RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9862
(378 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 72.0 bits (175), Expect = 1e-14
Identities = 56/275 (20%), Positives = 106/275 (38%), Gaps = 33/275 (12%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPA 163
C L +P+ P +LDL N + E G+F L+ L L L +N ++ P
Sbjct: 17 CSDLGLEKVPKDL--PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPG 73
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGN-------LDL 216
L L+ L L +N L E+P+++ L+EL + N +T + + N ++L
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVEL 131
Query: 217 ASHKSVLKMDFNPWLV---------LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE 267
++ N + + ++ IP+ G L ELH+ N++T +
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAA 189
Query: 268 I----GNLDLASHKSVLKMDFNPWVTPIADQL-QLVLRENDLIEIPKELGNLSRLRELHI 322
NL + L +L L N L+++P L + ++ +++
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249
Query: 323 QANRLTVLPPE----IGNLDLASHKSVLKMDFNPW 353
N ++ + G + S + + NP
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
Score = 57.4 bits (137), Expect = 7e-10
Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 25/255 (9%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQ----FPCRMNRL 110
+ L +NK+ I K L N + ++ + F L N+L
Sbjct: 33 TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 111 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 170
LP + +S+ + + + +K
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151
Query: 171 LQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI-----------GNLDLASH 219
L + + + ++ IP+ G L ELH+ N++T + + + S
Sbjct: 152 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 220 KSVLKMDFNPWL---VLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPE----IGNLD 272
+ P L L N L+++P L + ++ +++ N ++ + G
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 273 LASHKSVLKMDFNPW 287
+ S + + NP
Sbjct: 270 KKASYSGVSLFSNPV 284
Score = 25.8 bits (55), Expect = 8.5
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 108 NRLSSLPRG-------FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYL 153
N +S++ + L N + + P F + A+ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 64.3 bits (155), Expect = 6e-12
Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 42 SFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFL 101
+++ L ++ +T + L++N++ + + L+ K I +++ L L L
Sbjct: 230 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 289
Query: 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 161
L L L +NN+++ S + L L+ L+ +N +
Sbjct: 290 LELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKVSDV 344
Query: 162 PAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQAN 202
+ NL N+ L N + ++ L NLTR+ +L +
Sbjct: 345 S-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383
Score = 61.2 bits (147), Expect = 6e-11
Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 40/211 (18%)
Query: 126 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIP 185
L T N +++ + G L+ L L N + + + +L NL L L N + +
Sbjct: 202 LIATNNQISDITPLGILTNLDEL---SLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 257
Query: 186 KELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW----------LVLRE 235
L LT+L EL + AN+++ + P G L + + + L L
Sbjct: 258 -PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316
Query: 236 NDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQL 295
N++ +I + +L++L+ L N+++ + NL +
Sbjct: 317 NNISDIS-PVSSLTKLQRLFFANNKVSD-VSSLANLT---------------------NI 353
Query: 296 Q-LVLRENDLIEIPKELGNLSRLRELHIQAN 325
L N + ++ L NL+R+ +L +
Sbjct: 354 NWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383
Score = 56.5 bits (135), Expect = 2e-09
Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 58/229 (25%)
Query: 50 MNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNR 109
+ + + ++N++ + ++ L N + + +L L L N+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT-DLDLANNQ 252
Query: 110 LSSLPRGFGAFPVLEVLDLTYNNL-------------------NEQSLPGNFFMLETLRA 150
+S+L L L L N + N+ L+ L
Sbjct: 253 ISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 151 LYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE 210
L L N+ + + +L LQ L N + ++ L NLT + L N+++ L P
Sbjct: 312 LTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP- 368
Query: 211 IGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQAN 259
L NL+R+ +L +
Sbjct: 369 ----------------------------------LANLTRITQLGLNDQ 383
Score = 53.9 bits (128), Expect = 1e-08
Identities = 54/317 (17%), Positives = 110/317 (34%), Gaps = 25/317 (7%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L+ G+ S + + L N +T+I S+N+L +K L+ + +
Sbjct: 48 TLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIA 101
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 151
+ L L + +N ++ +
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN----TISDISALSGLTSLQ 157
Query: 152 YLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEI 211
L + + NL L+ L + N + L LT L L N+++ + P
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLG 216
Query: 212 GN-----LDLASHK-----SVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRL 261
L L ++ ++ + L L N + + L L++L EL + AN++
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQI 275
Query: 262 TVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-LVLRENDLIEIPKELGNLSRLREL 320
+ + P G L + + + L L L N++ +I + +L++L+ L
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 334
Query: 321 HIQANRLTVLPPEIGNL 337
N+++ + NL
Sbjct: 335 FFANNKVSD-VSSLANL 350
Score = 40.4 bits (93), Expect = 3e-04
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
EL+L +S+ L GL + + + ++ + L+ N I V+
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 326
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 151
SL L LF N++S + + L +N +++ + N L + L
Sbjct: 327 SLTKLQRLFFAN----NKVSDVS-SLANLTNINWLSAGHNQISDLTPLAN---LTRITQL 378
Query: 152 YLGDN 156
L D
Sbjct: 379 GLNDQ 383
Score = 38.4 bits (88), Expect = 0.001
Identities = 35/252 (13%), Positives = 76/252 (30%), Gaps = 34/252 (13%)
Query: 120 FPVLEVLDLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177
F + + L + ++ + L+ + L + + + L NL +
Sbjct: 16 FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFS 74
Query: 178 ENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLREND 237
N L +I L NLT+L ++ + N++ + P +L + + +
Sbjct: 75 NNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 238 LIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLA----------------------- 274
L + +S + L + +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 275 ---SHKSVLKMDFNPWVTPIADQLQLVLRENDL----IEIPKELGNLSRLRELHIQANRL 327
++ L N + L E L ++ L +L+ L +L + N++
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253
Query: 328 TVLPPEIGNLDL 339
+ L P G L
Sbjct: 254 SNLAPLSGLTKL 265
Score = 28.4 bits (62), Expect = 1.6
Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 14/264 (5%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
+ S+ G L ++ + N L + + N L + D L
Sbjct: 54 LGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNL 112
Query: 168 LKNLQILVLRENDLIEIPKELGNLTRLRE---LHIQANRLTVLPPEIGNLDLASHKSVLK 224
+ N L I A ++ + + L
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 284
+ ++ + L L+ L L N+++ + P +L L ++
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL----DELSLNG 228
Query: 285 N-----PWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDL 339
N + + + L L N + + L L++L EL + AN+++ + P G L
Sbjct: 229 NQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTAL 287
Query: 340 ASHKSVLKMDFNPWVTPIADQLQV 363
+ + + L
Sbjct: 288 TNLELNENQLEDISPISNLKNLTY 311
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 56.8 bits (135), Expect = 1e-09
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 130 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELG 189
Y N + + + +L L + +N LPA L+ L N L E+P+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPELPQ 324
Query: 190 NLTRLRELHIQANRLTVLPPEIGNL 214
N L++LH++ N L P ++
Sbjct: 325 N---LKQLHVEYNPLREFPDIPESV 346
Score = 52.1 bits (123), Expect = 5e-08
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 167 NLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
+L+ L + N LIE+P L R L N L +P NL
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPELPQNLK----------- 327
Query: 227 FNPWLVLRENDLIEIPKELGNLSRLR 252
L + N L E P ++ LR
Sbjct: 328 ---QLHVEYNPLREFPDIPESVEDLR 350
Score = 51.4 bits (121), Expect = 8e-08
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 190 NLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLS 249
L EL++ N+L LP L+ L+ N L E+P+ N
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLE--------------RLIASFNHLAEVPELPQN-- 325
Query: 250 RLRELHIQANRLTVLPPEIGNL 271
L++LH++ N L P ++
Sbjct: 326 -LKQLHVEYNPLREFPDIPESV 346
Score = 47.5 bits (111), Expect = 1e-06
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 26/91 (28%)
Query: 247 NLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIE 306
L EL++ N+L LP L+ +L+ N L E
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLE-----------------------RLIASFNHLAE 318
Query: 307 IPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+P+ N L++LH++ N L P ++
Sbjct: 319 VPELPQN---LKQLHVEYNPLREFPDIPESV 346
Score = 47.1 bits (110), Expect = 2e-06
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
N+L LP P LE L ++N+L +P + + L+ L++ N P +
Sbjct: 294 NKLIELP---ALPPRLERLIASFNHL--AEVPE---LPQNLKQLHVEYNPLREFPDIPES 345
Query: 168 LKNLQI 173
+++L++
Sbjct: 346 VEDLRM 351
Score = 43.7 bits (101), Expect = 2e-05
Identities = 21/89 (23%), Positives = 27/89 (30%), Gaps = 26/89 (29%)
Query: 230 WLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVT 289
L + N LIE+P L L N L +P NL
Sbjct: 288 ELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQNLK----------------- 327
Query: 290 PIADQLQLVLRENDLIEIPKELGNLSRLR 318
QL + N L E P ++ LR
Sbjct: 328 ------QLHVEYNPLREFPDIPESVEDLR 350
Score = 40.6 bits (93), Expect = 2e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 169 KNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
+ L L L +P+ +L L N LT LP +L
Sbjct: 38 RQAHELELNNLGLSSLPELPPHLE---SLVASCNSLTELPELPQSL 80
Score = 40.2 bits (92), Expect = 3e-04
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI 182
L+L L SLP L +L N LP +LK+L + L
Sbjct: 40 AHELELNNLGL--SSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 183 EIPKEL 188
++P L
Sbjct: 95 DLPPLL 100
Score = 39.8 bits (91), Expect = 4e-04
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L L + LP +L + LV N L E+P+ +L L + L+ L
Sbjct: 40 AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96
Query: 208 PPEIGNLDLASHKSVLKMDFNPW 230
PP + L +++++ +
Sbjct: 97 PPLLEYLGVSNNQLEKLPELQNS 119
Score = 37.5 bits (85), Expect = 0.002
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 297 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNP 352
L + N LIE+P L L N L +P NL L +++NP
Sbjct: 289 LNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNL------KQLHVEYNP 335
Score = 37.1 bits (84), Expect = 0.003
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 194 LRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRE 253
EL + L+ LP +L+ LV N L E+P+ +L L
Sbjct: 40 AHELELNNLGLSSLPELPPHLE--------------SLVASCNSLTELPELPQSLKSLLV 85
Query: 254 LHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 287
+ L+ LPP + L +++++ +
Sbjct: 86 DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 119
Score = 36.3 bits (82), Expect = 0.005
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 297 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
L L L +P+ +L L N LT LP +L
Sbjct: 43 LELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSL 80
Score = 34.4 bits (77), Expect = 0.017
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 23/105 (21%)
Query: 249 SRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIP 308
+ EL + L+ LP +L+ LV N L E+P
Sbjct: 38 RQAHELELNNLGLSSLPELPPHLE-----------------------SLVASCNSLTELP 74
Query: 309 KELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
+ +L L + L+ LPP + L +++++ +
Sbjct: 75 ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 119
Score = 29.0 bits (63), Expect = 0.98
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 17 KAKKVLDESKEIKNPELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKG 76
A L + + + ELEL + GLSS ELP ++ + S N L ++ +
Sbjct: 27 MAVSRLRDCLDRQAHELELNNLGLSSLPELPP-----HLESLVASCNSLT-----ELPEL 76
Query: 77 LSNSKYNYIPILHVTSLPILPFLFLQFPCRMN 108
+ K + ++ +L LP L N
Sbjct: 77 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 108
Score = 28.3 bits (61), Expect = 1.5
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 161
LSSLP P LE L + N+L E LP L++L L
Sbjct: 48 LGLSSLPE---LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDL 96
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 49.3 bits (117), Expect = 4e-08
Identities = 30/125 (24%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 149 RALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLP 208
R L+L D VL + L + L L N L +P L L L L N L +
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 209 PEIGNLDLASHKSVLKMDFNPWLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPP 266
+ L+L N L + L + RL L++Q N L
Sbjct: 60 GVA------------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Query: 267 EIGNL 271
L
Sbjct: 108 IQERL 112
Score = 47.8 bits (113), Expect = 1e-07
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN--PWV 288
L L DL + L L + L + NRL LPP + L V
Sbjct: 3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 289 TPIADQLQLVLRENDL--IEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
+ +L+L N L + L + RL L++Q N L L
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
Score = 43.2 bits (101), Expect = 5e-06
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 27/114 (23%)
Query: 125 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL------------- 171
VL L + +L ++ + L + L L N LP + L+ L
Sbjct: 2 VLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 172 ---------QILVLRENDL--IEIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
Q L+L N L + L + RL L++Q N L L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
Score = 35.8 bits (82), Expect = 0.002
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 23/109 (21%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNL--------------------NEQSLPGNFFMLET 147
L+ L ++ LDL++N L N L
Sbjct: 8 KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR 66
Query: 148 LRALYLGDNDFEVLPA--EIGNLKNLQILVLRENDLIEIPKELGNLTRL 194
L+ L L +N + A + + L +L L+ N L + L +
Sbjct: 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 35.5 bits (81), Expect = 0.003
Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 26/139 (18%)
Query: 33 LELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTS 92
L LA K L+ L L+ +T + LSHN+L+ L+ + + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLL---VTHLDLSHNRLRALP-----PALAALRCLEVLQASDNA 54
Query: 93 LPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 152
L + + + L L N L + + L L
Sbjct: 55 LENVDGVANLPRLQ------------------ELLLCNNRLQQSAAIQPLVSCPRLVLLN 96
Query: 153 LGDNDFEVLPAEIGNLKNL 171
L N L +
Sbjct: 97 LQGNSLCQEEGIQERLAEM 115
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 51.3 bits (121), Expect = 5e-08
Identities = 38/198 (19%), Positives = 50/198 (25%), Gaps = 22/198 (11%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L++LP +L L+ N L S L L L D
Sbjct: 17 CDKRNLTALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTRLTQLNL-DRAELTKLQV 72
Query: 165 IGNLKNLQILVLRENDL-------------IEIPKELGNLTRLRELHIQANRLTVLPPEI 211
G L L L L N L + LT L ++
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 GNLDLASHKSVLKMDFNPWLVLRE--NDLIEIPKELGNLSRLRELHIQANRLTVLPPEIG 269
GN +L + N L L L L +Q N L +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 270 NLDLASHKSVLKMDFNPW 287
+ NPW
Sbjct: 193 GS---HLLPFAFLHGNPW 207
Score = 46.2 bits (108), Expect = 3e-06
Identities = 38/208 (18%), Positives = 60/208 (28%), Gaps = 23/208 (11%)
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE-------IGNLDL 216
E+ + + + + +L +P +L LH+ N L + L+L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 217 ASHKSVLKMDFNPWLVLRENDLIEIPKELGNL-----SRLRELHIQANRLTVLPPEIGNL 271
+ VL DL + L L L + NRLT LP
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 272 DLASHKSVLKMDFNPWVTP------IADQLQLVLRENDLIEIPKELGNLSRLRELHIQAN 325
+ LK + + P + + N L L L L +Q N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 326 RLTVLPPEIGNLDLASHKSVLKMDFNPW 353
L +P + NPW
Sbjct: 183 SLYTIPKGFFGS---HLLPFAFLHGNPW 207
Score = 43.6 bits (101), Expect = 2e-05
Identities = 18/81 (22%), Positives = 25/81 (30%)
Query: 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 161
+ + N L +LP G NN + G LE L L L +N +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 162 PAEIGNLKNLQILVLRENDLI 182
P L L N +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWL 208
Score = 39.7 bits (91), Expect = 3e-04
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 82 YNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 141
N + L L P L N L+ L L N+L ++P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKG 190
Query: 142 FFMLETLRALYLGDNDF 158
FF L +L N +
Sbjct: 191 FFGSHLLPFAFLHGNPW 207
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 50.6 bits (119), Expect = 1e-07
Identities = 47/244 (19%), Positives = 75/244 (30%), Gaps = 25/244 (10%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSN------SKYNYIPILHVTSLPILPFLFLQFPCRMN 108
RI L N++ + + N I + L
Sbjct: 34 SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 109 RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGN 167
S P F L L L ++ PG F L L+ LYL DN + LP + +
Sbjct: 93 LRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 168 LKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMD 226
L NL L L N + +P+ L L L + NR+ + P L +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 227 FNPW--------------LVLRENDLIEIPKELGNLSRLRELHIQANRLT-VLPPEIGNL 271
L L +N + + + L++ ++ + LP +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271
Query: 272 DLAS 275
DL
Sbjct: 272 DLKR 275
Score = 46.0 bits (107), Expect = 3e-06
Identities = 48/271 (17%), Positives = 81/271 (29%), Gaps = 47/271 (17%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE----- 159
C L ++P G + + L N ++ +F L L+L N
Sbjct: 18 CPQQGLQAVPVGI--PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAA 74
Query: 160 ---------------------VLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLREL 197
V PA L L L L L E+ L L+ L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 198 HIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKE-LGNLSRLRELHI 256
++Q N L LP + + + L L N + +P+ L L L +
Sbjct: 135 YLQDNALQALPDD----------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 257 QANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQ-----LVLRENDLIEIPKEL 311
NR+ + P L + + A L L +N + +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
Query: 312 GNLSRLRELHIQANRLT-VLPPEIGNLDLAS 341
+ L++ ++ + LP + DL
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Score = 33.6 bits (75), Expect = 0.032
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 82 YNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 141
N I + + L L + P F L L L NN
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEA 220
Query: 142 FFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLI-EIPKELGNLTRLRELH 198
L L+ L L DN + LQ +++ +P+ L L+ L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR-DLKRLA 277
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 46.3 bits (108), Expect = 3e-06
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 169 KNLQILVLRENDLI-EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
KNL L LR N + +P+ L L L L++ N L P+ GNL V
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL---QRFDVSAYAN 300
Query: 228 NPWL 231
N L
Sbjct: 301 NKCL 304
Score = 45.9 bits (107), Expect = 4e-06
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 152 YLGDNDFE-VLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPP 209
L +N LP + LK L L + N+L + GNL R N+ P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
Score = 44.0 bits (102), Expect = 2e-05
Identities = 41/263 (15%), Positives = 73/263 (27%), Gaps = 20/263 (7%)
Query: 32 ELELADKGLSSFEELP-GLMNMLYITRITLSHNKLKGEIIVQVIKGLS-----NSKYNYI 85
L+L+ L +P L N+ Y+ + + I I L+ + +
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 86 PILHVTSLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML 145
L + L +LP + P L + N ++
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 146 ETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLT 205
+ ++ + N L +L + L + +++ T
Sbjct: 174 KLFTSMTISRN----------RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 206 VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVL 264
N V L LR N + +P+ L L L L++ N L
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 265 PPEIGNLDLASHKSVLKMDFNPW 287
P+ GNL V N
Sbjct: 284 IPQGGNL---QRFDVSAYANNKC 303
Score = 43.6 bits (101), Expect = 2e-05
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 299 LRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPW 353
LR N + +P+ L L L L++ N L P+ GNL V N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL---QRFDVSAYANNKC 303
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 45.7 bits (106), Expect = 5e-06
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-----DFEVLPAEIGNLKNLQILVLR 177
++ LD+ L++ +L+ + + L D + + + + L L LR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 178 ENDL-IEIPKELGNLTRLRELHIQANRL 204
N+L + + IQ L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 39.6 bits (90), Expect = 6e-04
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 120 FPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDF------EVLPAEIGNLKN 170
VL VL L ++++ SL +LR L L +N +++ +
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427
Query: 171 LQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVL 207
L+ LVL + E ++ L+ L L V+
Sbjct: 428 LEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459
Score = 34.6 bits (77), Expect = 0.018
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 139 PGNFFMLETLRALYLGDNDF-----EVLPAEIGNLKNLQILVLRENDL-IEIPKELG--- 189
G LR L+L D D L A + +L+ L L N L +L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 190 --NLTRLRELHIQANRLT 205
L +L + +
Sbjct: 422 RQPGCLLEQLVLYDIYWS 439
Score = 33.8 bits (75), Expect = 0.030
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 110 LSSLPRGFGAFPVLEVLDLTYNNLNE-------QSLPGNFFMLETLRALYLGDNDF---- 158
SSL A L LDL+ N L + +S+ +LE L L D +
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV---LYDIYWSEEM 442
Query: 159 -EVLPAEIGNLKNLQIL 174
+ L A + +L+++
Sbjct: 443 EDRLQALEKDKPSLRVI 459
Score = 33.0 bits (73), Expect = 0.060
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 55 ITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLP 114
I + + +L +++ L + ++ + + R +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQ-----VVRLDDCGL----------TEARCKDIS 48
Query: 115 RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF 158
P L L+L N L + + L+ ++ L L +
Sbjct: 49 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
Score = 31.5 bits (69), Expect = 0.19
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 31/95 (32%)
Query: 170 NLQILVLRENDL--IEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDF 227
++Q L ++ +L + L L + + + + LT
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---------------------- 40
Query: 228 NPWLVLRENDLIEIPKELGNLSRLRELHIQANRLT 262
E +I L L EL++++N L
Sbjct: 41 -------EARCKDISSALRVNPALAELNLRSNELG 68
Score = 28.4 bits (61), Expect = 1.7
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 230 WLVLRENDL-----IEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLA-------SHK 277
L L + D+ + L LREL + N L + G L L
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG----DAGILQLVESVRQPGCLL 428
Query: 278 SVLKMDFNPWVTPIADQLQLVLRENDLIEI 307
L + W + D+LQ + ++ + +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
Score = 27.6 bits (59), Expect = 2.5
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 23/83 (27%)
Query: 251 LRELHIQANRLT-----VLPPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLI 305
++ L IQ L+ L P + V+++D L E
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQC------QVVRLDDCG------------LTEARCK 45
Query: 306 EIPKELGNLSRLRELHIQANRLT 328
+I L L EL++++N L
Sbjct: 46 DISSALRVNPALAELNLRSNELG 68
Score = 26.9 bits (57), Expect = 4.6
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 34 ELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYN 83
+++D SS L+ + + LS+N L I+Q+++ +
Sbjct: 380 DVSDSSCSSLAA--TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 43.9 bits (102), Expect = 1e-05
Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 14/203 (6%)
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L + G ++ + +L + L + I + L L L ++ N++
Sbjct: 18 LANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
T + NL + + + I+ + L VL
Sbjct: 76 TD-LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 265 PPEIGNLDLASHKSVLKMDFNPWVTPI----------ADQLQLVLRENDLIEIPKELGNL 314
++ + S + L + +L + +++ I L +L
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194
Query: 315 SRLRELHIQANRLTVLPPEIGNL 337
L E+H++ N+++ + P + N
Sbjct: 195 PNLIEVHLKNNQISDVSP-LANT 216
Score = 30.8 bits (68), Expect = 0.21
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 102 QFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 161
Q+ N S L L N +++ S L L ++L +N +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDV 210
Query: 162 PAEIGNLKNLQILVLR 177
+ N NL I+ L
Sbjct: 211 S-PLANTSNLFIVTLT 225
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 42.1 bits (97), Expect = 3e-05
Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 21/180 (11%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 164
C L +PR L L N L S G F L L L L N +
Sbjct: 15 CTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 165 IGNLKNLQILVLREND--LIEIPKELGNLTRLRELHIQANRLTVLPPEI----------- 211
+ + + K L +L+ L++ N+++ + P
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 212 --GNLDLASHKSVLKMDFNPWLVLRENDLI-EIPKELGNLSRLRELHIQANRLTVLPPEI 268
N + ++ L P ++ + ++ + +
Sbjct: 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCSSENS 189
Score = 27.8 bits (60), Expect = 1.8
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 233 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGN-----LDLASHKSVLKMDFNPW 287
L EIP+++ EL + N L + + L K P
Sbjct: 15 CTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 288 VTPIADQLQLVLREND--LIEIPKELGNLSRLRELHIQANRLTVLPPEI 334
A +Q + + K L +L+ L++ N+++ + P
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.7 bits (93), Expect = 1e-04
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 165 IGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLTVLPP 209
IL + + +P L NL +LR L LP
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
Score = 33.3 bits (74), Expect = 0.036
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 142 FFMLETLRALYLGDNDFEVLPAEI-GNLKNLQILVLRENDLIEIP 185
F L + LP+ NLK L+ +L ++P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 33.0 bits (73), Expect = 0.050
Identities = 13/83 (15%), Positives = 16/83 (19%), Gaps = 35/83 (42%)
Query: 184 IPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPK 243
+ L I R+ LP
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYG-------------------------------- 220
Query: 244 ELGNLSRLRELHIQANRLTVLPP 266
L NL +LR L LP
Sbjct: 221 -LENLKKLRARST--YNLKKLPT 240
Score = 31.0 bits (68), Expect = 0.17
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 170 NLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPE 210
+ ++ + +E+ + EIP +L EL +L V+
Sbjct: 9 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKG 47
Score = 31.0 bits (68), Expect = 0.19
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF 143
C+ ++++ +P L L + + F
Sbjct: 15 CQESKVTEIPSDL--PRNAIELRFVLTKL--RVIQKGAF 49
Score = 30.3 bits (66), Expect = 0.31
Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 28/214 (13%)
Query: 147 TLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKE-LGNLTRLRELHIQANRLT 205
+ R ++ +P+++ +N L L I K L ++ I N +
Sbjct: 9 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
Query: 206 VLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLP 265
+ +L + N L + +P L + + +
Sbjct: 67 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126
Query: 266 PEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIE------------------- 306
+ LD+ + ++ ++ N +V + + L L +N + E
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186
Query: 307 ------IPKELGNLSRLRELHIQANRLTVLPPEI 334
S L I R+ LP
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220
Score = 29.5 bits (64), Expect = 0.53
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 117 FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLP 162
F +LD++ + SLP L+ LRA + + LP
Sbjct: 197 FHGASGPVILDISRTRI--HSLPSYGLENLKKLRARST--YNLKKLP 239
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 38.5 bits (88), Expect = 6e-04
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 15/188 (7%)
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L LG + ++ +L + L + I + L L +++ N+L
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL 74
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
T + NL + L + N + L L
Sbjct: 75 TD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133
Query: 265 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQA 324
+ S S L ++ + K L NL+ L L I +
Sbjct: 134 ELSSNTISDISALSGLTSLQQLN------------FSSNQVTDLKPLANLTTLERLDISS 181
Query: 325 NRLTVLPP 332
N+++ +
Sbjct: 182 NKVSDISV 189
Score = 35.8 bits (81), Expect = 0.004
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 32 ELELADKGLSSFEELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVT 91
L+ G+ S + G+ + +T+I S+N+L ++ + L + N I +T
Sbjct: 44 TLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 100
Query: 92 SLPILPFLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL 151
L L L P L L+L+ N +++ S L+ L
Sbjct: 101 PLANLTNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQLNFS 158
Query: 152 YLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLREL 197
D + + NL L+ L + N + +I L LT L L
Sbjct: 159 SNQVTDLK----PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 39.1 bits (89), Expect = 6e-04
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 148 LRALYLGDNDFEVLPAEIGNLKNLQILVLRENDL-----IEIPKELGNLTRLRELHIQAN 202
L+ + D + + A + +++ +VL N + + + + + L
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 203 RLTVLPPEI 211
+ EI
Sbjct: 70 FTGRVKDEI 78
Score = 36.8 bits (83), Expect = 0.004
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 169 KNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 228
K+L++ + D + L ++E+ + N + + ++AS K + +F+
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 229 PWLVLRENDLI 239
R D I
Sbjct: 68 DIFTGRVKDEI 78
Score = 34.1 bits (76), Expect = 0.026
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 19/82 (23%)
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILV 175
L+ L L YN + ++ + + +L L
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVR-------------------TLKTVIDEKMPDLLFLE 308
Query: 176 LRENDLIEIPKELGNLTRLREL 197
L N E + + +
Sbjct: 309 LNGNRFSEEDDVVDEIREVFST 330
Score = 31.4 bits (69), Expect = 0.19
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 141 NFFMLETLRALYLGDNDFEVLPAEIGNLKN--LQILVLRENDL-----IEIPKEL-GNLT 192
L L + L+N LQ L L+ N++ + + +
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302
Query: 193 RLRELHIQANRLTVLPPEIGNL 214
L L + NR + + +
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEI 324
Score = 31.0 bits (68), Expect = 0.24
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAE 164
S+ ++ + L+ N + + L N + L D + E
Sbjct: 18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE 77
Query: 165 I 165
I
Sbjct: 78 I 78
Score = 30.6 bits (67), Expect = 0.28
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 233 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 285
+ D + L ++E+ + N + + ++AS K + +F+
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Score = 30.6 bits (67), Expect = 0.28
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 299 LRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFN 351
+ D + L ++E+ + N + + ++AS K + +F+
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Score = 26.8 bits (57), Expect = 4.9
Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 222 VLKMDFNPWLVLRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNL 271
L++ +N + + + + + + L L + NR + + +
Sbjct: 277 TLRLQYNE---IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 324
Score = 26.0 bits (55), Expect = 8.3
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 299 LRENDLIEIPKEL-GNLSRLRELHIQANRLTVLPPEIGNL 337
+ + + + + + L L + NR + + +
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 324
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 37.5 bits (86), Expect = 7e-04
Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 8/150 (5%)
Query: 108 NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 167
++ L L +L + L + L N
Sbjct: 7 EQVEQLKLIMSKRYDGSQQAL---DLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63
Query: 168 LKNLQILVLRENDLI---EIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLK 224
+ L L L N L ++ + L+ L++ N L + L
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELW 121
Query: 225 MDFNPWLVLRENDLIEIPKELGNLSRLREL 254
+D N + I +L L
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Score = 34.8 bits (79), Expect = 0.006
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 11/142 (7%)
Query: 153 LGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIG 212
L E L + + L L P +L L+ +++ L
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 213 NLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 272
N+ ++ ++ + L+ L++ N L +
Sbjct: 63 NIPELLSLNLSNNRLYRL--------DDMSSIVQKAPNLKILNLSGNELKSERE--LDKI 112
Query: 273 LASHKSVLKMDFNPWVTPIADQ 294
L +D N DQ
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQ 134
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 38.1 bits (87), Expect = 8e-04
Identities = 29/193 (15%), Positives = 70/193 (36%), Gaps = 16/193 (8%)
Query: 145 LETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L + L ++ ++ +D+ + + L + +L + N+L
Sbjct: 23 FAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL 80
Query: 205 TVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRLRELHIQANRLTVL 264
T LA+ K++ + + V + L ++ K + L ++ N ++ +
Sbjct: 81 T------DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKL-------KSLSLEHNGISDI 127
Query: 265 PPEIGNLDLASHKSVLKMDFNPWVTPIADQLQLVLRENDLIEIPKELGNLSRLRELHIQA 324
+ L S + V +L + E++ I L L++L+ L++
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187
Query: 325 NRLTVLPPEIGNL 337
N ++ L + L
Sbjct: 188 NHISDLRA-LAGL 199
Score = 31.9 bits (71), Expect = 0.081
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 36/185 (19%)
Query: 120 FPVLEVLDLTYNNLNEQSLPGNFFM--LETLRALYLGDNDFEVLPAEIGNLKNLQILVLR 177
F + +NL ++S+ L ++ + ++D + + I L N+ L L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLN 76
Query: 178 ENDLIEIPKELGNLTRLRELHI------------------QANRLTVLPPEIGNLDLASH 219
N + K L NL L L + + +I L
Sbjct: 77 GNK-LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135
Query: 220 KSVLKMDFNPWL-------------VLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 266
L + N + E++ I L L++L+ L++ N ++ L
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 267 EIGNL 271
+ L
Sbjct: 196 -LAGL 199
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 36.8 bits (84), Expect = 0.001
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 3/133 (2%)
Query: 132 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQILVLRENDLIEIPKELGNL 191
L EQ+ + R L L V+ L + +N++ ++ L
Sbjct: 6 ELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLL 62
Query: 192 TRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLRENDLIEIPKELGNLSRL 251
RL+ L + NR+ + + + +L + L + + R
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 252 RELHIQANRLTVL 264
+ + RL V+
Sbjct: 123 PVTNKKHYRLYVI 135
Score = 33.8 bits (76), Expect = 0.017
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 303 DLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLD 338
+LIE + N R REL ++ ++ V+ LD
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLD 41
Score = 28.8 bits (63), Expect = 0.63
Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 15/141 (10%)
Query: 44 EELPGLMNMLYITRITLSHNKLKGEIIVQVIKGLSNSK-----YNYIPILHVTS-LPILP 97
E+ N + + L K+ +I + L N I L L L
Sbjct: 9 EQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLK 66
Query: 98 FLFLQFPCRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 157
L + A P L L LT N+L E L++L L + N
Sbjct: 67 TLLVNNNRIC---RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123
Query: 158 FEVLPAE----IGNLKNLQIL 174
I + +++L
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVL 144
Score = 28.4 bits (62), Expect = 0.88
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 296 QLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPP 332
+L LR + I L + + N + L
Sbjct: 22 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 159 EVLPAEIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQ 200
E + A + LK + L L N++ +I L + LR L +
Sbjct: 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLG 78
Score = 33.9 bits (76), Expect = 0.019
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 123 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIL 174
E ++L + + L+ + L L N+ E + + + ++NL+IL
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRIL 75
Score = 29.3 bits (64), Expect = 0.62
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 163 AEIGNLKNLQILVLRENDLI-------EIPKELGNLTRLRELHIQANRLTVLPPEIGNL 214
K++ + +L ++ L L + L + N + + + +
Sbjct: 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGM 69
Score = 28.9 bits (63), Expect = 0.89
Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 292 ADQLQLVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 337
A++++L + ++ L L + L + N + + + +
Sbjct: 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGM 69
Score = 27.3 bits (59), Expect = 2.7
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 231 LVLRENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNL 271
L + ++ L L + L + N + + + +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGM 69
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.9 bits (81), Expect = 0.006
Identities = 30/268 (11%), Positives = 68/268 (25%), Gaps = 39/268 (14%)
Query: 56 TRITLSHNKLKGEIIVQVIKGLSNSKYNYIPILHVTSLPILPFLFLQFPCRMNRLSSLPR 115
+ L+ L ++ + +L + F C + +
Sbjct: 3 QTLDLTGKNLHPDVTGR----------------------LLSQGVIAFRCPRSFMDQPLA 40
Query: 116 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIL 174
+ ++ +DL+ + + +L G L+ L L + + + NL L
Sbjct: 41 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100
Query: 175 VLRENDLIEIPKELGNLTRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWLVLR 234
L L+ L +L + + + +
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLD----------------ELNLSWCFDFTEKHVQVAVA 144
Query: 235 ENDLIEIPKELGNLSRLRELHIQANRLTVLPPEIGNLDLASHKSVLKMDFNPWVTPIADQ 294
L + + + + P + S +
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204
Query: 295 LQLVLRENDLIEIPKELGNLSRLRELHI 322
L L + + E ELG + L+ L +
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQV 232
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 30.9 bits (69), Expect = 0.28
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 25/100 (25%)
Query: 271 LDLASH--KSVLKMDFNPWVTPIA-------------DQLQLVLRENDLIEIPKELGNLS 315
D SH K+V+ + A L +RE +++ + L+
Sbjct: 785 QD-GSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRE-TMVDTYESCDVLA 842
Query: 316 RLRE-----LHIQANRLTVLPPEIGNLDLASHKSVLKMDF 350
+ LH P GNL+L + +L+ DF
Sbjct: 843 DFYDQFADQLHESQLDKMPALPAKGNLNL---RDILESDF 879
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 29.8 bits (65), Expect = 0.31
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 105 CRMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPA 163
C + L L + + + L LR L + + V P
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 164 EIGNLKNLQILVLRENDLIEIPKELGNLTRLRELHIQANRL 204
L L L N L + + L+EL + N L
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,399,116
Number of extensions: 67043
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 130
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)