sbjct: 316 LFLSQNHITDIRP-LASL 332
Score = 103 bits (259), Expect = 4e-25
Identities = 62/316 (19%), Positives = 126/316 (39%), Gaps = 43/316 (13%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL-----SNSKYNYIP 86
L ++ L R L + + + ++ + + K I
Sbjct: 4 TLATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 87 ILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 146
+ L L +L L N+++ + L L + N + + L
Sbjct: 61 GI--EYLTNLEYLNLNG----NQITDIS-PLSNLVKLTNLYIGTNKITD---ISALQNLT 110
Query: 147 TLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTV 206
LR LYL +++ + + NL + L L N + L N+T L L + +++
Sbjct: 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD 169
Query: 207 LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 266
+ P I NL + L L L N + +I L +L+ L N++T + P
Sbjct: 170 VTP-IANL------TDLYS-----LSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP 216
Query: 267 EIGNLDLASHKSVLKMDFNP--WVTPIAD--QLQ-LVLRENDLIEIPKELGNLSRLRELH 321
+ N+ + + LK+ N ++P+A+ QL L + N + +I + +L++L+ L+
Sbjct: 217 -VANM---TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN 271
Query: 322 IQANRLTVLPPEIGNL 337
+ +N+++ + + NL
Sbjct: 272 VGSNQISDISV-LNNL 286
Score = 88.4 bits (220), Expect = 1e-19
Identities = 56/306 (18%), Positives = 111/306 (36%), Gaps = 60/306 (19%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYI- 85
L + ++ L L N + + L+ + + + + L+ N+
Sbjct: 92 NLYIGTNKITDISALQNLTN---LRELYLNEDNISD---ISPLANLTKMYSLNLGANHNL 145
Query: 86 -PILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
+ ++++ L +L + +++ + L L L YN + + S
Sbjct: 146 SDLSPLSNMTGLNYLTVTE----SKVKDVT-PIANLTDLYSLSLNYNQIEDIS---PLAS 197
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L +L N + + N+ L L + N + ++ L NL++L L I N++
Sbjct: 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQI 255
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
+ + + +L + LKM L + N + +I L NLS+L L + N+L
Sbjct: 256 SDINA-VKDL------TKLKM-----LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNE 302
Query: 265 PPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHI 322
E IG L L L L +N + +I L +LS++
Sbjct: 303 DMEVIGGL---------------------TNLTTLFLSQNHITDIR-PLASLSKMDSADF 340
Query: 323 QANRLT 328
+
Sbjct: 341 ANQVIK 346
Score = 71.4 bits (176), Expect = 5e-14
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 37/201 (18%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L + +L VL++ + ++ L + +L + ++ +
Sbjct: 2 AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI 59
Query: 208 PP-----EIGNLDLASHK-----SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQ 257
+ L+L ++ + + L + N I L NL+ LREL++
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLN 118
Query: 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSR 316
+ ++ + P + NL ++ L L N + L N++
Sbjct: 119 EDNISDISP-LANL---------------------TKMYSLNLGANHNLSDLSPLSNMTG 156
Query: 317 LRELHIQANRLTVLPPEIGNL 337
L L + +++ + P I NL
Sbjct: 157 LNYLTVTESKVKDVTP-IANL 176
Score = 28.3 bits (64), Expect = 4.8
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL--------SNSKYN 83
LE+ +S + L + + + N++ + V+ L +N++
Sbjct: 247 WLEIGTNQISDINAVKDLTK---LKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLG 300
Query: 84 YIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNE 135
+ + L L LFL N ++ + + ++ D + +
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQ----NHITDIR-PLASLSKMDSADFANQVIKK 347
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 105 bits (264), Expect = 5e-25
Identities = 63/324 (19%), Positives = 101/324 (31%), Gaps = 57/324 (17%)
Query: 32 ELELADKGLSSFEELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHV 90
D + + + I L + I S
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSG----------- 279
Query: 91 TSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLR 149
L L L LS LP G L+ L L+ N ++L +L
Sbjct: 280 -----LQELDLTA----THLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLT 328
Query: 150 ALYLGDN--DFEVLPAEIGNLKNLQILVLRENDLIEIP---KELGNLTRLRELHIQANRL 204
L + N E+ + NL+NL+ L L +D+ +L NL+ L+ L++ N
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 205 TVLPPEI-GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE--LGNLSRLRELHIQANRL 261
L E L+ L L L + NL L+ L++ + L
Sbjct: 389 LSLKTEAFKEC------PQLE-----LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 262 TVLPPEIGNLDLASHKSVLKMDFN--PWVTPIA-------DQLQ-LVLRENDLIEIPKE- 310
+ ++ D L + N P +L+ LVL DL I +
Sbjct: 438 DISSEQL--FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 311 LGNLSRLRELHIQANRLTVLPPEI 334
+L + + + NRLT E
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEA 519
Score = 101 bits (254), Expect = 1e-23
Identities = 58/306 (18%), Positives = 96/306 (31%), Gaps = 82/306 (26%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTS--- 92
S P L T +++ N + E+ ++ L N + + I +
Sbjct: 319 ISASNFPSL------THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 93 --LPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
L L L L + N SL F P LE+LDL + L + F L L+
Sbjct: 373 RNLSHLQSLNLSY----NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 150 ALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE----LGNLTRLRELHIQANRL 204
L L + ++ ++ L LQ L L+ N + + L L RL L + L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
+ + +L + + + NRLT
Sbjct: 489 SSIDQHA---------------------------------FTSLKMMNHVDLSHNRLTSS 515
Query: 265 PPEI-GNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHI 322
E +L + L L N + I L LS+ R +++
Sbjct: 516 SIEALSHLKG---------------------IYLNLASNHISIILPSLLPILSQQRTINL 554
Query: 323 QANRLT 328
+ N L
Sbjct: 555 RQNPLD 560
Score = 101 bits (253), Expect = 2e-23
Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 42/301 (13%)
Query: 60 LSHNKLKGEIIVQVIKGLSNS------KYNYIPILHVTSLPILP---FLFLQFPCRMNRL 110
+ L ++ L NS +N +P + T+ L FL L ++
Sbjct: 19 CENLGLN-----EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR----CQI 69
Query: 111 SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE-IGN 167
+ F + L+ L LT N L + + L+ L+ + + N
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127
Query: 168 LKNLQILVLRENDLIEIPK-ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
K L+ L L N + I + +L+ L Q N + L E + + L ++
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLSLN 185
Query: 227 FNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 286
L ND+ I + + + L+ + ++ + + +
Sbjct: 186 ------LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 287 WVTPIADQLQ---------LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGN 336
+ + L+++ I S L+EL + A L+ LP +
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299
Query: 337 L 337
L
Sbjct: 300 L 300
Score = 97.4 bits (243), Expect = 3e-22
Identities = 63/351 (17%), Positives = 108/351 (30%), Gaps = 63/351 (17%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIP 86
L G+SS + +P L N + + L N + I + K N I
Sbjct: 109 HLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166
Query: 87 ILHV---TSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF 143
L +SL L L N ++ + G V + L+ G
Sbjct: 167 YLSKEDMSSLQQATNLSLNL--NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224
Query: 144 ---------------------------MLETLRALYLGDNDFEVLPAEI-GNLKNLQILV 175
++ ++ L + F + + LQ L
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLR 234
L L E+P L L+ L++L + AN+ L N L L ++
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF------PSLT-----HLSIK 333
Query: 235 ENDLI--EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIA 292
N L NL LREL + + + L SH L + +N ++
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 293 DQLQ-------LVLRENDLIEIPKE--LGNLSRLRELHIQANRLTVLPPEI 334
+ + L L L + NL L+ L++ + L + ++
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Score = 94.3 bits (235), Expect = 3e-21
Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 33/250 (13%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L+ +P E L+ ++N L F L L L L + +
Sbjct: 19 CENLGLNEIPGTL--PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHED 75
Query: 165 -IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
+ L LVL N LI + + L L+ L ++ + L + K++
Sbjct: 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTL 131
Query: 223 LKMDFNPWLVLRENDLIEIPK-ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
+ L N + I + +L+ L Q N + L E + + L
Sbjct: 132 ESLY------LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLS 183
Query: 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 341
++ L ND+ I + + + L+ + ++ +
Sbjct: 184 LN---------------LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 342 HKSVLKMDFN 351
+ +
Sbjct: 229 SLWLGTFEDM 238
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 102 bits (256), Expect = 6e-25
Identities = 52/252 (20%), Positives = 82/252 (32%), Gaps = 40/252 (15%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTS-----LPILPFLFLQFP 104
TR+ L NKL+ + V L+ N + S L +L L F
Sbjct: 30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF- 87
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
N + ++ F LE LD ++NL + S F L L L + V
Sbjct: 88 ---NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 165 I-GNLKNLQILVLRENDLIE--IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
I L +L++L + N E +P L L L + +L L P
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---------- 194
Query: 222 VLKMDFNPW-----LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
FN L + N+ + L+ L+ L N + + S
Sbjct: 195 -----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPS 248
Query: 276 HKSVLKMDFNPW 287
+ L + N +
Sbjct: 249 SLAFLNLTQNDF 260
Score = 100 bits (250), Expect = 4e-24
Identities = 48/243 (19%), Positives = 76/243 (31%), Gaps = 66/243 (27%)
Query: 99 LFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDN 156
L L+ N+L SLP G F L L L+ N L+ + + F +L+ L L N
Sbjct: 33 LELES----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 157 DFEVLPAEIGNLKNLQILVLRENDLIEIPKE--LGNLTRLRELHIQANRLTVLPPEI--- 211
+ + L+ L+ L + ++L ++ + +L L L I V I
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 212 -GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 270
+L VLKM N + D+ L L L + +L L P
Sbjct: 149 LSSL------EVLKMAGNSFQENFLPDI------FTELRNLTFLDLSQCQLEQLSPTA-- 194
Query: 271 LDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 330
+LS L+ L++ N L
Sbjct: 195 ----------------------------------------FNSLSSLQVLNMSHNNFFSL 214
Query: 331 PPE 333
Sbjct: 215 DTF 217
Score = 61.2 bits (149), Expect = 1e-10
Identities = 36/216 (16%), Positives = 57/216 (26%), Gaps = 62/216 (28%)
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLPP 209
+ +P I + L L N L +P LT+L +L + +N L+
Sbjct: 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 210 EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 269
+ + LK +L L N +I + L +L L Q + L +
Sbjct: 70 CSQSDFGTTS---LK-----YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--- 118
Query: 270 NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTV 329
+L L L I V
Sbjct: 119 --------------------------------------FSVFLSLRNLIYLDISHTHTRV 140
Query: 330 LPPEI----GNLDLASHKSVLKMDFNPWVTPIADQL 361
I +L VLKM N + +
Sbjct: 141 AFNGIFNGLSSL------EVLKMAGNSFQENFLPDI 170
Score = 46.9 bits (112), Expect = 4e-06
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 52/164 (31%)
Query: 170 NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 229
+ + L +P + + L +++N+L LP
Sbjct: 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPH-------------------- 45
Query: 230 WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
L++L +L + +N L+ + + LK
Sbjct: 46 -------------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS---LK-------- 81
Query: 290 PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
L L N +I + L +L L Q + L +
Sbjct: 82 ------YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 119
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 102 bits (257), Expect = 2e-24
Identities = 65/268 (24%), Positives = 99/268 (36%), Gaps = 34/268 (12%)
Query: 82 YNYIPILHVTSLPILPFL-FLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP 139
N I L+ P L L+ N +S++ G F L L L N L + +P
Sbjct: 41 KNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIP 96
Query: 140 GNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRE 196
F L L L + +N +L + +L NL+ L + +NDL+ I L L +
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 197 LHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELH 255
L ++ LT +P E L L LR ++ I L RL+ L
Sbjct: 157 LTLEKCNLTSIPTEA-LSHLHGLIV---------LRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 256 IQ-ANRLTVLPPEI-GNLDLASHKSVLKMDFNPWVTPIADQLQ-------LVLRENDLIE 306
I L + P L+L S L + ++ L L N +
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTS----LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 307 IPKE-LGNLSRLRELHIQANRLTVLPPE 333
I L L RL+E+ + +L V+ P
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Score = 94.8 bits (236), Expect = 2e-21
Identities = 67/345 (19%), Positives = 109/345 (31%), Gaps = 92/345 (26%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHV---TS 92
F P L + L+ N + + L N + N + ++ + T
Sbjct: 50 DEFASFPHL------EELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102
Query: 93 LPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRA 150
L L L + N++ L F L+ L++ N+L + F L +L
Sbjct: 103 LSNLTKLDISE----NKIVILLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQ 156
Query: 151 LYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQ-ANRLTVL 207
L L + +P E +L L +L LR ++ I L RL+ L I L +
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 208 PPEI-GNLDLASHKSVLKMDFNP----------------WLVLRENDLIEIPKE-LGNLS 249
P L+L S L + +L L N + I L L
Sbjct: 217 TPNCLYGLNLTS----LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 250 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPK 309
RL+E+ + +L V+ P
Sbjct: 273 RLQEIQLVGGQLAVVEPYA----------------------------------------- 291
Query: 310 ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 354
L+ LR L++ N+LT L + + L +D NP
Sbjct: 292 -FRGLNYLRVLNVSGNQLTTLEESV--FHSVGNLETLILDSNPLA 333
Score = 84.4 bits (209), Expect = 4e-18
Identities = 50/268 (18%), Positives = 96/268 (35%), Gaps = 66/268 (24%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C R ++P G +LDL N + ++L + F
Sbjct: 18 CHRKRFVAVPEGI--PTETRLLDLGKNRI--KTLNQDEF--------------------- 52
Query: 165 IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI--GNLDLASHKS 221
+ +L+ L L EN + + NL LR L +++NRL ++P + G +L
Sbjct: 53 -ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK--- 108
Query: 222 VLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
L + EN ++ + + +L L+ L + N L +
Sbjct: 109 ---------LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA------------ 147
Query: 281 KMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLD 338
F+ + L+ L L + +L IP E L +L L L ++ + + +
Sbjct: 148 ---FSGL-----NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFK 197
Query: 339 LASHKSVLKMDFNPWVTPIADQLQVGIS 366
VL++ P++ + G++
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLN 225
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 103 bits (258), Expect = 3e-24
Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 35/237 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
N L SLP + LE LD N L +LP +L+ L + +N +LP
Sbjct: 87 ITQNALISLPELPAS---LEYLDACDNRL--STLPEL---PASLKHLDVDNNQLTMLPEL 138
Query: 165 IGNLK-----------------NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L+ +L++L +R N L +P+ +L L + N L L
Sbjct: 139 PALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESL---EALDVSTNLLESL 195
Query: 208 PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
P + + REN + IP+ + +L + ++ N L+ E
Sbjct: 196 PAVPVRN-------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQA 324
+ A + + L L + P+ + +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEH 305
Score = 76.5 bits (188), Expect = 2e-15
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 31/184 (16%)
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKEL----GNLTRLRELHIQANRLTVLPPEIGNLDL 216
+ I N +L N + + + N L E
Sbjct: 3 IMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61
Query: 217 ASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
+ L L +L +P L ++ L I N L LP +L
Sbjct: 62 SE------------LQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASL----- 102
Query: 277 KSVLKMDFNPWVT--PIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
L N T + L+ L + N L +P+ L ++ N+LT+LP
Sbjct: 103 -EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPAL---LEYINADNNQLTMLPEL 158
Query: 334 IGNL 337
+L
Sbjct: 159 PTSL 162
Score = 28.8 bits (64), Expect = 3.1
Identities = 26/206 (12%), Positives = 53/206 (25%), Gaps = 57/206 (27%)
Query: 43 FEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPIL--HVTSLPILPF 98
LP L L +++ +N+L + ++ + L + N + L
Sbjct: 152 LTMLPELPTSL--EVLSVRNNQLTF--LPELPESLEALDVSTNLLESLPAVPVRNHHSEE 207
Query: 99 LFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-- 156
+ F CR NR++ +P + + L N L S +T + Y G
Sbjct: 208 TEIFFRCRENRITHIPENILSLDPTCTIILEDNPL--SSRIRESLSQQTAQPDYHGPRIY 265
Query: 157 ---------------------------------------------DFEVLPAEIGNLKNL 171
F + + +
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 172 QILVLRENDLIEIPKELGNLTRLREL 197
+ + ++L LR+
Sbjct: 326 RNTSGFREQVAAWLEKLSASAELRQQ 351
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 103 bits (258), Expect = 3e-24
Identities = 52/306 (16%), Positives = 93/306 (30%), Gaps = 37/306 (12%)
Query: 53 LYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSS 112
L I L++ + I+ + L+N + + + + + F +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 113 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF---EVLPAEIGNLK 169
L+ L T N + L +L L L N
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 170 NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 229
+L+ L L N +I + L +L L Q + L + L L + L
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----LI----- 424
Query: 230 WLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 288
+L + LS L L + N D+ + L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLT------- 473
Query: 289 TPIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 347
L L + L ++ +LS L+ L++ +N+L +P I D + +
Sbjct: 474 -------FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI--FDRLTSLQKIW 524
Query: 348 MDFNPW 353
+ NPW
Sbjct: 525 LHTNPW 530
Score = 99.8 bits (249), Expect = 4e-23
Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 28/277 (10%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
E LA + + + ++ +L ++ G + +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 92 --SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETL 148
L L L N+ + P LE LDL+ N L+ + +L
Sbjct: 321 TLKLKSLKRLTFTS----NKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 149 RALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE--LGNLTRLRELHIQANRLTV 206
+ L L N + + L+ L+ L + ++L ++ + +L L L I V
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 207 LPPEIGN-------LDLAS---HKSVLKMDFNP-----WLVLRENDLIEIPKE-LGNLSR 250
I N L +A ++ L F +L L + L ++ +LS
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 251 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
L+ L++ +N+L +P I D + + + NPW
Sbjct: 496 LQVLNMASNQLKSVPDGI--FDRLTSLQKIWLHTNPW 530
Score = 90.2 bits (224), Expect = 8e-20
Identities = 55/327 (16%), Positives = 102/327 (31%), Gaps = 41/327 (12%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY--------N 83
+L + L+S E P + ++ + + ++HN ++ + + L+N ++
Sbjct: 104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 84 YIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF 143
I + L +P L L +N ++ + G L L L N + +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 144 MLETLRALYLGDNDFEVLPA----EIGNLKNLQILVLRENDL-------IEIPKELGNLT 192
L L L +F + L+ L L + E L +I LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 193 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLR 252
+ + + + + N L L + P L L+
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGW------------QHLELVNCKFGQFPT--LKLKSLK 328
Query: 253 ELHIQANRLTVLPPEIGN-----LDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIE 306
L +N+ E+ LDL S + L+ L L N +I
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 307 IPKELGNLSRLRELHIQANRLTVLPPE 333
+ L +L L Q + L +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Score = 86.3 bits (214), Expect = 1e-18
Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 53/231 (22%)
Query: 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE 164
N L L F +FP L+VLDL+ + Q++ + L L L L N + L
Sbjct: 37 FNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 165 I-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
L +LQ LV E +L + +G+L L+EL++ N +
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------- 140
Query: 223 LKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 282
+P+ NL+ L L + +N++ +
Sbjct: 141 ------------------LPEYFSNLTNLEHLDLSSNKIQSIYCT--------------- 167
Query: 283 DFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
D L L L N + I RL +L ++ N ++ +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Score = 43.9 bits (104), Expect = 7e-05
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 23/107 (21%)
Query: 231 LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
L L N L + + L+ L + + + +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------------YQSLS- 76
Query: 290 PIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI 334
L L+L N + + LS L++L L L
Sbjct: 77 ----HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Score = 33.9 bits (78), Expect = 0.090
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 26/105 (24%)
Query: 233 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWVTPI 291
E + +IP L + L + N L L +
Sbjct: 14 CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP------------------- 52
Query: 292 ADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI 334
+LQ L L ++ I +LS L L + N + L
Sbjct: 53 --ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 99.3 bits (248), Expect = 4e-24
Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 36/254 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPA 163
C +P + LDL++N L + L +FF L+ L L + + +
Sbjct: 14 CMELNFYKIPDNL--PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 164 EI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
+L +L L+L N + + L+ L++L L L H
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLK 124
Query: 222 VLKMDFNPWLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279
LK L + N + ++P+ NL+ L L + +N++ +
Sbjct: 125 TLK-----ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD----------- 168
Query: 280 LKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
L L L N + I RL+EL + N+L +P I D
Sbjct: 169 ----LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI--FDR 222
Query: 340 ASHKSVLKMDFNPW 353
+ + + NPW
Sbjct: 223 LTSLQKIWLHTNPW 236
Score = 68.8 bits (169), Expect = 2e-13
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 91 TSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
+ L L L L+SL G L+ L++ +N + LP F L L
Sbjct: 97 SGLSSLQKLVAV----ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 150 ALYLGDNDFEVLPAEI-GNLKNLQI----LVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L L N + + L + + L L N + I RL+EL + N+L
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPW 230
+P I D + + + NPW
Sbjct: 213 KSVPDGI--FDRLTSLQKIWLHTNPW 236
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 102 bits (255), Expect = 5e-24
Identities = 49/316 (15%), Positives = 110/316 (34%), Gaps = 71/316 (22%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFL 101
+ E+ N ++ + LK + + + + N + L L
Sbjct: 1 AIHEIKQNGNRY--KIEKVTDSSLK-QALASLRQSAWN----------------VKELDL 41
Query: 102 QFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 160
N LS + F LE+L+L+ N L E + L TLR L L +N +
Sbjct: 42 SG----NPLSQISAADLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQ- 93
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP-EIGNLDLASH 219
E+ +++ L N++ + + +++ N++T+L + G
Sbjct: 94 ---ELLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCR----- 143
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKE--LGNLSRLRELHIQANRLTVLPPEIGNLDLASHK 277
S ++ +L L+ N++ + + L L++Q N + + ++ L +
Sbjct: 144 -SRVQ-----YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT-- 195
Query: 278 SVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L L N L + E + + + + ++ N+L ++ +
Sbjct: 196 -------------------LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236
Query: 338 DLASHKSVLKMDFNPW 353
+ + N +
Sbjct: 237 ---QNLEHFDLRGNGF 249
Score = 93.8 bits (233), Expect = 4e-21
Identities = 43/311 (13%), Positives = 95/311 (30%), Gaps = 47/311 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL-----SNSKYNYIP 86
L+L + + P + + ++N + + +G +N+K +
Sbjct: 84 TLDLNNNYVQELLVGPSI------ETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLR 136
Query: 87 ILHVTSLPILPFLFLQFPCRMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
L + +L L+ N + ++ + LE L+L YN + + G
Sbjct: 137 DLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVV- 189
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L+ L L N + E + + + LR N L+ I K L L ++ N
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTV 263
+ + + ++ + + H A
Sbjct: 250 HCGTLRDFFSKN-----------QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 264 LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQ 323
LP + +A + + L + ++ + E N +R RE+
Sbjct: 299 LPAPFADRLIALKRKEHAL--------------LSGQGSETERLECERENQARQREIDAL 344
Query: 324 ANRLTVLPPEI 334
+ + ++
Sbjct: 345 KEQYRTVIDQV 355
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 99.3 bits (248), Expect = 1e-23
Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 39/265 (14%)
Query: 106 RMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ N +S L + F L L L N +++ F L L+ LY+ N +P
Sbjct: 62 QNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVEIPPN 120
Query: 165 IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL 223
+ +L L + +N + ++PK L + + + N L E G D L
Sbjct: 121 L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG------L 172
Query: 224 KMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI----GNLDLASHKSV 279
K++ +L + E L IPK+L L ELH+ N++ + E L
Sbjct: 173 KLN---YLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKL------YR 221
Query: 280 LKMDFNPWVTPIAD-------QLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
L + N + I + L+ L L N L +P L +L L+ +++ N +T +
Sbjct: 222 LGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 332 PE----IGNLDLASHKSVLKMDFNP 352
+G ++ + + + NP
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNP 305
Score = 93.5 bits (233), Expect = 1e-21
Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 52/299 (17%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTSLPI 95
F+ L L + L +NK+ +I + L + N++ +
Sbjct: 72 DDFKGLQHL------YALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS 124
Query: 96 LPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 154
L L + NR+ +P+G F + +++ N L F L L +
Sbjct: 125 LVELRIHD----NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180
Query: 155 DNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI-G 212
+ +P + L L L N + I E L ++L L + N++ ++
Sbjct: 181 EAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 213 NLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE----I 268
L L+ L L N L +P L +L L+ +++ N +T + +
Sbjct: 239 FL------PTLR-----ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 269 GNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKEL-GNLSRLRELHIQANR 326
G ++ + + + NP E+ ++ + +
Sbjct: 288 GFGVKRAYYNGISLFNNP---------------VPYWEVQPATFRCVTDRLAIQFGNYK 331
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 97.3 bits (243), Expect = 2e-22
Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 47/317 (14%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIP 86
L+ G+ S + + L N +T+I S+N+L + +K L+ N I
Sbjct: 50 TLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIA 103
Query: 87 -ILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
I + +L L L L N+++ + L L+L+ N +++ L
Sbjct: 104 DITPLANLTNLTGLTLFN----NQITDID-PLKNLTNLNRLELSSNTISD---ISALSGL 155
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
+L+ L G+ ++ P + NL L+ L + N + +I L LT L L N+++
Sbjct: 156 TSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQIS 212
Query: 206 VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 265
+ P +G L + L L L N L +I L +L+ L +L + N+++ L
Sbjct: 213 DITP-LGIL------TNLDE-----LSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 259
Query: 266 PEIGNLDLASHKSVLKMDFNP--WVTPIAD--QLQ-LVLRENDLIEIPKELGNLSRLREL 320
P + L + + LK+ N ++P+A L L L EN L +I + NL L L
Sbjct: 260 P-LSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYL 314
Query: 321 HIQANRLTVLPPEIGNL 337
+ N ++ + P + +L
Sbjct: 315 TLYFNNISDISP-VSSL 330
Score = 88.5 bits (220), Expect = 2e-19
Identities = 62/324 (19%), Positives = 117/324 (36%), Gaps = 56/324 (17%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPIL-HVTSLPILPF 98
++ + + L + + + ++ + I + V L L
Sbjct: 13 PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72
Query: 99 LFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 158
+ N+L+ + L + + N + + + L L L L +N
Sbjct: 73 INF----SNNQLTDIT-PLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQI 124
Query: 159 EVLPAEIGNLKNLQILVLRENDLIEIP--------------------KELGNLTRLRELH 198
+ + NL NL L L N + +I K L NLT L L
Sbjct: 125 TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183
Query: 199 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA 258
I +N+++ + + L + L+ L+ N + +I LG L+ L EL +
Sbjct: 184 ISSNKVSDISV-LAKL------TNLE-----SLIATNNQISDIT-PLGILTNLDELSLNG 230
Query: 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPW--VTPIADQLQLV---LRENDLIEIPKELGN 313
N+L + + +L ++ + L + N + P++ +L L N + I L
Sbjct: 231 NQLKDIGT-LASL---TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAG 285
Query: 314 LSRLRELHIQANRLTVLPPEIGNL 337
L+ L L + N+L + P I NL
Sbjct: 286 LTALTNLELNENQLEDISP-ISNL 308
Score = 88.1 bits (219), Expect = 2e-19
Identities = 58/328 (17%), Positives = 106/328 (32%), Gaps = 51/328 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L+++ +S L L N + + ++N++ + + L+N + +
Sbjct: 181 RLDISSNKVSDISVLAKLTN---LESLIATNNQISD---ITPLGILTNLDELSLNGNQLK 234
Query: 92 SLPILPFL----FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLET 147
+ L L L N++S+L L L L N ++ S L
Sbjct: 235 DIGTLASLTNLTDLD--LANNQISNLA-PLSGLTKLTELKLGANQISNIS---PLAGLTA 288
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L L L +N E + I NLKNL L L N++ +I + +LT+L+ L N+++ +
Sbjct: 289 LTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDV 346
Query: 208 PPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
++ WL N + ++ L NL+R+ +L + T P
Sbjct: 347 SSLANLTNIN------------WLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVN 393
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRL 327
V + P + + E I N
Sbjct: 394 YKAN--------------------VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433
Query: 328 TVLPPEIGNLDLASHKSVLKMDFNPWVT 355
+ F+ VT
Sbjct: 434 SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
Score = 61.5 bits (150), Expect = 1e-10
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 40/189 (21%)
Query: 150 ALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP 209
A D + L VL + ++ + +L ++ L + +
Sbjct: 6 ATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG 63
Query: 210 EIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 269
+ L + L + N L +I L NL++L ++ + N++ + P +
Sbjct: 64 -VEYL------NNLTQ-----INFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LA 109
Query: 270 NLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
NL L L L N + +I L NL+ L L + +N ++
Sbjct: 110 NL---------------------TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTIS 147
Query: 329 VLPPEIGNL 337
+ + L
Sbjct: 148 DISA-LSGL 155
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 94.0 bits (234), Expect = 4e-22
Identities = 59/251 (23%), Positives = 79/251 (31%), Gaps = 62/251 (24%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L++LP +L L+ N L S L L L + L +
Sbjct: 17 CDKRNLTALPPD--LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
G L L L L N L +P L L L + NRLT LP
Sbjct: 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------- 119
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L L+EL+++ N L LPP +
Sbjct: 120 --LR------------------GLGELQELYLKGNELKTLPPGL---------------L 144
Query: 285 NPWVTPIADQLQ-LVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASH 342
P +L+ L L N+L E+P L L L L +Q N L +P G
Sbjct: 145 TPTP-----KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSHLL 197
Query: 343 KSVLKMDFNPW 353
+ NPW
Sbjct: 198 PF-AFLHGNPW 207
Score = 50.1 bits (120), Expect = 4e-07
Identities = 33/145 (22%), Positives = 46/145 (31%), Gaps = 37/145 (25%)
Query: 190 NLTRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGN 247
+ E++ LT LPP++ + L L EN L L
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLPKDTT--------------ILHLSENLLYTFSLATLMP 53
Query: 248 LSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEI 307
+RL +L++ LT L + L L L N L +
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLG---------------------TLDLSHNQLQSL 92
Query: 308 PKELGNLSRLRELHIQANRLTVLPP 332
P L L L + NRLT LP
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPL 117
Score = 37.0 bits (86), Expect = 0.006
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 247 NLSRLRELHIQANRLTVLPPEI----GNLDLASHK--SVLKMDFNPWVTPIADQLQLVLR 300
++ E++ LT LPP++ L L+ + + P QL L
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL----MPYTRLTQLNLD 63
Query: 301 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+L ++ G L L L + N+L LP L
Sbjct: 64 RAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTL 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 94.7 bits (236), Expect = 5e-22
Identities = 47/300 (15%), Positives = 98/300 (32%), Gaps = 53/300 (17%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHVTSLPI 95
F+ L L + L +NK+ +I L + N + L
Sbjct: 70 GDFKNLKNL------HTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 122
Query: 96 LPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYL 153
L L + N ++ + + F + V++L N L + F ++ L + +
Sbjct: 123 LQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 154 GDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI- 211
D + +P G +L L L N + ++ L L L +L + N ++ +
Sbjct: 179 ADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 212 GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE---- 267
N L+ L L N L+++P L + ++ +++ N ++ +
Sbjct: 237 ANT------PHLR-----ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 268 IGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKEL-GNLSRLRELHIQANR 326
G + S + + NP EI + + + +
Sbjct: 286 PGYNTKKASYSGVSLFSNPV---------------QYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 92.0 bits (229), Expect = 4e-21
Identities = 57/287 (19%), Positives = 101/287 (35%), Gaps = 47/287 (16%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHV---TSLPILPFLFLQFPCR 106
+ L +NK+ EI K L N N I + L L L+L
Sbjct: 54 TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK--- 109
Query: 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 165
N+L LP L+ L + N + + F L + + LG N + E
Sbjct: 110 -NQLKELPEK--MPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 166 G---NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
G +K L + + + ++ IP+ L L ELH+ N++T + +
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDA-----ASLKGLNN 217
Query: 223 LKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
L L L N + + L N LRELH+ N+L +P + + + V+
Sbjct: 218 LA-----KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH---KYIQVVY 269
Query: 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
+ N + + ++ P + + + +N +
Sbjct: 270 LHNN--------NISAI--GSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 93.8 bits (233), Expect = 1e-21
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 20/190 (10%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +L ++P+ +LDL++NNL+ L L +L L N + +E
Sbjct: 25 CSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 165 I-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEI-GNLDLASHKS 221
+ NL+ L L N L + + +L L L + N + V+ ++ +
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM------A 136
Query: 222 VLKMDFNPWLVLRENDLIEIPKE----LGNLSRLRELHIQANRLTVLPPEIGNLDLASHK 277
L+ L L +N + P E L +L L + +N+L LP A K
Sbjct: 137 QLQ-----KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Query: 278 SVLKMDFNPW 287
+ L + NP
Sbjct: 192 NGLYLHNNPL 201
Score = 82.2 bits (203), Expect = 1e-17
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 82 YNYIPILHV----TSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQ 136
+N + L T L L L L N L+ + F P L LDL+ N+L
Sbjct: 48 HNNLSRLRAEWTPTRLTNLHSLLLSH----NHLNFISSEAFVPVPNLRYLDLSSNHL--H 101
Query: 137 SLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE----LGN 190
+L F L+ L L L +N V+ ++ LQ L L +N + P E
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 191 LTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
L +L L + +N+L LP A K+ L + NP
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 94.4 bits (235), Expect = 2e-21
Identities = 47/260 (18%), Positives = 86/260 (33%), Gaps = 52/260 (20%)
Query: 77 LSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE 135
+ Y + L + + ++ +++ +P LE LDL+ N + E
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVEN----SKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 136 QSL--PGNFFMLETLRALYLGDNDFEVLPAEIG---NLKNLQILVLRENDLIEIPKELGN 190
+ L +L+ L L N + LKNL L + N +P
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408
Query: 191 LTRLRELHIQANRLTVLPPEI-GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLS 249
++R L++ + + V+ I L L + N+L L
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTL--------------EVLDVSNNNLDSFSL---FLP 451
Query: 250 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIP 308
RL+EL+I N+L LP + L + + N L +P
Sbjct: 452 RLQELYISRNKLKTLPDAS----------------------LFPVLLVMKISRNQLKSVP 489
Query: 309 KE-LGNLSRLRELHIQANRL 327
L+ L+++ + N
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509
Score = 94.4 bits (235), Expect = 3e-21
Identities = 53/313 (16%), Positives = 108/313 (34%), Gaps = 54/313 (17%)
Query: 32 ELELADKGLSSFEE--LPGLMNMLYITRITLSHNKLKGEI---IVQVIKGLSNSKYNYIP 86
LEL D L+ F+ LP + ++ + L E ++++++ +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 87 ILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 146
+ L + ++ ++ + L + L L + +LE
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETV--------TIRRLHIPQFYLF-YDLSTVYSLLE 310
Query: 147 TLRALYLGDNDFEVLPAEIG-NLKNLQILVLRENDLIEI----PKELGNLTRLRELHIQA 201
++ + + ++ ++P +LK+L+ L L EN ++E G L+ L +
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRL 261
N L + L + L L + N +P ++R L++ + +
Sbjct: 371 NHLRSMQKTGEILLTLKN---LT-----SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 262 TVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLREL 320
V+ I L+ L + N+L L RL+EL
Sbjct: 423 RVVKTCI-----------------------PQTLEVLDVSNNNLDSFSL---FLPRLQEL 456
Query: 321 HIQANRLTVLPPE 333
+I N+L LP
Sbjct: 457 YISRNKLKTLPDA 469
Score = 90.6 bits (225), Expect = 5e-20
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 34/243 (13%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
R +S+P G ++ LDL++N + G+ L+ L L + + +
Sbjct: 12 GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGD 68
Query: 165 I-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
+L +L+ L L +N L + G L+ L+ L++ N L +L + +
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ-T 127
Query: 223 LKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
L++ EI + L+ L EL I+A L + L S + +
Sbjct: 128 LRIGNV-------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHH 176
Query: 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANRLTVLPPEIGNLDLA 340
L L ++ + + + LS +R L ++ L +D
Sbjct: 177 ---------------LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 341 SHK 343
S
Sbjct: 222 SSP 224
Score = 81.3 bits (201), Expect = 6e-17
Identities = 43/308 (13%), Positives = 103/308 (33%), Gaps = 36/308 (11%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKG--------LSNSKYNYIPILHVTS 92
L + L +++ I LS++ + +
Sbjct: 44 GDLRACANL------QVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96
Query: 93 LPILPFLFLQFPCRMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
L L +L L N +L F L+ L + + +F L +L
Sbjct: 97 LSSLKYLNLMG----NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152
Query: 151 LYLGDNDFEVLPAE-IGNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLP 208
L + ++ + +++++ L L ++ + + + L+ +R L ++ L
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212
Query: 209 PEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 268
+D S +K VL + E+ K L + L E+ L +
Sbjct: 213 FSPLPVDEVSSP--MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN----GL 266
Query: 269 GNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE-LGNLSRLRELHIQANR 326
G+ + + V ++ VT ++ L + + L L +++ + ++ ++
Sbjct: 267 GDFNPSESDVVSELGKVETVT-----IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 327 LTVLPPEI 334
+ ++P
Sbjct: 322 VFLVPCSF 329
Score = 79.4 bits (196), Expect = 2e-16
Identities = 50/333 (15%), Positives = 102/333 (30%), Gaps = 52/333 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L L + N+ + + + + + EI GL++
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS------------ 149
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA 150
L L ++ L + + + L L + L +L ++R
Sbjct: 150 ----LNELEIKA----LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200
Query: 151 LYLGDNDFEVLPAEIGNLK---------NLQILVLRENDLIEIPKELGNLTRLRELHIQA 201
L L D + + + VL + E+ K L + L E+
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI------PKELGNLSRLRELH 255
L +G+ + + V ++ + +R + + L +++ +
Sbjct: 261 CTLN----GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 256 IQANRLTVLPPEIGN-------LDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEI 307
++ +++ ++P LDL+ + V + N LQ LVL +N L +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 308 PKELG---NLSRLRELHIQANRLTVLPPEIGNL 337
K L L L I N +P
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Score = 77.8 bits (192), Expect = 9e-16
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 24/237 (10%)
Query: 107 MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE 164
N+++ + G A L+VL L + + ++ G+ F L +L L L DN L +
Sbjct: 35 FNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92
Query: 165 -IGNLKNLQILVLRENDLIEIPK--ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
G L +L+ L L N + NLT L+ L I I L S
Sbjct: 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS--- 149
Query: 222 VLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
L L ++ L + L ++ + L + + L D+ S L
Sbjct: 150 -LN-----ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYL 201
Query: 281 KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
++ L + + + + N L L I L
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPM-----KKLAFRGSVLTDESFNELLKLLRYILEL 253
Score = 75.5 bits (186), Expect = 5e-15
Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 42/300 (14%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLF 100
S + + + +TL ++ ++ LS+ +Y + ++ P
Sbjct: 166 QSLKSIRDI------HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218
Query: 101 LQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 160
+ M +L+ E+L L L + + L L ++D
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
++ + ++ L + + L L +++ + ++ +++ ++P H
Sbjct: 279 ELGKVETV-TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-----QH 332
Query: 220 KSVLKMDFNPWLVLRENDLIEI----PKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
L+ +L L EN ++E G L+ L + N L +
Sbjct: 333 LKSLE-----FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE------ 381
Query: 276 HKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
L L + N +P ++R L++ + + V+ I
Sbjct: 382 -------ILLTLK-----NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 89.5 bits (222), Expect = 2e-19
Identities = 69/339 (20%), Positives = 112/339 (33%), Gaps = 69/339 (20%)
Query: 50 MNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHVTSLPILPFL-FLQF 103
+ + + LSH + + +V + L + K YN I + + L L L
Sbjct: 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 104 PCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 162
N L L F P + +DL N++ F LE L+ L L DN
Sbjct: 322 --SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT--- 375
Query: 163 AEIGNLKNLQILVLRENDLIEIPKE----------------------LGNLTRLRELHIQ 200
I + ++ + L N L+ +PK L + L+ L +
Sbjct: 376 -TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 201 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQAN 259
NR + + L + N L+ E+ + LS L+ L++ N
Sbjct: 435 QNRFSSCSGD-QTPSENPSLEQLFLGENM---LQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLR 318
L LPP + F+ L+ L L N L + + L
Sbjct: 491 YLNSLPPGV---------------FSHL-----TALRGLSLNSNRLTVLSHND-LPANLE 529
Query: 319 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPI 357
L I N+L P D+ SVL + N ++
Sbjct: 530 ILDISRNQLLAPNP-----DVFVSLSVLDITHNKFICEC 563
Score = 86.4 bits (214), Expect = 2e-18
Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 37/262 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND--FEVLP 162
R L+ +P+ E L L++N + + +F LE L+ L LG +
Sbjct: 11 YRFCNLTQVPQVL---NTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 163 AEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
NL NL+IL L + + + + L L EL + L+ + G +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF---RNLK 123
Query: 222 VLKMDFNPWLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279
L L L +N + + + G L+ L+ + +N++ ++ S
Sbjct: 124 ALT-----RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 280 LKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP------- 332
+ N L R + L L + N TV
Sbjct: 179 FSLAAN----------SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228
Query: 333 ---EIGNLDLASHKSVLKMDFN 351
+ +L LA H F+
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFH 250
Score = 81.8 bits (202), Expect = 5e-17
Identities = 58/345 (16%), Positives = 97/345 (28%), Gaps = 80/345 (23%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKG--------LSNSKYNYIPILHVTS 92
SSF L L + L I + + L +SK ++
Sbjct: 42 SSFPFLEQL------QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95
Query: 93 LPILPFLFLQFPCRMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
L L L L F LS F L LDL+ N + L +F L +L+
Sbjct: 96 LFHLFELRLYF----CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151
Query: 150 ALYLGDNDFEVLPAEIGN---LKNLQILVLRENDLIEIP-------KELGNLTRLRELHI 199
++ N ++ K L L N L L L +
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211
Query: 200 QANRLTVLPP----------EIGNLDLASHKSVLKMDFNP------------------WL 231
N TV + +L LA H F+ L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271
Query: 232 VLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
L + + L L+ L++ N++ + + L++
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-----EAFYGLDNLQV-------- 318
Query: 291 IADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEI 334
L L N L E+ L ++ + +Q N + ++ +
Sbjct: 319 ------LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Score = 81.0 bits (200), Expect = 9e-17
Identities = 55/337 (16%), Positives = 112/337 (33%), Gaps = 54/337 (16%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L+L+ + S P + + I S N++ + ++ L ++ + +
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANS 185
Query: 92 SLPILPFLFLQFP------------CRMNRLSSLPRG-------------FGAFPVLEVL 126
+ + + N + G +
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 127 DLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLI 182
++N+ + N F ++R L L L + + LK+L++L L N +
Sbjct: 246 GFGFHNI--KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303
Query: 183 EIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI 241
+I E L L+ L++ N L L V +D L++N + I
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSN----FYGLPKVAYID------LQKNHIAII 353
Query: 242 PKE-LGNLSRLRELHIQANRLTVLP--PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLV 298
+ L +L+ L ++ N LT + P I ++ L S ++ + +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL-SGNKLVTLPKINL-----TANLIH 407
Query: 299 LRENDLIEIPKE--LGNLSRLRELHIQANRLTVLPPE 333
L EN L + L + L+ L + NR + +
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Score = 80.2 bits (198), Expect = 2e-16
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 22/202 (10%)
Query: 46 LPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPC 105
L + + L N L I + + ++ + +LP +
Sbjct: 358 FKFLEKLQTLD---LRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 106 RMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 163
NRL +L P L++L L N + S +L L+LG+N ++
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 164 E------IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDL 216
L +LQ+L L N L +P +LT LR L + +NRLTVL L
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND----L 524
Query: 217 ASHKSVLKMDFNPWLVLRENDL 238
++ +L + N L +
Sbjct: 525 PANLEILDISRNQLLAPNPDVF 546
Score = 54.4 bits (131), Expect = 3e-08
Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 34/178 (19%)
Query: 172 QILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE-------IGNLDLASHKSVLK 224
+I R +L ++P+ L L + N + + + L+L S + L
Sbjct: 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 225 MDFNP--------WLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
+D L L + + + + L L EL + L+ + G
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 276 HKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
+ L + N + + + G L+ L+ + +N++ ++
Sbjct: 124 ALTRLDLSKNQIRS---------------LYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 86.7 bits (215), Expect = 7e-19
Identities = 46/299 (15%), Positives = 86/299 (28%), Gaps = 62/299 (20%)
Query: 91 TSLPILP----FLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
+P LP ++ L +N ++ L F L+ L + F L
Sbjct: 23 HQVPELPAHVNYVDLS----LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78
Query: 146 ETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDL--IEIPKEL-GNLTRLRELHIQA 201
+L L L N F L L NL++L L + +L + LT L L ++
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 202 NRLTVLPPEIGNLDLASHKSVLKMDFNPW------------------LVLRENDLIEIPK 243
N + + P VL + FN L L L ++ +
Sbjct: 139 NNIKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 244 ELG---------NLSRLRELHIQANRLTVLPPE-----IGNLDLAS------HKSVLKMD 283
+ + L + N + I + S +
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257
Query: 284 FNPWVTPIADQL---------QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPP 332
+ P L ++ + + K + + + L +L + N + +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Score = 72.5 bits (178), Expect = 3e-14
Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 51/243 (20%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110
IT + LS N K ++ ++ I + SL + +
Sbjct: 210 KNTSITTLDLSGNGFKES--------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 111 SSLPRG-FGAFPV--LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI- 165
F ++ DL+ + + +L F L L L N+ +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 166 GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L +L L L +N L I + NL +L L + N + L +
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS------------- 366
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L L+EL + N+L +P G D + + +
Sbjct: 367 --------------------FLGLPNLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHT 404
Query: 285 NPW 287
NPW
Sbjct: 405 NPW 407
Score = 72.5 bits (178), Expect = 4e-14
Identities = 59/338 (17%), Positives = 116/338 (34%), Gaps = 76/338 (22%)
Query: 56 TRITLSHNKLKGEII-VQVIKGLSNSKY-----NYIPILHV----TSLPILPFLFLQFPC 105
+TL+ L G ++ K L++ + N I + ++ L L F
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-- 163
Query: 106 RMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP---------GNFFMLETLRALYLGD 155
N++ S+ F L +++ Q + GN F ++ L L
Sbjct: 164 --NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 156 NDFEVLPAEI----GNLKNLQILVLRENDLIEIPKELGNL-------------TRLRELH 198
N F+ A+ +Q L+L + + N + ++
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 199 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQ 257
+ +++ L + SH + L+ L L +N++ +I L+ L +L++
Sbjct: 282 LSKSKIFALLKSV-----FSHFTDLE-----QLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKEL-GNLS 315
N L + + F D+L+ L L N + + + L
Sbjct: 332 QNFLGSIDSRM---------------FEN-----LDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 316 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
L+EL + N+L +P G D + + + NPW
Sbjct: 372 NLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPW 407
Score = 55.9 bits (135), Expect = 8e-09
Identities = 35/251 (13%), Positives = 66/251 (26%), Gaps = 81/251 (32%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLP 162
C L +P P + +DL+ N++ E + +F L+ L+ L + V+
Sbjct: 17 CINRGLHQVP----ELPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIR 71
Query: 163 AEI-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHK 220
L +L IL L N +++ L L L + L
Sbjct: 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK----- 126
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
L+ L L ++ N + + P
Sbjct: 127 --------------------------PLTSLEMLVLRDNNIKKIQPAS------------ 148
Query: 281 KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLA 340
N+ R L + N++ + E
Sbjct: 149 -----------------------------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 341 SHKSVLKMDFN 351
H ++L++
Sbjct: 180 KHFTLLRLSSI 190
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 84.9 bits (210), Expect = 4e-18
Identities = 54/281 (19%), Positives = 99/281 (35%), Gaps = 31/281 (11%)
Query: 22 LDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNS- 80
L + ++ N L + +SF + L+ + ++S+ KL+G++ + S
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275
Query: 81 KYNYIPILHVTSLPILPF-LFLQFP------CRMNRLSSLPRG-FGAFPVLEVLDLTYNN 132
K I + ++ F ++ + LD + N
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 133 LNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIG---NLKNLQILVLRENDL--IEIPK 186
L N L L L L N + L +K+LQ L + +N + E
Sbjct: 336 L--TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 187 ELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELG 246
+ L L++ +N LT + L L N + IPK++
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIK------------VLDLHSNKIKSIPKQVV 441
Query: 247 NLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
L L+EL++ +N+L +P G D + + + NPW
Sbjct: 442 KLEALQELNVASNQLKSVPD--GIFDRLTSLQKIWLHTNPW 480
Score = 78.0 bits (192), Expect = 7e-16
Identities = 51/335 (15%), Positives = 108/335 (32%), Gaps = 76/335 (22%)
Query: 37 DKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPIL 96
+K L L ++ +TL++ + +++++ + ++ Y I +V L
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263
Query: 97 PFLFLQFPC-----------RMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF- 143
F + + + F + + + T + + +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPS 321
Query: 144 MLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELG---NLTRLRELHI 199
+ L +N E G+L L+ L+L+ N L E+ K + L++L I
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 200 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259
N ++ + L L++ +N
Sbjct: 382 SQNSVSYDEK--------------------------------KGDCSWTKSLLSLNMSSN 409
Query: 260 RLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLR 318
LT + +++ L L N + IPK++ L L+
Sbjct: 410 ILTDTIFRC----------------------LPPRIKVLDLHSNKIKSIPKQVVKLEALQ 447
Query: 319 ELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
EL++ +N+L +P G D + + + NPW
Sbjct: 448 ELNVASNQLKSVPD--GIFDRLTSLQKIWLHTNPW 480
Score = 54.5 bits (131), Expect = 2e-08
Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 35/291 (12%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIPILHV---TSLPILPFLFLQFPCR 106
T + +S N + E+ I LS + N I L + L +L L
Sbjct: 23 TTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH--- 78
Query: 107 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 166
N+L + L+ LDL++N + + F + L+ L L E
Sbjct: 79 -NKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
N+ ++L + ++ L + T +L +
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT----------NKEFHFILDVS 185
Query: 227 FNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 286
L +++ + ++ L L + + N++ + S +++
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET-TWNSFIRILQLV 244
Query: 287 WVTPIADQLQLVLRENDLIEIPKELG------NLSRLRELHIQANRLTVLP 331
W T + + L +L L + ++
Sbjct: 245 WHTTV---WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Score = 40.6 bits (95), Expect = 7e-04
Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 35/184 (19%)
Query: 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRE 235
+N LI +PK+L + L+I N ++ L D+ S L+ L++
Sbjct: 7 RSKNGLIHVPKDLS--QKTTILNISQNYISELWTS----DILSLSK-LR-----ILIISH 54
Query: 236 NDLIEIPKE-LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
N + + L L + N+L + + L + FN +
Sbjct: 55 NRIQYLDISVFKFNQELEYLDLSHNKLVKIS-----CHPTVNLKHLDLSFNAFDA----- 104
Query: 295 LQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 354
+ I KE GN+S+L+ L + L + + VL + +
Sbjct: 105 ----------LPICKEFGNMSQLKFLGLSTTHLEKSSVL--PIAHLNISKVLLVLGETYG 152
Query: 355 TPIA 358
Sbjct: 153 EKED 156
Score = 29.1 bits (65), Expect = 2.5
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEI------IVQVIKGLSNSKYNYI 85
+L+++ +S E+ + + +S N L I ++V+ L ++K I
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL-DLHSNKIKSI 436
Query: 86 PILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLN 134
P V L L L + N+L S+P G F L+ + L N +
Sbjct: 437 PK-QVVKLEALQELNVAS----NQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 83.8 bits (207), Expect = 8e-18
Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 28/276 (10%)
Query: 56 TRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR 115
+S+N L I ++ L S +N I ++ L L LQ N L+
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDAS-HNSINVVRGPVNVELTILKLQH----NNLTDTA- 248
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIL 174
+P L +DL+YN L + + + F+ ++ L LY+ +N L + L++L
Sbjct: 249 WLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
Query: 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR 234
L N L+ + + RL L++ N + L L + N W
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHHTLKNLTLSHNDW---D 358
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
N L + + + + H K P++ +
Sbjct: 359 CNSLRALFRNVARP-----------AVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407
Query: 295 LQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 330
+ L + + + ++ +T
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443
Score = 83.8 bits (207), Expect = 1e-17
Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 37/234 (15%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
R + V + + + L + + ++ LPA
Sbjct: 11 PRQPEYKCIDSNLQYDCVFYDVHID-MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 165 I-GNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
+ + + +++L L + + EI +++L++ N + LPP + + +
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-----QNVPL 124
Query: 223 LKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
L LVL NDL +P+ + N +L L + N L + +
Sbjct: 125 LT-----VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT------------- 166
Query: 282 MDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
F LQ L L N L + L + L ++ N L+ L I
Sbjct: 167 --FQA-----TTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI 211
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 81.7 bits (202), Expect = 3e-17
Identities = 50/314 (15%), Positives = 95/314 (30%), Gaps = 49/314 (15%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110
+T + + N L EI V L+ + + + L C N++
Sbjct: 125 QNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQL-TTLDCSFNKI 182
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 170
+ L +L L+ NN+ + L L L N + + L
Sbjct: 183 TELD--VSQNKLLNRLNCDTNNITKLDLNQ----NIQLTFLDCSSNKLTEID--VTPLTQ 234
Query: 171 LQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP----PEIGNLDLASHKSVLKMD 226
L N L E+ + L++L LH L + ++ + + ++D
Sbjct: 235 LTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292
Query: 227 FNP-----WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
L + + E+ L +L L++ LT L + + + LK
Sbjct: 293 VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHN------TKLK 342
Query: 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG---NLD 338
L + + +G + L + +P E +L
Sbjct: 343 S--------------LSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387
Query: 339 LASHKSVLKMDFNP 352
+A +L NP
Sbjct: 388 IAVSPDLLDQFGNP 401
Score = 81.7 bits (202), Expect = 3e-17
Identities = 60/316 (18%), Positives = 109/316 (34%), Gaps = 43/316 (13%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLS--NSKYNYIPILH 89
L+ + ++ + L +T++ + N + + + L+ N + L
Sbjct: 46 SLDCHNSSITDMTGIEKLTG---LTKLICTSNNIT-TLDLSQNTNLTYLACDSNKLTNLD 101
Query: 90 VTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR 149
VT L L +L C N+L+ L P+L L+ N L E + N L
Sbjct: 102 VTPLTKLTYLN----CDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHN----TQLT 151
Query: 150 ALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP- 208
L N ++ L L N + E+ + L L+ N +T L
Sbjct: 152 ELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDL 208
Query: 209 ---PEIGNLDLASHKSVLKMDFNP-----WLVLRENDLIEIPKELGNLSRLRELHIQANR 260
++ LD S + ++D P + N L E+ + LS+L LH
Sbjct: 209 NQNIQLTFLDC-SSNKLTEIDVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD 265
Query: 261 LTVLP----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLS 315
L + ++ + + ++D QL L + + E+ L
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT-----QLYLLDCQAAGITELD--LSQNP 318
Query: 316 RLRELHIQANRLTVLP 331
+L L++ LT L
Sbjct: 319 KLVYLYLNNTELTELD 334
Score = 79.3 bits (196), Expect = 2e-16
Identities = 47/237 (19%), Positives = 73/237 (30%), Gaps = 44/237 (18%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C + ++ + G L L T NN+ + L L N L
Sbjct: 49 CHNSSITDMT-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD-- 101
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP----PEIGNLDLASHK 220
+ L L L N L ++ + L L+ N LT + ++ LD +K
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159
Query: 221 SVLKMDFNP-----WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
+ K+D P L N + E+ + L L+ N +T L +
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQN---- 211
Query: 276 HKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
L L N L EI + L++L N LT L
Sbjct: 212 --IQLT--------------FLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV 250
Score = 71.3 bits (175), Expect = 9e-14
Identities = 52/294 (17%), Positives = 91/294 (30%), Gaps = 32/294 (10%)
Query: 29 KNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIK----GLSNSKYNY 84
N +L D L+ + +T + S NK+ + Q N
Sbjct: 146 HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT---NN 202
Query: 85 IPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM 144
I L + L FL N+L+ + L D + N L E +
Sbjct: 203 ITKLDLNQNIQLTFLDCSS----NKLTEID--VTPLTQLTYFDCSVNPLTEL----DVST 252
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L L L+ D + + + L I+ ++ + T+L L QA +
Sbjct: 253 LSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLDCQAAGI 309
Query: 205 TVLP----PEIGNLDLASHK-SVLKMDFNP---WLVLRENDLIEIPKELGNLSRLRELHI 256
T L P++ L L + + + L + N L + + +G + L
Sbjct: 310 TELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFE 368
Query: 257 QANRLTVLPPEIG---NLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEI 307
+ +P E +L +A +L NP D N +
Sbjct: 369 AEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422
Score = 68.9 bits (169), Expect = 6e-13
Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 32/213 (15%)
Query: 124 EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIE 183
+ + ++ L TL +L ++ + I L L L+ N++
Sbjct: 22 SEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78
Query: 184 IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK 243
+ L T L L +N+LT L + L + L +L N L ++
Sbjct: 79 LD--LSQNTNLTYLACDSNKLTNLD--VTPL------TKLT-----YLNCDTNKLTKLD- 122
Query: 244 ELGNLSRLRELHIQANRLTVLP----PEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LV 298
+ L L+ N LT + ++ LD +K + K+D P QL L
Sbjct: 123 -VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP-----QTQLTTLD 176
Query: 299 LRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
N + E+ + L L+ N +T L
Sbjct: 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKLD 207
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 79.9 bits (197), Expect = 8e-17
Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 34/244 (13%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF-EVLP 162
C+ ++++ +P L L + + F L + + ND EV+
Sbjct: 16 CQESKVTEIPSDL--PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 163 AEI-GNLKNLQIL-VLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
A++ NL L + + + N+L+ I E NL L+ L I + LP +
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQK 130
Query: 220 KSVLKMDFNPWLVLRENDLIE-IPKEL--GNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
L +++N I I + G L + N + + +
Sbjct: 131 V---------LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA--FNGTQL 179
Query: 277 KSVLKMDFNPWVT-------PIADQLQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLT 328
+ D N + + L + + +P L NL +LR L
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLK 237
Query: 329 VLPP 332
LP
Sbjct: 238 KLPT 241
Score = 69.5 bits (170), Expect = 2e-13
Identities = 48/233 (20%), Positives = 76/233 (32%), Gaps = 46/233 (19%)
Query: 41 SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLF 100
+F L +I +S N + I V L L +
Sbjct: 48 GAFSGFGDL------EKIEISQNDVLEVIEADVFSNLPK----------------LHEIR 85
Query: 101 LQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 158
++ + N L + F P L+ L ++ + + LP + L + DN
Sbjct: 86 IE---KANNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 159 -EVLPAEI--GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQA-NRLTVLPPEIGNL 214
+ G IL L +N + EI N T+L EL++ N L LP ++
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV--F 198
Query: 215 DLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPP 266
AS L + + +P L NL +LR L LP
Sbjct: 199 HGASG--------PVILDISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPT 241
Score = 48.3 bits (115), Expect = 2e-06
Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 21/170 (12%)
Query: 43 FEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY------NYIPILHVTSLPIL 96
F+ LP L + +S+ +K + I + S L
Sbjct: 100 FQNLPNL------QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152
Query: 97 PFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLG 154
F + N + + F + E+ NNL + LP + F L +
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDIS 210
Query: 155 DNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANR 203
LP+ NLK L+ +L ++P L L L E +
Sbjct: 211 RTRIHSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLTYPS 257
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 73.5 bits (181), Expect = 2e-15
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 39/185 (21%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +L+ +P L L N G F L LR + +N +
Sbjct: 18 CSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 165 I-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHKSV 222
+ ++L N L + ++ L L+ L +++NR+T + +
Sbjct: 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS----------- 124
Query: 223 LKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 282
F LS +R L + N++T + P G D S L +
Sbjct: 125 ----FI------------------GLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNL 160
Query: 283 DFNPW 287
NP+
Sbjct: 161 LANPF 165
Score = 51.6 bits (124), Expect = 6e-08
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 26/151 (17%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
EL L + + E + + +I S+NK+ +I +G S
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG------------ 82
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLR 149
+ + L NRL ++ F L+ L L N + + +F L ++R
Sbjct: 83 ----VNEILLTS----NRLENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVR 132
Query: 150 ALYLGDNDFEVLPAEI-GNLKNLQILVLREN 179
L L DN + L +L L L N
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 51.6 bits (124), Expect = 6e-08
Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 65/191 (34%)
Query: 170 NLQILVLRENDLIEIPKE--LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
L L N+ + L +LR+++ N++T + G +
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFE------------ 78
Query: 228 NPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
S + E+ + +NRL + ++ F
Sbjct: 79 -------------------GASGVNEILLTSNRLENVQHKM---------------F--- 101
Query: 288 VTPIADQL----QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASH 342
L L+LR N + + + LS +R L + N++T + P G D
Sbjct: 102 -----KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHS 154
Query: 343 KSVLKMDFNPW 353
S L + NP+
Sbjct: 155 LSTLNLLANPF 165
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 74.9 bits (184), Expect = 8e-15
Identities = 54/340 (15%), Positives = 111/340 (32%), Gaps = 55/340 (16%)
Query: 22 LDESKEIKNPELELADKGLSSFEE-LPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNS 80
++ ++ ++L D+ L L + +TL H + + V++ +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 81 KYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPG 140
Y+ I ++T + + A L + + S
Sbjct: 277 PVEYLNIYNLTITERIDREEFTY------------SETALKSLMIEHVKNQVFL-FSKEA 323
Query: 141 NFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIP-KELGNLTRLRELH 198
+ + + L +D + + + L +N + + L RL+ L
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 199 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQA 258
+Q N L S L + N + + + L++ +
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE------SILVLNLSS 437
Query: 259 NRLTV-----LPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN 313
N LT LPP++ LDL + N ++ IPK++ +
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHN--------------------------NRIMSIPKDVTH 471
Query: 314 LSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
L L+EL++ +N+L +P G D + + + NPW
Sbjct: 472 LQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLHDNPW 509
Score = 52.6 bits (126), Expect = 1e-07
Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 25/298 (8%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRM----NRL 110
++LS N + E+ + I LS + + + SL FLF Q + NRL
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 170
++ L LDL++N+ + + F L L L L F L +
Sbjct: 113 QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 171 LQI--LVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 228
L L L + E + LH+ + ++ + + L++
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS--VQVNMSVNALGHLQLSNI 228
Query: 229 PWLVLRENDLIEIPKELGNLSRLRELHIQANRLT----------VLPPEIGNL---DLAS 275
L+ EL L + +Q T P + L +L
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288
Query: 276 HKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGN-LSRLRELHIQANRLTVLPP 332
+ + + +F T + + ++ + + L + + + + + +
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Score = 47.6 bits (113), Expect = 5e-06
Identities = 46/338 (13%), Positives = 93/338 (27%), Gaps = 47/338 (13%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLK-----GEIIVQVIKGLSNSKYNYIP 86
L+L+ N+ +T + LS K + + + L + +I
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184
Query: 87 ILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE 146
SL I L N L S+ + L L L+ LN+++ L
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQV-NMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 147 TLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTV 206
L N LQ + +++ + + L+I +T
Sbjct: 244 ELTRGPTLLNV------------TLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTIT- 289
Query: 207 LPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGN-LSRLRELHIQANRLTVLP 265
E + + ++ S + ++ + + L + + + + + +
Sbjct: 290 ---ERIDREEFTY-SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345
Query: 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIP-KELGNLSRLRELHIQ 323
P L +N + + L RL+ L +Q
Sbjct: 346 MV--------------------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 324 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL 361
N L S L + N + D+
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Score = 41.4 bits (97), Expect = 3e-04
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 33/159 (20%)
Query: 176 LRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRE 235
+L +PK+L R + L + N ++ L ++ S L+ L L
Sbjct: 38 YSNRNLTHVPKDL--PPRTKALSLSQNSISELRM--PDISFLSE---LR-----VLRLSH 85
Query: 236 NDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
N + + + L L + NRL + + H L + FN +
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRH---LDLSFNDFDV----- 135
Query: 295 LQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
+ + KE GNL++L L + A + L
Sbjct: 136 ----------LPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 72.7 bits (179), Expect = 9e-15
Identities = 58/260 (22%), Positives = 90/260 (34%), Gaps = 76/260 (29%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +L+++P + LDL N L SLP F
Sbjct: 23 CSSKKLTAIPSNI--PADTKKLDLQSNKL--SSLPSKAFH-------------------- 58
Query: 165 IGNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEI----GNLDLASH 219
L L++L L +N L +P + L L L + N+L LP + NL
Sbjct: 59 --RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA---- 112
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEI----GNLDLA 274
L L N L +P + +L++L L + N L LP + +L
Sbjct: 113 ----------ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK-- 160
Query: 275 SHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPE 333
+L L N L +P+ L+ L+ L + N+L +P
Sbjct: 161 ---------------------ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE- 198
Query: 334 IGNLDLASHKSVLKMDFNPW 353
G D +L++ NPW
Sbjct: 199 -GAFDSLEKLKMLQLQENPW 217
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 72.6 bits (178), Expect = 2e-14
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 37/265 (13%)
Query: 20 KVLDESKEIKNPELELADKGLS--SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL 77
+ D K + L + + ++ + + +TL + ++ G +++
Sbjct: 60 QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE-A 118
Query: 78 SNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSL-----------PRGFGAFPVLEVL 126
+ N + + +V+ +L L L FP L L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178
Query: 127 DLTYNNLNEQSLPGNFF---MLETLRALYLGDNDFEVLPAEI----GNLKNLQILVLREN 179
DL+ N + + TL+ L L + E LQ L L N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238
Query: 180 DLIEIPKELG--NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
L + ++L L++ L +P + + L L L N
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--------AKLS-----VLDLSYNR 285
Query: 238 LIEIPKELGNLSRLRELHIQANRLT 262
L P L ++ L ++ N
Sbjct: 286 LDRNPSPDE-LPQVGNLSLKGNPFL 309
Score = 70.3 bits (172), Expect = 9e-14
Identities = 40/301 (13%), Positives = 86/301 (28%), Gaps = 58/301 (19%)
Query: 40 LSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFL 99
+ + ++ L + R+T+ ++ I+ ++ L S + + +
Sbjct: 55 EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN---------- 104
Query: 100 FLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL---PGNFFMLETLRALYLGDN 156
+ + P P L +L+L + + ++ L+ L +
Sbjct: 105 -----LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 157 DFEVLPAE-IGNLKNLQILVLRENDLIEIPKE-----LGNLTRLRELHIQANRLTVLPPE 210
E + L L L +N + L+ L ++ +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 211 IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELG--NLSRLRELHIQANRLTVLPPEI 268
L A+ + +D L N L + S+L L++ L +P +
Sbjct: 220 CSAL-AAARVQLQGLD------LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272
Query: 269 GNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRL 327
+L L L N L P L ++ L ++ N
Sbjct: 273 PA-----------------------KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPF 308
Query: 328 T 328
Sbjct: 309 L 309
Score = 51.4 bits (123), Expect = 1e-07
Identities = 27/231 (11%), Positives = 53/231 (22%), Gaps = 33/231 (14%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF----EVLPAEIGNLKNLQILVLRE 178
LE L + + + +L+ L + + + LQ L L
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 179 NDL---IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRE 235
++ P L L+++ + L + L + +
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV------LSIAQ 158
Query: 236 NDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
+ E L L + N I L ++
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL--------------- 203
Query: 295 LQLVLRENDLIEIPKE----LGNLSRLRELHIQANRLTVLPPEIGNLDLAS 341
L LR + +L+ L + N L +
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 73.2 bits (179), Expect = 3e-14
Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 45/231 (19%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
+ L K ++ L + I +I +++ +K ++G+
Sbjct: 25 KDNLKKKSVTDAVTQNELNS---IDQIIANNSDIK------SVQGIQY------------ 63
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 151
LP + LFL N+L+ + L L L N + + S + L+ L++L
Sbjct: 64 -LPNVTKLFLNG----NKLTDIK-PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSL 114
Query: 152 YLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI 211
L N + + +L L+ L L N + +I L LT+L L ++ N+++ + P
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLA 172
Query: 212 GNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLT 262
G L + L L +N + ++ + L L L L + +
Sbjct: 173 GLTKLQN------------LYLSKNHISDL-RALAGLKNLDVLELFSQECL 210
Score = 70.5 bits (172), Expect = 2e-13
Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 45/256 (17%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
+ + AF +L ++ + L ++ + ++D + + I
Sbjct: 9 TPIKQIF-PDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQG-IQY 63
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
L N+ L L N L +I K L NL L L + N++ L + +L LK
Sbjct: 64 LPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS-LKDLKK------LKS-- 113
Query: 228 NPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
L L N + +I L +L +L L++ N++T + L+ L
Sbjct: 114 ---LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV------LSRLTK-LD------ 156
Query: 288 VTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 347
L L +N + +I L L++L+ L++ N ++ L G +L VL+
Sbjct: 157 --------TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNL----DVLE 203
Query: 348 MDFNPWVTPIADQLQV 363
+ + +
Sbjct: 204 LFSQECLNKPINHQSN 219
Score = 59.4 bits (143), Expect = 9e-10
Identities = 27/200 (13%), Positives = 69/200 (34%), Gaps = 45/200 (22%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
+ + + L++ + + L + ++ + +
Sbjct: 1 MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK-- 56
Query: 208 PPEIGNLDLASHKSVLKMDFNP--------------WLVLRENDLIEIPKELGNLSRLRE 253
+ + + + L ++ N WL L EN + ++ L +L +L+
Sbjct: 57 --SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113
Query: 254 LHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELG 312
L ++ N ++ + + +L QL+ L L N + +I L
Sbjct: 114 LSLEHNGISDING-LVHL---------------------PQLESLYLGNNKITDIT-VLS 150
Query: 313 NLSRLRELHIQANRLTVLPP 332
L++L L ++ N+++ + P
Sbjct: 151 RLTKLDTLSLEDNQISDIVP 170
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 70.8 bits (174), Expect = 3e-14
Identities = 42/241 (17%), Positives = 77/241 (31%), Gaps = 45/241 (18%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDND-FEVLP 162
+ +P P + L L +L +++P + F L + +Y+ + + L
Sbjct: 18 VTCKDIQRIP---SLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLE 72
Query: 163 AEI-GNLKNLQILVLRENDLI-EIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+ NL + + +R + I + L L L+ L I L + P
Sbjct: 73 SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132
Query: 220 KSVLKMDFNPWLVLRENDLIE-IPKEL--GNLSRLRELHIQANRLTVLPPEIGNLDLASH 276
L + +N + IP G + L + N T + N
Sbjct: 133 F---------ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG----- 178
Query: 277 KSVLKMDFNPWVTPIADQLQLVLRENDLIE-IPKEL--GNLSRLRELHIQANRLTVLPPE 333
K+D + L +N + I K+ G S L + +T LP +
Sbjct: 179 ---TKLD------------AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 334 I 334
Sbjct: 224 G 224
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 24/150 (16%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L + + GL F +L + + + ++ N I V +GL N
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE----------- 157
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF--MLETLR 149
L L N +S+ L+ + L N + + F +
Sbjct: 158 ----TLTLKLYN----NGFTSVQGYAFNGTKLDAVYLNKNK-YLTVIDKDAFGGVYSGPS 208
Query: 150 ALYLGDNDFEVLPAEIGNLKNLQILVLREN 179
L + LP++ L++L+ L+ R
Sbjct: 209 LLDVSQTSVTALPSKG--LEHLKELIARNT 236
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 71.6 bits (176), Expect = 3e-14
Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 41/229 (17%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
++++ G L L+L N + + + L + L L N + + A I
Sbjct: 51 TGVTTIE-GVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSA-IAG 105
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
L++++ L L + ++ L L+ L+ L++ N++T + P + L + L+
Sbjct: 106 LQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGL------TNLQ--- 154
Query: 228 NPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
+L + + ++ L NLS+L L N+++ + P +L
Sbjct: 155 --YLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISPLASLPNL-------------- 197
Query: 288 VTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN 336
+++ L+ N + ++ L N S L + + +T P N
Sbjct: 198 -------IEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNN 238
Score = 49.3 bits (118), Expect = 8e-07
Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 21/188 (11%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY-----NYIP 86
ELEL+ L + + GL + I + L+ ++ V + GLSN + N I
Sbjct: 89 ELELSGNPLKNVSAIAGLQS---IKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQIT 142
Query: 87 -ILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
I + L L +L + ++S L L L N +++ S + L
Sbjct: 143 NISPLAGLTNLQYLSIGN----AQVSDLT-PLANLSKLTTLKADDNKISDISPLAS---L 194
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
L ++L +N + + N NL I+ L + P N + + +
Sbjct: 195 PNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
Query: 206 VLPPEIGN 213
+ P I +
Sbjct: 254 IAPATISD 261
Score = 40.8 bits (96), Expect = 4e-04
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 24/161 (14%)
Query: 182 IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEI 241
I + L ++ + +T + + + L + I
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITT------------LSAFGTGVTTI 56
Query: 242 PKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW--VTPIAD--QLQ- 296
+ L+ L L ++ N++T L P + NL + + L++ NP V+ IA ++
Sbjct: 57 E-GVQYLNNLIGLELKDNQITDLAP-LKNL---TKITELELSGNPLKNVSAIAGLQSIKT 111
Query: 297 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L L + ++ L LS L+ L++ N++T + P + L
Sbjct: 112 LDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGL 150
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 68.5 bits (168), Expect = 1e-13
Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 48/189 (25%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
CR L+ +P + + L N + + +P F
Sbjct: 18 CRGKGLTEIPTNL--PETITEIRLEQNTI--KVIPPGAF--------------------- 52
Query: 165 IGNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEI----GNLDLASH 219
K L+ + L N + E+ + L L L + N++T LP + +L
Sbjct: 53 -SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ---- 107
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 278
L+L N + + + +L L L + N+L + G
Sbjct: 108 ----------LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQ 155
Query: 279 VLKMDFNPW 287
+ + NP+
Sbjct: 156 TMHLAQNPF 164
Score = 42.7 bits (101), Expect = 6e-05
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 231 LVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
+ L +N + IP +LR + + N+++ L P+ F
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA---------------F----- 76
Query: 290 PIADQL----QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEI 334
L LVL N + E+PK L L L+ L + AN++ L +
Sbjct: 77 ---QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
Score = 33.5 bits (77), Expect = 0.072
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 22/85 (25%)
Query: 252 RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKE 310
E+ ++ N + V+PP F+P+ +L+ + L N + E+ +
Sbjct: 35 TEIRLEQNTIKVIPP---------------GAFSPYK-----KLRRIDLSNNQISELAPD 74
Query: 311 L-GNLSRLRELHIQANRLTVLPPEI 334
L L L + N++T LP +
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSL 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 66.6 bits (163), Expect = 6e-13
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 108 NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI 165
N+++ L G F + L+ L L N L +LP G F L L L LG N VLP+ +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 166 -GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L +L+ L + N L E+P+ + LT L L + N+L +P G D S +
Sbjct: 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAY 165
Query: 225 MDFNPW 230
+ NPW
Sbjct: 166 LFGNPW 171
Score = 55.9 bits (135), Expect = 3e-09
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
CR R +S+P G ++L L N + + PG F L L+ LYLG N LP
Sbjct: 26 CRSKRHASVPAGIPT--NAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVG 82
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI----GNLDLASHK 220
+ + +LT+L L + N+LTVLP + +L
Sbjct: 83 VFD----------------------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLK----- 115
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 280
L + N L E+P+ + L+ L L + N+L +P G D S +
Sbjct: 116 ---------ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHA 164
Query: 281 KMDFNPW 287
+ NPW
Sbjct: 165 YLFGNPW 171
Score = 43.1 bits (102), Expect = 6e-05
Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 63/187 (33%)
Query: 172 QILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
QIL L +N + ++ +L L+EL++ +N+L LP + F+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---------------FD-- 85
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
+L++L L + N+LTVLP + F
Sbjct: 86 ----------------SLTQLTVLDLGTNQLTVLPSAV---------------F------ 108
Query: 291 IADQL----QLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVL 346
D+L +L + N L E+P+ + L+ L L + N+L +P G D S +
Sbjct: 109 --DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHA 164
Query: 347 KMDFNPW 353
+ NPW
Sbjct: 165 YLFGNPW 171
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 64.7 bits (158), Expect = 5e-12
Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 26/227 (11%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSN---SKYNYIPILHVTSLPILPFLF 100
+++ + L + + + + + + + + LP + LF
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 74
Query: 101 LQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 160
L N+L+ + L L L N + + S + L+ L++L L N
Sbjct: 75 LNG----NKLTDIK-PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISD 126
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHK 220
+ + +L L+ L L N + +I L LT+L L ++ N+++ + P G L +
Sbjct: 127 ING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN-- 182
Query: 221 SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
L L +N + ++ + L L L L + + P
Sbjct: 183 ----------LYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN 218
Score = 59.3 bits (144), Expect = 4e-10
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
+L ++ + L ++ + ++D + + I L N+ L L N L
Sbjct: 26 TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT 81
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP 242
+I K L NL L L + N++ L + +L LK L L N + +I
Sbjct: 82 DI-KPLANLKNLGWLFLDENKVKDLSS-LKDLKK------LKS-----LSLEHNGISDIN 128
Query: 243 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRE 301
L +L +L L++ N++T + + L +L L L +
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITV-LSRLT---------------------KLDTLSLED 165
Query: 302 NDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
N + +I L L++L+ L++ N ++ L
Sbjct: 166 NQISDIV-PLAGLTKLQNLYLSKNHISDLRA 195
Score = 48.9 bits (117), Expect = 9e-07
Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 44/181 (24%)
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
L++ + + L + ++ + + + + + + L ++
Sbjct: 22 AFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK----SVQGIQYLPNVTKLFLN 76
Query: 227 FNP--------------WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 272
N WL L EN + ++ L +L +L+ L ++ N ++ + + +L
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHL- 133
Query: 273 LASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
QL+ L L N + +I L L++L L ++ N+++ +
Sbjct: 134 --------------------PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 172
Query: 332 P 332
P
Sbjct: 173 P 173
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 63.2 bits (154), Expect = 1e-11
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 77 LSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE 135
L ++ + L L +L L + N+L +L G F L L L N L
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDY----NQLQTLSAGVFDDLTELGTLGLANNQL-- 95
Query: 136 QSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKEL-GNLT 192
SLP G F L L LYLG N + LP+ + L L+ L L N L IP LT
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 193 RLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
L+ L + N+L +P G D + + N +
Sbjct: 156 NLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQF 191
Score = 55.9 bits (135), Expect = 4e-09
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Query: 56 TRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFL----QFPCRMNRLS 111
++ L L + +GL+ + + + +L F L N+L+
Sbjct: 38 EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 112 SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 168
SLP G F L+ L L N L +SLP G F L L+ L L N + +PA L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 169 KNLQILVLRENDLIEIPKE-LGNLTRLRELHIQAN 202
NLQ L L N L +P L +L+ + + N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 53.2 bits (128), Expect = 3e-08
Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 46/168 (27%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 163
C+ L S+P G P E LDL L S F L L L L N + L A
Sbjct: 21 CQGKSLDSVPSGI---PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI----GNLDLASH 219
+ + +LT L L + N+L LP + LD
Sbjct: 77 GVFD----------------------DLTELGTLGLANNQLASLPLGVFDHLTQLD---- 110
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPP 266
L L N L +P + L++L+EL + N+L +P
Sbjct: 111 ----------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Score = 40.4 bits (95), Expect = 4e-04
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 56/164 (34%)
Query: 172 QILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
+ L L+ L + LT+L L++ N+L L + F+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---------------FD-- 80
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
+L+ L L + N+L LP + F+
Sbjct: 81 ----------------DLTELGTLGLANNQLASLPLGV---------------FDHLT-- 107
Query: 291 IADQLQ-LVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPP 332
QL L L N L +P + L++L+EL + N+L +P
Sbjct: 108 ---QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Score = 27.7 bits (62), Expect = 5.1
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 43/105 (40%)
Query: 231 LVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
L L+ L + L++L L++ N+L L + F+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---------------FD---- 80
Query: 290 PIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
+L+ L L + N+L LP +
Sbjct: 81 -----------------------DLTELGTLGLANNQLASLPLGV 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 61.9 bits (151), Expect = 1e-11
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 163
C L +PR P+ L L N L S G F L L L L N +
Sbjct: 15 CTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 164 EI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
++Q L L EN + EI ++ L +L+ L++ N+++ + P G+ + + +
Sbjct: 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLT 129
Query: 222 VLKMDFNPW 230
L + NP+
Sbjct: 130 SLNLASNPF 138
Score = 38.8 bits (91), Expect = 0.001
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 32/130 (24%)
Query: 231 LVLRENDLIEIPKE--LGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV 288
L+L +N+L I + G L L +L ++ N+LT + P F
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA---------------F---- 74
Query: 289 TPIADQL----QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHK 343
+ +L L EN + EI ++ L +L+ L++ N+++ + P G+ + +
Sbjct: 75 ----EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSL 128
Query: 344 SVLKMDFNPW 353
+ L + NP+
Sbjct: 129 TSLNLASNPF 138
Score = 36.5 bits (85), Expect = 0.006
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 25/127 (19%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
EL L D L + ++ ++ L N+L I +G S+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH------------ 79
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLR 149
+ L L N++ + F L+ L+L N + + G+F L +L
Sbjct: 80 ----IQELQLGE----NKIKEISNKMFLGLHQLKTLNLYDNQI--SCVMPGSFEHLNSLT 129
Query: 150 ALYLGDN 156
+L L N
Sbjct: 130 SLNLASN 136
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 292 ADQLQLVLRENDLIEIPKE--LGNLSRLRELHIQANRLTVLPP 332
+L+L +N+L I + G L L +L ++ N+LT + P
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 63.1 bits (154), Expect = 2e-11
Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 43/212 (20%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
+L ++ + + L ++ +++ + L + NL+ L L N +
Sbjct: 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQIS 76
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP 242
++ L +LT+L EL + NRL L I + L+ L L N+L +
Sbjct: 77 DL-SPLKDLTKLEELSVNRNRLKNLNG-IPSACLSR------------LFLDNNELRDT- 121
Query: 243 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRE 301
L +L L L I+ N+L + +G L +L+ L L
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM-LGFLS---------------------KLEVLDLHG 159
Query: 302 NDLIEIPKELGNLSRLRELHIQANRLTVLPPE 333
N++ L L ++ + + + P +
Sbjct: 160 NEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190
Score = 55.8 bits (135), Expect = 4e-09
Identities = 35/224 (15%), Positives = 66/224 (29%), Gaps = 43/224 (19%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQF 103
++ + + L + + L +
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTD------LVSQKE-------------LSGVQNFNGDN 50
Query: 104 PCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 163
+ + SL G F L+ L L++N +++ S L L L + N + L
Sbjct: 51 ----SNIQSLA-GMQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKNL-- 100
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL 223
L L L N+L + L +L L L I+ N+L + L
Sbjct: 101 NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE------ 153
Query: 224 KMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
L L N++ L L ++ + + + P +
Sbjct: 154 ------VLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190
Score = 50.4 bits (121), Expect = 2e-07
Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 37/168 (22%)
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L N L + + ++ L+ ++ + + + L + + LK
Sbjct: 15 DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG------MQFFTN-LK 66
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L L N + ++ L +L++L EL + NRL L I + L
Sbjct: 67 -----ELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNG-IPSACL----------- 108
Query: 285 NPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
+L L N+L + L +L L L I+ N+L +
Sbjct: 109 ----------SRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 64.4 bits (156), Expect = 2e-11
Identities = 46/217 (21%), Positives = 70/217 (32%), Gaps = 34/217 (15%)
Query: 127 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREND----LI 182
+ + + E L L VL +E+ + K LQ L +I
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389
Query: 183 EIPKELGNLTRLRELHIQANRLTVL-PPEIGNLDLASHKSVLKMDFNPW-------LVLR 234
+ + L L +E + L + P LD K +L+ L L
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
DL + L L + L + NRL LPP + L +
Sbjct: 450 HKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAAL--------------RCLE----- 489
Query: 295 LQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 331
L +N L + + NL RL+EL + NRL
Sbjct: 490 -VLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA 524
Score = 64.0 bits (155), Expect = 3e-11
Identities = 33/135 (24%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 139 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELH 198
+R L+L D VL + L + L L N L +P L L L L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492
Query: 199 IQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP--KELGNLSRLRELHI 256
N L + + NL L+ L+L N L + + L + RL L++
Sbjct: 493 ASDNALENVDG-VANLPR------LQ-----ELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
Query: 257 QANRLTVLPPEIGNL 271
Q N L L
Sbjct: 541 QGNSLCQEEGIQERL 555
Score = 59.4 bits (143), Expect = 8e-10
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 13/169 (7%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNS---KYNYIP-I 87
L + L F L + M L L ++++ + + +
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456
Query: 88 LHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLET 147
H+ L ++ L L NRL +LP A LEVL + N L +++ G L
Sbjct: 457 CHLEQLLLVTHLDLSH----NRLRALPPALAALRCLEVLQASDNAL--ENVDG-VANLPR 509
Query: 148 LRALYLGDNDFEVLPA--EIGNLKNLQILVLRENDLIEIPKELGNLTRL 194
L+ L L +N + A + + L +L L+ N L + L +
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 57.8 bits (139), Expect = 3e-09
Identities = 56/334 (16%), Positives = 99/334 (29%), Gaps = 47/334 (14%)
Query: 23 DESKEIKNPELELADKGL-------SSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIK 75
+ + ELEL S++ L+ + + + E + V
Sbjct: 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261
Query: 76 GLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNE 135
+ + + L + + + P NR S + L + L +
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLN------DQLPQ 315
Query: 136 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLR 195
+ + ++ + L + E + + L L + EL + L+
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ 375
Query: 196 ELHIQANR----LTVLPPEIGNLDLASH--------KSVLKMDFNPWLVLRENDLIEIPK 243
EL + + +L + L K+V M LR L+E
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 435
Query: 244 ELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLREND 303
+ +R LH+ LTVL + L L +H L L N
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTH--------------------LDLSHNR 474
Query: 304 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L +P L L L L N L + + NL
Sbjct: 475 LRALPPALAALRCLEVLQASDNALENVDG-VANL 507
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 62.7 bits (153), Expect = 2e-11
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ + S+ G P + L L N L + L L L L N + LP
Sbjct: 48 ANNSDIKSVQ-GIQYLPNVRYLALGGNKL--HDI-SALKELTNLTYLILTGNQLQSLPNG 103
Query: 165 I-GNLKNLQILVLRENDLIEIPKELGN-LTRLRELHIQANRLTVLPPEI----GNLDLAS 218
+ L NL+ LVL EN L +P + + LT L L++ N+L LP + NL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT--- 160
Query: 219 HKSVLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLP 265
L L N L +P+ + L++L++L + N+L +P
Sbjct: 161 -----------ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 60.4 bits (147), Expect = 1e-10
Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 67/233 (28%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ ++ ++ + +++ +S+ G L +R L LG N + A
Sbjct: 26 LKKKSVTDAV-TQNELNSIDQIIANNSDI--KSVQG-IQYLPNVRYLALGGNKLHDISA- 80
Query: 165 IGNLKNLQILVLRENDLIEIP-KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL 223
+ L NL L+L N L +P LT L+EL + N+L LP +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------------ 128
Query: 224 KMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 283
F+ L+ L L++ N+L LP +
Sbjct: 129 ---FDK------------------LTNLTYLNLAHNQLQSLPKGV--------------- 152
Query: 284 FNPWVTPIADQL----QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLP 331
F D+L +L L N L +P+ + L++L++L + N+L +P
Sbjct: 153 F--------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 53.5 bits (129), Expect = 3e-08
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 33 LELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTS 92
+ + + S + + L N+ + L NKL + +K L+N Y + + S
Sbjct: 46 IIANNSDIKSVQGIQYLPNV---RYLALGGNKLHD---ISALKELTNLTYLILTGNQLQS 99
Query: 93 LPILPFLFL----QFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLE 146
LP F L + N+L SLP G F L L+L +N L QSLP G F L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLT 157
Query: 147 TLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIPKE----LGNLTRL 194
L L L N + LP + L L+ L L +N L +P L +L +
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 48.1 bits (115), Expect = 1e-06
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 88/231 (38%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
P A +L ++ L ++ + ++D + +
Sbjct: 5 VSTPIKQIFPDDAFA--ETIKANLKKKSV--TDAVT-QNELNSIDQIIANNSDIKSVQG- 58
Query: 165 IGNLKNLQILVLRENDLIEIPKELG---NLTRLRELHIQANRLTVLPPEIGNLDLASHKS 221
I L N++ L L N L ++ LT L L + N+L LP +
Sbjct: 59 IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGV---------- 104
Query: 222 VLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 281
F+ L+ L+EL + N+L LP +
Sbjct: 105 -----FD------------------KLTNLKELVLVENQLQSLPDGV------------- 128
Query: 282 MDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
F+ L+ L L++ N+L LP
Sbjct: 129 --FDK---------------------------LTNLTYLNLAHNQLQSLPK 150
Score = 33.8 bits (78), Expect = 0.059
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 43/148 (29%)
Query: 192 TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRL 251
+ +++ +T + + ++ +D+ + + L +
Sbjct: 19 AETIKANLKKKSVTDAVTQNELNSI------------DQIIANNSDIKSVQG-IQYLPNV 65
Query: 252 RELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL----QLVLRENDLIEI 307
R L + N+L + +L L+L N L +
Sbjct: 66 RYLALGGNKLHDIS-------------------------ALKELTNLTYLILTGNQLQSL 100
Query: 308 P-KELGNLSRLRELHIQANRLTVLPPEI 334
P L+ L+EL + N+L LP +
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQSLPDGV 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 58.8 bits (143), Expect = 1e-10
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLP 162
C L+S+P G P L+L N L QSLP G F L L L L N + LP
Sbjct: 14 CNSKGLTSVPTGI---PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 163 AEI-GNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHK 220
+ L L IL L EN L +P + LT+L+EL + N+L +P G D +
Sbjct: 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSL 126
Query: 221 SVLKMDFNPW 230
+ + NPW
Sbjct: 127 QKIWLHTNPW 136
Score = 36.9 bits (86), Expect = 0.004
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 172 QILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEI----GNLDLASHKSVLKMD 226
L L N L +P + LT+L +L + N++ LP + L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT----------- 79
Query: 227 FNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
L L EN L +P + L++L+EL + N+L +P G D + + + N
Sbjct: 80 ---ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTN 134
Query: 286 PW 287
PW
Sbjct: 135 PW 136
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 58.4 bits (142), Expect = 3e-10
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 27/165 (16%)
Query: 51 NMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRL 110
M +T ITL++ + + G+ + L +
Sbjct: 42 QMNSLTYITLANINVTD------LTGIEY-------------AHNIKDLTINN----IHA 78
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLK 169
++ LE L + ++ +P N L +L L + + + I L
Sbjct: 79 TNYN-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 170 NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
+ + L N I L L L+ L+IQ + + I +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDF 180
Score = 56.9 bits (138), Expect = 7e-10
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 40/196 (20%)
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
+ LG + + +L + L ++ ++ + +++L I
Sbjct: 22 FKAYLNGLLGQS--STANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTV 263
T P I L S L+ L + D+ + L L+ L L I +
Sbjct: 79 TNYNP-ISGL------SNLE-----RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 264 LPPE-IGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELH 321
I L ++ + L N I L L L+ L+
Sbjct: 127 SILTKINTLP---------------------KVNSIDLSYNGAITDIMPLKTLPELKSLN 165
Query: 322 IQANRLTVLPPEIGNL 337
IQ + + I +
Sbjct: 166 IQFDGVHDYRG-IEDF 180
Score = 53.4 bits (129), Expect = 1e-08
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 61/208 (29%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
L + L N+ + + ++ L + + I L NL+ L + D+
Sbjct: 46 LTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVT 101
Query: 183 -EIPKELGNLTRLRELHIQANRLTVLPPE-IGNLDLASHKSVLKMDFNPWLVLRENDLIE 240
+ L LT L L I + I L + + L N I
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL------PKVN-----SIDLSYNGAIT 150
Query: 241 IPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLR 300
L L L+ L+IQ + +
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDYRG---------------------------------- 176
Query: 301 ENDLIEIPKELGNLSRLRELHIQANRLT 328
+ + +L +L+ + +
Sbjct: 177 ----------IEDFPKLNQLYAFSQTIG 194
Score = 53.0 bits (128), Expect = 2e-08
Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 27/174 (15%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
+ LA+ ++ + N+ +T+++ I GLSN + I VT
Sbjct: 48 YITLANINVTDLTGIEYAHNI---KDLTINNIHATN---YNPISGLSNLERLRIMGKDVT 101
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 151
S I LS L L +LD++++ ++ L L + ++
Sbjct: 102 SDKIPN------------LSGLTS-------LTLLDISHSAHDDSILT-KINTLPKVNSI 141
Query: 152 YLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
L N + L L+ L ++ + + + + + + +L +L+ + +
Sbjct: 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 57.7 bits (140), Expect = 4e-10
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI- 165
N+ + +P+ + L ++DL+ N + +L +F + L L L N +P
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 166 GNLKNLQILVLRENDLIEIPKELG---NLTRLRELHIQAN 202
LK+L++L L ND+ +P+ G +L+ L L I AN
Sbjct: 99 DGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGAN 136
Score = 52.3 bits (126), Expect = 3e-08
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPP 209
LYL N F ++P E+ N K+L ++ L N + + + N+T+L L + NRL +PP
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 210 EIGNLD-LASHKSVLKMDFNPWLVLRENDLIEIPKELG---NLSRLRELHIQAN 259
D L S + L L ND+ +P+ G +LS L L I AN
Sbjct: 96 --RTFDGLKSLR---------LLSLHGNDISVVPE--GAFNDLSALSHLAIGAN 136
Score = 46.1 bits (110), Expect = 3e-06
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 172 QILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP----EIGNLDLASHKSVLKMDF 227
L L N +PKEL N L + + NR++ L + L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL------------ 81
Query: 228 NPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLP 265
L+L N L IP L LR L + N ++V+P
Sbjct: 82 --TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 41.5 bits (98), Expect = 1e-04
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 28/106 (26%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTP 290
L L N +PKEL N L + + NR++ L + F
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS---------------F------ 74
Query: 291 IADQL----QLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLP 331
+ L+L N L IP L LR L + N ++V+P
Sbjct: 75 --SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 35.3 bits (82), Expect = 0.016
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 292 ADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
D +L L N +PKEL N L + + NR++ L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 57.8 bits (139), Expect = 2e-09
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C + L L + + + L LR L + + + +
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 165 I-GNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
L L L N L + + L+EL + N L
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 53.2 bits (127), Expect = 5e-08
Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 40/130 (30%)
Query: 162 PAEIGNLKNLQILVLRENDLIE-IPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+ +NL L + ++ + L L LR L I + L + P+
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-------- 75
Query: 220 KSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI-GNLDLASHKS 278
F+ RL L++ N L L + L L
Sbjct: 76 -------FH------------------FTPRLSRLNLSFNALESLSWKTVQGLSL----Q 106
Query: 279 VLKMDFNPWV 288
L + NP
Sbjct: 107 ELVLSGNPLH 116
Score = 46.3 bits (109), Expect = 8e-06
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 26/120 (21%)
Query: 40 LSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFL 99
L S LPG N +T + + + + + ++ ++GL L L
Sbjct: 21 LDSLHHLPGAEN---LTELYIENQQHLQHLELRDLRGLGE----------------LRNL 61
Query: 100 FLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 158
+ + L + F P L L+L++N L +SL +L+ L L N
Sbjct: 62 TIVK----SGLRFVAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPL 115
Score = 45.9 bits (108), Expect = 1e-05
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 89 HVTSLPILPFLFLQFPCRMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLE 146
H+ L L+++ L L L L + + L + + + F
Sbjct: 26 HLPGAENLTELYIE---NQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPDAFHFTP 80
Query: 147 TLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181
L L L N E L + +LQ LVL N L
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 35.1 bits (80), Expect = 0.034
Identities = 19/142 (13%), Positives = 33/142 (23%), Gaps = 64/142 (45%)
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
+ ++ L L EL+I+
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQ----------------------------------- 41
Query: 295 LQLVLRENDLIEIPKE-LGNLSRLRELHIQANRLTVLPPE-------IGNLDLASHK--- 343
L + L L LR L I + L + P+ + L+L+ +
Sbjct: 42 -------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94
Query: 344 -----------SVLKMDFNPWV 354
L + NP
Sbjct: 95 LSWKTVQGLSLQELVLSGNPLH 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 52.6 bits (127), Expect = 2e-08
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLP 162
C+ RL+S+P G P + L L N + L G F L L+ LY N +P
Sbjct: 19 CQNIRLASVPAGI---PTDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 163 AEI-GNLKNLQILVLRENDLIEIPK----ELGNLTRL 194
+ L L L L +N L IP+ L +LT +
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 31.5 bits (72), Expect = 0.24
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 24/103 (23%)
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEI----GNLD 215
+PA I + Q L L N + ++ + +L L++L+ +N+LT +P + L
Sbjct: 27 VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84
Query: 216 LASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLREL-HIQ 257
L L +N L IP+ G L+ L HI
Sbjct: 85 --------------QLDLNDNHLKSIPR--GAFDNLKSLTHIY 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 51.8 bits (125), Expect = 3e-08
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 105 CRMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLP 162
C L+S+P G P +VL L N + L G F L L L L +N VLP
Sbjct: 16 CSGKSLASVPTGI---PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 163 AEI-GNLKNLQILVLRENDLIEIPK----ELGNLTRL 194
A + L L L L +N L IP+ L +LT +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 31.4 bits (72), Expect = 0.24
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKEL-GNLTRLRELHIQANRLTVLPPEI----GNLD 215
+P I Q+L L +N + ++ + LT+L L + N+LTVLP + L
Sbjct: 24 VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 216 LASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLREL-HIQ 257
L L +N L IP+ G L+ L HI
Sbjct: 82 --------------QLSLNDNQLKSIPR--GAFDNLKSLTHIW 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 1e-07
Identities = 54/405 (13%), Positives = 121/405 (29%), Gaps = 115/405 (28%)
Query: 21 VLDESKEIKNPELELADKGLSSFEELPGLMN--MLYITR---IT--LSHNKLKGEIIVQV 73
VL ++N + ++F ++ +L TR +T LS +
Sbjct: 249 VLLN---VQNAKA------WNAFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 74 IKGLSNSKY-----NYIPILHVTSLP-----ILPFL------FLQ-FPCRMNRLSSLPRG 116
L+ + Y+ LP P ++ + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----KH 349
Query: 117 FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL--KNLQIL 174
+ +++ + N L R ++ + V P ++ L ++
Sbjct: 350 VNCDKLTTIIESSLNVLEP----------AEYRKMF---DRLSVFPPSA-HIPTILLSLI 395
Query: 175 --VLRENDLIEIPKELGNLTRLRE--------LHIQANRLTVLPPEIGNLDLASHKSVLK 224
+ ++D++ + +L + + + + L V L H+S++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVD 451
Query: 225 MDFNPWLVLRENDLIEIPKE------LG-NLSRLRELHIQANRLTVLPPEIGNLDLASHK 277
+N +DLI + +G +L + R+T+ + K
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE----HPERMTLFRMVFLDFRFLEQK 506
Query: 278 SVLKMDFNPWVTP--IADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN--RLTVLPPE 333
++ D W I + LQ L + + +I N + L
Sbjct: 507 --IRHDSTAWNASGSILNTLQ------QL-----------KFYKPYICDNDPKYERLVNA 547
Query: 334 IGNLDLASHKSVLKMDFNPWVTPIADQLQVGISHVLDYIRSETYK 378
I + L + L + D L++ + + I E +K
Sbjct: 548 ILDF-LPKIEENL------ICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 36.8 bits (84), Expect = 0.013
Identities = 56/333 (16%), Positives = 103/333 (30%), Gaps = 95/333 (28%)
Query: 77 LSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVL--EVLDLTYNNLN 134
+Y Y IL V F C+ + +P+ +L E +D + +
Sbjct: 11 TGEHQYQYKDILSV----FEDAFVDNFDCK--DVQDMPK-----SILSKEEIDHIIMSKD 59
Query: 135 EQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLREN-DLIEIPKELGNLTR 193
S G + TL + + + E VLR N + ++
Sbjct: 60 AVS--GTLRLFWTLLSK--QEEMVQKFVEE----------VLRINYKFL--------MSP 97
Query: 194 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMD---FNPWLVLRENDLIEIPKELGNLSR 250
++ Q P + + L D F + V R +++ + L L
Sbjct: 98 IKTEQRQ--------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 251 LRELHIQ----ANRLTVLPPEIGNLDLASHKSVLKMDFNP-WVT--------PIADQLQL 297
+ + I + + T + ++ S+K KMDF W+ + + LQ
Sbjct: 150 AKNVLIDGVLGSGK-TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 298 VLREND---------LIEIPKELGNL-SRLRELHIQ---ANRLTVLPPEIGNLDLASHKS 344
+L + D I + ++ + LR L N L V L +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNVQNAK 257
Query: 345 VLKMDFNP----WVT----PIADQLQVGI-SHV 368
FN +T + D L +H+
Sbjct: 258 AWNA-FNLSCKILLTTRFKQVTDFLSAATTTHI 289
Score = 30.2 bits (67), Expect = 1.5
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 20/121 (16%)
Query: 267 EIGNLDLASHKSVL-------KMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRE 319
E G +K +L +F+ + D + +L + ++ I +S
Sbjct: 10 ETGEHQY-QYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 320 LHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWV-TPIADQLQVGISHVLDYI--RSET 376
L L + + + VL++++ ++ +PI + + YI R
Sbjct: 67 L------FWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 377 Y 377
Y
Sbjct: 120 Y 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 48.5 bits (116), Expect = 7e-07
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 46/188 (24%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C +S+P G A LDL N+L G F L +L LYLG N + LP
Sbjct: 14 CYSQGRTSVPTGIPA--QTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNG 70
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI----GNLDLASHK 220
+ N LT L L++ N+L LP + L
Sbjct: 71 VFN----------------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLK----- 103
Query: 221 SVLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLASHKSV 279
L L N L +P + L++L++L + N+L +P G D +
Sbjct: 104 ---------ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 152
Query: 280 LKMDFNPW 287
+ + NPW
Sbjct: 153 IWLHDNPW 160
Score = 32.7 bits (75), Expect = 0.13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 231 LVLRENDLIEIP-KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
L L N L +P L+ L +L++ N+L LP + FN
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV---------------FNKLT- 76
Query: 290 PIADQLQ-LVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPP 332
L L L N L +P + L++L+EL + N+L LP
Sbjct: 77 ----SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 47.0 bits (112), Expect = 2e-06
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
E ++L + + L+ + L L N+ E + + + ++NL+IL L N +
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK 83
Query: 183 EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP 242
+I L EL I N++ + ++ + VL M N + + EI
Sbjct: 84 KIENLDAVADTLEELWISYNQIA----SLSGIEKLVNLRVLYMSNN-----KITNWGEI- 133
Query: 243 KELGNLSRLRELHIQANRLT 262
+L L +L +L + N L
Sbjct: 134 DKLAALDKLEDLLLAGNPLY 153
Score = 45.1 bits (107), Expect = 1e-05
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ + + + L L+ NN+ + S + +E LR L LG N + +
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIENL 88
Query: 165 IGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
L+ L + N + + + L LR L++ N++T EI L L
Sbjct: 89 DAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLL 146
Query: 225 MDFNP 229
+ NP
Sbjct: 147 LAGNP 151
Score = 38.1 bits (89), Expect = 0.002
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 32/182 (17%)
Query: 18 AKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGL 77
++ + E + EL + + L + + LS N + + I L
Sbjct: 15 EERKSVVATEAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNI------EKISSL 66
Query: 78 SNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQS 137
S + L L L N + + LE L ++YN + S
Sbjct: 67 SG-------------MENLRILSLGR----NLIKKIENLDAVADTLEELWISYNQIASLS 109
Query: 138 LPGNFFMLETLRALYLGDN---DFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRL 194
L LR LY+ +N ++ + ++ L L+ L+L N L KE +
Sbjct: 110 ---GIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Query: 195 RE 196
R
Sbjct: 166 RI 167
Score = 32.7 bits (75), Expect = 0.11
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 60/190 (31%)
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVL 223
+ ++ L + ++ L L + L + N + +I +L
Sbjct: 21 VATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIE----KISSLS-------- 67
Query: 224 KMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 283
+ LR L + N + +I NLD
Sbjct: 68 -----------------------GMENLRILSLGRNLIK----KIENLD----------- 89
Query: 284 FNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASH 342
+AD L+ L + N + + + L LR L++ N++T EI L
Sbjct: 90 ------AVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAALDK 141
Query: 343 KSVLKMDFNP 352
L + NP
Sbjct: 142 LEDLLLAGNP 151
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 45.4 bits (108), Expect = 5e-06
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 16/143 (11%)
Query: 125 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEI 184
++ LT + + + + R L L V+ L + +N++ ++
Sbjct: 1 MVKLTAELIEQAA---QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57
Query: 185 PKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIP-- 242
L RL+ L + NR+ + L L L+L N L+E+
Sbjct: 58 DG-FPLLRRLKTLLVNNNRICRIGE-----GLDQALPDLTE-----LILTNNSLVELGDL 106
Query: 243 KELGNLSRLRELHIQANRLTVLP 265
L +L L L I N +T
Sbjct: 107 DPLASLKSLTYLCILRNPVTNKK 129
Score = 33.9 bits (78), Expect = 0.042
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK---------YNYIPIL-HVTSL 93
E+ N + + L K+ VI+ L + N I L L
Sbjct: 10 EQAAQYTNAVRDRELDLRGYKIP------VIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 94 PILPFLFLQFPCRMNRLSSLPRGFG-AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
L L + NR+ + G A P L L LT N+L E L++L L
Sbjct: 64 RRLKTLLV----NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 153 LGDN 156
+ N
Sbjct: 120 ILRN 123
Score = 30.4 bits (69), Expect = 0.67
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
+LIE + N R REL ++ ++ I NL DQ
Sbjct: 5 TAELIEQAAQYTNAVRDRELDLRGYKIP----VIENLGAT-----------------LDQ 43
Query: 295 LQ-LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
+ +N++ ++ L RL+ L + NR+ + +
Sbjct: 44 FDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGL 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 67/391 (17%), Positives = 124/391 (31%), Gaps = 137/391 (35%)
Query: 1 MDQAPVSCIPVQGKISKAK-----KVLDESKEIKNPELELADKGLSSFEELPGLMNMLYI 55
+ P+SC P+ G I A K+L G + PG +
Sbjct: 231 LLSIPISC-PLIGVIQLAHYVVTAKLL----------------GFT-----PG--ELRSY 266
Query: 56 TRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR 115
+ H++ ++ V ++S ++ V+ + LF + R
Sbjct: 267 LKGATGHSQ---GLVTAVAIAETDSWESF----FVSVRKAITVLFF--------IGV--R 309
Query: 116 GFGAFPV--LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 173
+ A+P L L + N + +P ML ++ L + +Q
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS--PML-SISNL---------------TQEQVQD 351
Query: 174 LVLRENDLIEIPKELGNLTRLRELHIQ-AN--RLTVL--PPEIGNLDLASHKSVLKMDFN 228
V + N +P +++ I N + V+ PP+ L N
Sbjct: 352 YVNKTNS--HLPAG-------KQVEISLVNGAKNLVVSGPPQ----SLYG--------LN 390
Query: 229 PWLVLRENDLIEIPKELGNLSRL----RELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
L LR+ + P L + SR+ R+L L V P H +L
Sbjct: 391 --LTLRK---AKAPSGL-DQSRIPFSERKLKFSNRFLPVASPF--------HSHLLV--- 433
Query: 285 NPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKS 344
P +D + L +N++ K++ ++ V G+ DL
Sbjct: 434 -----PASDLINKDLVKNNVSFNAKDI--------------QIPVYDTFDGS-DLRVLSG 473
Query: 345 VLKMDFNPWVT--PI--ADQLQVGISHVLDY 371
+ + P+ Q +H+LD+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 34.3 bits (78), Expect = 0.073
Identities = 65/355 (18%), Positives = 109/355 (30%), Gaps = 120/355 (33%)
Query: 56 TR-ITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFL-----QFPCRMNR 109
TR +TLSH L+ ++V P T+ F QF
Sbjct: 6 TRPLTLSHGSLEHVLLV--------------P----TAS----FFIASQLQEQF------ 37
Query: 110 LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 169
LP E + + +E + P E L +LG V P+++G
Sbjct: 38 NKILP---------EPTE-GFAADDEPTTP-----AE-LVGKFLGYVSSLVEPSKVGQFD 81
Query: 170 NLQILVLR--ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
+ L L EN +E GN ++H A +L + + L K ++K
Sbjct: 82 QVLNLCLTEFENCYLE-----GN-----DIHALAAKL----LQENDTTLVKTKELIKNYI 127
Query: 228 NPWLVLRENDLIEIPKEL------------------GN----LSRLRELHIQANRLTVLP 265
++ + + L GN LR+L+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY------QTYH 181
Query: 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIE--IPKELGNLSRLRELHIQ 323
+G+L + A+ L ++R E + L L L
Sbjct: 182 VLVGDL----------------IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 324 ANR--LTVLP---PEIGNLDLASHKSVLK-MDFNPWVTPIADQLQVGISHVLDYI 372
++ L +P P IG + LA + K + F P + L+ H +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGATGHSQGLV 278
Score = 28.9 bits (64), Expect = 3.7
Identities = 58/351 (16%), Positives = 96/351 (27%), Gaps = 148/351 (42%)
Query: 18 AKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITR-----ITLSHNKLKGEIIVQ 72
A+ V + AD F++ G ++L I +T+ KG+ I +
Sbjct: 1642 AQDVWNR-----------ADN---HFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 73 VIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSL----PRGFGAFPVLEVLDL 128
NY ++ T + F +S +G +L
Sbjct: 1687 ----------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--------LLSA 1728
Query: 129 TYNNLNEQSLPGNFFM----LETLRALYLGDND--F---------------EVLPAEIGN 167
T Q P M E L++ L D F +V+ E
Sbjct: 1729 TQFT---Q--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE--- 1780
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
L+E + R + +Q V E+G + +
Sbjct: 1781 ------------SLVE-------VVFYRGMTMQV---AVPRDELGRSNYGM------IAI 1812
Query: 228 NPWLV---LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
NP V + L + + +G + L V EI N +
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGK---------RTGWL-V---EIVN-------------Y 1846
Query: 285 NPWVTP-----IA------DQLQLVLREN-----DLIEIPKELGNLSRLRE 319
N A D + VL D+IE+ K L +L +
Sbjct: 1847 N---VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL-SLEEVEG 1893
Score = 28.1 bits (62), Expect = 5.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 15 ISKAKKVLDESKE--IKNPELELADKGLSSFEELPGLMNMLY 54
+ VL+ K I EL+ + S EE+ G L+
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKS----LSLEEVEG---HLF 1896
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 42.0 bits (99), Expect = 2e-04
Identities = 54/317 (17%), Positives = 97/317 (30%), Gaps = 63/317 (19%)
Query: 48 GLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRM 107
L+ + I LS N + E + + +++ K + I + +
Sbjct: 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD--LEIAEFSDIFTGRVKDEIPEA-- 82
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE---TLRALYLGDNDF------ 158
L L + P L + L+ N + L L LYL +N
Sbjct: 83 --LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140
Query: 159 ---EVLP-----AEIGNLKNLQILVLRENDL-----IEIPKELGNLTRLRELHIQANRLT 205
L + N L+ ++ N L E K + L + + N +
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200
Query: 206 VLPPEIGNL--DLASHKSVLKMDFNPWLVLRENDL-----IEIPKELGNLSRLRELHIQA 258
P I +L + ++ LK L L++N + L + LREL +
Sbjct: 201 --PEGIEHLLLEGLAYCQELK-----VLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253
Query: 259 NRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDL-----IEIPKELG 312
L+ G + N LQ L L+ N++ + +
Sbjct: 254 CLLS----ARGAAAVV---DAFSKLENI-------GLQTLRLQYNEIELDAVRTLKTVID 299
Query: 313 -NLSRLRELHIQANRLT 328
+ L L + NR +
Sbjct: 300 EKMPDLLFLELNGNRFS 316
Score = 33.9 bits (78), Expect = 0.074
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 33/197 (16%)
Query: 153 LGDNDFEVLPAEIGNLKNLQILVLRENDL-----IEIPKELGNLTRLRELHIQANRLTVL 207
+ D + + A + +++ +VL N + + + + + L +
Sbjct: 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 75
Query: 208 PPEI--GNLDLAS---HKSVLKMDFNPWLVLRENDL-----IEIPKELGNLSRLRELHIQ 257
EI L L + L +N + L + L L++
Sbjct: 76 KDEIPEALRLLLQALLKCPKLH-----TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130
Query: 258 ANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDL-----IEIPKEL 311
N L +A L ++ P L+ ++ N L E K
Sbjct: 131 NNGLG----PQAGAKIARALQELAVNKKAKNAP---PLRSIICGRNRLENGSMKEWAKTF 183
Query: 312 GNLSRLRELHIQANRLT 328
+ L + + N +
Sbjct: 184 QSHRLLHTVKMVQNGIR 200
Score = 30.5 bits (69), Expect = 0.91
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 14/113 (12%)
Query: 118 GAFPVLEVLDLTYNNLNE-------QSLPGNFFMLETLRALYLGDNDF----EVLPAEIG 166
L+ L L YN + + + L L L N F +V+
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEK---MPDLLFLELNGNRFSEEDDVVDEIRE 327
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
L E D +E + E Q+ E + +LA
Sbjct: 328 VFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 39.0 bits (91), Expect = 6e-04
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
+ L L N+ + G L L L + + + + L L+ L L EN +
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF 84
Query: 183 EIPKELG-NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 229
L L L L++ N+L + + L L +
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNCE 131
Score = 32.4 bits (74), Expect = 0.13
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKY---NYIPILHVTSLPILPFLFLQFPCRMNRLS 111
+ + L + K I + N ++ + ++ V++LP LP L NR+
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE-NRIF 84
Query: 112 SLPRGFG-AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIG 166
P L L+L+ N L + S LE L++L L + + L
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144
Query: 167 NLKNLQILVLRENDLIEIPK 186
L L L + + E P
Sbjct: 145 LLPQLTYLDGYDREDQEAPD 164
Score = 28.2 bits (63), Expect = 3.0
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
++ L +L +++ +I L L + L + NL K+
Sbjct: 25 AVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SVSNLP--------KLP 71
Query: 227 FNPWLVLRENDLIEIPKELG-NLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
L L EN + L L L L++ N+L + + L L +
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLECLKSLDLFNC 130
Query: 286 P 286
Sbjct: 131 E 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 38.5 bits (90), Expect = 7e-04
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 106 RMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE 164
+ L F LE L L + N L L+ L L DN L
Sbjct: 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSGGLEVL 83
Query: 165 IGNLKNLQILVLRENDL--IEIPKELGNLTRLRELHIQANRLTVLP 208
NL L L N + + + L L L+ L + +T L
Sbjct: 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
Score = 32.3 bits (74), Expect = 0.12
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKY---NYIPILHVTSLPILPFLFLQFPCRMNRLS 111
+ + L +++ + + ++ + + + +LP L L NR+S
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE-LSDNRVS 77
Query: 112 SLPRGFG-AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 156
P L L+L+ N + + S LE L++L L +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 27.7 bits (62), Expect = 3.3
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP-----PEIGNLDLA---- 217
++K L +L ++ ++ L L LT + ++ L+L+
Sbjct: 18 DVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76
Query: 218 SHKSVLKMDFNP---WLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLP 265
S + + P L L N + + + L L L+ L + +T L
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.8 bits (88), Expect = 0.004
Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 34/231 (14%)
Query: 122 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI------GNLKNLQILV 175
L+ ++L L+ L + R L L N + + + L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161
Query: 176 LRENDL-----IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLAS---HKSVLKMDF 227
L N L + + L T + L + L + G LA+ L+
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG----DEGLELLAAQLDRNRQLQ--- 214
Query: 228 NPWLVLRENDL-----IEIPKELGNLSRLRELHIQANRLT-----VLPPEIGNLDLASHK 277
L + N + + + L LH+ N L+ VL G + +
Sbjct: 215 --ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272
Query: 278 SVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
V + + L V R + + + +L L ++ +R
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE-LLLRDLEDSRGA 322
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.4 bits (79), Expect = 0.015
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 132 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLREN 179
L SLP F L L N+ LP + L L+ L N
Sbjct: 19 GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.8 bits (67), Expect = 0.59
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 192 TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 230
EL + N LT LPP G LD + NPW
Sbjct: 31 VDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPW 67
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 249 SRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
EL + N LT LPP G LD + NPW
Sbjct: 31 VDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPW 67
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 315 SRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
EL + N LT LPP G LD + NPW
Sbjct: 31 VDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPW 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 35.3 bits (82), Expect = 0.032
Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 56/249 (22%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-----EVLPAEIGNLKNLQILVLR 177
++ LD+ L++ +L+ + + L D + + + + L L LR
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 178 ENDL-----IEIPKELGNL-TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWL 231
N+L + + L ++++L +Q LT G L+ S L+ P L
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT----GAGCGVLS---STLRT--LPTL 115
Query: 232 V---LRENDLIEI------PKELGNLSRLRELHIQANRLTVLPPEIGNLDLAS------H 276
L +N L + L RL +L ++ L+ LAS
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AASCEPLASVLRAKPD 171
Query: 277 KSVLKMDFNPW----VTPIADQLQ--------LVLRENDL-----IEIPKELGNLSRLRE 319
L + N V + L+ L L + ++ + + + LRE
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 320 LHIQANRLT 328
L + +N+L
Sbjct: 232 LALGSNKLG 240
Score = 32.2 bits (74), Expect = 0.28
Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 58/237 (24%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLS--- 111
I + + +L +++ L + + L L+
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQV----------------VRLDD----CGLTEAR 44
Query: 112 --SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF-----EV 160
+ P L L+L N L + + L+ ++ L L + V
Sbjct: 45 CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104
Query: 161 LPAEIGNLKNLQILVLRENDLIEI------PKELGNLTRLRELHIQANRLTVLPPEIGNL 214
L + + L LQ L L +N L + L RL +L ++ L+
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AASCE 160
Query: 215 DLAS---HKSVLKMDFNPWLVLRENDLIE-----IPKELG-NLSRLRELHIQANRLT 262
LAS K K L + ND+ E + + L + +L L +++ +T
Sbjct: 161 PLASVLRAKPDFK-----ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212
Score = 31.9 bits (73), Expect = 0.38
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 37/168 (22%)
Query: 121 PVLEVLDLTYNNLNE-------QSLPGNFFMLETLRALY--LGDNDFEVLPAEIGNLKNL 171
L+ L L N L + ++L LE+L + + + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 172 QILVLRENDL-----IEIPKELG-NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKM 225
L + N L E+ + LG + LR L + ++ + LA + L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS----DSSCSSLA---ATLLA 396
Query: 226 DFNP---WLVLREND--------LIEIPKELGNLSRLRELHIQANRLT 262
N L L N L+E ++ L +L + +
Sbjct: 397 --NHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWS 440
Score = 31.9 bits (73), Expect = 0.39
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 33/176 (18%)
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF-----EVL 161
L P L+ L L+ N L + L L L L L E L
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
Query: 162 PAEIGNLKNLQILVLRENDLIE-----IPKELGNLT-RLRELHIQANRLTVLPPEIGNLD 215
+ + + + L + ND+ E + + L + +L L +++ +T D
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCRD 218
Query: 216 LAS---HKSVLKMDFNPWLVLRENDLIE------IPKELGNLSRLRELHIQANRLT 262
L K+ L+ L L N L + P L SRLR L I +T
Sbjct: 219 LCGIVASKASLR-----ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 34.9 bits (79), Expect = 0.038
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 20/96 (20%)
Query: 86 PILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
P+ P L +L + N + + P LE +D++ L
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL------------ 291
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181
D +L + +K+L+ + ++ N L
Sbjct: 292 --------TDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 34.5 bits (78), Expect = 0.048
Identities = 34/254 (13%), Positives = 85/254 (33%), Gaps = 24/254 (9%)
Query: 23 DESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKY 82
+ + A++G++ +++ + + +IT+ +GE + G+ +K
Sbjct: 77 KVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKE 136
Query: 83 NYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNF 142
+ + F + L A P+L L + N +L
Sbjct: 137 KF-AHFEGLFWGDIDFEEQEISWIE--QVDLSPVLDAMPLLNNLKIKGTN----NLSIGK 189
Query: 143 FMLETLRALYLGDNDF------EVLPAEIGNLKNLQILVLRENDLIEIPKEL-------G 189
L++L + ++L +++ NL+ L + V E+ + +
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249
Query: 190 NLTRLRELHIQANRLT-VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNL 248
L+ L I V+ D+ + + VL + + + +
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG---VLTDEGARLLLDHVDKI 306
Query: 249 SRLRELHIQANRLT 262
L+ ++++ N L+
Sbjct: 307 KHLKFINMKYNYLS 320
Score = 29.9 bits (66), Expect = 1.2
Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 21/296 (7%)
Query: 38 KGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILP 97
K SS E L + + + E+ + +K + +
Sbjct: 41 KNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVA-KEMKVEAKKYALSYDEAEEGVNLMDK 99
Query: 98 FLFLQFPCRMNRLSSLPRGFGAFPVLEVLD-LTYNNLNEQSLPGNFFMLETLRALYLGDN 156
L + + +++ G+ ++ D + N G F+ +
Sbjct: 100 ILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI 159
Query: 157 DFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT-VLPPEIGNLD 215
+ L + + L L ++ + + I K+ L+ L I + L + +I D
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGSD 217
Query: 216 LASHKSVLKMDFNPWLVLRENDLIEIPKEL--GNLSRLRELHIQANRLT-VLPPEIGNLD 272
L + L + + D+ L+ L I V+ D
Sbjct: 218 L-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 273 LASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLT 328
+ + + VL + + + + L+ ++++ N L+
Sbjct: 277 ILPQLETMDISAG------------VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 34.7 bits (80), Expect = 0.048
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 24/160 (15%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF---------EVLPAEIGNLK 169
+ L+L N+L +S +L + +L L N+ + L +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS---IPA 196
Query: 170 NLQILVLRENDL-----IEIPKEL-GNLTRLRELHIQANRLTVLPPEIGNLDLASHKS-- 221
++ L L N L E+ + L++ N L E L S K
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 222 VLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRL 261
+ +D++ + + + N+ ++ + +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 33.9 bits (78), Expect = 0.065
Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDFEVLPAEI------GNLKNLQ 172
+ L+L+ N L+ +S L T+ L LG NDF + ++
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 173 ILVLRENDL-----IEIPKELGNL-TRLRELHIQANRLTVLPPEIGNLDLAS-----HKS 221
L LR NDL E+ + L + + L+++ N L +LA S
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA----SKNCAELAKFLASIPAS 197
Query: 222 VLKMDFNPWLVLRENDL-----IEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNLDLAS 275
V +D L N L E+ + + L++ N L E L S
Sbjct: 198 VTSLD------LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251
Query: 276 HKS--VLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRL 327
K + +D++ +Q + + N+ ++ + +
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALG---------AAFPNIQKIILVDKNGKEI 296
Score = 28.9 bits (65), Expect = 3.1
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF---------EVLPAEIGNLK 169
+ LDL+ NNL S ++ +L L N ++L A
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA---IPA 80
Query: 170 NLQILVLRENDL-----IEIPKEL-GNLTRLRELHIQANRLT 205
N+ L L N L E+ K L + L + N +
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 31.0 bits (70), Expect = 0.44
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG------DNDFEVLPAE 164
+ LP G ++ +D T + + + L+ + + L D E L
Sbjct: 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109
Query: 165 IGNLKNLQILVLRENDLI--EIPKELGNLTRLRELHI 199
K++ + + + + L + L+ L +
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 29.4 bits (66), Expect = 1.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLE---TLRALYLGDNDF 158
+E L +++ G ++E +LR L + N
Sbjct: 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.1
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 72 QVIKGLSNSKYNYIPILHVTSLPIL 96
Q +K L S Y S P L
Sbjct: 20 QALKKLQASLKLYAD----DSAPAL 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 28.8 bits (64), Expect = 3.2
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL----GDNDFEV 160
+ +P F + LDL Y L + L L GD EV
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336
Query: 161 LPAEIGNLKNLQILVLRENDLIEIPKELG-------------NLTRLRELHIQANRLT 205
L K L+ L + + ++ L + + + +T
Sbjct: 337 L---AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
Score = 28.0 bits (62), Expect = 5.8
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 14/167 (8%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
+ L + L ++ N L L L +P
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSL-NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288
Query: 165 IGNLKNLQILVLRENDLI--EIPKELGNLTRLRELHIQAN-------RLTVLPPEIGNLD 215
++ L L L + + L L + L ++ L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348
Query: 216 LASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLT 262
+ M+ LV + LI + + L + + + +T
Sbjct: 349 IERGADEQGMEDEEGLV-SQRGLIALAQ---GCQELEYMAVYVSDIT 391
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 27.9 bits (62), Expect = 6.7
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL----GDNDFEVLPAEIG 166
+ LP + L L+L+Y + L L+ L++ D EVL
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL---AS 335
Query: 167 NLKNLQILVLRENDLIEIPKELG-----------NLTRLRELHIQANRLT 205
K+L+ L + ++ + + +L + ++T
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385
Score = 27.6 bits (61), Expect = 8.3
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 121 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND--FEVLPAEIGNLKNLQILVLRE 178
L L++ +++L N LET+R+L++ F + L + V+ E
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540
Query: 179 NDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASH 219
+ E + R+ A +P + N+D S
Sbjct: 541 RGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDST 581
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 27.8 bits (61), Expect = 7.0
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 122 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL 181
L ++ L E + YLG +E + +I + +E L
Sbjct: 155 ATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIIL 214
Query: 182 IEIP--KELGNLTRLRELHIQ 200
+ K L L L+ +
Sbjct: 215 RPVDEVKVL--LNDLKGAGFE 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,799,210
Number of extensions: 361901
Number of successful extensions: 4291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 364
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)