Query psy9869
Match_columns 111
No_of_seqs 105 out of 1054
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 1.6E-20 5.3E-25 114.7 8.6 67 15-81 15-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 1.9E-20 6.5E-25 113.5 8.5 65 17-81 12-76 (80)
3 1b8i_A Ultrabithorax, protein 99.8 1.1E-20 3.7E-25 114.9 6.7 67 16-82 14-80 (81)
4 2cue_A Paired box protein PAX6 99.8 4.6E-20 1.6E-24 111.7 9.1 66 18-83 3-68 (80)
5 1nk2_P Homeobox protein VND; h 99.8 5.1E-20 1.7E-24 110.8 8.9 66 17-82 4-69 (77)
6 2da3_A Alpha-fetoprotein enhan 99.8 2.3E-20 7.8E-25 112.9 7.1 65 17-81 12-76 (80)
7 2dmu_A Homeobox protein goosec 99.8 4.1E-20 1.4E-24 109.3 8.0 64 18-81 3-66 (70)
8 2cra_A Homeobox protein HOX-B1 99.8 2.9E-20 9.8E-25 110.0 7.1 64 18-81 3-66 (70)
9 2h1k_A IPF-1, pancreatic and d 99.8 3.5E-20 1.2E-24 107.6 7.2 60 21-80 2-61 (63)
10 3a01_A Homeodomain-containing 99.8 3.2E-20 1.1E-24 115.5 7.3 69 16-84 11-79 (93)
11 2vi6_A Homeobox protein nanog; 99.8 1.9E-20 6.5E-25 108.3 5.8 60 21-80 2-61 (62)
12 2da2_A Alpha-fetoprotein enhan 99.8 4.6E-20 1.6E-24 109.0 7.4 64 18-81 3-66 (70)
13 2dmq_A LIM/homeobox protein LH 99.8 9.8E-20 3.4E-24 110.2 8.7 63 19-81 4-66 (80)
14 2e1o_A Homeobox protein PRH; D 99.8 9.9E-20 3.4E-24 107.7 8.3 63 19-81 4-66 (70)
15 2dms_A Homeobox protein OTX2; 99.8 7.5E-20 2.6E-24 110.8 7.9 64 18-81 3-66 (80)
16 1puf_A HOX-1.7, homeobox prote 99.8 1.7E-19 6E-24 108.5 9.3 65 19-83 10-74 (77)
17 1wh5_A ZF-HD homeobox family p 99.8 7.2E-20 2.5E-24 111.1 7.3 62 18-79 13-78 (80)
18 2djn_A Homeobox protein DLX-5; 99.8 5.2E-20 1.8E-24 108.9 6.4 64 18-81 3-66 (70)
19 2hdd_A Protein (engrailed home 99.8 6.5E-20 2.2E-24 105.7 6.5 58 22-79 3-60 (61)
20 1zq3_P PRD-4, homeotic bicoid 99.8 1E-19 3.5E-24 107.1 7.5 61 22-82 2-62 (68)
21 2da1_A Alpha-fetoprotein enhan 99.8 6.5E-20 2.2E-24 108.4 6.6 64 18-81 3-66 (70)
22 1ig7_A Homeotic protein MSX-1; 99.8 1.2E-19 4E-24 103.6 7.3 57 23-79 1-57 (58)
23 1fjl_A Paired protein; DNA-bin 99.8 2E-19 6.8E-24 109.1 8.3 64 19-82 15-78 (81)
24 1jgg_A Segmentation protein EV 99.8 1.8E-19 6.1E-24 103.5 6.8 58 23-80 2-59 (60)
25 3nar_A ZHX1, zinc fingers and 99.8 1.2E-19 4E-24 113.5 6.2 67 15-81 18-84 (96)
26 3rkq_A Homeobox protein NKX-2. 99.8 2.1E-19 7.1E-24 102.3 6.7 57 22-78 2-58 (58)
27 2m0c_A Homeobox protein arista 99.8 2.8E-19 9.7E-24 106.8 7.6 63 19-81 6-68 (75)
28 1yz8_P Pituitary homeobox 2; D 99.8 6.1E-20 2.1E-24 108.0 4.6 63 20-82 1-63 (68)
29 2l7z_A Homeobox protein HOX-A1 99.8 3.1E-19 1.1E-23 106.4 7.7 62 20-81 5-66 (73)
30 1ftt_A TTF-1 HD, thyroid trans 99.8 2.7E-19 9.3E-24 105.3 7.3 60 22-81 2-61 (68)
31 1ahd_P Antennapedia protein mu 99.8 1.8E-19 6.1E-24 106.1 6.3 60 22-81 2-61 (68)
32 1bw5_A ISL-1HD, insulin gene e 99.8 1.9E-19 6.6E-24 105.2 6.3 60 22-81 3-62 (66)
33 3a02_A Homeobox protein arista 99.8 2.3E-19 7.7E-24 103.1 6.0 57 25-81 2-58 (60)
34 2da4_A Hypothetical protein DK 99.8 1.8E-19 6.2E-24 109.1 5.7 62 19-80 5-70 (80)
35 1wh7_A ZF-HD homeobox family p 99.8 2.1E-19 7.1E-24 109.0 5.9 62 17-79 12-78 (80)
36 2r5y_A Homeotic protein sex co 99.8 3.2E-19 1.1E-23 109.8 6.4 64 18-81 24-87 (88)
37 2k40_A Homeobox expressed in E 99.8 4.8E-19 1.6E-23 103.8 6.6 60 22-81 1-60 (67)
38 3a03_A T-cell leukemia homeobo 99.8 6.1E-19 2.1E-23 100.1 6.5 54 27-80 2-55 (56)
39 1akh_A Protein (mating-type pr 99.8 3.9E-19 1.3E-23 102.4 5.7 59 20-78 3-61 (61)
40 1uhs_A HOP, homeodomain only p 99.8 8.9E-19 3E-23 104.1 7.4 59 23-81 2-61 (72)
41 1b72_A Protein (homeobox prote 99.8 6.8E-19 2.3E-23 110.1 7.0 64 18-81 30-93 (97)
42 2ecc_A Homeobox and leucine zi 99.8 9.5E-19 3.3E-23 104.9 7.2 57 24-80 5-61 (76)
43 2da5_A Zinc fingers and homeob 99.8 1.4E-18 4.6E-23 104.1 7.7 59 23-81 8-66 (75)
44 2hi3_A Homeodomain-only protei 99.8 1.6E-18 5.6E-23 103.2 7.7 59 23-81 3-62 (73)
45 1x2n_A Homeobox protein pknox1 99.8 2.1E-18 7.3E-23 102.6 8.1 64 18-81 3-69 (73)
46 2cuf_A FLJ21616 protein; homeo 99.8 1.5E-18 5.2E-23 108.2 7.7 65 18-82 3-82 (95)
47 2ly9_A Zinc fingers and homeob 99.8 1.1E-18 3.8E-23 104.0 6.7 61 21-81 5-65 (74)
48 1b72_B Protein (PBX1); homeodo 99.8 6.5E-19 2.2E-23 108.1 5.2 62 23-84 2-66 (87)
49 2dn0_A Zinc fingers and homeob 99.8 1.4E-18 4.9E-23 104.2 6.4 61 21-81 7-67 (76)
50 1puf_B PRE-B-cell leukemia tra 99.8 9.9E-19 3.4E-23 104.1 5.5 62 22-83 1-65 (73)
51 1du6_A PBX1, homeobox protein 99.7 1.4E-18 4.9E-23 100.9 5.0 59 21-79 2-63 (64)
52 1wi3_A DNA-binding protein SAT 99.7 5.6E-18 1.9E-22 98.9 7.1 60 18-77 3-63 (71)
53 2dmn_A Homeobox protein TGIF2L 99.7 1E-17 3.5E-22 102.1 8.4 64 18-81 3-69 (83)
54 2xsd_C POU domain, class 3, tr 99.7 2.6E-18 8.9E-23 116.7 6.0 67 16-82 93-159 (164)
55 2da6_A Hepatocyte nuclear fact 99.7 1.4E-17 4.9E-22 104.8 8.5 65 18-82 2-87 (102)
56 1k61_A Mating-type protein alp 99.7 8E-18 2.7E-22 96.5 6.7 55 26-80 2-59 (60)
57 1au7_A Protein PIT-1, GHF-1; c 99.7 3.9E-18 1.3E-22 113.9 5.9 65 16-80 81-145 (146)
58 1e3o_C Octamer-binding transcr 99.7 4.1E-18 1.4E-22 115.3 5.8 61 20-80 99-159 (160)
59 3d1n_I POU domain, class 6, tr 99.7 1.4E-17 4.6E-22 111.7 7.5 63 17-79 88-150 (151)
60 3nau_A Zinc fingers and homeob 99.7 1.5E-17 5E-22 96.9 6.3 53 29-81 11-63 (66)
61 1mnm_C Protein (MAT alpha-2 tr 99.7 1.7E-17 5.7E-22 101.9 6.8 59 20-78 25-86 (87)
62 2cqx_A LAG1 longevity assuranc 99.7 6E-18 2E-22 100.7 4.6 59 22-80 8-67 (72)
63 2ecb_A Zinc fingers and homeob 99.7 3.3E-17 1.1E-21 101.1 7.8 53 28-80 17-69 (89)
64 1le8_B Mating-type protein alp 99.7 2.4E-17 8.1E-22 100.4 6.7 59 23-81 3-64 (83)
65 2dmp_A Zinc fingers and homeob 99.7 7.3E-17 2.5E-21 99.5 8.3 56 26-81 17-72 (89)
66 2l9r_A Homeobox protein NKX-3. 99.7 6E-17 2E-21 95.6 6.6 57 25-81 7-63 (69)
67 3l1p_A POU domain, class 5, tr 99.7 1.6E-17 5.6E-22 111.8 4.6 61 20-80 94-154 (155)
68 2e19_A Transcription factor 8; 99.7 6.6E-17 2.2E-21 94.1 6.0 53 27-79 8-60 (64)
69 1x2m_A LAG1 longevity assuranc 99.7 3E-17 1E-21 95.4 4.0 50 31-80 9-59 (64)
70 1lfb_A Liver transcription fac 99.7 3.7E-17 1.3E-21 102.7 4.5 63 20-82 7-90 (99)
71 2d5v_A Hepatocyte nuclear fact 99.7 8.5E-17 2.9E-21 109.0 5.4 64 19-82 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 5E-16 1.7E-20 91.0 5.3 57 27-83 3-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 4.4E-15 1.5E-19 103.1 3.3 60 20-79 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 2.1E-14 7.3E-19 84.1 5.4 46 31-76 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.5 8.6E-14 2.9E-18 85.5 6.9 58 25-82 8-68 (89)
76 2h8r_A Hepatocyte nuclear fact 99.5 6.7E-14 2.3E-18 98.6 5.7 59 19-77 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 8.1E-13 2.8E-17 98.8 4.5 55 24-78 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 2.6E-09 8.8E-14 55.2 -0.0 20 64-83 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.5 0.0036 1.2E-07 36.2 3.8 44 30-73 14-57 (70)
80 2glo_A Brinker CG9653-PA; prot 87.5 0.73 2.5E-05 24.8 3.5 45 26-71 3-47 (59)
81 1hlv_A CENP-B, major centromer 83.8 3.5 0.00012 25.2 5.8 48 25-75 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 77.2 8.2 0.00028 22.1 6.1 44 23-71 17-60 (87)
83 3hug_A RNA polymerase sigma fa 76.4 7.8 0.00027 22.3 5.3 48 29-81 38-85 (92)
84 1iuf_A Centromere ABP1 protein 74.8 11 0.00037 23.8 6.1 53 22-74 5-61 (144)
85 2jn6_A Protein CGL2762, transp 71.8 7.9 0.00027 22.4 4.6 44 26-73 3-47 (97)
86 2o8x_A Probable RNA polymerase 67.4 6.9 0.00024 20.9 3.4 48 28-80 15-62 (70)
87 2q24_A Putative TETR family tr 67.2 3.3 0.00011 26.5 2.3 44 34-79 21-64 (194)
88 2qko_A Possible transcriptiona 65.0 2.6 9E-05 27.4 1.5 44 34-78 34-77 (215)
89 1tc3_C Protein (TC3 transposas 61.9 12 0.00041 18.0 4.4 40 28-72 5-44 (51)
90 2p7v_B Sigma-70, RNA polymeras 59.3 14 0.00047 19.9 3.6 51 28-79 5-55 (68)
91 3bru_A Regulatory protein, TET 59.1 4.9 0.00017 26.0 2.0 45 34-79 36-80 (222)
92 3g7r_A Putative transcriptiona 59.0 3.5 0.00012 27.1 1.2 46 34-80 41-86 (221)
93 3mzy_A RNA polymerase sigma-H 57.9 29 0.001 21.1 5.7 32 51-82 126-157 (164)
94 1je8_A Nitrate/nitrite respons 57.9 17 0.0006 20.4 4.1 52 24-81 17-68 (82)
95 1jko_C HIN recombinase, DNA-in 57.3 5 0.00017 19.8 1.5 21 52-72 24-44 (52)
96 2rn7_A IS629 ORFA; helix, all 55.5 18 0.00063 21.2 4.0 47 26-72 4-53 (108)
97 3dcf_A Transcriptional regulat 55.1 5 0.00017 25.7 1.5 45 34-79 37-81 (218)
98 3bni_A Putative TETR-family tr 54.6 3.6 0.00012 27.2 0.7 46 34-80 49-94 (229)
99 1s7o_A Hypothetical UPF0122 pr 54.4 28 0.00097 21.0 4.8 50 28-82 22-71 (113)
100 1x3u_A Transcriptional regulat 54.3 16 0.00055 19.9 3.4 47 29-81 17-63 (79)
101 1fse_A GERE; helix-turn-helix 54.0 23 0.0008 18.8 4.6 48 26-79 9-56 (74)
102 3bd1_A CRO protein; transcript 53.9 6.6 0.00023 21.7 1.7 23 52-74 14-36 (79)
103 2hin_A GP39, repressor protein 53.8 7.7 0.00026 21.9 2.0 22 52-73 13-34 (71)
104 3c57_A Two component transcrip 53.6 30 0.001 20.0 5.1 47 27-79 26-72 (95)
105 2hxi_A Putative transcriptiona 52.4 9.5 0.00032 25.9 2.6 55 24-79 24-79 (241)
106 3fiw_A Putative TETR-family tr 51.7 6.5 0.00022 26.0 1.7 55 23-78 19-74 (211)
107 1p4w_A RCSB; solution structur 51.2 36 0.0012 20.1 5.4 48 26-79 32-79 (99)
108 2qwt_A Transcriptional regulat 50.4 8.4 0.00029 24.6 2.0 44 34-79 19-62 (196)
109 1rp3_A RNA polymerase sigma fa 50.1 20 0.0007 23.5 4.0 47 29-80 188-234 (239)
110 3jsj_A Putative TETR-family tr 46.6 7.6 0.00026 24.4 1.3 44 34-79 15-58 (190)
111 2jpc_A SSRB; DNA binding prote 45.1 15 0.00052 19.0 2.2 27 53-79 17-43 (61)
112 2hxo_A Putative TETR-family tr 45.0 20 0.00068 24.1 3.3 56 23-79 10-66 (237)
113 2xi8_A Putative transcription 45.0 8.1 0.00028 20.1 1.1 23 52-74 17-39 (66)
114 1ku3_A Sigma factor SIGA; heli 44.5 37 0.0013 18.3 4.9 50 28-78 10-59 (73)
115 2r1j_L Repressor protein C2; p 44.2 8.6 0.00029 20.1 1.1 24 52-75 21-44 (68)
116 2rnj_A Response regulator prot 43.3 26 0.0009 19.9 3.3 49 26-80 27-75 (91)
117 2lv7_A Calcium-binding protein 42.9 48 0.0016 19.2 8.2 47 25-71 26-79 (100)
118 2pmy_A RAS and EF-hand domain- 42.5 19 0.00066 20.1 2.6 46 26-71 18-68 (91)
119 3i5g_B Myosin regulatory light 42.4 59 0.002 20.1 5.6 40 25-64 6-50 (153)
120 1zug_A Phage 434 CRO protein; 42.1 9.4 0.00032 20.2 1.0 24 52-75 19-42 (71)
121 3ppb_A Putative TETR family tr 41.8 12 0.00041 23.3 1.7 45 34-79 15-59 (195)
122 2g7g_A RHA04620, putative tran 41.8 12 0.0004 24.7 1.7 49 27-78 9-58 (213)
123 2iai_A Putative transcriptiona 41.7 12 0.00043 24.5 1.8 45 34-79 36-80 (230)
124 2rgt_A Fusion of LIM/homeobox 41.3 0.22 7.5E-06 32.8 -7.0 30 20-49 134-163 (169)
125 1fi6_A EH domain protein REPS1 41.2 35 0.0012 19.2 3.6 44 28-71 2-50 (92)
126 3bs3_A Putative DNA-binding pr 41.0 10 0.00036 20.3 1.2 23 52-74 26-48 (76)
127 1rzs_A Antirepressor, regulato 40.9 10 0.00035 20.3 1.1 19 52-70 13-31 (61)
128 2hku_A A putative transcriptio 40.3 12 0.00042 24.0 1.6 44 34-79 26-69 (215)
129 3rd3_A Probable transcriptiona 40.0 11 0.00039 23.5 1.4 45 34-79 16-60 (197)
130 1tty_A Sigma-A, RNA polymerase 39.8 19 0.00065 20.4 2.2 52 28-80 18-69 (87)
131 1c07_A Protein (epidermal grow 39.5 43 0.0015 19.0 3.8 44 28-71 3-51 (95)
132 2rek_A Putative TETR-family tr 39.5 8.4 0.00029 24.5 0.7 44 34-79 22-65 (199)
133 3omt_A Uncharacterized protein 39.4 12 0.0004 20.2 1.2 23 52-74 24-46 (73)
134 3ccy_A Putative TETR-family tr 39.1 20 0.0007 22.7 2.5 45 34-79 20-64 (203)
135 1adr_A P22 C2 repressor; trans 38.8 12 0.0004 20.1 1.1 24 52-75 21-44 (76)
136 1xsv_A Hypothetical UPF0122 pr 38.7 63 0.0021 19.3 4.7 50 28-82 25-74 (113)
137 2rae_A Transcriptional regulat 38.7 20 0.00067 22.7 2.4 45 34-79 23-67 (207)
138 2g7l_A TETR-family transcripti 38.2 20 0.00067 24.3 2.4 52 25-77 15-67 (243)
139 2b5a_A C.BCLI; helix-turn-heli 38.0 12 0.00042 20.1 1.1 23 52-74 26-48 (77)
140 2x48_A CAG38821; archeal virus 38.0 16 0.00056 18.5 1.6 36 31-71 18-53 (55)
141 3kz3_A Repressor protein CI; f 38.0 12 0.00042 20.6 1.1 24 52-75 28-51 (80)
142 3he0_A Transcriptional regulat 37.9 14 0.00049 23.0 1.6 46 33-79 16-61 (196)
143 1r69_A Repressor protein CI; g 37.3 13 0.00043 19.5 1.1 24 52-75 17-40 (69)
144 2x7l_M HIV REV; nuclear export 37.2 74 0.0025 19.7 5.2 43 35-91 16-58 (115)
145 2xdn_A HTH-type transcriptiona 36.5 20 0.00069 22.9 2.2 45 34-79 17-61 (210)
146 2i10_A Putative TETR transcrip 36.3 27 0.00093 22.3 2.8 46 33-79 16-61 (202)
147 2wiu_B HTH-type transcriptiona 36.2 19 0.00065 19.9 1.8 23 52-74 28-50 (88)
148 1or7_A Sigma-24, RNA polymeras 36.0 27 0.00091 22.2 2.7 29 52-80 159-187 (194)
149 2hyt_A TETR-family transcripti 35.6 25 0.00086 22.2 2.5 45 34-79 18-62 (197)
150 1t33_A Putative transcriptiona 35.6 12 0.00042 24.0 1.0 45 34-80 18-62 (224)
151 3ulq_B Transcriptional regulat 35.1 65 0.0022 18.4 4.9 49 24-78 25-73 (90)
152 1y7y_A C.AHDI; helix-turn-heli 35.0 15 0.0005 19.5 1.1 23 52-74 29-51 (74)
153 3b7h_A Prophage LP1 protein 11 34.9 14 0.00049 19.8 1.1 23 52-74 23-45 (78)
154 3vpr_A Transcriptional regulat 34.7 21 0.00073 22.3 2.1 43 34-77 9-51 (190)
155 3gzi_A Transcriptional regulat 34.6 27 0.00093 22.2 2.6 45 34-79 23-67 (218)
156 1u78_A TC3 transposase, transp 34.5 69 0.0024 19.0 4.4 41 27-72 5-45 (141)
157 2np5_A Transcriptional regulat 34.4 12 0.00043 23.9 0.9 45 34-79 15-59 (203)
158 2ict_A Antitoxin HIGA; helix-t 34.2 17 0.00058 20.6 1.4 23 52-74 24-46 (94)
159 2a6c_A Helix-turn-helix motif; 33.9 18 0.0006 20.2 1.4 23 52-74 34-56 (83)
160 2kpj_A SOS-response transcript 33.8 15 0.00052 20.9 1.1 23 52-74 25-47 (94)
161 2qtq_A Transcriptional regulat 33.6 25 0.00087 22.1 2.3 45 34-79 22-66 (213)
162 2fq4_A Transcriptional regulat 33.1 20 0.0007 22.6 1.7 43 34-77 18-60 (192)
163 3clo_A Transcriptional regulat 32.8 71 0.0024 21.7 4.6 50 27-82 196-245 (258)
164 2bnk_A Early protein GP16.7; D 32.6 64 0.0022 17.7 4.6 54 29-82 5-58 (67)
165 2q1z_A RPOE, ECF SIGE; ECF sig 32.3 35 0.0012 21.4 2.8 25 55-79 157-181 (184)
166 2zcm_A Biofilm operon icaabcd 32.3 23 0.00079 22.1 1.9 46 33-79 12-57 (192)
167 3kz9_A SMCR; transcriptional r 32.3 24 0.00082 22.0 2.0 45 34-79 23-67 (206)
168 2oer_A Probable transcriptiona 32.1 24 0.00082 22.7 2.0 42 37-79 33-74 (214)
169 3bqz_B HTH-type transcriptiona 32.1 24 0.00082 21.9 1.9 46 34-80 8-53 (194)
170 2jml_A DNA binding domain/tran 32.0 19 0.00064 20.2 1.3 20 52-71 8-27 (81)
171 2lhi_A Calmodulin, serine/thre 31.6 60 0.0021 20.5 3.9 38 26-63 2-44 (176)
172 1sgm_A Putative HTH-type trans 31.6 31 0.0011 21.2 2.4 45 34-79 12-57 (191)
173 2lfw_A PHYR sigma-like domain; 31.5 28 0.00096 21.8 2.2 47 28-79 93-139 (157)
174 3vib_A MTRR; helix-turn-helix 31.4 22 0.00075 22.7 1.7 44 34-78 16-59 (210)
175 3qbm_A TETR transcriptional re 31.3 20 0.00068 22.4 1.4 45 34-79 13-57 (199)
176 3fmy_A HTH-type transcriptiona 31.0 30 0.001 18.7 2.0 41 27-74 9-49 (73)
177 2fd5_A Transcriptional regulat 30.9 31 0.001 21.3 2.3 45 34-79 13-57 (180)
178 1j9i_A GPNU1 DBD;, terminase s 30.7 25 0.00087 18.9 1.7 22 52-73 5-26 (68)
179 2wui_A MEXZ, transcriptional r 30.6 27 0.00092 22.4 2.0 43 34-77 17-59 (210)
180 3him_A Probable transcriptiona 30.5 24 0.00082 22.1 1.7 45 34-79 22-66 (211)
181 2iu5_A DHAS, YCEG, HTH-type dh 30.4 23 0.0008 22.3 1.7 45 34-79 19-63 (195)
182 3kkd_A Transcriptional regulat 30.1 19 0.00066 23.5 1.3 45 34-79 41-85 (237)
183 2d6y_A Putative TETR family re 29.8 28 0.00097 22.2 2.0 45 34-79 14-58 (202)
184 3qkx_A Uncharacterized HTH-typ 29.7 30 0.001 21.3 2.1 45 34-79 14-58 (188)
185 3dew_A Transcriptional regulat 29.5 20 0.00067 22.4 1.2 45 34-79 14-58 (206)
186 2ef8_A C.ECOT38IS, putative tr 29.5 21 0.00071 19.5 1.2 23 52-74 26-48 (84)
187 2yve_A Transcriptional regulat 29.3 30 0.001 21.7 2.1 45 34-79 10-54 (185)
188 2pij_A Prophage PFL 6 CRO; tra 29.2 25 0.00086 18.4 1.4 22 52-73 16-37 (67)
189 3lwj_A Putative TETR-family tr 29.0 26 0.00089 21.9 1.7 45 34-79 18-62 (202)
190 2eh3_A Transcriptional regulat 28.7 27 0.00091 21.7 1.7 45 34-79 8-52 (179)
191 3s5r_A Transcriptional regulat 28.5 26 0.00088 22.2 1.6 45 34-79 16-60 (216)
192 2k9q_A Uncharacterized protein 28.1 20 0.00068 19.5 0.9 23 52-74 18-40 (77)
193 3aqt_A Bacterial regulatory pr 27.9 23 0.0008 23.4 1.4 45 34-79 52-96 (245)
194 3b81_A Transcriptional regulat 27.8 25 0.00084 22.0 1.4 46 34-80 17-62 (203)
195 3knw_A Putative transcriptiona 27.7 28 0.00096 21.9 1.7 45 34-79 20-64 (212)
196 3f6w_A XRE-family like protein 27.7 23 0.00077 19.4 1.1 23 52-74 30-52 (83)
197 3crj_A Transcription regulator 27.5 25 0.00084 22.4 1.4 45 34-79 20-64 (199)
198 2jrt_A Uncharacterized protein 27.3 94 0.0032 18.3 3.9 46 23-72 27-72 (95)
199 3cdl_A Transcriptional regulat 27.3 26 0.00089 22.3 1.5 45 34-79 15-59 (203)
200 3lsg_A Two-component response 27.2 40 0.0014 19.3 2.3 24 50-73 20-43 (103)
201 3anp_C Transcriptional repress 27.1 26 0.0009 22.2 1.5 45 34-79 15-59 (204)
202 3t72_q RNA polymerase sigma fa 26.9 1E+02 0.0035 18.1 5.5 52 28-80 19-70 (99)
203 2ras_A Transcriptional regulat 26.9 24 0.00082 22.4 1.3 44 34-78 17-60 (212)
204 1rkt_A Protein YFIR; transcrip 26.8 25 0.00087 22.3 1.4 45 34-79 18-62 (205)
205 3f1b_A TETR-like transcription 26.7 30 0.001 21.5 1.7 45 34-79 20-64 (203)
206 1vi0_A Transcriptional regulat 26.6 19 0.00066 23.1 0.8 45 34-79 14-58 (206)
207 2nx4_A Transcriptional regulat 26.6 31 0.001 21.8 1.7 44 35-79 17-60 (194)
208 2w53_A Repressor, SMet; antibi 26.5 26 0.0009 22.5 1.4 45 34-79 17-61 (219)
209 1lmb_3 Protein (lambda repress 26.5 24 0.00083 19.7 1.1 23 52-74 33-55 (92)
210 1pb6_A Hypothetical transcript 26.4 31 0.0011 21.7 1.8 45 34-79 24-68 (212)
211 2v57_A TETR family transcripti 26.4 23 0.00077 22.1 1.0 43 34-79 20-62 (190)
212 3lhq_A Acrab operon repressor 26.3 31 0.0011 21.7 1.7 45 34-79 20-64 (220)
213 3nrg_A TETR family transcripti 26.1 31 0.0011 21.8 1.7 45 34-79 19-63 (217)
214 2o7t_A Transcriptional regulat 26.0 24 0.00083 22.3 1.1 46 34-80 14-59 (199)
215 3on2_A Probable transcriptiona 25.9 18 0.00062 22.5 0.5 45 34-79 18-62 (199)
216 2kvr_A Ubiquitin carboxyl-term 25.8 13 0.00045 23.5 -0.2 20 52-71 72-91 (130)
217 2ibd_A Possible transcriptiona 25.8 31 0.0011 21.8 1.7 45 34-79 20-64 (204)
218 3f0c_A TETR-molecule A, transc 25.7 31 0.0011 21.8 1.7 45 34-79 17-61 (216)
219 2dg8_A Putative TETR-family tr 25.7 23 0.0008 22.3 1.0 45 34-79 15-59 (193)
220 3dpj_A Transcription regulator 25.5 33 0.0011 21.3 1.7 45 34-79 14-58 (194)
221 3vp5_A Transcriptional regulat 25.5 39 0.0013 21.3 2.1 45 34-79 18-62 (189)
222 3qqa_A CMER; alpha-helical, he 25.4 31 0.0011 21.8 1.6 45 34-79 25-69 (216)
223 2y2z_A SIM16, SIMR, putative r 25.2 40 0.0014 23.2 2.2 51 28-79 26-77 (267)
224 2q0o_A Probable transcriptiona 25.1 1.5E+02 0.0051 19.6 5.1 48 26-79 173-220 (236)
225 2zcx_A SCO7815, TETR-family tr 24.9 33 0.0011 22.6 1.7 45 34-79 29-73 (231)
226 1x57_A Endothelial differentia 24.8 30 0.001 19.4 1.3 23 52-74 29-51 (91)
227 3c2b_A Transcriptional regulat 24.7 26 0.0009 22.3 1.1 44 34-78 21-64 (221)
228 1ui5_A A-factor receptor homol 24.3 36 0.0012 22.0 1.7 45 34-79 15-59 (215)
229 3c07_A Putative TETR-family tr 24.2 39 0.0013 23.0 2.0 45 34-79 47-91 (273)
230 2f07_A YVDT; helix-turn-helix, 24.1 30 0.001 21.9 1.3 43 34-77 16-58 (197)
231 3g1o_A Transcriptional regulat 24.1 20 0.00067 23.9 0.4 46 34-80 49-94 (255)
232 2l49_A C protein; P2 bacteriop 24.1 27 0.00093 19.8 1.0 23 52-74 20-42 (99)
233 3kkc_A TETR family transcripti 24.0 25 0.00085 21.6 0.9 44 34-78 18-61 (177)
234 3t76_A VANU, transcriptional r 24.0 29 0.00098 20.0 1.1 23 52-74 40-62 (88)
235 3s8q_A R-M controller protein; 23.9 29 0.001 18.9 1.1 23 52-74 27-49 (82)
236 1xwr_A Regulatory protein CII; 23.7 46 0.0016 19.9 2.0 20 52-71 26-45 (97)
237 3egq_A TETR family transcripti 23.6 25 0.00084 21.5 0.8 44 35-79 11-54 (170)
238 3bhq_A Transcriptional regulat 23.6 43 0.0015 21.3 2.0 45 34-79 18-62 (211)
239 3lph_A Protein REV; helix-loop 23.6 1.1E+02 0.0037 17.3 5.5 42 34-89 18-59 (72)
240 2of7_A Putative TETR-family tr 23.3 36 0.0012 22.7 1.7 44 34-78 54-97 (260)
241 3on4_A Transcriptional regulat 23.3 25 0.00086 21.7 0.8 46 34-80 16-61 (191)
242 2v79_A DNA replication protein 23.2 1.2E+02 0.0042 18.8 4.1 45 29-76 30-78 (135)
243 2gen_A Probable transcriptiona 23.2 42 0.0014 21.2 1.9 45 34-79 13-57 (197)
244 4hku_A LMO2814 protein, TETR t 23.1 34 0.0011 21.3 1.4 43 34-77 13-55 (178)
245 2qib_A TETR-family transcripti 23.1 29 0.00098 22.7 1.1 45 34-79 19-63 (231)
246 3qq6_A HTH-type transcriptiona 23.1 31 0.0011 18.9 1.1 21 52-72 26-46 (78)
247 1uxc_A FRUR (1-57), fructose r 23.0 38 0.0013 18.4 1.4 23 52-74 3-25 (65)
248 2ewt_A BLDD, putative DNA-bind 23.0 36 0.0012 17.8 1.3 23 52-74 24-48 (71)
249 2g7s_A Transcriptional regulat 22.9 26 0.00089 21.6 0.8 45 34-79 14-58 (194)
250 3bjb_A Probable transcriptiona 22.9 30 0.001 22.2 1.1 44 34-78 28-71 (207)
251 2dg7_A Putative transcriptiona 22.4 29 0.00098 21.7 1.0 43 34-77 13-55 (195)
252 3col_A Putative transcription 22.3 23 0.00079 21.9 0.5 45 34-79 16-60 (196)
253 3op9_A PLI0006 protein; struct 22.3 36 0.0012 19.9 1.3 23 52-74 25-47 (114)
254 1pdn_C Protein (PRD paired); p 22.2 1.2E+02 0.0041 17.4 4.1 45 27-71 74-125 (128)
255 4aci_A HTH-type transcriptiona 22.2 36 0.0012 21.1 1.4 45 34-79 20-64 (191)
256 1r8d_A Transcription activator 22.1 41 0.0014 19.9 1.6 21 52-72 5-25 (109)
257 1zk8_A Transcriptional regulat 21.8 23 0.00078 21.9 0.4 45 34-79 14-58 (183)
258 3pas_A TETR family transcripti 21.7 31 0.0011 21.3 1.0 42 38-80 18-59 (195)
259 3loc_A HTH-type transcriptiona 21.6 32 0.0011 21.6 1.0 39 38-77 28-66 (212)
260 2jj7_A Hemolysin II regulatory 21.5 37 0.0013 21.0 1.3 40 38-78 17-56 (186)
261 2vz4_A Tipal, HTH-type transcr 21.4 44 0.0015 19.8 1.6 21 52-72 4-24 (108)
262 2zb9_A Putative transcriptiona 21.3 29 0.001 22.1 0.8 44 34-78 29-72 (214)
263 2ppx_A AGR_C_3184P, uncharacte 21.3 36 0.0012 19.5 1.2 24 52-75 46-69 (99)
264 2ofy_A Putative XRE-family tra 21.2 35 0.0012 18.7 1.1 24 51-74 29-52 (86)
265 3v6g_A Probable transcriptiona 21.0 45 0.0015 21.5 1.7 45 34-79 20-64 (208)
266 1l3l_A Transcriptional activat 20.8 1.9E+02 0.0065 19.1 5.2 48 26-79 171-218 (234)
267 3q0w_A HTH-type transcriptiona 20.7 35 0.0012 22.3 1.1 45 34-79 50-94 (236)
268 3cwr_A Transcriptional regulat 20.7 31 0.001 21.6 0.8 42 34-76 23-64 (208)
269 1irz_A ARR10-B; helix-turn-hel 20.5 1.2E+02 0.0041 16.7 5.4 58 22-79 3-62 (64)
270 3lsj_A DEST; transcriptional r 20.3 30 0.001 22.1 0.7 45 34-79 17-62 (220)
271 2gfn_A HTH-type transcriptiona 20.3 33 0.0011 22.0 0.9 45 34-79 15-59 (209)
272 2guh_A Putative TETR-family tr 20.2 42 0.0014 21.7 1.4 44 34-78 45-88 (214)
273 3i5g_C Myosin catalytic light 20.2 1E+02 0.0035 19.0 3.3 36 28-63 2-44 (159)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=114.68 Aligned_cols=67 Identities=28% Similarity=0.497 Sum_probs=61.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 15 DEGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 15 ~~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.....+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 15 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 15 EDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3445567888999999999999999999999999999999999999999999999999999999854
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=113.47 Aligned_cols=65 Identities=42% Similarity=0.664 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 17 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 17 ~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
......++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34466788899999999999999999999999999999999999999999999999999999854
No 3
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.83 E-value=1.1e-20 Score=114.86 Aligned_cols=67 Identities=96% Similarity=1.398 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 16 EGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 16 ~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
.+..+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..+
T Consensus 14 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 14 AGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ----------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 3445667889999999999999999999999999999999999999999999999999999998643
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=4.6e-20 Score=111.74 Aligned_cols=66 Identities=35% Similarity=0.563 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 83 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 83 (111)
.++..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+|+|+....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 345678899999999999999999999999999999999999999999999999999999996543
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=5.1e-20 Score=110.83 Aligned_cols=66 Identities=39% Similarity=0.644 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 17 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 17 ~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
+....+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 445667888999999999999999999999999999999999999999999999999999998554
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=112.87 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 17 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 17 ~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.....+++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+.+
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34466788999999999999999999999999999999999999999999999999999999854
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=109.27 Aligned_cols=64 Identities=30% Similarity=0.502 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3456788999999999999999999999999999999999999999999999999999999864
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.9e-20 Score=110.01 Aligned_cols=64 Identities=42% Similarity=0.681 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3456788999999999999999999999999999999999999999999999999999999854
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.82 E-value=3.5e-20 Score=107.57 Aligned_cols=60 Identities=65% Similarity=0.950 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 21 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 21 ~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 467889999999999999999999999999999999999999999999999999999985
No 10
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=3.2e-20 Score=115.52 Aligned_cols=69 Identities=38% Similarity=0.651 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHHH
Q psy9869 16 EGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI 84 (111)
Q Consensus 16 ~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 84 (111)
...++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.....
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 344566788999999999999999999999999999999999999999999999999999999965543
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=1.9e-20 Score=108.32 Aligned_cols=60 Identities=32% Similarity=0.572 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 21 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 21 ~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=109.03 Aligned_cols=64 Identities=31% Similarity=0.460 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4567788999999999999999999999999999999999999999999999999999999854
No 13
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=110.16 Aligned_cols=63 Identities=25% Similarity=0.473 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+.+++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||+|||+++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999954
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=9.9e-20 Score=107.66 Aligned_cols=63 Identities=41% Similarity=0.680 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 456778899999999999999999999999999999999999999999999999999999854
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=7.5e-20 Score=110.77 Aligned_cols=64 Identities=34% Similarity=0.501 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 3466788999999999999999999999999999999999999999999999999999999854
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.81 E-value=1.7e-19 Score=108.46 Aligned_cols=65 Identities=62% Similarity=0.833 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 83 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 83 (111)
.+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 35577899999999999999999999999999999999999999999999999999999996543
No 17
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=7.2e-20 Score=111.06 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
..+.+++.|+.|+..|+..|+..|.. ++||+..++..||..|||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34567889999999999999999999 999999999999999999999999999999999875
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=108.87 Aligned_cols=64 Identities=39% Similarity=0.674 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3466788999999999999999999999999999999999999999999999999999999854
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=6.5e-20 Score=105.74 Aligned_cols=58 Identities=47% Similarity=0.811 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999987
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=1e-19 Score=107.07 Aligned_cols=61 Identities=41% Similarity=0.638 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999999654
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=108.36 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3456788999999999999999999999999999999999999999999999999999999853
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.2e-19 Score=103.56 Aligned_cols=57 Identities=47% Similarity=0.792 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467999999999999999999999999999999999999999999999999999987
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=2e-19 Score=109.12 Aligned_cols=64 Identities=39% Similarity=0.615 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
.+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999654
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=1.8e-19 Score=103.55 Aligned_cols=58 Identities=53% Similarity=0.794 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999984
No 25
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=113.49 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=56.4
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 15 DEGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 15 ~~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.++..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.+
T Consensus 18 ~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 18 GPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3444456678899999999999999999999999999999999999999999999999999999965
No 26
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=102.31 Aligned_cols=57 Identities=46% Similarity=0.737 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 577899999999999999999999999999999999999999999999999999875
No 27
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=106.75 Aligned_cols=63 Identities=44% Similarity=0.693 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999853
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=6.1e-20 Score=108.01 Aligned_cols=63 Identities=38% Similarity=0.602 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
|.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+...
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999999999998643
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=3.1e-19 Score=106.39 Aligned_cols=62 Identities=45% Similarity=0.705 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45688899999999999999999999999999999999999999999999999999999854
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=2.7e-19 Score=105.25 Aligned_cols=60 Identities=40% Similarity=0.720 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 578899999999999999999999999999999999999999999999999999999854
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=1.8e-19 Score=106.06 Aligned_cols=60 Identities=88% Similarity=1.285 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 578899999999999999999999999999999999999999999999999999999854
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=1.9e-19 Score=105.24 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 578899999999999999999999999999999999999999999999999999998854
No 33
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.78 E-value=2.3e-19 Score=103.12 Aligned_cols=57 Identities=44% Similarity=0.670 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 25 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 588999999999999999999999999999999999999999999999999999854
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=109.07 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTN----HYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~----~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+.+++.|+.|+..|+..|+..|..+ +||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 45678899999999999999999999 999999999999999999999999999999999984
No 35
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=109.02 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 17 GANGLRRRGRQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 17 ~~~~~~r~~r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..+.+++.|+.|+..|+..|+ .|.. ++||+..++..||..+||++.+|+|||||||+|+++
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3346678899999999999999 7999 999999999999999999999999999999999875
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=3.2e-19 Score=109.79 Aligned_cols=64 Identities=81% Similarity=1.176 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3456788999999999999999999999999999999999999999999999999999999853
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=4.8e-19 Score=103.82 Aligned_cols=60 Identities=40% Similarity=0.547 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 367899999999999999999999999999999999999999999999999999999854
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=6.1e-19 Score=100.08 Aligned_cols=54 Identities=43% Similarity=0.777 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999984
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=3.9e-19 Score=102.36 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34678899999999999999999999999999999999999999999999999999875
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=8.9e-19 Score=104.06 Aligned_cols=59 Identities=27% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999854
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=6.8e-19 Score=110.14 Aligned_cols=64 Identities=55% Similarity=0.765 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..+..++.|+.|+..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999854
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=9.5e-19 Score=104.92 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 24 ~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
..+..|+.+|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 446679999999999999999999999999999999999999999999999999985
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=104.12 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35577899999999999999999999999999999999999999999999999999854
No 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.6e-18 Score=103.20 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999854
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2.1e-18 Score=102.61 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.++..++.|+.|+..++..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++++..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34567888999999999999999987 99999999999999999999999999999999999854
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.5e-18 Score=108.18 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------CCccchhhhhHHHhhHhhHhHH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------LTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
..+.+++.|+.|+..|+.+|+..|..++||+..++..||..|| |++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999999999999999 9999999999999999998543
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=104.03 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 21 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 21 ~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4577899999999999999999999999999999999999999999999999999999854
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=6.5e-19 Score=108.07 Aligned_cols=62 Identities=31% Similarity=0.525 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHHH
Q psy9869 23 RRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI 84 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 84 (111)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999976553
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=104.19 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 21 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 21 ~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+...|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3455689999999999999999999999999999999999999999999999999999854
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.75 E-value=9.9e-19 Score=104.07 Aligned_cols=62 Identities=31% Similarity=0.517 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHH
Q psy9869 22 RRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 83 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 83 (111)
+++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999 899999999999999999999999999999999999986554
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-18 Score=100.90 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 21 LRRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 21 ~~r~~r~~~s~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.+++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999886
No 52
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.6e-18 Score=98.87 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHT-NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
..+.++|.|+.|+.+|+..|+..|.. ++||+...+..|+..+||++++|++||||+|--.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 44678899999999999999999999 9999999999999999999999999999999643
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=102.11 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
....+++.|+.|+..++.+|+.+|.. ++||+..++..||..+||+..+|++||+|+|.|+++..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 34567888999999999999999987 69999999999999999999999999999999998853
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.74 E-value=2.6e-18 Score=116.73 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 16 EGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 16 ~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
....+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||...
T Consensus 93 ~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 93 IAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3345677889999999999999999999999999999999999999999999999999999999654
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=104.77 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---------------------CCCccchhhhhHHHhhH
Q psy9869 18 ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL---------------------CLTERQIKIWFQNRRMK 76 (111)
Q Consensus 18 ~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l---------------------~l~~~~V~~WFqNrR~k 76 (111)
..+..++.|+.|++.|+.+|+..|..++||+..+++.||..| +|++.+|++||+|||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 346688899999999999999999999999999999999999 78999999999999999
Q ss_pred hhHhHH
Q psy9869 77 LKKEIQ 82 (111)
Q Consensus 77 ~kk~~~ 82 (111)
+++...
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 988543
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.73 E-value=8e-18 Score=96.53 Aligned_cols=55 Identities=31% Similarity=0.389 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 26 RQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
++.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999873
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=3.9e-18 Score=113.86 Aligned_cols=65 Identities=29% Similarity=0.462 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 16 EGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 16 ~~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+..+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 81 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 81 VGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34456678889999999999999999999999999999999999999999999999999999984
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.73 E-value=4.1e-18 Score=115.25 Aligned_cols=61 Identities=31% Similarity=0.458 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999984
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=111.70 Aligned_cols=63 Identities=30% Similarity=0.497 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 17 GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 17 ~~~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 445677889999999999999999999999999999999999999999999999999999986
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=96.90 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 29 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.+..|+..|+..|..++||+..++.+||..+||+..+|++||+|||.++|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.71 E-value=1.7e-17 Score=101.88 Aligned_cols=59 Identities=29% Similarity=0.366 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+.+++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456677999999999999999999 99999999999999999999999999999999987
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=6e-18 Score=100.65 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 22 RRRGRQTYTRYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
..+.+.+++..|+..|+..| ..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 45667778889999999999 999999999999999999999999999999999999874
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.3e-17 Score=101.08 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.++..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 89999999999999999999999999999999999999999999999999884
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=2.4e-17 Score=100.43 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
++.+++|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345667999999999999999 99999999999999999999999999999999999854
No 65
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=99.51 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+..++..|+..|+..|..++||+..++..||..+||++.+|++||+|||+|+++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34489999999999999999999999999999999999999999999999998754
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=6e-17 Score=95.58 Aligned_cols=57 Identities=42% Similarity=0.688 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 25 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
.-.-.+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 7 ~~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 7 HHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 345678999999999999999999999999999999999999999999999999854
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.69 E-value=1.6e-17 Score=111.81 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+.+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5678889999999999999999999999999999999999999999999999999999984
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=94.10 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
...+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999999999999999999999999876
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=3e-17 Score=95.43 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=46.5
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 31 RYQTLELEKEF-HTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 31 ~~q~~~L~~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+.++..|+..| ..++||+..++..||..|||++++|++||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 44799999999 579999999999999999999999999999999999874
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.67 E-value=3.7e-17 Score=102.70 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------hC---CCccchhhhhHHHhhHhh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA------------------LC---LTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~------------------l~---l~~~~V~~WFqNrR~k~k 78 (111)
...++.|+.|+..|+..|+..|..++||+..++++||.. || |++.+|++||||||++++
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 456788999999999999999999999999999999999 88 999999999999999988
Q ss_pred HhHH
Q psy9869 79 KEIQ 82 (111)
Q Consensus 79 k~~~ 82 (111)
+.+.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 7543
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=8.5e-17 Score=108.99 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
...+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|.|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 4567889999999999999999999999999999999999999999999999999999998543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5e-16 Score=91.04 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHH
Q psy9869 27 QTYTRYQTLELEKEFH---TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA 83 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~---~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 83 (111)
..|+..++.+|+..|. .++||+..++..||..+||+..+|++||+|+|.|.++....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3689999999999999 99999999999999999999999999999999999986543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.52 E-value=4.4e-15 Score=103.14 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhHHHhhHhh
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------------LTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WFqNrR~k~k 78 (111)
...++.|+.|+..|+..|+..|..++||+..+++.||..|+ |++.+|++||+|||++.+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 56678899999999999999999999999999999999999 999999999999999876
Q ss_pred H
Q psy9869 79 K 79 (111)
Q Consensus 79 k 79 (111)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=84.14 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhH
Q psy9869 31 RYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 76 (111)
Q Consensus 31 ~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 76 (111)
.+|+..|+.+|..+++|+..++..||..+||+.++|++||||+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999974
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.49 E-value=8.6e-14 Score=85.51 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 25 GRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
....|+..+..+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.++...
T Consensus 8 ~~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 8 HSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 3457899999999999987 999999999999999999999999999999999988544
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=98.60 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhHHHhhHh
Q psy9869 19 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALC---------------------LTERQIKIWFQNRRMKL 77 (111)
Q Consensus 19 ~~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WFqNrR~k~ 77 (111)
..+.++.|+.|++.|+..|+..|..++||+..+++.||..|| |++.+|++||+|||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 456778899999999999999999999999999999999987 78899999999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.33 E-value=8.1e-13 Score=98.84 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 24 ~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+.++.++..++..|+..|..++||+..++.+||..+||+++||++||+|||.|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467789999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.66 E-value=2.6e-09 Score=55.20 Aligned_cols=20 Identities=75% Similarity=1.157 Sum_probs=17.7
Q ss_pred cchhhhhHHHhhHhhHhHHH
Q psy9869 64 RQIKIWFQNRRMKLKKEIQA 83 (111)
Q Consensus 64 ~~V~~WFqNrR~k~kk~~~~ 83 (111)
+||+|||||||+|+||....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999997664
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0036 Score=36.24 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHH
Q psy9869 30 TRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 30 s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNr 73 (111)
++.-..+|+.+|.............|+.+..|+..+|+-||-.+
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 33445899999999999999999999999999999999999644
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.52 E-value=0.73 Score=24.79 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
+..++.+........+.. ..+.......+|..+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888876655444443 333222356889999999999999974
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=83.79 E-value=3.5 Score=25.23 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhh
Q psy9869 25 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
.|..++.++...+-..+..++.+.. ..+|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5778999998777777755665543 35788999999999999977654
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=77.18 E-value=8.2 Score=22.15 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
++.+..++.++.......+. ... ....+|..+||+...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34566888887555545554 332 255789999999999999984
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.42 E-value=7.8 Score=22.29 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 29 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
++..+..+|...|-.. ....++|..+|++...|+.+...-+.+.++..
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4555666665544322 23567899999999999999987777776644
No 84
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=74.83 E-value=11 Score=23.82 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHH-HHh--CCCccchhhhhHHHh
Q psy9869 22 RRRGRQTYTRYQTLELEKEF-HTNHYLTRRRRIEMA-HAL--CLTERQIKIWFQNRR 74 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F-~~~~~p~~~~~~~La-~~l--~l~~~~V~~WFqNrR 74 (111)
+++.|.++|-.|...+..++ ..++..+..+...++ ..+ +++...|..|..++-
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 36789999999999999998 677777765555532 366 778888999987644
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=71.83 E-value=7.9 Score=22.43 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCccchhhhhHHH
Q psy9869 26 RQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~-~~p~~~~~~~La~~l~l~~~~V~~WFqNr 73 (111)
|..++.++....-..+... .. ....+|..+||+...|..|...-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 3568887765544444322 22 35678999999999999998643
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.39 E-value=6.9 Score=20.88 Aligned_cols=48 Identities=15% Similarity=-0.052 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46777888887766432 2245789999999999999998766666653
No 87
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=67.20 E-value=3.3 Score=26.46 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+| . .....+|...|++...|..+|.++-.-..-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~~ 64 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIEA 64 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHHH
Confidence 5566667888888 5 688999999999999999999887666544
No 88
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=64.97 E-value=2.6 Score=27.42 Aligned_cols=44 Identities=5% Similarity=-0.089 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|...+|-. .....||...|++...+..+|.++..-..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHH
Confidence 445556688877754 44677899999999999999988766543
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.94 E-value=12 Score=17.95 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHH
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 72 (111)
.++..+...+...+.. .+ ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4566665444444533 22 2557899999999999999853
No 90
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.27 E-value=14 Score=19.87 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.+++.+..+|...|..+.+-. ....++|..+|++...|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467788888888773321111 234668999999999999988766666554
No 91
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=59.08 E-value=4.9 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++-.-..-
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~ 80 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKADFGLA 80 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHHHHHH
Confidence 445555677777754 346778999999999999999887665443
No 92
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=59.05 E-value=3.5 Score=27.10 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+..-...|...+|-.. ....+|...|++...|..+|.++-.-..--
T Consensus 41 l~aA~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~ 86 (221)
T 3g7r_A 41 LGTATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGKDDLILAY 86 (221)
T ss_dssp HHHHHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 4444555777777653 366789999999999999999877665443
No 93
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=57.94 E-value=29 Score=21.12 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 51 RRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 51 ~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
...++|..+|++...|+.+...-+.+.|+...
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999877766666443
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=57.86 E-value=17 Score=20.41 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 24 ~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
..-..++..+..+|...+ .. ....++|..+|++...|+.+..+-+.|.+...
T Consensus 17 ~~~~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp CCGGGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 334568888988888743 22 23567899999999999999987776666543
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.31 E-value=5 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCccchhhhhHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqN 72 (111)
..++|..+|++...|..|+..
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 567899999999999999864
No 96
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=55.52 E-value=18 Score=21.18 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHH-Hhc-CCCC-HHHHHHHHHHhCCCccchhhhhHH
Q psy9869 26 RQTYTRYQTLELEKEF-HTN-HYLT-RRRRIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F-~~~-~~p~-~~~~~~La~~l~l~~~~V~~WFqN 72 (111)
+..|+.++....-..+ ... .+.+ ......+|..+||+...|..|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3468887765443333 322 1222 245778999999999999999853
No 97
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=55.12 E-value=5 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....||...|++...+..+|.++-.-..-
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 81 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDVLFA 81 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 445556677777754 346778999999999999999887765443
No 98
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=54.61 E-value=3.6 Score=27.23 Aligned_cols=46 Identities=11% Similarity=-0.015 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|...+|-.. ....||...|++...|..+|.++-.-..--
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~ 94 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQMADAL 94 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHHHHHH
Confidence 3444455777776553 367789999999999999998876655443
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=54.39 E-value=28 Score=21.04 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
.+++.+..++...|..+- ...++|..+|++...|+.|...-+.+.++...
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777654332 24678999999999999999887777776443
No 100
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=54.31 E-value=16 Score=19.92 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhH
Q psy9869 29 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI 81 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 81 (111)
+++.+..+|..++ ..+ ...++|..+|++...|+.+...-+.+.+..+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4566666666532 222 2457899999999999999987777766533
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.02 E-value=23 Score=18.83 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
-..+++.+..+|...+ ..+ ...++|..+|++...|..+...-+.+.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4568888888887742 232 34678999999999999998766666554
No 102
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=53.94 E-value=6.6 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56799999999999999998765
No 103
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.81 E-value=7.7 Score=21.93 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNr 73 (111)
...||..||++..-|..|..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999999653
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=53.56 E-value=30 Score=19.95 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
..++..+..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4588888888887532 32 23678999999999999998877766655
No 105
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=52.36 E-value=9.5 Score=25.86 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=36.5
Q ss_pred CCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 24 RGRQTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 24 ~~r~~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
..+...+... +..-...|....|-. .....||..+|++...|..+|.|+-.-..-
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a 79 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTELLRA 79 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHHHH
Confidence 3444566654 445556677777655 346678999999999999999887655433
No 106
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=51.74 E-value=6.5 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=36.0
Q ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 23 RRGRQTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 23 r~~r~~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
...+...+... +......|....|-. .....||..+|++...|..+|.++..-..
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 33445556654 555666677777643 33677899999999999999987665543
No 107
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=51.20 E-value=36 Score=20.09 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
...+++.+..+|...+. .+ ...++|..+|++...|+.+..+-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45689999999877553 22 23678999999999999998765555443
No 108
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=50.40 E-value=8.4 Score=24.64 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+| . .....+|...|++...|..+|.++..-..-
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 62 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQALVVA 62 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 3444556888888 5 678899999999999999999987766544
No 109
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.09 E-value=20 Score=23.46 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 29 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+++.+..+|...|-. .....++|..+|++...|+.+...-+.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 455555666555532 12356789999999999999998777666653
No 110
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=46.60 E-value=7.6 Score=24.44 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|- .....+|...|++...|..+|.++..-..-
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 55556668888877 668889999999999999999887766544
No 111
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=45.08 E-value=15 Score=18.99 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.0
Q ss_pred HHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 53 IEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 53 ~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.++|..+|++...|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 468999999999999998866666554
No 112
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=45.04 E-value=20 Score=24.08 Aligned_cols=56 Identities=13% Similarity=-0.014 Sum_probs=36.3
Q ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 23 RRGRQTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 23 r~~r~~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
++.+...+... +......|....|-.. ....||..+|++...+...|.|+-.-..-
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 66 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERGL-TFRALAERLATGPGAIYWHITGKAELLGA 66 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTTC-CHHHHHHHHTSCGGGGGGTCCCHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHHCCChHHHHHhcCCHHHHHHH
Confidence 34444555554 4555666777776553 46678999999999999999887655433
No 113
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=44.95 E-value=8.1 Score=20.05 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=44.50 E-value=37 Score=18.31 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
.+++.+..++...|-.... ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888752110 0122457899999999999999876666665
No 115
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=44.16 E-value=8.6 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567899999999999999976543
No 116
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=43.31 E-value=26 Score=19.89 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
-..++..+..+|...+ ..+. ..++|..+|++...|+.+..+-+.|.+..
T Consensus 27 l~~Lt~~e~~vl~l~~--~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 27 YEMLTEREMEILLLIA--KGYS----NQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGGCCSHHHHHHHHHH--TTCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH--cCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3457888888887743 2332 34578999999999999998777666553
No 117
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=42.93 E-value=48 Score=19.20 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CccchhhhhH
Q psy9869 25 GRQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCL--TERQIKIWFQ 71 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l--~~~~V~~WFq 71 (111)
....++..++..|...|.. +.+.+..+...+...+|. +...|..+|.
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456888999999999954 678999999998888885 5667777774
No 118
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=42.49 E-value=19 Score=20.12 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 26 RQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
...++..+...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 445677788888888853 5678888888888889988878877774
No 119
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=42.42 E-value=59 Score=20.09 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCcc
Q psy9869 25 GRQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTER 64 (111)
Q Consensus 25 ~r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~ 64 (111)
.+..+|..|+..|...|.. +.+.+..+...+...+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999964 678999999998888986553
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=42.06 E-value=9.4 Score=20.17 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987654
No 121
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=41.78 E-value=12 Score=23.31 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...+..+|.++..-..-
T Consensus 15 l~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 59 (195)
T 3ppb_A 15 LETALQLFVSQGFHGT-STATIAREAGVATGTLFHHFPSKEQLLEQ 59 (195)
T ss_dssp HHHHHHHHHHTCSTTS-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 4555666777777553 47778999999999999999887665444
No 122
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.76 E-value=12 Score=24.71 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=33.3
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 27 QTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 27 ~~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
...+... +..-...|.... ......||..+|++...+...|.|+-.-..
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 58 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVE 58 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHH
Confidence 3445443 444455566665 455778899999999999999988765543
No 123
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=41.71 E-value=12 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....||...|++...|..+|.++-.-..-
T Consensus 36 l~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~ 80 (230)
T 2iai_A 36 LSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEELLRR 80 (230)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHHHHHH
Confidence 5566677887887653 36778999999999999999877665443
No 124
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.27 E-value=0.22 Score=32.78 Aligned_cols=30 Identities=7% Similarity=-0.026 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCH
Q psy9869 20 GLRRRGRQTYTRYQTLELEKEFHTNHYLTR 49 (111)
Q Consensus 20 ~~~r~~r~~~s~~q~~~L~~~F~~~~~p~~ 49 (111)
...++.|+.|+..|+..|+..|+.+++|+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999874
No 125
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=41.21 E-value=35 Score=19.20 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 28 TYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
.++..+...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677888888888853 5567888888887888888777766654
No 126
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.04 E-value=10 Score=20.33 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 127
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.93 E-value=10 Score=20.27 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCccchhhhh
Q psy9869 52 RIEMAHALCLTERQIKIWF 70 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WF 70 (111)
...||..+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 128
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.31 E-value=12 Score=24.03 Aligned_cols=44 Identities=7% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|.... .......||...|++...|..+|.++..-..-
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a 69 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLFVE 69 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 445555577776 55668889999999999999999887766544
No 129
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=39.98 E-value=11 Score=23.49 Aligned_cols=45 Identities=4% Similarity=-0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-... ...+|...|++...+..+|.++-.-..-
T Consensus 16 l~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~L~~~ 60 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQFGQA 60 (197)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHHHHHH
Confidence 55556668877775533 6678999999999999999887765444
No 130
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.80 E-value=19 Score=20.42 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+++.+..+|...|-.... ......++|..+|++...|+.+...-+.+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4677788888877742100 112345678899999999999998777666653
No 131
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=39.55 E-value=43 Score=18.97 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 28 TYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
.++..+...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566777888888843 5678888888888888888777776664
No 132
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=39.47 E-value=8.4 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|....| . .....+|...|++...|..+|.++-.-..-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 65 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLLQA 65 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHHHH
Confidence 4455566888888 5 578899999999999999999887766544
No 133
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=39.37 E-value=12 Score=20.15 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997653
No 134
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=39.11 E-value=20 Score=22.71 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-... ...+|...|++...+..+|.++-.-..-
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~L~~~ 64 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEAVLRD 64 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHHHHHH
Confidence 55556678888876544 6778999999999999999887665443
No 135
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.84 E-value=12 Score=20.09 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999976543
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.69 E-value=63 Score=19.33 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
.+++.+..++...|-.. ....++|..+|++...|+.+...-+.+.++...
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35666677776654322 234678999999999999999877777776543
No 137
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=38.68 E-value=20 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|...|.++-.-..-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 67 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKNAIPWG 67 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTTTGGGC
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHHHHHHH
Confidence 455556677788755 346778999999999999999887665433
No 138
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.17 E-value=20 Score=24.29 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=36.9
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 25 GRQTYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 25 ~r~~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
.+...+... +..-...|....|-.. ....||..+|++...|...|.|+-.-.
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~Ll 67 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAELH 67 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHHHH
Confidence 344556654 5555666777777553 466789999999999999998876543
No 139
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.04 E-value=12 Score=20.09 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56789999999999999997654
No 140
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.02 E-value=16 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhH
Q psy9869 31 RYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 31 ~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 71 (111)
..+...+...+. ..+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 444444444443 232 355789999999999999874
No 141
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=37.98 E-value=12 Score=20.57 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457899999999999999977654
No 142
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=37.88 E-value=14 Score=23.04 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 33 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 33 q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
-+......|...+|-. .....+|...|++...+...|.++-.-..-
T Consensus 16 il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 61 (196)
T 3he0_A 16 ILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEHLLEE 61 (196)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHHHHHH
Confidence 3556666788888755 346778999999999999999887665444
No 143
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.32 E-value=13 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999877654
No 144
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=37.25 E-value=74 Score=19.71 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHHHHHHHHHH
Q psy9869 35 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQE 91 (111)
Q Consensus 35 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~~~~~~~ 91 (111)
...+-.|+.||||... |- ++ ==.|||-+||..+..+....+..
T Consensus 16 RiIkiLyQSNPyP~pe---------GT--Rq---aRRNRRRRWR~RQrQI~~iseRI 58 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPE---------GT--RQ---ARRNRRRRWRERQRQIHSISERI 58 (115)
T ss_dssp HHHHHHHHSSCCCCCC---------CC--TT---THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCC---------Cc--hh---hhHhHHHHHHHHHHHHHHHHHHH
Confidence 3455568899998854 11 11 12589999999777776655443
No 145
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=36.50 E-value=20 Score=22.87 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-... ...+|...|++...|..+|.|+-.-..-
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~~~ 61 (210)
T 2xdn_A 17 IEAAERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNKAELVQA 61 (210)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCHHHHHHH
Confidence 44445568888876533 6778999999999999999887665443
No 146
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.34 E-value=27 Score=22.26 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 33 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 33 q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
-+..-...|....|-.. ....+|...|++..-|..+|.++..-..-
T Consensus 16 Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L~~a 61 (202)
T 2i10_A 16 ALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRDLFEK 61 (202)
T ss_dssp HHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHHHHHH
Confidence 35555667888887653 36778999999999999999887665443
No 147
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=36.16 E-value=19 Score=19.88 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998654
No 148
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.03 E-value=27 Score=22.19 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
..++|..+|++...|+.+...-+.+.|+.
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998777776653
No 149
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=35.64 E-value=25 Score=22.22 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-... ...+|...|++...+...|.|+-.-..-
T Consensus 18 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~sKe~L~~a 62 (197)
T 2hyt_A 18 LATARKVFSERGYADTS-MDDLTAQASLTRGALYHHFGDKKGLLAA 62 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCTTHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 44555668888876533 6778999999999999999887766544
No 150
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=35.57 E-value=12 Score=24.03 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|...+|- .....+|...|++..-|..+|.++..-..--
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~ 62 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLYLAC 62 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHHHH
Confidence 44445557777776 5688889999999999999999877665543
No 151
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.06 E-value=65 Score=18.43 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 24 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 24 ~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
.....++..+..+|...+ ..+ ...++|..||++...|+....+=..|..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 345678999999998766 232 3567899999999999988876555543
No 152
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=35.01 E-value=15 Score=19.51 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56789999999999999987653
No 153
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.92 E-value=14 Score=19.83 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 154
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=34.71 E-value=21 Score=22.33 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+......|...+|-... ...+|...|++...+..+|.++..-.
T Consensus 9 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 44455667777776533 66789999999999999998887765
No 155
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=34.63 E-value=27 Score=22.16 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...|..+|.++..-..-
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 67 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKLFST 67 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3444555777777654 36678999999999999999887766544
No 156
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.53 E-value=69 Score=19.05 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHH
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 72 (111)
..++.++...+...+.. .. ....+|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 45677766665555543 32 2456788999999999999964
No 157
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.41 E-value=12 Score=23.93 Aligned_cols=45 Identities=9% Similarity=-0.029 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-. .....+|...|++...|..+|.|+-.-..-
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a 59 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDEMFAF 59 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 455566688777754 336678999999999999999887665443
No 158
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=34.19 E-value=17 Score=20.60 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999998754
No 159
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.86 E-value=18 Score=20.18 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999998765
No 160
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=33.83 E-value=15 Score=20.90 Aligned_cols=23 Identities=13% Similarity=0.481 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56789999999999999997654
No 161
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=33.60 E-value=25 Score=22.10 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-... ...+|...|++...+...|.++..-..-
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 66 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAGLLKA 66 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHHHHHH
Confidence 55556668888875543 6677999999999999999987666544
No 162
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=33.12 E-value=20 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+......|...+|-.. ....+|...|++..-|..+|.++-.-.
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 4445555787887653 367789999999999999998776554
No 163
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.83 E-value=71 Score=21.70 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
..+++.+..+|...+ ..+ .-.++|..+|++...|+....+-+.+.+..+.
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 468888888887754 332 25668999999999999999887777776433
No 164
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=32.63 E-value=64 Score=17.66 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHH
Q psy9869 29 YTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ 82 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 82 (111)
++.....+|-.+=+.+-.....-++.|...---++..|..+.-|.|+-||-++.
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~ 58 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQ 58 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhh
Confidence 445556676655566667777778888755555778899999999999987653
No 165
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.31 E-value=35 Score=21.42 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=18.0
Q ss_pred HHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 55 MAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 55 La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+|..+|++...|+.+...-+.+.|+
T Consensus 157 IA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 157 LAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp STTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4556678888898888766666654
No 166
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=32.26 E-value=23 Score=22.14 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 33 QTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 33 q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
-+......|...+|-.. ....+|...|++...|..+|.++..-..-
T Consensus 12 Il~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~~a 57 (192)
T 2zcm_A 12 IIDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNKEEIYRK 57 (192)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 35555666888887553 36778999999999999999887665544
No 167
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=32.26 E-value=24 Score=22.05 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-... ...||...|++...|..+|.++-.-..-
T Consensus 23 l~aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 67 (206)
T 3kz9_A 23 MEIALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTREDLVDE 67 (206)
T ss_dssp HHHHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 34445557778876533 6678999999999999999887665443
No 168
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=32.10 E-value=24 Score=22.71 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 37 LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 37 L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
-...|....|-. .....+|...|++...|..+|.|+..-..-
T Consensus 33 A~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~L~~a 74 (214)
T 2oer_A 33 AVQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAAILFR 74 (214)
T ss_dssp HHHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHHHHHH
Confidence 334477777654 336778999999999999999887666543
No 169
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=32.08 E-value=24 Score=21.91 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|...+|-.. ....+|...|++...+...|.++-.-..--
T Consensus 8 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 53 (194)
T 3bqz_B 8 LGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTKENLFLEI 53 (194)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHHHHHHH
Confidence 4455566777776553 367789999999999999998876655443
No 170
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=31.97 E-value=19 Score=20.24 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCccchhhhhH
Q psy9869 52 RIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFq 71 (111)
+.++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45688999999999999975
No 171
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.62 E-value=60 Score=20.53 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCc
Q psy9869 26 RQTYTRYQTLELEKEFHT-----NHYLTRRRRIEMAHALCLTE 63 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~ 63 (111)
++.+|.+|+..|...|.. +.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 456788888888888853 56788888888777877654
No 172
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.57 E-value=31 Score=21.23 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHH-HhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN-RRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN-rR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...+...|.| +-.-..-
T Consensus 12 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~ 57 (191)
T 1sgm_A 12 LHTASRLSQLQGYHAT-GLNQIVKESGAPKGSLYHFFPNGKEELAIE 57 (191)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHCCCSCHHHHSTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCCchhHHHHccccHHHHHHH
Confidence 4455566777776553 3667899999999999999997 7665444
No 173
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.46 E-value=28 Score=21.77 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.+++.+..+|... |.......++|..+|++...|+.....-|.+.++
T Consensus 93 ~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3556666666443 2223345778999999999999999866666655
No 174
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=31.43 E-value=22 Score=22.70 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+..-...|...+|-... ...+|...|++...|..+|.++..-..
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L~~ 59 (210)
T 3vib_A 16 MLAALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDLFD 59 (210)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHHHH
Confidence 34445568888876543 667899999999999999998766543
No 175
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=31.27 E-value=20 Score=22.35 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...|..+|.++-.-..-
T Consensus 13 l~aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 57 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKEQLALA 57 (199)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHHHHHHH
Confidence 3444555777776553 36678999999999999999887766544
No 176
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=30.98 E-value=30 Score=18.70 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHh
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..++...+..+..... . ...+||..+|++...|..|=.+++
T Consensus 9 ~~~~g~~lr~~R~~~g----l---tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC----C---CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 4577777777765432 2 246789999999999999987754
No 177
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=30.93 E-value=31 Score=21.29 Aligned_cols=45 Identities=13% Similarity=-0.000 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|...|.++-.-..-
T Consensus 13 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~~L~~a 57 (180)
T 2fd5_A 13 LGAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKDALMLE 57 (180)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHHHHHHH
Confidence 344455577777755 346778999999999999999887665544
No 178
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.72 E-value=25 Score=18.94 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCccchhhhhHHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNr 73 (111)
..++|..||++...|..|-.+.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 4568889999999999998654
No 179
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=30.56 E-value=27 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+..-...|....|-... ...+|...|++...|..+|.|+..-.
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (210)
T 2wui_A 17 LDAAERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNKIEVC 59 (210)
T ss_dssp HHHHHHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 44445568888876533 66779999999999999998876544
No 180
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=30.49 E-value=24 Score=22.15 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....||...|++...+..+|.++-.-..-
T Consensus 22 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 66 (211)
T 3him_A 22 RAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKESLLYA 66 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHHHHHHH
Confidence 455556677777764 346778999999999999999877665444
No 181
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.44 E-value=23 Score=22.30 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 19 l~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 63 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQEELLSW 63 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 455566677777654 346778999999999999999887666544
No 182
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=30.13 E-value=19 Score=23.52 Aligned_cols=45 Identities=7% Similarity=-0.022 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-. .....++...|++...|..+|.++..-..-
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L~~a 85 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDDLITD 85 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHHHHHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 444455677777744 336678999999999999999987766554
No 183
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.80 E-value=28 Score=22.18 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-.. ....+|...|++...|..+|.++-.-..-
T Consensus 14 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tiY~~F~sKe~L~~~ 58 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGA-RIDRIAAEARANKQLIYAYYGNKGELFAS 58 (202)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4455566777777553 36678999999999999999887665443
No 184
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=29.69 E-value=30 Score=21.26 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+...|.++-.-..-
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDELLEQ 58 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHHHHHH
Confidence 444555677777654 446778999999999999999877665444
No 185
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=29.53 E-value=20 Score=22.41 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++..-..-
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGLYAA 58 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 445555677777643 336678999999999999999887655433
No 186
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.48 E-value=21 Score=19.47 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 187
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=29.35 E-value=30 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....++...|++...|..+|.++-.-..-
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHALLLG 54 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHHHHHH
Confidence 445556677777754 346778999999999999999887665544
No 188
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=29.18 E-value=25 Score=18.41 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCccchhhhhHHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNr 73 (111)
...+|..+|++...|..|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999998544
No 189
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.97 E-value=26 Score=21.95 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKEDILKN 62 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 444555677777754 346778999999999999999887655443
No 190
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=28.71 E-value=27 Score=21.67 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-... ...+|...|++...+...|.++..-..-
T Consensus 8 l~aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sKe~L~~~ 52 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSKEELITE 52 (179)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCHHHHHHH
Confidence 34445567777876533 6678999999999999999887665444
No 191
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=28.46 E-value=26 Score=22.18 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|....|-.. ....+|...|++...|...|.++..-..-
T Consensus 16 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 60 (216)
T 3s5r_A 16 LDAATTLFAEQGIAAT-TMAEIAASVGVNPAMIHYYFKTRDSLLDT 60 (216)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHTTTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCCHHHHHHHcCCHHHHHHH
Confidence 5555666877777653 36778999999999999999887655433
No 192
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.12 E-value=20 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 193
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=27.93 E-value=23 Score=23.41 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|....|-. .....||...|++...|..+|.++-.-..-
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~ 96 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLLQA 96 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHHH
Confidence 344455577777654 346778999999999999999987766544
No 194
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=27.83 E-value=25 Score=22.02 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..--
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 62 (203)
T 3b81_A 17 ANKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSKEECADAA 62 (203)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCHHHHHHHH
Confidence 444555677777755 3467789999999999999998876655443
No 195
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=27.74 E-value=28 Score=21.93 Aligned_cols=45 Identities=4% Similarity=-0.084 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|...|.++-.-..-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~ 64 (212)
T 3knw_A 20 LDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEAFGCE 64 (212)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 444555677777655 336678999999999999999887765444
No 196
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.72 E-value=23 Score=19.39 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999997754
No 197
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=27.49 E-value=25 Score=22.42 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-... ...+|...|++..-|..+|.++-.-..-
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~L~~a 64 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDDLLAA 64 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHHHHHH
Confidence 44445568888876544 6677999999999999999887665443
No 198
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=27.28 E-value=94 Score=18.26 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHH
Q psy9869 23 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 23 r~~r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 72 (111)
...+..++.......-.....+. ....++|...+|+..+|..|-.-
T Consensus 27 ~~~~rrWs~~~Kl~VV~~~~~g~----~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 27 PLDTRRWVASRKAAVVKAVIHGL----ITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp CSSCCCCCHHHHHHHHHHHHTTS----SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHhhhccCHHHHHHHHHHHHcCC----CCHHHHHHHhCCCHHHHHHHHHH
Confidence 33455677776443333333222 23557799999999999999853
No 199
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=27.26 E-value=26 Score=22.27 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-.. ....+|...|++..-|..+|.++-.-..-
T Consensus 15 l~aA~~lf~~~G~~~~-s~~~IA~~aGvsk~tlY~~F~sKe~L~~a 59 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEIT-SMDRIAARAEVSKRTVYNHFPSKEELFAE 59 (203)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHcCchhc-CHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 3444455777777653 36778999999999999999887665433
No 200
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.25 E-value=40 Score=19.31 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCccchhhhhHHH
Q psy9869 50 RRRIEMAHALCLTERQIKIWFQNR 73 (111)
Q Consensus 50 ~~~~~La~~l~l~~~~V~~WFqNr 73 (111)
.....||..+|+++..+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788999999999998888643
No 201
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=27.07 E-value=26 Score=22.18 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...+..+|.++-.-..-
T Consensus 15 l~aA~~lf~~~G~~~~-t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~ 59 (204)
T 3anp_C 15 FRAAMELFRNRGFQET-TATEIAKAAHVSRGTFFNYYPYKEAVLLD 59 (204)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCchHHHHHHcCCHHHHHHH
Confidence 3445556777777653 36778999999999999999887665444
No 202
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.92 E-value=1e+02 Score=18.12 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 28 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
.+++.+..++...|-.+.. ......++|..+|++...|+.....-..+.|+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3566677777777653211 113356789999999999999887666655553
No 203
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=26.87 E-value=24 Score=22.43 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+..-...|....|-.. ....+|...|++...|..+|.++..-..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~~L~~ 60 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETREDLME 60 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3344555777777654 3677899999999999999988766543
No 204
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.79 E-value=25 Score=22.32 Aligned_cols=45 Identities=4% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-.. ....+|...|++...|..+|.++..-..-
T Consensus 18 l~aA~~lf~~~Gy~~t-s~~~IA~~agvs~gtlY~yF~sKe~L~~~ 62 (205)
T 1rkt_A 18 LEAAKTVFKRKGFELT-TMKDVVEESGFSRGGVYLYFSSTEEMFRR 62 (205)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCCcchhhhhCCCHHHHHHH
Confidence 3344555888887653 36778999999999999999887666544
No 205
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.66 E-value=30 Score=21.54 Aligned_cols=45 Identities=4% Similarity=0.064 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 64 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDELFAA 64 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHHHHH
Confidence 344455577777654 346778999999999999999887766444
No 206
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.63 E-value=19 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...|..+|.|+-.-..-
T Consensus 14 l~aA~~lf~~~Gy~~~-s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~ 58 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQS-QVSKIAKQAGVADGTIYLYFKNKEDILIS 58 (206)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 4555666877777543 36678999999999999999987766544
No 207
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=26.62 E-value=31 Score=21.79 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 35 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 35 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
..-...|....|-... ...+|...|++...|...|.|+..-..-
T Consensus 17 ~aA~~lf~~~G~~~~s-~~~IA~~aGvs~gtlY~yF~sKe~L~~a 60 (194)
T 2nx4_A 17 AAAWRLIAARGIEAAN-MRDIATEAGYTNGALSHYFAGKDEILRT 60 (194)
T ss_dssp HHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHhcCcccCC-HHHHHHHhCCCcchHHHhCcCHHHHHHH
Confidence 3445558888876543 6677999999999999999887666543
No 208
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.54 E-value=26 Score=22.46 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-.. ....+|...|++..-|..+|.|+..-..-
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L~~a 61 (219)
T 2w53_A 17 LDAAEACFHEHGVART-TLEMIGARAGYTRGAVYWHFKNKSEVLAA 61 (219)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchHHhhcCCCHHHHHHH
Confidence 5566667888887653 46778999999999999999887666543
No 209
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=26.47 E-value=24 Score=19.69 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 210
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=26.44 E-value=31 Score=21.69 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++..-..-
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 68 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEALYIA 68 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHHHHHH
Confidence 344455577777654 346778999999999999999887665443
No 211
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=26.37 E-value=23 Score=22.06 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|... .......+|...|++...|..+|.++-.-..-
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLLRA 62 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 33344446555 55667889999999999999999887665544
No 212
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=26.32 E-value=31 Score=21.71 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 64 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSDLFSE 64 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHHHHHH
Confidence 344455577777654 346778999999999999999887665444
No 213
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=26.08 E-value=31 Score=21.81 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|...|.|+-.-..-
T Consensus 19 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 63 (217)
T 3nrg_A 19 IDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKKDCYLY 63 (217)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCHHHHHHH
Confidence 344455577777654 346778999999999999999887665444
No 214
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=26.00 E-value=24 Score=22.26 Aligned_cols=46 Identities=11% Similarity=-0.068 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|....|-. .....+|...|++...+..+|.++-.-..--
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 59 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFTLDMAC 59 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 344455577777644 3467789999999999999998877665443
No 215
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=25.93 E-value=18 Score=22.48 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-. .....+|...|++...|..+|.++..-..-
T Consensus 18 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 62 (199)
T 3on2_A 18 LARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQALLDA 62 (199)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHHHHHH
T ss_pred HHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHHHHHH
Confidence 445556677777644 336678999999999999999987766544
No 216
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=25.79 E-value=13 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCccchhhhhH
Q psy9869 52 RIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFq 71 (111)
...++..+|+...+++.|+-
T Consensus 72 ~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEEC
T ss_pred HHHHHHHhCCCcccEEEEEe
Confidence 56689999999999999984
No 217
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=25.78 E-value=31 Score=21.84 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-.. ....+|...|++...+..+|.++-.-..-
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~~ 64 (204)
T 2ibd_A 20 LDIAATLFAERGLRAT-TVRDIADAAGILSGSLYHHFDSKESMVDE 64 (204)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHTTSCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHcCchhc-CHHHHHHHhCCCchhHHHhcCCHHHHHHH
Confidence 4444556887877653 36778999999999999999987766544
No 218
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.73 E-value=31 Score=21.82 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...+..+|.++..-..-
T Consensus 17 l~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 61 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKETLFEA 61 (216)
T ss_dssp HHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4555666888887553 36678999999999999999987665444
No 219
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=25.73 E-value=23 Score=22.25 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++..-..-
T Consensus 15 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~ 59 (193)
T 2dg8_A 15 LAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLLRE 59 (193)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHHHHHH
Confidence 455566677777644 346778999999999999999887766544
No 220
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=25.53 E-value=33 Score=21.32 Aligned_cols=45 Identities=9% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...|..+|.++..-..-
T Consensus 14 l~aA~~l~~~~G~~~~-t~~~IA~~Agvs~~tly~~F~sK~~L~~a 58 (194)
T 3dpj_A 14 VAAADELFYRQGFAQT-SFVDISAAVGISRGNFYYHFKTKDEILAE 58 (194)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHHCCChHHHHHHcCCHHHHHHH
Confidence 3344455777776543 36678999999999999999887766544
No 221
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.53 E-value=39 Score=21.29 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...+...|.++-.-..-
T Consensus 18 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~ 62 (189)
T 3vp5_A 18 YDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKDAYFY 62 (189)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 4455556777777554 57788999999999999999877655443
No 222
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=25.37 E-value=31 Score=21.77 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-.. ....+|...|++...|..+|.++-.-..-
T Consensus 25 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 69 (216)
T 3qqa_A 25 KAVALELFLTKGYQET-SLSDIIKLSGGSYSNIYDGFKSKEGLFFE 69 (216)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHHTTSCCSSSCSCCSHHHHHHH
T ss_pred HHHHHHHHHHcChhhC-CHHHHHHHhCCCHHHHHHhcCCHHHHHHH
Confidence 3444555777776553 36678999999999999999877655444
No 223
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=25.15 E-value=40 Score=23.17 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 28 TYTRYQ-TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 28 ~~s~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
..+... +..-...|....|-.. ....||..+|++...+...|.|+-.-..-
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~-Smr~IA~~aGVs~~tlY~hF~~K~~Ll~a 77 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAA-SMRRVAAELGAGTMSLYYYVPTKEDLVEL 77 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHTTCCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 456654 4555666777777553 36678999999999999999877655433
No 224
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.09 E-value=1.5e+02 Score=19.62 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
...+++.+..+|.-.+ ..+ .-.++|..+|++...|+....+-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS--KGK----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHH--TTC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3458888888876643 222 23567889999999999988876666544
No 225
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=24.89 E-value=33 Score=22.63 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++-.-..-
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~~a 73 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQIFLK 73 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHHH
Confidence 444555688888755 346778999999999999999887766544
No 226
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=24.83 E-value=30 Score=19.36 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 227
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.73 E-value=26 Score=22.34 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|....|-. .....+|...|++...|..+|.++-.-..
T Consensus 21 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~~ 64 (221)
T 3c2b_A 21 LDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDGLLA 64 (221)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 445555677777654 34667899999999999999988765543
No 228
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=24.26 E-value=36 Score=21.97 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|...+|-.. ....+|...|++...+...|.|+-.-..-
T Consensus 15 l~aA~~lf~~~Gy~~t-s~~~IA~~AGvskgtlY~~F~sKe~L~~~ 59 (215)
T 1ui5_A 15 IGAAADLFDRRGYEST-TLSEIVAHAGVTKGALYFHFAAKEDLAHA 59 (215)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchhhHhhCCCHHHHHHH
Confidence 5556667888887653 36778999999999999999887665443
No 229
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=24.22 E-value=39 Score=23.02 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|....|-. .....||...|++...|..+|.++-.-..-
T Consensus 47 l~AA~~lf~e~G~~~-~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~a 91 (273)
T 3c07_A 47 LETAMRLFQERGYDR-TTMRAIAQEAGVSVGNAYYYFAGKEHLIQG 91 (273)
T ss_dssp HHHHHHHHHHTCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhCCccc-cCHHHHHHHHCCCHHHHHHHcCCHHHHHHH
Confidence 444555677777755 346778999999999999999887766544
No 230
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=24.14 E-value=30 Score=21.92 Aligned_cols=43 Identities=2% Similarity=0.025 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+......|...+|-... ...+|...|++...+..+|.|+..-.
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~Ia~~Agvskgt~Y~yF~sKe~L~ 58 (197)
T 2f07_A 16 LQAAIEVISEKGLDKAS-ISDIVKKAGTAQGTFYLYFSSKNALI 58 (197)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSSTTHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchHHHHhCCCHHHHH
Confidence 55556668888876533 66789999999999999998876544
No 231
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=24.08 E-value=20 Score=23.87 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|....|-. .....||...|++...|..+|.++..-..--
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v 94 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLLTL 94 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 444455577776644 3366789999999999999998877665543
No 232
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.07 E-value=27 Score=19.76 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 233
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=24.04 E-value=25 Score=21.55 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|...+|-. .....+|...|++...+...|.++-.-..
T Consensus 18 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 61 (177)
T 3kkc_A 18 YNAFISLLQENDYSK-ITVQDVIGLANVGRSTFYSHYESKEVLLK 61 (177)
T ss_dssp HHHHHHHTTTSCTTT-CCHHHHHHHHCCCHHHHTTTCSSTHHHHH
T ss_pred HHHHHHHHHhCChhH-hhHHHHHHHhCCcHhhHHHHcCCHHHHHH
Confidence 344555577777654 34667899999999999999987665443
No 234
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=23.99 E-value=29 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999998754
No 235
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.94 E-value=29 Score=18.89 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 236
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=23.75 E-value=46 Score=19.88 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCccchhhhhH
Q psy9869 52 RIEMAHALCLTERQIKIWFQ 71 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFq 71 (111)
...+|..+|+++..|..|=.
T Consensus 26 q~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 45689999999999999744
No 237
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.61 E-value=25 Score=21.53 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 35 LELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 35 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
......|...+|-. .....++...|++...+..+|.++..-..-
T Consensus 11 ~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (170)
T 3egq_A 11 EAALRLYMKKPPHE-VSIEEIAREAKVSKSLIFYHFESKQKLLEE 54 (170)
T ss_dssp HHHHHHHTTSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHhcCCcc-CcHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 34445566666643 346778999999999999999887665444
No 238
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=23.59 E-value=43 Score=21.30 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-. .....+|...|++..-|...|.|+-.-..-
T Consensus 18 l~aA~~lf~~~G~~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~ 62 (211)
T 3bhq_A 18 IQAATAAFISKGYDG-TSMEEIATKAGASKQTVYKHFTDKETLFGE 62 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 444455688888754 336778999999999999999887766544
No 239
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.58 E-value=1.1e+02 Score=17.34 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHhHHHHHHHHH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNE 89 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~~~~~ 89 (111)
+...+-.|+.||||.+.-... ==.|||-+|+..+..+....+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQrQI~~is~ 59 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQIHSISE 59 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556689999988542111 125888899887666654443
No 240
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=23.34 E-value=36 Score=22.73 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|....|-.. ....||...|++...|..+|.++-.-..
T Consensus 54 l~AA~~lf~e~G~~~~-Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~ 97 (260)
T 2of7_A 54 RAATYGLIRQQGYEAT-TVEQIAERAEVSPSTVLRYFPTREDIVL 97 (260)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHT
T ss_pred HHHHHHHHHHhCcccc-cHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 3444555777777553 3677899999999999999988766544
No 241
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.26 E-value=25 Score=21.68 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
+......|...+|-. .....+|...|++...|...|.++-.-..--
T Consensus 16 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 61 (191)
T 3on4_A 16 LAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKEDLGVAV 61 (191)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHHHHHHHH
Confidence 445555577666544 3366789999999999999999877665443
No 242
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.20 E-value=1.2e+02 Score=18.79 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCccchhhhhHHHhhH
Q psy9869 29 YTRYQTLELEKEFHT----NHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 76 (111)
Q Consensus 29 ~s~~q~~~L~~~F~~----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 76 (111)
++..++.+|...+.. +++|+. ..||..+|++...|...+++--.|
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456666666555442 456665 468999999999998888754443
No 243
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=23.18 E-value=42 Score=21.16 Aligned_cols=45 Identities=7% Similarity=-0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-. .....+|...|++...+...|.|+-.-..-
T Consensus 13 l~aA~~lf~~~G~~~-ts~~~IA~~aGvs~gtlY~~F~sKe~L~~a 57 (197)
T 2gen_A 13 LQAALACFSEHGVDA-TTIEMIRDRSGASIGSLYHHFGNKERIHGE 57 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHCCCHHHHHHH
Confidence 445556688888755 336778999999999999999887766544
No 244
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=23.10 E-value=34 Score=21.35 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+..-...|...+|-. .....+|...|++...|..+|.+|..-.
T Consensus 13 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L~ 55 (178)
T 4hku_A 13 LNMAEKIIYEKGMEK-TTLYDIASNLNVTHAALYKHYRNKEDLF 55 (178)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCcCHhHHHHHCCCHHHHH
Confidence 445556677777744 3367789999999999999998876654
No 245
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=23.07 E-value=29 Score=22.68 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....||...|++...+..+|.++-.-..-
T Consensus 19 l~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~ 63 (231)
T 2qib_A 19 IGVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSLYEA 63 (231)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 444555677777644 346778999999999999999887665433
No 246
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.05 E-value=31 Score=18.89 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCccchhhhhHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqN 72 (111)
...||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999977
No 247
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.01 E-value=38 Score=18.38 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
..+||..+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997664
No 248
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=23.00 E-value=36 Score=17.75 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=19.1
Q ss_pred HHHHHHHhC--CCccchhhhhHHHh
Q psy9869 52 RIEMAHALC--LTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~--l~~~~V~~WFqNrR 74 (111)
...||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467899999 99999999987654
No 249
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=22.91 E-value=26 Score=21.61 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (194)
T 2g7s_A 14 LQCARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSDLVCK 58 (194)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHHHHHH
Confidence 334445577777644 346778999999999999999887665544
No 250
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=22.91 E-value=30 Score=22.21 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|...+|-. .....+|...|++..-|..+|.++..-..
T Consensus 28 l~AA~~lf~e~G~~~-~s~~~IA~~AGVsk~tlY~~F~sKe~L~~ 71 (207)
T 3bjb_A 28 LEAAIELATEKELAR-VQMHEVAKRAGVAIGTLYRYFPSKTHLFV 71 (207)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 445555688887754 33667899999999999999988766543
No 251
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=22.41 E-value=29 Score=21.75 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
+......|...+|-. .....+|...|++...|..+|.++-.-.
T Consensus 13 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 55 (195)
T 2dg7_A 13 KRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKREVL 55 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTGGG
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 455556677777654 3367789999999999999998876554
No 252
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=22.34 E-value=23 Score=21.91 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++-.-..-
T Consensus 16 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 60 (196)
T 3col_A 16 QDAVAAIILAEGPAG-VSTTKVAKRVGIAQSNVYLYFKNKQALIDS 60 (196)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHhCCHHHHHHH
Confidence 445555677776544 336678999999999999999887665443
No 253
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.29 E-value=36 Score=19.94 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccchhhhhHHHh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR 74 (111)
...||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997754
No 254
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.20 E-value=1.2e+02 Score=17.35 Aligned_cols=45 Identities=9% Similarity=-0.116 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC-------CccchhhhhH
Q psy9869 27 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCL-------TERQIKIWFQ 71 (111)
Q Consensus 27 ~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l-------~~~~V~~WFq 71 (111)
..++.+....+......++..+..+........|+ +...|..|+.
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 35666666667766666666666555443333374 6677888875
No 255
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.20 E-value=36 Score=21.09 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 20 l~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 64 (191)
T 4aci_A 20 LEGARRCFAEHGYEG-ATVRRLEEATGKSRGAIFHHFGDKENLFLA 64 (191)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCchHHHHHCCCHHHHHHH
Confidence 344444566555432 336678999999999999999887766544
No 256
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.11 E-value=41 Score=19.93 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCccchhhhhHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqN 72 (111)
+.++|..+|++...++.|-..
T Consensus 5 i~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 346788888888888888543
No 257
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=21.82 E-value=23 Score=21.92 Aligned_cols=45 Identities=9% Similarity=-0.047 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|...+|-. .....+|...|++...|..+|.++-.-..-
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (183)
T 1zk8_A 14 VETAAEIADANGVQE-VTLASLAQTLGVRSPSLYNHVKGLQDVRKN 58 (183)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHTTTCSSHHHHHHH
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHcCCCchHHHHHcCCHHHHHHH
Confidence 455566677777654 336678999999999999999887666544
No 258
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=21.70 E-value=31 Score=21.26 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhHh
Q psy9869 38 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKE 80 (111)
Q Consensus 38 ~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 80 (111)
...|...+|- ......+|...|++...+..+|.++-.-..--
T Consensus 18 ~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (195)
T 3pas_A 18 VREVADHGFS-ATSVGKIAKAAGLSPATLYIYYEDKEQLLLAT 59 (195)
T ss_dssp HHHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHcChH-hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHH
Confidence 3445554442 23367789999999999999999877665443
No 259
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=21.57 E-value=32 Score=21.61 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHh
Q psy9869 38 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL 77 (111)
Q Consensus 38 ~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 77 (111)
...|....|-. .....+|...|++..-|..+|.|+-.-.
T Consensus 28 ~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L~ 66 (212)
T 3loc_A 28 LDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEALY 66 (212)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHTSCHHHHHHHSSSHHHHH
T ss_pred HHHHHHhCccc-CCHHHHHHHHCcCHHHHhhhCCCHHHHH
Confidence 34466655433 2367789999999999999999875443
No 260
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=21.55 E-value=37 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 38 EKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 38 ~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
...|...+|-. .....+|...|++...|..+|.++-.-..
T Consensus 17 ~~l~~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~ 56 (186)
T 2jj7_A 17 KKKFGERGYEG-TSIQEIAKEAKVNVAMASYYFNGKENLYY 56 (186)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHcCCcc-CCHHHHHHHhCCChhhhhhhcCCHHHHHH
Confidence 34455554432 33667899999999999999987765543
No 261
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.40 E-value=44 Score=19.79 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCccchhhhhHH
Q psy9869 52 RIEMAHALCLTERQIKIWFQN 72 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqN 72 (111)
+.++|..+|++...++.|=..
T Consensus 4 i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 346788889998888888643
No 262
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=21.31 E-value=29 Score=22.08 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|....|-.. ....+|...|++...|..+|.++-.-..
T Consensus 29 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 72 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQL-TFERVARVSGVSKTTLYKWWPSKGALAL 72 (214)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHCCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCCCHHHHHHHCCCHHHHHH
Confidence 3344455777776443 3667899999999999999987765543
No 263
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=21.26 E-value=36 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhHHHhh
Q psy9869 52 RIEMAHALCLTERQIKIWFQNRRM 75 (111)
Q Consensus 52 ~~~La~~l~l~~~~V~~WFqNrR~ 75 (111)
...||..+|++...|..|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467899999999999999876543
No 264
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.20 E-value=35 Score=18.71 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCccchhhhhHHHh
Q psy9869 51 RRIEMAHALCLTERQIKIWFQNRR 74 (111)
Q Consensus 51 ~~~~La~~l~l~~~~V~~WFqNrR 74 (111)
....||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 346899999999999999997765
No 265
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=21.01 E-value=45 Score=21.52 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-... ...|+...|++...|..+|.+|-.-..-
T Consensus 20 l~AA~~lf~~~G~~~~s-~~~IA~~AGvs~~tlY~~F~sKe~L~~a 64 (208)
T 3v6g_A 20 VEAAERVIARQGLGGLS-HRRVAAEANVPVGSTTYYFNDLDALREA 64 (208)
T ss_dssp HHHHHHHHHHHCTTCCC-HHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 44555668888875533 6677999999999999999877655433
No 266
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.83 E-value=1.9e+02 Score=19.07 Aligned_cols=48 Identities=6% Similarity=-0.066 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 26 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 26 r~~~s~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
...+++.+..+|.-.+ ..+ .-.++|..+|++...|+....+-+.|..-
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VGK----TMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4468888888876642 222 34567889999999999988766666544
No 267
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=20.69 E-value=35 Score=22.27 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|....|-. .....||...|++...|..+|.|+..-..-
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHHHH
Confidence 334445577777644 336678999999999999999987766544
No 268
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=20.67 E-value=31 Score=21.56 Aligned_cols=42 Identities=5% Similarity=-0.033 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK 76 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 76 (111)
+......|...+|-. .....+|...|++...+..+|.++-.-
T Consensus 23 l~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRADL 64 (208)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 334445577776644 336678999999999999999876554
No 269
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=20.50 E-value=1.2e+02 Score=16.66 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=37.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH-Hhc-CCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 22 RRRGRQTYTRYQTLELEKEF-HTN-HYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 22 ~r~~r~~~s~~q~~~L~~~F-~~~-~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
.++.|-+.|++.-..+.... ... ...++..+.++....||+..+|+.=.|.-|...+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 45677788877544333333 333 23446666666666788999999999887777665
No 270
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=20.34 E-value=30 Score=22.09 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=31.8
Q ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFH-TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~-~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+......|. ..+|-. .....+|...|++...+..+|.++-.-..-
T Consensus 17 l~aa~~l~~~~~G~~~-~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~ 62 (220)
T 3lsj_A 17 MSAARHLMESGRGFGS-LSLREVTRAAGIVPAGFYRHFSDMDQLGLA 62 (220)
T ss_dssp HHHHHHHTTTSCCGGG-CCHHHHHHHHTSCGGGGTTTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 334445566 666543 446778999999999999999887665443
No 271
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.28 E-value=33 Score=22.05 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhhH
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 79 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 79 (111)
+..-...|....|-. .....+|...|++...|..+|.|+-.-..-
T Consensus 15 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a 59 (209)
T 2gfn_A 15 ADAVLALIAREGISA-VTTRAVAEESGWSTGVLNHYFGSRHELLLA 59 (209)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHSSCHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCcchHHhcCCCHHHHHHH
Confidence 344455577777754 346778999999999999999887665544
No 272
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=20.18 E-value=42 Score=21.74 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCccchhhhhHHHhhHhh
Q psy9869 34 TLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK 78 (111)
Q Consensus 34 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 78 (111)
+......|...+|-. .....||...|++...|..+|.++-.-..
T Consensus 45 l~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~ 88 (214)
T 2guh_A 45 VDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQLFD 88 (214)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 344455577777654 33667899999999999999987765543
No 273
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=20.18 E-value=1e+02 Score=19.03 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHhCCCc
Q psy9869 28 TYTRYQTLELEKEFHT-------NHYLTRRRRIEMAHALCLTE 63 (111)
Q Consensus 28 ~~s~~q~~~L~~~F~~-------~~~p~~~~~~~La~~l~l~~ 63 (111)
.+|..|+..|...|.. +.+.+..+...+...||+.+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4788999999988742 35777888888888888654
Done!